RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12425
(591 letters)
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 313 bits (803), Expect = e-103
Identities = 106/291 (36%), Positives = 144/291 (49%), Gaps = 5/291 (1%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF--AEGD 346
A AP LRN N NA C +TG PKP + W + +EI + +G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTA--YFDKGE 404
+ LII SV DA Y RA N+GG S A L + K ++P + +GE
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVA 463
V +KIPF+G P P ITW + ++I++ GH+ V + ++ D Y V A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 464 ENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH 523
+N G+D V++ ++D PDPP+ V D+ DS+ L W P DGGS ITNYIVEK
Sbjct: 181 KNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCAT 240
Query: 524 PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
W+RVG R T + L Y+FRV AEN +G S PS S+ T
Sbjct: 241 TAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTIT 291
Score = 171 bits (434), Expect = 9e-49
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 5/197 (2%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDY-IIIFIKEIRK 60
A++ G+ +KI ++G ++ K ++ ++ ++ V + ++F + +
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER 170
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
+DAG Y V N G T +++ +P PP G VS++++ + L W P DGG K
Sbjct: 171 KDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGV-KVSDVSRDSVNLTWTEPASDGGSK 229
Query: 121 VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
+T+Y+VE+ + W+ + +T + V L Y F V+A N+ G+ P E P
Sbjct: 230 ITNYIVEKCATTAERWLRVG-QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEP 288
Query: 181 IKAKSPYDKPSPPGIPV 197
K K
Sbjct: 289 TITKED--KTRAMNYDE 303
Score = 132 bits (334), Expect = 8e-35
Identities = 67/306 (21%), Positives = 109/306 (35%), Gaps = 30/306 (9%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR-VVQSDDRFKFTVLDDYI-IIFIKEIR 59
L + N + G V + G+ ++ +++ + I +
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 70
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINI---TGLPGPPI--GPLDVSEITKHT----CTLHW 110
+DA Y V +N GSVSGT ++ + + P G V +
Sbjct: 71 DDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG 130
Query: 111 NPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG 170
P +T + + H+ I T + G+ + V A N G
Sbjct: 131 KPD-----PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Query: 171 MGPPLEGINPIKAK---SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID 227
+ + D P PP V+ V D VNL+W +P DGGS+I Y ++
Sbjct: 186 I---------DQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVE 236
Query: 228 KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
K ++ W RV ++ + NL Y+FRV A+N+ GLS PS S K+
Sbjct: 237 KCATTAERWLRVGQ--ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKED 294
Query: 288 MAAKAP 293
Sbjct: 295 KTRAMN 300
Score = 93.7 bits (233), Expect = 3e-21
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNA 310
I ++ + ++V A N+ G S + S++++ P P+ + + +A++
Sbjct: 66 IASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD-TYTLIINSVYGVDADEYVCRAVN 369
+ +G P P I+W KG I + + + T + N V DA YV A N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 370 KGGVKSTKAELIIMTAPKFNVPPR 393
+ G+ EL + P PPR
Sbjct: 183 RFGIDQKTVELDVADVPD---PPR 203
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 263 bits (675), Expect = 6e-83
Identities = 63/287 (21%), Positives = 108/287 (37%), Gaps = 7/287 (2%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEI 58
Y EG+ + + P + ++ V+ + + K +I+ I
Sbjct: 106 NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPT 165
Query: 59 RKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGG 118
D G Y +N G+ + + + +P P G + E+++ T + +N P GG
Sbjct: 166 SDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGG 224
Query: 119 LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
+ + HY V+ ++++ W + + T ++ L Y V AVN G G +
Sbjct: 225 VPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK-- 282
Query: 179 NPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQR 238
I P +PSPP I G LS K DDGG+ I Y + +
Sbjct: 283 IEIFQTLPVREPSPPSIHGQP-SSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWL 340
Query: 239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
I + +L YE ++ A N G S P+ S+ K
Sbjct: 341 EKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 387
Score = 249 bits (638), Expect = 2e-77
Identities = 69/289 (23%), Positives = 108/289 (37%), Gaps = 13/289 (4%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT-------PSARHHIFAEGDTY 348
I+ L+N +N C G P P I+W + T R + + +
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
+L I V D+ Y C A ++ G L I APKF Y +G + +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQT---IYYSWEGNPINI 120
Query: 409 KIPFTGYPKPKITWYRDNEVI--ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
P I W RD V+ ++ + ++ R IL I S+ D Y A N
Sbjct: 121 SCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 467 LGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
+G + ++D P P + ++ + + + P GG I +Y V+ +E
Sbjct: 181 IGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASE 240
Query: 527 SWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
W V + T + + L P YE RV A N G+ D S T
Sbjct: 241 IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL 289
Score = 164 bits (418), Expect = 1e-45
Identities = 55/343 (16%), Positives = 96/343 (27%), Gaps = 42/343 (12%)
Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNA 310
I ++ + A + G S + I+ P+ I + + +
Sbjct: 67 IKDVKLSDSGRYDCEAASRIG---GHQKSMYLDIEYA-----PKFISNQTIYYSWEGNPI 118
Query: 311 QFQCTITGCPKPTISWLKGSREITPS--ARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368
C + P +I W + + ++ G L I D Y C A
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 369 NKGGVKSTKAELIIMTAPKFNVPPRFRDTA-----------YFDKGENVVVKIPFTGYPK 417
N G + + L + P + + + G P Y
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGV------PIHHY-- 230
Query: 418 PKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM----DSAI 473
++ S V + ++ + + T RV A N G I
Sbjct: 231 --QVDVKEV---ASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEI 285
Query: 474 VKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN 533
+ P PP + S L DGG+ I YIV+ R
Sbjct: 286 FQTLPVREPSPPS-IHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKK 343
Query: 534 TRF--TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ + + L YE ++ A N G S+P+ +
Sbjct: 344 VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPP 386
Score = 116 bits (293), Expect = 1e-28
Identities = 60/363 (16%), Positives = 105/363 (28%), Gaps = 61/363 (16%)
Query: 36 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGP 95
D R + + IK+++ D+G Y ++ G + ++I P
Sbjct: 48 KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQ 107
Query: 96 LDVSEITKHT----CTLHWNPP-----KYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
+ C + NPP + D + +T
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPASIHWRRDK---------LVLPAKNTTNLKTYSTGRKM 158
Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP---YDKPSPPGIPVVTQVGG 203
+ ++ ++ A N G + D PS P + ++
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGT---------RFQEYILALADVPSSPYGVKIIELSQ 209
Query: 204 DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFR 263
+S++KP GG I Y +D EV S+ W+ V + + + NL YE R
Sbjct: 210 TTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH-GVQTMVVLNNLEPNTTYEIR 268
Query: 264 VYAQNEAGLSLPSSASNSVQIKDPMAA-KAPEIIVPLRNANAIQ-------NHNAQFQCT 315
V A N G S + P+ P I + + + + A
Sbjct: 269 VAAVNGKGQGDYSKI--EIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAP---- 322
Query: 316 ITG-----CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370
I K +++ + H I L Y E A N+
Sbjct: 323 ILEYIVKYRSKDKEDQWL-EKKVQGNKDHIILEH-----LQWTMGY-----EVQITAANR 371
Query: 371 GGV 373
G
Sbjct: 372 LGY 374
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 208 bits (531), Expect = 2e-64
Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 1/195 (0%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT 347
M+ +AP I +++ AQ C I G P P I W + +E+ S ++ + ++G T
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
+TL + + D Y C A N+ G T ++L++ P+F+ ++ Y G +
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122
Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASN-VDTAPYRVVAEND 466
+ + + G P P +TW+ +++++ + +E +E + L +++ Y+V N
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 467 LGMDSAIVKIQISDR 481
G AI+ ++I D+
Sbjct: 183 FGTVDAILDVEIQDK 197
Score = 75.1 bits (185), Expect = 8e-16
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
AP + GE + G P P I WYR + + + + + R
Sbjct: 7 APGIRKEMK---DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH 63
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
LT+ D Y +A N++G K+ + P +++
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKE 111
Score = 55.5 bits (134), Expect = 4e-09
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-R 59
+ Y G ++ + Y G ++ +++Q+ + + Y + +K + R
Sbjct: 109 LKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQR 168
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINIT 86
K AG Y V LSN G+V + I
Sbjct: 169 KTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 50.8 bits (122), Expect = 2e-07
Identities = 12/77 (15%), Positives = 28/77 (36%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
++ + G+ + ++K + + + +ED G YT +N G V + + +
Sbjct: 38 DIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97
Query: 86 TGLPGPPIGPLDVSEIT 102
P G +
Sbjct: 98 QATPQFHPGYPLKEKYY 114
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 204 bits (521), Expect = 9e-63
Identities = 81/198 (40%), Positives = 112/198 (56%), Gaps = 6/198 (3%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
PGPP V E+TK + TL W+PP DGG K+ +Y+VE+R+ + + ++T CH T++
Sbjct: 6 PGPPQDLK-VKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSW 64
Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNL 208
V L EG Y F V+A NE G+G P E ++ ++P PPG + V + V+L
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYGIGLPAE---TAESVKASERPLPPGKITLMDVTRNSVSL 121
Query: 209 SWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN 268
SW+KP DGGSRI GY ++ GSD W ++ I LI+G +Y FRV AQN
Sbjct: 122 SWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--VKVTEATITGLIQGEEYSFRVSAQN 179
Query: 269 EAGLSLPSSASNSVQIKD 286
E G+S P S V KD
Sbjct: 180 EKGISDPRQLSVPVIAKD 197
Score = 118 bits (299), Expect = 4e-31
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 459 YRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN 515
+RV+AEN+ G+ ++ S+RP PP T+ D+ +S++L W P DGGS I
Sbjct: 77 FRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILG 136
Query: 516 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
YIVE + W + T ITGL G +Y FRV A+N G SDP S +
Sbjct: 137 YIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA 195
Score = 112 bits (281), Expect = 1e-28
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTM 539
D P PPQ V+++ S+ L W P+ DGGS I NYIVEKRE ++ V T
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 540 A-ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ L G Y FRV AEN YG P+ T++ +
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKA 99
Score = 108 bits (271), Expect = 3e-27
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
D P PP V +V V L+WD PL DGGS+I+ Y ++K E A+ V S
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
+ L EG Y FRV A+NE G+ LP+ + SV+ +
Sbjct: 64 -WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER 102
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 190 bits (485), Expect = 1e-57
Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 5/197 (2%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF--AEGD 346
A AP LRN N NA C +TG PKP + W + +EI + +G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD--TAYFDKGE 404
+ LII SV DA Y RA N+GG S A L + K ++P + +GE
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILT-IRDASNVDTAPYRVVA 463
V +KIPF+G P P ITW + ++I++ GH+ V + L D Y V A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 464 ENDLGMDSAIVKIQISD 480
+N G+D V++ ++D
Sbjct: 181 KNRFGIDQKTVELDVAD 197
Score = 105 bits (265), Expect = 2e-26
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
++V A N+ G S + S++++ P P+ + + +A++ + +G P
Sbjct: 76 VYQVRATNQGGSV---SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP 132
Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYT-LIINSVYGVDADEYVCRAVNKGGVKSTKAE 379
P I+W KG I + + + + + N V DA YV A N+ G+ E
Sbjct: 133 DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192
Query: 380 LII 382
L +
Sbjct: 193 LDV 195
Score = 69.0 bits (169), Expect = 1e-13
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH--VETSER 442
AP F R N + TG+PKP + WYR + I + G + E
Sbjct: 4 APHFKEELR---NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDS--AIVKIQISDRPDPPQF 487
+ L I ++ D Y+V A N G S A +++++ + P+
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT 107
Score = 56.3 bits (136), Expect = 2e-09
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD-YIIIFIKEIRK 60
A++ G+ +KI ++G ++ K ++ ++ ++ V ++F + +
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER 170
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINIT 86
+DAG Y V N G T +++
Sbjct: 171 KDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 43.9 bits (104), Expect = 4e-05
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 26 EVSLTKNGR-VVQSDDRFKFTVLDD-YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83
V + G+ ++ +++ Y + I + +DA Y V +N GSVSGT ++
Sbjct: 35 IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 84 NITGLP 89
+
Sbjct: 95 EVEVPA 100
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 191 bits (487), Expect = 1e-57
Identities = 49/214 (22%), Positives = 75/214 (35%), Gaps = 12/214 (5%)
Query: 367 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 426
A + M APK P Y +G V + YP I+W+RD
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGPV----AVYTWEGNQVNITCEVFAYPSATISWFRDG 56
Query: 427 EVIESGGHFHV--ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDP 484
+++ S + ++ + + L + S D Y A N +G +S + +D P
Sbjct: 57 QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSS 116
Query: 485 PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-----GNTRFTTM 539
P VE + + + P GG I Y E R W + +
Sbjct: 117 PSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIV 175
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
I GL P Y R+ A N G + S S+ T
Sbjct: 176 TIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
Score = 143 bits (361), Expect = 1e-39
Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 8/181 (4%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL--DDYIIIFIKEIR 59
P A+Y EG+ + +S ++G+++ S + + + +
Sbjct: 25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDS 84
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGL 119
+ D G+Y N G S F + P P +D E T + ++ P+ GG+
Sbjct: 85 ENDFGNYNCTAVNRIGQESLEFILVQADTPSSP--SIDQVEPYSSTAQVQFDEPEATGGV 142
Query: 120 KVTHYVVERRDIS----MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPL 175
+ Y E R + W + + GL Y + A+N G+G
Sbjct: 143 PILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEIS 202
Query: 176 E 176
Sbjct: 203 A 203
Score = 96.0 bits (239), Expect = 8e-23
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI---C 244
D PS P I V + +D+P GG I Y + VG + W
Sbjct: 112 DTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170
Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
+ I L Y R+ A N GL S+AS
Sbjct: 171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 206
Score = 80.6 bits (199), Expect = 1e-17
Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 32/211 (15%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
+++S V M A P++ P + + C + P TISW + + +
Sbjct: 4 AAASSALVPRGSHMYA--PKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLP 60
Query: 335 PSARHH--IFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
S + I+ L + D Y C AVN+ G +S + L+ P + P
Sbjct: 61 SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTP--SSPS 118
Query: 393 RFRDTAYFDKGENVVVKI---------PFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
+ Y V+ P Y K W E + + + +
Sbjct: 119 IDQVEPY---SSTAQVQFDEPEATGGVPILKY---KAEWRAVGEEVWHSKWYDAKEASME 172
Query: 444 AILTIRDASNVDTAPY-----RVVAENDLGM 469
I+TI P R+ A N G+
Sbjct: 173 GIVTIVGLK-----PETTYAVRLAALNGKGL 198
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 199 bits (508), Expect = 1e-56
Identities = 102/610 (16%), Positives = 208/610 (34%), Gaps = 93/610 (15%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+ G+ ++ G + ++ K ++S +K ++ + I ++
Sbjct: 12 LEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHS 71
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPI---GPLDVSEITKHT----CTLHWNPP- 113
D G+YT NS G+V+ + + I PP DV E C ++ + P
Sbjct: 72 DVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPL 131
Query: 114 ----KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNEN 169
DG L + + ++ S + T + + ++ A N
Sbjct: 132 QVSWYKDGEL-----LKDDANLQ------TSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 170 G---MGPPL----EGINPIKAKSPYDKPSPPGIPVV--TQVGGD-FVNLSW---DKPLDD 216
G L + P P G V G + ++W ++ +
Sbjct: 181 GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP 240
Query: 217 GGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
GG +++ + + + +G ++ YA N AG
Sbjct: 241 GG---------NYKMTLVENTAT---------LTVLKVTKGDAGQYTCYASNVAG---KD 279
Query: 277 SASNSVQIKDPMAAKAPEIIVPLR-NANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
S S + +++P P I L + Q+ + +++C I G P+ + W K EI
Sbjct: 280 SCSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 334
Query: 336 SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR 395
S++ + L + ++ D+ +Y C A N G S+ L + P F P
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 394
Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 455
+T KG +V ++ G P +++W++D + SG + + + + I + + D
Sbjct: 395 ETL---KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSAD 451
Query: 456 TAPYRVVAENDLGMDSAIVKIQISDRP---DPPQFPTV----------EDIGHDSLALVW 502
Y+ A ND+G D+ + I + P + G + +++ W
Sbjct: 452 IGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAW 511
Query: 503 RAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR 562
D G + + + T+ + P + ++ +N G
Sbjct: 512 FK---DKGEIVRES---------DNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGT 559
Query: 563 SDPSTTSDLI 572
+ L
Sbjct: 560 Q--ECFATLS 567
Score = 163 bits (415), Expect = 8e-44
Identities = 47/221 (21%), Positives = 86/221 (38%), Gaps = 12/221 (5%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
++ A N AG + S+S S+++K+P P ++ + +C + G P
Sbjct: 361 DYTCEAHNAAGSA---SSSTSLKVKEP-----PVFRKKPHPVETLKGADVHLECELQGTP 412
Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
+SW K RE+ ++ I +E ++ I +V D EY C+A N G + +
Sbjct: 413 PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI 472
Query: 381 IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-ESGGHFHVET 439
+ P+F T GE V ++ G + W++D I + +
Sbjct: 473 TLKAPPRFVKKLSDISTV---VGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISY 529
Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
SE A L A + Y +N+ G + + +
Sbjct: 530 SENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 154 bits (392), Expect = 1e-40
Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 6/202 (2%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
A + P I PL + A QC + G P+ I+W K ++ + + + + +
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD---TAYFDKGEN 405
+L+IN V D EY C+A N G ++ A L+I +PP F + G
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK---LPPSFARKLKDVHETLGFP 118
Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
V + G +++WY+D E+++ + A L I Y A N
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178
Query: 466 DLGMDSAIVKIQISDRPDPPQF 487
LG S+ K+ +S+ PP F
Sbjct: 179 PLGTASSSAKLTLSEHEVPPFF 200
Score = 47.9 bits (114), Expect = 8e-06
Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG-RVVQSDDRFKFTVLDDYIIIFIKEIRK 60
+ + G+ +++ G +P+ V+ K+ +V+ D + ++ +
Sbjct: 484 LSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINI 85
+AG YT + N +G+ T+++
Sbjct: 544 ANAGKYTCQIKNEAGTQECFATLSV 568
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 183 bits (466), Expect = 7e-51
Identities = 82/582 (14%), Positives = 144/582 (24%), Gaps = 54/582 (9%)
Query: 19 YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY-TVNLSNSSGSV 77
Y + N + + + + +I + +
Sbjct: 34 YFHVNANYIVWKTNHFTIPKEQYTI--INRTASSVTFTDIASLNIQLTCNILTFGQLEQN 91
Query: 78 SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI 137
TI P P L W+ + + L+ T++ ++ +
Sbjct: 92 VYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGR-ETHLE-TNFTLKSEWATHKFAD 148
Query: 138 C-ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIP 196
C + + V A N G K KP+PP
Sbjct: 149 CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYK---VKPNPPHNL 205
Query: 197 VVTQV--GGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS--QINIP 252
V + L+W P I Y I + W ++ A + +
Sbjct: 206 SVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQ 264
Query: 253 NLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQF 312
+L +Y FR+ E G S S P +
Sbjct: 265 DLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR--PSKAPSFWYKIDPSHTQGYR 322
Query: 313 QCTITGCPKPTISW--------LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYV 364
+ P + +R + + + + L +N D Y+
Sbjct: 323 TVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTV----NATKLTVNLTN----DRYL 374
Query: 365 CR--AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV--KIPFTGYPKPKI 420
N G KS A L I P A+ + V P K +
Sbjct: 375 ATLTVRNLVG-KSDAAVLTIPACDFQATHPVMDLKAFPKDNM-LWVEWTTPRESVKKYIL 432
Query: 421 TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAENDLGM-DSAIV 474
W ++ + E H + A V G +
Sbjct: 433 EWCVLSDKAPCITDWQQEDGTVHRTYLRGN-----LAESKCYLITVTPVYADGPGSPESI 487
Query: 475 KIQIS-DRPDPPQFPTVEDIGHDSLALVWRA-PIWDGGSNITNYIVEKREHPMSSWIRVG 532
K + P + +G + L W P+ I NY + R +
Sbjct: 488 KAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNV 547
Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
++ T ++ L+ Y R+ A G D + TT
Sbjct: 548 DSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT--FTT 587
Score = 87.4 bits (216), Expect = 3e-18
Identities = 21/178 (11%), Positives = 50/178 (28%), Gaps = 14/178 (7%)
Query: 402 KGENVVVK-------IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNV 454
N + + I W ++ I + + + + +T D +++
Sbjct: 17 LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTA--SSVTFTDIASL 74
Query: 455 DTA-PYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNI 513
+ ++ L + + I P+ P+ + + W
Sbjct: 75 NIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL--E 132
Query: 514 TNYIVEKRE--HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
TN+ ++ H + +T + E V AEN G+ +
Sbjct: 133 TNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 190
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 171 bits (435), Expect = 4e-50
Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 10/198 (5%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS----MPHWICISTTCH 144
P P +D E T + ++ P+ GG+ + Y E R + W
Sbjct: 9 PSSP--SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 66
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGD 204
+ + GL Y + A+N G+G P +PS P + G+
Sbjct: 67 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF--KTQPVREPSAPKLEGQMGEDGN 124
Query: 205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
+ ++ K DDGGS I+ Y + + S+ W+ + + +L +YE V
Sbjct: 125 SIKVNLIKQ-DDGGSPIRHYLVRYRALSSE-WKPEIRLPSGSDHVMLKSLDWNAEYEVYV 182
Query: 265 YAQNEAGLSLPSSASNSV 282
A+N+ G S +
Sbjct: 183 VAENQQGKSKAAHFVFRT 200
Score = 99.5 bits (248), Expect = 5e-24
Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 475 KIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT 534
+ +D P P VE + + + P GG I Y E R W
Sbjct: 2 PLAQADTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 60
Query: 535 RF-----TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
+ I GL P Y R+ A N G + S S+ T
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 104
Score = 98.7 bits (246), Expect = 7e-24
Identities = 41/219 (18%), Positives = 62/219 (28%), Gaps = 35/219 (15%)
Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
+ D PS P I V + +D+P GG I Y + VG + W
Sbjct: 4 AQADTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 62
Query: 245 APS---QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRN 301
S + I L Y R+ A N GL S+AS + +
Sbjct: 63 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGED 122
Query: 302 ANAIQ------NHNAQFQCTITG-----CPKPTISWLKGSREITPSARHHI--FAEGDTY 348
N+I+ + I + W R + S + Y
Sbjct: 123 GNSIKVNLIKQDDGG---SPIRHYLVRYRALSS-EWKPEIRLPSGSDHVMLKSLDWNAEY 178
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
+ + A N+ G S A + TA
Sbjct: 179 EVYV-------------VAENQQGK-SKAAHFVFRTAAA 203
Score = 92.2 bits (229), Expect = 2e-21
Identities = 37/170 (21%), Positives = 57/170 (33%), Gaps = 11/170 (6%)
Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM- 469
P Y K W E + + + + I+TI T R+ A N G+
Sbjct: 38 PILKY---KAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLG 94
Query: 470 ---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
++ K Q P P+ +S+ + DGGS I +Y+V R S
Sbjct: 95 EISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALS-S 152
Query: 527 SWIRVGNTRF--TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
W + + L +YE V AEN G+S +
Sbjct: 153 EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAA 202
Score = 82.9 bits (205), Expect = 2e-18
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
++ ++ DGG + HY+V R +S I
Sbjct: 109 EPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHV 167
Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
+++ L EY +V+A N+ G + A +
Sbjct: 168 MLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHH 206
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 168 bits (427), Expect = 5e-49
Identities = 39/209 (18%), Positives = 63/209 (30%), Gaps = 16/209 (7%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT------ 142
PP P +V+ ++ + L W P+ DG V V R +W +
Sbjct: 2 TYPP-TPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 143 ------CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI--KAKSPYDKPSPPG 194
T V L Y F ++AV N + + D P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 195 IPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-WQRVNVAICAPSQINIPN 253
+ + + V L W D I GY+ S + + + I
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 254 LIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
L YEF++ + + A S S+
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGR 209
Score = 98.7 bits (246), Expect = 8e-24
Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 11/165 (6%)
Query: 421 TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM-----DSAIVK 475
W N+ I G + ++ D T +R++A SA
Sbjct: 47 NWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFY 106
Query: 476 IQISDRPDP---PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP-MSSWIR- 530
+Q DP P+ +E+ ++ L W IT Y R + +
Sbjct: 107 LQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKA 166
Query: 531 -VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ + I L YEF++ + + S+ S T
Sbjct: 167 TIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211
Score = 93.0 bits (231), Expect = 1e-21
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 15/107 (14%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH-PMSSWIRVGNT------ 534
PP P V + +S+ L W P + G I + V+ R +W +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 535 -------RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ T ++T L P H Y FR+ A + S TS
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 107
Score = 91.4 bits (227), Expect = 3e-21
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 13/116 (11%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-WQRVNVAICAPSQ 248
PP P VT++ + V L W P +DG I + + VG WQ N I
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLP-IVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 249 IN-----------IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAP 293
+ +L Y FR+ A + S+ S ++ A
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPM 116
Score = 84.5 bits (209), Expect = 8e-19
Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 4/111 (3%)
Query: 78 SGTFTINITGLPGPPIGP--LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI-SMP 134
S F + P P L++ E ++ LHW+ +T Y R S
Sbjct: 102 SAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAG 161
Query: 135 HWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
+ H +F + L Y F + + + +
Sbjct: 162 EYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 178 bits (452), Expect = 2e-48
Identities = 71/540 (13%), Positives = 142/540 (26%), Gaps = 75/540 (13%)
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGL 119
E +G SN G G+P P L +E+ + W+ ++ +
Sbjct: 132 NECSGVKKCC-SNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSK-FNISI 189
Query: 120 KVTHYVVERRDISMPH--------WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM 171
+ YVV+RR H W ++ T D + + + Y F V AVN +G
Sbjct: 190 EPVIYVVQRRWNYGIHPSEDDATHWQTVAQT-TDERVQLTDIRPSRWYQFRVAAVNVHGT 248
Query: 172 GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDF-----VNLSWDKPLDDGGSRIQGYWI 226
++ P P + + V + WD P + + Y +
Sbjct: 249 RGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKV 307
Query: 227 ------DKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
+ +R + + + L Y + A G + SA
Sbjct: 308 FWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKV 367
Query: 281 SVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH 340
S+ A E +V R Q + + G ++ +
Sbjct: 368 SLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT 427
Query: 341 IFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYF 400
+ Y + A T II+ F+ +
Sbjct: 428 EDPTVNRYHVRWFPEACAHNRTTGSEAS----SGMTHENYIILQDLSFSCKYKVTVQPIR 483
Query: 401 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
K + + FT P ++ H +
Sbjct: 484 PKSHSKAEAVFFTTPP---------CSALKGKSHKPIGCL-------------------- 514
Query: 461 VVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEK 520
++ V ++ +P+ + + + W+ + +T + V
Sbjct: 515 --------GEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTW 566
Query: 521 RE-----------HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
E + + S ++ + + + L P Y V G + +
Sbjct: 567 AEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKT 626
Score = 94.6 bits (234), Expect = 2e-20
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 9/128 (7%)
Query: 455 DTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNIT 514
+ + + + P + ++ L + W + +
Sbjct: 134 CSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKF-NISIEPV 192
Query: 515 NYIVEKR--------EHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
Y+V++R E + W V T + +T + P Y+FRV A NV+G +
Sbjct: 193 IYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFT 252
Query: 567 TTSDLITT 574
S +
Sbjct: 253 APSKHFRS 260
Score = 86.9 bits (214), Expect = 4e-18
Identities = 40/258 (15%), Positives = 70/258 (27%), Gaps = 45/258 (17%)
Query: 79 GTFTINITGLPGPPIGPLDVSEITKH----TCTLHWNPPKYDGGLKVTHYVVERR----- 129
G + P PL+V ++W + V Y V
Sbjct: 389 GGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPT---VNRYHVRWFPEACA 445
Query: 130 -DISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP--------PLEGINP 180
+ + T H+ I+Q L+ +Y V + P
Sbjct: 446 HNRTTGSEASSGMT-HENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALK 504
Query: 181 IKAKSPYD--------------KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI 226
K+ P KP + Q + SW + + G+ +
Sbjct: 505 GKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQV 564
Query: 227 DKHEVGSDAWQ-RVNVAICAPSQIN--------IPNLIEGRQYEFRVYAQNEAGLSLPSS 277
EV +++ Q + +I + SQI +PNL Y V G +
Sbjct: 565 TWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATI 624
Query: 278 ASNSVQIKDPMAAKAPEI 295
+ P +A +
Sbjct: 625 KTFRTPELPPSSAHRSHL 642
Score = 30.3 bits (67), Expect = 2.3
Identities = 8/60 (13%), Positives = 14/60 (23%), Gaps = 2/60 (3%)
Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE 519
V G + PP + H ++ G I N ++
Sbjct: 610 EVQVLTPGG-EGPATIKTFRTPELPPSSAHRSHLKHRHPHH-YKPSPERYGKPIPNPLLG 667
Score = 28.4 bits (62), Expect = 8.9
Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 5/66 (7%)
Query: 71 SNSSG-SVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR 129
G + T LP + H H+ P G + + ++
Sbjct: 614 LTPGGEGPATIKTFRTPELPPSSAHRSHLKHRHPH----HYKPSPERYGKPIPNPLLGLD 669
Query: 130 DISMPH 135
H
Sbjct: 670 STRTGH 675
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 168 bits (428), Expect = 4e-48
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 12/219 (5%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNA-NAIQNHNAQFQCTITGC 319
++ YA N AG S S + +++P P I L + Q+ + +++C I G
Sbjct: 75 QYTCYASNVAG---KDSCSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRYECKIGGS 126
Query: 320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 379
P+ + W K EI S++ + L + ++ D+ +Y C A N G S+
Sbjct: 127 PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS 186
Query: 380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET 439
L + P F P +T KG +V ++ G P +++W++D + SG + + +
Sbjct: 187 LKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS 243
Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+ I + + D Y+ A ND+G + + I +
Sbjct: 244 ENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 164 bits (417), Expect = 1e-46
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 5/196 (2%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
P + + + + F+C +TG I+W K +REI P + + +T TL
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIP 411
+ V DA +Y C A N G S A+L + P+F + + E+ +
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL--EPSRIVKQDEHTRYECK 122
Query: 412 FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS 471
G P+ K+ WY+D I+ F + E A+L + + S D+ Y A N G S
Sbjct: 123 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182
Query: 472 AIVKIQISDRPDPPQF 487
+ +++ +PP F
Sbjct: 183 SSTSLKVK---EPPVF 195
Score = 62.4 bits (152), Expect = 7e-11
Identities = 20/88 (22%), Positives = 45/88 (51%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P ++ + G++ K G P++++ K+ R ++ +K T++++ + + ++ K
Sbjct: 12 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKG 71
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLP 89
DAG YT SN +G S + + + P
Sbjct: 72 DAGQYTCYASNVAGKDSCSAQLGVQEPP 99
Score = 55.9 bits (135), Expect = 9e-09
Identities = 20/86 (23%), Positives = 38/86 (44%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P+ + +G + ++ G P +VS K+ R ++S ++K + I I +
Sbjct: 199 PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 258
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITG 87
D G+Y SN GS + +I +
Sbjct: 259 DIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 54.0 bits (130), Expect = 4e-08
Identities = 20/109 (18%), Positives = 49/109 (44%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
+ + + + ++T+ + G ++V K+ +Q +F+ + ++ ++ + +
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV 164
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
ED+GDYT N++GS S + ++ + P P V + L
Sbjct: 165 EDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE 213
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 163 bits (414), Expect = 3e-47
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 8/196 (4%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARH--HIFAEG 345
M +AP PL++ ++ A F+ I+G P P +SW + + I+ S I
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MTAPKFNVPPRFRDTAYFDK 402
L I +V ++ Y +A N G ++ AEL++ P F + + +
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ---SMTVRQ 117
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
G V +++ TG P P + +YRD I+S F + L I +A D+ Y V
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 463 AENDLGMDSAIVKIQI 478
A N +G ++ ++ +
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 112 bits (283), Expect = 5e-29
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
+ + A N +G A+++ ++ P + L++ Q + Q +TG P
Sbjct: 77 RYSLKATNGSG-----QATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP 131
Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
P + + + EI S I EGD Y+L+I Y D+ Y A N G ++ AEL
Sbjct: 132 TPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Query: 381 II 382
++
Sbjct: 192 LV 193
Score = 75.5 bits (186), Expect = 7e-16
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG--HFHVETSER 442
AP F P + +G + +G+P P+++W+RD +VI + + S+
Sbjct: 5 APTFTQPLQSVVVL---EGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
A LTI + ++ Y + A N G ++ ++ + PP F
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106
Score = 57.8 bits (140), Expect = 8e-10
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
++ + +G ++++ G V ++G +QS F+ + D + I E E
Sbjct: 110 LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE 169
Query: 62 DAGDYTVNLSNSSGSVSGTFTINI 85
D+G Y+VN +NS G + T + +
Sbjct: 170 DSGTYSVNATNSVGRATSTAELLV 193
Score = 53.2 bits (128), Expect = 3e-08
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVL--DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
G EVS ++G+V+ + + D + I + K ++G Y++ +N SG +
Sbjct: 31 GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT 90
Query: 79 GTFTINITGLPGPPI 93
T + + PP
Sbjct: 91 STAELLVKAETAPPN 105
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 160 bits (407), Expect = 7e-42
Identities = 75/329 (22%), Positives = 118/329 (35%), Gaps = 24/329 (7%)
Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNA 310
I ++ + + ++ + +N+ SA S ++K P I + +
Sbjct: 393 IESVKKEDKGMYQCFVRNDRE-----SAEASAELKLGGRFDPPVIRQAFQEETMEPGPSV 447
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHI-----FAEGDTYTLIINSVYGVDADEYVC 365
+C G P P ISW ++I + R+ + L I SV+ D Y C
Sbjct: 448 FLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507
Query: 366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 425
A +K GV A+L + P + A GE ++V P GYP I W RD
Sbjct: 508 IAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVA----GETLIVTCPVAGYPIDSIVWERD 563
Query: 426 NEVIESGGHFHVETSERHAILTIRDAS-NVDTAPYRVVAENDLGMD---SAIVKIQISDR 481
N + V + L I + N D A Y VA+N G S V++ + R
Sbjct: 564 NRALPINRKQKVFPN---GTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT--RFTTM 539
P F L L P D NI + ++ + I R + +
Sbjct: 621 IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID-WTLDGQAISEDLGITTSRVGRRGSVL 679
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTT 568
I + H F +A N+ G +T
Sbjct: 680 TIEAVEASHAGNFTCHARNLAGHQQFTTP 708
Score = 159 bits (403), Expect = 2e-41
Identities = 99/611 (16%), Positives = 181/611 (29%), Gaps = 97/611 (15%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFT--VLDDYIIIFIKEIR 59
+ + G K V + IK+
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGP----LDVSEITKHTCTLHWNPPKY 115
ED+G Y ++NS G S + +T I P +D TC NP K
Sbjct: 315 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK- 373
Query: 116 DGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPL 175
V+ + ++ H ++ ++ + + + ++ N+
Sbjct: 374 ----TVSWM---KDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRES---A 415
Query: 176 EGINPIKAKSPYDKPS--PPGIPVVTQVGGDFV-----------NLSW---DKPLDDGGS 219
E +K +D P + G +SW K + +
Sbjct: 416 EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDR 475
Query: 220 RIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
G Q V V S +NI ++ ++ A+++ G A
Sbjct: 476 YQVG-------------QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG-----VAE 517
Query: 280 NSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARH 339
+S ++ I + + C + G P +I W + +R + + +
Sbjct: 518 HSAKLN----VYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQ 573
Query: 340 HIFAEGDTYTLIINSVY-GVDADEYVCRAVNKGGVKSTK-AELIIMTAPKFNVPPRFRDT 397
+F G TLII +V D Y C A N+ G + E+ +M P+ +P F +
Sbjct: 574 KVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI-IPFAFEEG 629
Query: 398 AYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVE-TSERHAILTIRDASNVD 455
G+ + + G P I W D + I R ++LTI
Sbjct: 630 -PAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASH 688
Query: 456 TAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDI-------------GHDSLALVW 502
+ A N G + + P PT + G + W
Sbjct: 689 AGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW 748
Query: 503 RAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR 562
+ G Y ++ S IRV T+ + + ++ + A N G
Sbjct: 749 K---KAVGDTPGEY----KDLKKSDNIRVEE---GTLHVDNIQKTNEGYYLCEAINGIGS 798
Query: 563 SDPSTTSDLIT 573
+ +I+
Sbjct: 799 G--LSAVIMIS 807
Score = 148 bits (376), Expect = 6e-38
Identities = 67/454 (14%), Positives = 131/454 (28%), Gaps = 45/454 (9%)
Query: 55 IKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPI--GPLDVSEITKH-----TCT 107
+ R + + + GS + GP P + + + C
Sbjct: 3 MPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECK 62
Query: 108 LHWNPP------KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLF 161
NP + DG + + + + +
Sbjct: 63 ASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV-------Y 115
Query: 162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRI 221
+A N+ G + ++A + V + G+ + P
Sbjct: 116 ACLARNQ--FGSIISRDVHVRAVVAQYYEADVNKEHVIR--GNSAVIKCLIPSFVADFVE 171
Query: 222 QGYWI--DKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQY-EFRVYAQNEAGLSLPSSA 278
W ++ A + +++I + Y ++ ++ SA
Sbjct: 172 VVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA 231
Query: 279 S-NSVQIKDPMAAKAPEIIVPLRNAN--AIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
+ + I +P+++ P+++ + + C G P P W K T
Sbjct: 232 TKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTR 291
Query: 336 SARHHIFAEGDTY--TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
+ TLII D+ +Y+C N G +S + L + + P
Sbjct: 292 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP 351
Query: 394 FRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASN 453
T D G V +TG P ++W +D + I +L I
Sbjct: 352 ---TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKK 398
Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
D Y+ ND A ++++ R DPP
Sbjct: 399 EDKGMYQCFVRNDRESAEASAELKLGGRFDPPVI 432
Score = 146 bits (370), Expect = 4e-37
Identities = 74/527 (14%), Positives = 143/527 (27%), Gaps = 72/527 (13%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-----IK 56
N + +++ +G+ E+ ++ D + D ++F
Sbjct: 46 TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED 105
Query: 57 EIRKEDAGDYTVNLSNSSGSV-SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKY 115
++ A Y N GS+ S + I ++ + P +
Sbjct: 106 YRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF 165
Query: 116 DGGLKVT-HYVVERRDISMPHWICIS--TTCHDTTFIVQGLTEG-QEYLFHVMAVNENGM 171
+ + + P ++ + + +
Sbjct: 166 VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG 225
Query: 172 GPPLEG-INPIKAKSPYDKPSPPGIPV-----VTQVGGDFVNL------------SWDKP 213
L + P P + + T G + L W K
Sbjct: 226 ETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYK- 284
Query: 214 LDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLS 273
+G +R Q ++ + I + + ++ N G
Sbjct: 285 FIEGTTRKQAVVLNDRVKQVSGT------------LIIKDAVVEDSGKYLCVVNNSVG-- 330
Query: 274 LPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI 333
S + + P + A F C TG P T+SW+K + I
Sbjct: 331 -GESVETVLTVTAP-----LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 384
Query: 334 TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MTAPKFNV 390
S L I SV D Y C N AEL + P
Sbjct: 385 GHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQ 434
Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV-----ETSERHAI 445
+ + G +V +K G P P+I+W D + I + + V + +
Sbjct: 435 AFQ---EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSY 491
Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP--DPPQFPTV 490
L I D Y+ +A++ +G+ K+ + P + +
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAI 538
Score = 117 bits (295), Expect = 1e-27
Identities = 57/325 (17%), Positives = 102/325 (31%), Gaps = 49/325 (15%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI---T 317
+ A+N+ G S S V ++ A A + + I+ ++A +C I
Sbjct: 114 VYACLARNQFG----SIISRDVHVR---AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFV 166
Query: 318 GCPKPTISWLKGSREI-----TPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRAVNKG 371
+SW E ++ + G L I V D Y CR ++
Sbjct: 167 ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRL 223
Query: 372 G---VKSTKAELIIMTAPKFNVPPRFRDTAYFD-----KGENVVVKIPFTGYPKPKITWY 423
S +++T P + P+ A FD + + P GYP P WY
Sbjct: 224 TGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWY 283
Query: 424 RDNEVIESGGHFHVET--SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
+ E + + L I+DA D+ Y V N +G +S + ++
Sbjct: 284 KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP 343
Query: 482 PDPPQFPTVE--DIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTRF 536
P + D G V+ SW++ G
Sbjct: 344 LSAKIDPPTQTVDFGRP---AVFTCQ------------YTGNPIKTVSWMKDGKAIGHSE 388
Query: 537 TTMAITGLSPGHQYEFRVYAENVYG 561
+ + I + + ++ + N
Sbjct: 389 SVLRIESVKKEDKGMYQCFVRNDRE 413
Score = 116 bits (293), Expect = 1e-27
Identities = 66/399 (16%), Positives = 131/399 (32%), Gaps = 37/399 (9%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL-----DDYIIIFIK 56
+ G + +K G+ E+S +G+ + ++DR++ D + I
Sbjct: 436 FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNIT 495
Query: 57 EIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYD 116
+ D G Y + G + +N+ GLP + + T +
Sbjct: 496 SVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-YIRQMEKKAIVAGETLIVT------- 547
Query: 117 GGLKVTHYVV-----ERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM 171
V Y + ER + ++P + T I + + +A N+ G
Sbjct: 548 --CPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605
Query: 172 GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI-DKHE 230
+ + P G ++ L P D I W D
Sbjct: 606 SARGSLEVQVMVLPRIIPFAFEEGPAQV---GQYLTLHCSVPGGDLPLNID--WTLDGQA 660
Query: 231 VGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
+ D + S + I + F +A+N AG + + + P
Sbjct: 661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG---HQQFTTPLNVYVP--- 714
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG---DT 347
P I+ + Q +A+ +C G PKP ++W K + + ++ +
Sbjct: 715 --PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
TL ++++ + Y+C A+N G + +I + A
Sbjct: 773 GTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811
Score = 106 bits (266), Expect = 3e-24
Identities = 55/337 (16%), Positives = 94/337 (27%), Gaps = 55/337 (16%)
Query: 262 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQFQCTITGCP 320
F A G S + + D K P + P + + A+ +C +G P
Sbjct: 14 FAAVALIACG-----SQTLAANPPDA-DQKGPVFLKEPTNRIDFSNSTGAEIECKASGNP 67
Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSV------YGVDADEYVCRAVNKGG-V 373
P I W++ D L+ V A Y C A N+ G +
Sbjct: 68 MPEIIWIRSDGTAVGDVPGLRQISSD-GKLVFPPFRAEDYRQEVHAQVYACLARNQFGSI 126
Query: 374 KSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK---IPFTGYPKPKITWYRDNEVIE 430
S + + A + G + V+K F ++W+ D E
Sbjct: 127 ISRDVHVRAVVAQYYEADVNKEHVIR---GNSAVIKCLIPSFVADFVEVVSWHTDEEENY 183
Query: 431 SGGHFHVETSERHAI-----LTIRDASNVDTAP-YRVVAENDLGMD---SAIVKIQISDR 481
E ++ + L IR+ D Y+ ++ L + SA +
Sbjct: 184 FP---GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE 240
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNY-IVEKREHPMSSWIRVG-------- 532
P P V + + G S + + P+ W +
Sbjct: 241 PISSAVPKVVSLAKFDMKTY------SGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQA 294
Query: 533 ---NTRFT----TMAITGLSPGHQYEFRVYAENVYGR 562
N R T+ I ++ N G
Sbjct: 295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331
Score = 72.7 bits (178), Expect = 2e-13
Identities = 30/253 (11%), Positives = 67/253 (26%), Gaps = 20/253 (7%)
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAE--LIIMTAPKFNVPPRFRDTAYFDKGENVV 407
+ + + + A+ G ++ A P F P + F
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEP--TNRIDFSNSTGAE 58
Query: 408 VKIPFTGYPKPKITWYRDN-EVIESGGHFHVETSERHAILTIRDASNVDTAP------YR 460
++ +G P P+I W R + + +S+ L D Y
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK--LVFPPFRAEDYRQEVHAQVYA 116
Query: 461 VVAENDLGMD-SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE 519
+A N G S V ++ E + + A++ +
Sbjct: 117 CLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 176
Query: 520 KREHPMSSWIRVGNTRFTTMA-----ITGLSPGHQY-EFRVYAENVYGRSDPSTTSDLIT 573
E + ++ + I + P Y ++ ++ + +
Sbjct: 177 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236
Query: 574 TYGELLSGMEAPI 586
E +S +
Sbjct: 237 VITEPISSAVPKV 249
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 152 bits (385), Expect = 7e-42
Identities = 57/234 (24%), Positives = 90/234 (38%), Gaps = 16/234 (6%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
AQN G + A +V +D + + P I + + + A C +G P P I+
Sbjct: 83 AQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEIT 141
Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAELIIM- 383
W K + PSA + + + L I S D +Y C A N GV+ S+ A L +
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
Query: 384 --TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
AP+F++ P + G NV + G P P + W + E + V
Sbjct: 202 QNVAPRFSILPMSHEIM---PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR-- 256
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGH 495
+ D+A Y VA + LG+ A+ +I + P H
Sbjct: 257 ----NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH--HHHHH 304
Score = 127 bits (320), Expect = 6e-33
Identities = 45/204 (22%), Positives = 78/204 (38%), Gaps = 7/204 (3%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYT 349
+ P I ++ + A F C TG PKP ++W K +++ I F E
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 350 LIINSVYGV-DADEYVCRAVNKGGVKSTKAELIIMTAPKF-NVPPRFRDT---AYFDKGE 404
L I + D + Y C A N G + A+L ++ + + P ++
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAE 464
+ +G P P+ITW++D ++ R L I + D Y VA
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT 184
Query: 465 NDLGM-DSAIVKIQISDRPDPPQF 487
N G+ S+ + + + P+F
Sbjct: 185 NSAGVRYSSPANLYVRVQNVAPRF 208
Score = 49.4 bits (118), Expect = 1e-06
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
G V + + +D ++ +D+ +YT +S G +
Sbjct: 231 GSPMPYVKWMQGAEDLTPEDDMPVGRN------VLELTDVKDSANYTCVAMSSLGVIEAV 284
Query: 81 FTINITGLPGPPIGPLD 97
I + LP
Sbjct: 285 AQITVKSLPKAGTKHHH 301
Score = 41.3 bits (97), Expect = 6e-04
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 2/101 (1%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-IKEIR- 59
P G GD V+ K G+ V S + + I+ +R
Sbjct: 13 PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRT 72
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSE 100
D Y NS G ++ + + P G ++
Sbjct: 73 PRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
Score = 39.0 bits (91), Expect = 0.003
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 26 EVSLTKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS-VSGTFTI 83
E++ K+ V L + I+ + D G Y +NS+G S +
Sbjct: 139 EITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 84 NITGLPGPP---IGPLDVSEITKHTCTLH 109
+ P I P+ + +
Sbjct: 198 YVRVQNVAPRFSILPMSHEIMPGGNVNIT 226
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 159 bits (402), Expect = 2e-41
Identities = 78/623 (12%), Positives = 157/623 (25%), Gaps = 96/623 (15%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDD---YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
++ S+ R + T D + I ++ D G Y + +
Sbjct: 58 DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY 117
Query: 83 INITGLP-----GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI 137
+ P G + ++E T + L V+ +P
Sbjct: 118 VQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGS--ISNLNVSLCARYPEKRFVPDGN 175
Query: 138 CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPV 197
IS F + + A + + I + YD P +
Sbjct: 176 RISWD-SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI 234
Query: 198 VTQVGGDF-------------VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
VG ++ +W+ P + K + GS+ + +
Sbjct: 235 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL----- 289
Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANA 304
S + I + Q + A + + NS ++ A
Sbjct: 290 --STLTIDGVTRSDQGLYTCAASSGLM-----TKKNSTFVRVHEKPFVAFGSGMESLVEA 342
Query: 305 IQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYV 364
+ G P P I W K + + + L I V D Y
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEVSERDTGNYT 397
Query: 365 CRAVNKGG--VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-KIT 421
N +S L++ P+ + G + P P I
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 457
Query: 422 WYRD---------------------------------NEVIESGGHFHVETSERHAILTI 448
WY N++ + F + + + T+
Sbjct: 458 WYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTL 517
Query: 449 RDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAP--- 505
+ +A Y+ A N +G ++ ++ P+ P ++ +S++L A
Sbjct: 518 VIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRST 577
Query: 506 ------IWDGGSNITNYIVEKREHPMSSW----------IRVGNTRFTTMAITGLSPGHQ 549
G + ++ E + M + S Q
Sbjct: 578 FENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQ 637
Query: 550 YEFRVYAENVYGRSDPSTTSDLI 572
++ A++ + L
Sbjct: 638 GDYVCLAQDRKTKKRHCVVRQLT 660
Score = 152 bits (386), Expect = 2e-39
Identities = 87/566 (15%), Positives = 158/566 (27%), Gaps = 97/566 (17%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD----------RFKFTVLDDYI 51
+ + + G+ + + + + + + +
Sbjct: 231 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 290
Query: 52 IIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGP--LDVSEITKH----- 104
+ I + + D G YT S+ + + + + P G + E T
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 350
Query: 105 TCTLHWNPP-----KYDGGLKVTHYVVERRDISMPHWICI-STTCHDT---TFIVQGLTE 155
PP +G + I H + I + DT T I+
Sbjct: 351 PAKYLGYPPPEIKWYKNGIP-----LESNHTIKAGHVLTIMEVSERDTGNYTVILT-NPI 404
Query: 156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYD----------------KPSPPGI---- 195
+E HV+++ PP I SP D P P I
Sbjct: 405 SKEKQSHVVSLVVYV--PPQ--IGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYW 460
Query: 196 ---PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIP 252
V+++ P ++ S +K EV + + + S + I
Sbjct: 461 QLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQ 520
Query: 253 NLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQF 312
Y + A N+ G S + PEI + + + +
Sbjct: 521 AANVSALY--KCEAVNKVG---RGERVISFHVTRG-----PEITLQ-PDMQPTEQESVSL 569
Query: 313 QCTITGCPKPTISWLKGSREITP--------------------SARHHIFAEGDTYTLII 352
CT ++W K + P +A + D + +
Sbjct: 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMEL 629
Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDT---AYFDKGENVVVK 409
+ D +YVC A ++ K + + V P GE++ V
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER--VAPTITGNLENQTTSIGESIEVS 687
Query: 410 IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
+G P P+I W++DNE + ++ R+ LTIR D Y A + LG
Sbjct: 688 CTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIRRVRKEDEGLYTCQACSVLGC 745
Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGH 495
I + H
Sbjct: 746 AKVEAFFIIEGAQEKTNLERTHHHHH 771
Score = 127 bits (319), Expect = 8e-31
Identities = 65/570 (11%), Positives = 142/570 (24%), Gaps = 82/570 (14%)
Query: 55 IKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKH-------TCT 107
++ + + ++ + +++ P + +T TC
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLD------LPRLSIQKDILTIKANTTLQITCR 54
Query: 108 LHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVN 167
+ + S T + + +
Sbjct: 55 GQRDL-------DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRE 107
Query: 168 ENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID 227
+ + ++ G+ +T+ V + P S +
Sbjct: 108 TDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVI----PCLGSISNLNVSLCA 163
Query: 228 KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
++ ++ + IP+ + A+ S S V +
Sbjct: 164 RYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE-SYQSIMYIVVVVGYR 222
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW------LKGSREITPSARHHI 341
+ ++ P CT I + K + +
Sbjct: 223 IY---DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 279
Query: 342 FAEGDTY----TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDT 397
+ + TL I+ V D Y C A + K + + P
Sbjct: 280 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESL 339
Query: 398 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTA 457
GE V + + GYP P+I WY++ +ES LTI + S DT
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV-----LTIMEVSERDTG 394
Query: 458 PYRVVAENDLGMD--SAIVKIQISDRPDPPQFPTVEDI---------------------- 493
Y V+ N + + S +V + + P + + +
Sbjct: 395 NYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPH 454
Query: 494 ---------------GHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTT 538
++++ P + S K E + + + T
Sbjct: 455 HIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTV 514
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTT 568
+ + ++ A N GR + +
Sbjct: 515 STLVIQAANVSALYKCEAVNKVGRGERVIS 544
Score = 125 bits (314), Expect = 3e-30
Identities = 72/451 (15%), Positives = 135/451 (29%), Gaps = 77/451 (17%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
M + + G+ ++ Y G P E+ KNG ++S+ + +++ I E+ +
Sbjct: 336 MESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHT----IKAGHVLT-IMEVSE 390
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKH---------TCTLHWN 111
D G+YTV L+N + +++ P IG + TCT++
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAI 450
Query: 112 PP------KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMA 165
PP + + + + ++ P+ + D + ++
Sbjct: 451 PPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALI--- 507
Query: 166 VNENGMGPPLEGINPIKAK----------------------SPYDKPSPPGIPVVTQVGG 203
G + + A P P +
Sbjct: 508 ---EGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQ 564
Query: 204 DFVNLS------------WDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
+ V+L W K G D ++N + + S +I
Sbjct: 565 ESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDI 624
Query: 252 PNLI--------EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNAN 303
+ +G Y AQ+ + + + AP I L N
Sbjct: 625 LIMELKNASLQDQG-DYVCL--AQDRKT-KKRHCVVRQLTVLER---VAPTITGNLENQT 677
Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
+ + CT +G P P I W K + + + + + L I V D Y
Sbjct: 678 TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLY 735
Query: 364 VCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 394
C+A + G +A II A + R
Sbjct: 736 TCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 145 bits (368), Expect = 1e-40
Identities = 45/207 (21%), Positives = 69/207 (33%), Gaps = 10/207 (4%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYT 349
P + + A F C TG P+P I W K ++++ I F +G
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 350 LIINSVYGV-DADEYVCRAVNKGGVKSTKAELIIMTAPKF-NVPPRFRD---TAYFDKGE 404
L I + D Y C A N G S L ++ + P ++
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTR 124
Query: 405 NVVVKIPFTGYPKPKITWYRDNEVI---ESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
+ +G P P+ITW++D + + G SE L I + D Y
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Query: 462 VAENDLGMD-SAIVKIQISDRPDPPQF 487
VA N G SA + +
Sbjct: 185 VATNSAGTRYSAPANLYVRGTKHHHHH 211
Score = 100 bits (250), Expect = 3e-24
Identities = 29/132 (21%), Positives = 43/132 (32%), Gaps = 5/132 (3%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
+ A N G + S +V +D + P I + + + A C +G P
Sbjct: 78 IYECVASNNVG-EISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 321 KPTISWLKGSREITPS---ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-ST 376
P I+W K + S R L I D +Y C A N G + S
Sbjct: 137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196
Query: 377 KAELIIMTAPKF 388
A L +
Sbjct: 197 PANLYVRGTKHH 208
Score = 43.7 bits (103), Expect = 6e-05
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
GD ++ K G+ V + D ++ D Y SN+ G +S
Sbjct: 32 GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEIS 91
Query: 79 GTFTINITGLPGPPIGP 95
+ + + P G
Sbjct: 92 VSTRLTVLREDQIPRGF 108
Score = 41.3 bits (97), Expect = 3e-04
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 26 EVSLTKNGRVVQSDD---RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS-VSGTF 81
E++ K+ V + + R K + + I++ + D G Y +NS+G+ S
Sbjct: 139 EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPA 198
Query: 82 TINITGLP 89
+ + G
Sbjct: 199 NLYVRGTK 206
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 143 bits (362), Expect = 6e-40
Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 15/196 (7%)
Query: 292 APEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 349
P I +P + NA A + F C +G P+P ISW + + I + ++ + +G
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTE 59
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 409
L + ++ D YVCRA NK G +A L + P +T Y + V +
Sbjct: 60 LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLK--NETTY--ENGQVTLV 115
Query: 410 IPFTGYPKPKITWYRDNEVIE-------SGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
G P P+ITW R + G V+ + L I+D D+ Y
Sbjct: 116 CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 175
Query: 463 AENDLGMDSAIVKIQI 478
A + +G + + I
Sbjct: 176 AASRIGGHQKSMYLDI 191
Score = 72.5 bits (178), Expect = 7e-15
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
+ P ++P + + ++GE + +G P+P I+W+R+ ++IE + ++ S
Sbjct: 1 SMPAISMPQKSFNA-TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE 59
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
LT+R+ N D PY A N G D +Q+ +P
Sbjct: 60 --LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96
Score = 46.0 bits (109), Expect = 7e-06
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
+S +NG++++ ++++ + + + + I D G Y +N +G + +
Sbjct: 35 AISWFRNGKLIEENEKYILKGSNTELTV--RNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Query: 86 TGLP 89
P
Sbjct: 93 FVQP 96
Score = 36.7 bits (85), Expect = 0.010
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 39 DDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
D R + + IK+++ D+G Y ++ G + ++I
Sbjct: 145 DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 146 bits (369), Expect = 8e-40
Identities = 39/211 (18%), Positives = 71/211 (33%), Gaps = 15/211 (7%)
Query: 70 LSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR 129
+++ S + G P L +++T + + W PP +T Y V
Sbjct: 1 MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPPNVQ----LTGYRVRVT 56
Query: 130 DISMPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYD 188
+ I+ ++ +V GL +Y V A+ + P +G+ + +
Sbjct: 57 PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGV-----VTTLE 111
Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
SPP VT + +SW + I G+ +D + + S
Sbjct: 112 NVSPPRRARVTDATETTITISWRTKTET----ITGFQVDAVPANGQTPIQRTIKPDVRS- 166
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
I L G Y+ +Y N+ S P
Sbjct: 167 YTITGLQPGTDYKIYLYTLNDNARSSPVVID 197
Score = 131 bits (332), Expect = 1e-34
Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 19/217 (8%)
Query: 66 YTVNLS--NSSG-SVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT 122
Y V++ + S + PP V++ T+ T T+ W +T
Sbjct: 87 YEVSVYALKDTLTSRPAQGVVTTLENVSPP-RRARVTDATETTITISWRTKTET----IT 141
Query: 123 HYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
+ V+ + I + ++ + GL G +Y ++ +N+N P+
Sbjct: 142 GFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVI----- 196
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
P + + +SW P +RI GY I + GS + V
Sbjct: 197 --DASTAIDAPSNLRFLATTPNSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPRP 250
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
++ I L G +Y V A S P
Sbjct: 251 RPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGR 287
Score = 87.5 bits (217), Expect = 2e-19
Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 6/112 (5%)
Query: 460 RVVAENDLGM-DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
V A D A + + PP+ V D ++ + WR IT + V
Sbjct: 90 SVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTK----TETITGFQV 145
Query: 519 EKREHPMSSWIRVG-NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+ + I+ + ITGL PG Y+ +Y N RS P
Sbjct: 146 DAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVID 197
Score = 86.0 bits (213), Expect = 9e-19
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 7/113 (6%)
Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
+ ND S+ V I S D P +SL + W+ P + IT YI+
Sbjct: 180 IYLYTLNDNA-RSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPP----RARITGYII 234
Query: 519 EKREHPMSSW--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+ + + T ITGL PG +Y V A +S+P
Sbjct: 235 KYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGR 287
Score = 84.5 bits (209), Expect = 3e-18
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 6/115 (5%)
Query: 462 VAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR 521
+A + S + + P + SL+ W P +T Y V
Sbjct: 1 MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVT 56
Query: 522 EHPMSSWIRVGN--TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ ++ N +++ ++GL +YE VYA S P+
Sbjct: 57 PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLE 111
Score = 72.5 bits (178), Expect = 3e-14
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 65 DYTVNLS--NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT 122
DY + L N + S I+ + P L T ++ + W PP+ ++T
Sbjct: 177 DYKIYLYTLNDNA-RSSPVVIDASTAIDAP-SNLRFLATTPNSLLVSWQPPRA----RIT 230
Query: 123 HYVVERRDISMPHW-ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEG 177
Y+++ P + T + GL G EY +V+A+ N PL G
Sbjct: 231 GYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIG 286
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 148 bits (374), Expect = 2e-39
Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 9/215 (4%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
A+N A + A + P + + N AI+ +A +C ++G P P+ +
Sbjct: 196 ARNPASTRTGNEAEVRILSD-PGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT 254
Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
WL+G I ++ + G L+I++V D+ Y C K S AEL ++
Sbjct: 255 WLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP 312
Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
P F P Y + ++ + +G P P + W ++ +V+ +F +
Sbjct: 313 PWFLNHPS---NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN--- 366
Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
L I D Y+ VAEN+ G + ++ +
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 125 bits (316), Expect = 1e-31
Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 6/197 (3%)
Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 349
A + + A +C + G P PTI W K +++ P +
Sbjct: 119 AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA 178
Query: 350 LIINSVYGVDADEYVCRAVNKGGVK-STKAELIIMTAPKFNVPPRFR---DTAYFDKGEN 405
L I+ + D+ Y C A N + +AE+ I++ P + F +G++
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238
Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
V++ +GYP P TW R EVI+ + + L I + ++ D+ Y V
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTY 296
Query: 466 DLGMDSAIVKIQISDRP 482
SA ++ + P
Sbjct: 297 KNENISASAELTVLVPP 313
Score = 110 bits (277), Expect = 2e-26
Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 21/234 (8%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPTI 324
+E S + + + +A ++ N C+ P I
Sbjct: 3 WGSELE---SSHHHHHHGGRRS-----LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVI 54
Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGV-----DADEYVCRAVNK--GGVKSTK 377
W K + + +L+I ++ D Y C A G + S
Sbjct: 55 KWKKDGLILALGMDDRKQQLPNG-SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRT 113
Query: 378 AELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 437
A++++ +F + G+ V++K G P P I W ++ + +
Sbjct: 114 AKVMVAGPLRFLSQTE---SITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSR 170
Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFPTV 490
L I D+ YR A N +++I P +
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYF 224
Score = 109 bits (274), Expect = 6e-26
Identities = 67/417 (16%), Positives = 124/417 (29%), Gaps = 81/417 (19%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDD---YII-IFIK 56
P+ G N + D+ + + K+G ++ + L + I I
Sbjct: 28 PSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHS 87
Query: 57 EIRKEDAGDYTVNLSNSSGS--VSGTFTINITGLPGPPIGPLDVSEITKHTCTLH----- 109
K D G Y S +S T + + G ++ T L
Sbjct: 88 RHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIG 147
Query: 110 -------WNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFH 162
W + + R + +P + L G ++
Sbjct: 148 DPMPTIHW----QKNQQDLNPIPGDSRVVVLP----------SGALQISRLQPGDSGVYR 193
Query: 163 VMAVNENG-----------MGPPLEGINPIKAKSPYDKPSPPGIPVVTQ--VGGD-FVNL 208
A N + P + P + + G V + V G +
Sbjct: 194 CSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF 253
Query: 209 SWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIE---GRQYEFRVY 265
+W + + +++ + + I N+ + G Y
Sbjct: 254 TWLR--GEEVIQLRSKKYSLLGGSN---------------LLISNVTDDDSGT-YT--CV 293
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
+ SAS + + P P + N A ++ + +F+C ++G P PT++
Sbjct: 294 VTYKNENI---SASAELTVLVP-----PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVN 345
Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
W+K + PS I L I V D Y C A N+ G + A+LI+
Sbjct: 346 WMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 52.1 bits (125), Expect = 3e-07
Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 13/136 (9%)
Query: 366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYR 424
R ++ + F P A +G NV++ + P I W +
Sbjct: 2 RWGSELESSHHHHHHGGRRSLHFVSEPS---DAVTMRGGNVLLNCSAESDRGVPVIKWKK 58
Query: 425 DNEVIESGGHFHVETSERHAI----LTIRDASNVDTAPYRVVAENDLG--MDSAIVKIQI 478
D ++ G + ++ + D Y+ A + S K+ +
Sbjct: 59 DGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118
Query: 479 SDRPD---PPQFPTVE 491
+ + T
Sbjct: 119 AGPLRFLSQTESITAF 134
Score = 42.1 bits (99), Expect = 4e-04
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P+ LY E + + + +G V+ KNG VV D F+ ++ + I + K
Sbjct: 319 PSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQ--IVGGSNLR-ILGVVKS 375
Query: 62 DAGDYTVNLSNSSGSVSGTFTINIT 86
D G Y N +G+ + + +
Sbjct: 376 DEGFYQCVAENEAGNAQSSAQLIVP 400
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 142 bits (359), Expect = 3e-39
Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 8/195 (4%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW--ICISTTCH 144
+P P +HW D + HY ++ P +
Sbjct: 4 DVPNAPKLT--GITCQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPN 60
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGD 204
+ V ++ Y F V+A N+ G PP + + P P V +
Sbjct: 61 TDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ-PDVPFKNPDNVVGQGTEPN 119
Query: 205 FVNLSWDK-PLDDGGSRIQGYWID-KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEF 262
+ +SW P + + Y++ K ++ + AW+ N+ + I I + +Y
Sbjct: 120 NLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLI 179
Query: 263 RVYAQNEAGLSLPSS 277
+V A N+ G S ++
Sbjct: 180 KVVAINDRGESNVAA 194
Score = 95.2 bits (237), Expect = 1e-22
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKRE-HPMSSWIRVGNT--RF 536
D P+ P+ + D + W D S I +Y ++ +SW
Sbjct: 4 DVPNAPKLTGIT-CQADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSG 581
+ + +SP Y FRV A N G S PS SD TT ++
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFK 106
Score = 91.7 bits (228), Expect = 2e-21
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGS-DAWQRVNVAICAP 246
D P+ P + +T D + W++ D S I Y I + + +W +
Sbjct: 4 DVPNAPKLTGIT-CQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV 297
+ + Y FRV A N+ G S PS+ S+S + + K P+ +V
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVV 112
Score = 80.5 bits (199), Expect = 2e-17
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 9/124 (7%)
Query: 460 RVVAENDLGM-----DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRA-PIWDGGSNI 513
RV+A N +G S Q P + ++L + W P + +
Sbjct: 78 RVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPN 137
Query: 514 TNYIVE-KREHPMSSWIR--VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
+Y V KR+ P ++W + + R + I +Y +V A N G S+ +
Sbjct: 138 FHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEV 197
Query: 571 LITT 574
+ +
Sbjct: 198 VGYS 201
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 149 bits (378), Expect = 7e-39
Identities = 40/100 (40%), Positives = 58/100 (58%)
Query: 475 KIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT 534
+ P+PP+FP +E+I +++ L W+ P DGGS +TNY +EKRE SW +
Sbjct: 3 MVADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS 62
Query: 535 RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
R+T I GL G QYEFR+ AEN +G+S P + +
Sbjct: 63 RYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLI 102
Score = 101 bits (254), Expect = 7e-23
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
+P PP P++ + + V LSW P DGGS + Y I+K E +W A +
Sbjct: 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSP--CAKSRYT 65
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPE 294
I L G+QYEFR+ A+N+ G S P + V I +
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRG 112
Score = 94.9 bits (236), Expect = 1e-20
Identities = 28/110 (25%), Positives = 40/110 (36%)
Query: 273 SLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE 332
+ + P IV + +A F C + P ++W K RE
Sbjct: 463 KHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE 522
Query: 333 ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+ S ++ G+ Y L IN V G D EY RA N G K L +
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 94.9 bits (236), Expect = 1e-20
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 82 TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST 141
+ P PP P+ + I L W PP DGG VT+Y +E+R+ W +
Sbjct: 3 MVADVPEPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK 61
Query: 142 TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
+ + T ++GL G++Y F ++A N++G P E P+ K
Sbjct: 62 SRY-TYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRR 111
Score = 67.6 bits (165), Expect = 5e-12
Identities = 16/77 (20%), Positives = 30/77 (38%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
G++ P +TW++D+ ++ + + LTI D Y V
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 556
Query: 463 AENDLGMDSAIVKIQIS 479
A+N G IV + ++
Sbjct: 557 AKNSYGTKEEIVFLNVT 573
Score = 55.2 bits (133), Expect = 4e-08
Identities = 17/80 (21%), Positives = 34/80 (42%)
Query: 7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 66
+ EG + P V+ K+ R ++ ++ + + I ++ +D G+Y
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 553
Query: 67 TVNLSNSSGSVSGTFTINIT 86
TV NS G+ +N+T
Sbjct: 554 TVRAKNSYGTKEEIVFLNVT 573
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 151 bits (381), Expect = 9e-39
Identities = 79/602 (13%), Positives = 144/602 (23%), Gaps = 99/602 (16%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF---IKEI 58
+ + G + G L G V+ + V I +
Sbjct: 171 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNT 230
Query: 59 RKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGG 118
K DAG Y + G + + P PI P ++ + + N +G
Sbjct: 231 TKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGD 290
Query: 119 LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
+ VE S W T++ + L EY V+ G G
Sbjct: 291 GPIVAREVEYCTASGS-WNDRQPV-DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPG- 347
Query: 179 NPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ-----GYWIDKHEVG 232
++ ++ P P V +V + + W+ + Y
Sbjct: 348 PALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQE 407
Query: 233 SDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLS------------LPSSASN 280
+ + Q I NL ++ N G LP +
Sbjct: 408 QVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPT 467
Query: 281 SVQIKDPMAAKAPEIIV----PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS 336
+I + P + I + ++ + P+ +S G +
Sbjct: 468 ESIQGST---FEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGN 524
Query: 337 ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF-NVPPRFR 395
H +F L + Y + RA G A T ++P
Sbjct: 525 ETHFLFFG-----LYPGTTYSF----TI-RASTAKGF-GPPATNQFTTKISAPSMPAYEL 573
Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 455
+T V V + ++ Y+ + E T + +
Sbjct: 574 ETPLNQTDNTVTVMLKPAHSRGAPVSVYQ------------IVVEEERPRRTKKTTEILK 621
Query: 456 TAPYRVVAENDLGMDSA---IVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSN 512
P + +N ++S + F T+ D
Sbjct: 622 CYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPF-TIGD-------------------- 660
Query: 513 ITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLI 572
N + T L P Y A + +
Sbjct: 661 --------------------NKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVA 700
Query: 573 TT 574
T
Sbjct: 701 TK 702
Score = 124 bits (313), Expect = 4e-30
Identities = 39/269 (14%), Positives = 71/269 (26%), Gaps = 17/269 (6%)
Query: 314 CTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV 373
+ P W R L I++ + +
Sbjct: 98 VKVNNGPLGNPIWNISGDPTRTWNRAE---------LAISTFWPNFYQVIFEVITSGHQG 148
Query: 374 KSTKAELIIMTAPKFNVPPRFR-DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG 432
E+ ++ P P R + G+ + G + +
Sbjct: 149 YLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA 208
Query: 433 GHFHVETSERH---AILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFP 488
++ + A + + + D YR + + G+ S ++ + + P P P
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP 268
Query: 489 TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGH 548
+ +G L + A +G I VE SW T+ I L P
Sbjct: 269 QLASVGATYLWIQLNANSINGDGPIVAREVEYCTAS-GSWNDRQPVDSTSYKIGHLDPDT 327
Query: 549 QYEFRVYAENV--YGRSDPSTTSDLITTY 575
+YE V G P T
Sbjct: 328 EYEISVLLTRPGEGGTGSPGPALRTRTKC 356
Score = 100 bits (249), Expect = 3e-22
Identities = 78/616 (12%), Positives = 160/616 (25%), Gaps = 89/616 (14%)
Query: 15 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV----LDDYIIIFIKEIRKEDAGDYTVNL 70
V + +G ++ +R + + + Y +IF + I G ++
Sbjct: 96 VYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIF-EVITSGHQGYLAIDE 154
Query: 71 SNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRD 130
V G ++ + C+ D V +
Sbjct: 155 VK----VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL 210
Query: 131 ISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKP 190
+ S+ +F V T+ + M E G+G + P
Sbjct: 211 KEIKV---TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS-----NYAELVVKEPP 262
Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
P P + VG ++ + + +G I + ++ S +W +
Sbjct: 263 VPIAPPQLASVGATYLWIQLNANSINGDGPIVAREV-EYCTASGSWNDRQPVD--STSYK 319
Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA--KAP-----------EIIV 297
I +L +YE V S +++ + A + P +I +
Sbjct: 320 IGHLDPDTEYEISVLLTRPGEGG-TGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITI 378
Query: 298 ----PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
N ++N + + S + S H YT
Sbjct: 379 RWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEV-SWDTENSHPQHTITNLSPYTN--- 434
Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK---- 409
+N G K ++ ELI+ T E + ++
Sbjct: 435 --V-----SVKLILMNPEGRKESQ-ELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREP 486
Query: 410 ----IPFTGYPKPKITWYRDN------EVIESGGHFHVETSERHAILTIRDASNVDTAPY 459
T Y +IT+ + ++ G +E H + P
Sbjct: 487 TQTYGVITLY---EITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFF-------GLYPG 536
Query: 460 -----RVVAENDLGM-DSAIVKIQ-ISDRPDPPQFP--TVEDIGHDSLALVWRAPIWDGG 510
+ A G A + P P + T + +++ ++ + G
Sbjct: 537 TTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAH-SRG 595
Query: 511 SNITNYIVEKREHPMSSWIRV-----GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP 565
+ ++ Y + E + L Y + + + P
Sbjct: 596 APVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQP 655
Query: 566 STTSDLITTYGELLSG 581
T D T G +
Sbjct: 656 FTIGDNKTYNGYWNTP 671
Score = 47.5 bits (112), Expect = 1e-05
Identities = 20/179 (11%), Positives = 42/179 (23%), Gaps = 17/179 (9%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
+ V + P W + + A L I V
Sbjct: 91 PGLLNVYVKVNNGPLGNPIWNISGDPTR---------TWNRAELAISTFWPNFYQVIFEV 141
Query: 463 AENDLGMDSAIVKIQISDRPDP-----PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYI 517
+ AI ++++ P + VE A +
Sbjct: 142 ITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201
Query: 518 VEKREHPMSSWIRVGNTRFTTMA--ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
I+V ++R + + + ++R G S ++L+
Sbjct: 202 GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV-GISNYAELVVK 259
Score = 45.9 bits (108), Expect = 3e-05
Identities = 16/156 (10%), Positives = 31/156 (19%), Gaps = 44/156 (28%)
Query: 89 PGPPIGPLDVSE-ITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTT 147
P P L+ T +T T+ P G V+ Y + + +
Sbjct: 566 PSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVSVYQIVVEEERPRRTKKTTEILKCYP 624
Query: 148 ------------------------------------------FIVQGLTEGQEYLFHVMA 165
+ L + Y + A
Sbjct: 625 VPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQA 684
Query: 166 VNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQV 201
+ ++ + + KP P
Sbjct: 685 ASRANGETKIDCVQVATKGAATPKPVPEPEKQTDHT 720
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 138 bits (350), Expect = 3e-38
Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 5/188 (2%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
++ + L + F CT G P+ + +I + R + EG L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 352 INSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI 410
I + DA Y C+A + G + L I F F +GE+ V
Sbjct: 62 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVS---PQEFKQGEDAEVVC 118
Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD 470
+ P P ++W NE + + + L I + + D YR + +
Sbjct: 119 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-LQILNINKSDEGIYRCEGRVEARGE 177
Query: 471 SAIVKIQI 478
I +
Sbjct: 178 IDFRDIIV 185
Score = 45.5 bits (108), Expect = 9e-06
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+ +G++ +V + VS + V + +F +L + + I I K
Sbjct: 103 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ-ILNINKS 161
Query: 62 DAGDYTVNLSNSSGSVSGTFTINIT 86
D G Y + I +
Sbjct: 162 DEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 42.1 bits (99), Expect = 1e-04
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+ + + G++ G+ G + S R + I E
Sbjct: 9 LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 68
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPI 93
DAG Y +++ G T+ +
Sbjct: 69 DAGIYRCQATDAKGQTQ-EATVVLEIYQKLTF 99
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 141 bits (358), Expect = 3e-38
Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 17/225 (7%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
A + G + A+ ++I + Q +A+ C ++ P P +S
Sbjct: 79 ATDAKGQT--QEATVVLEIYQK-----LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 131
Query: 326 WLKGSREI--TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK--GGVKSTKAELI 381
WL + E+ R + A L I ++ D Y C + G + +I
Sbjct: 132 WLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188
Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
+ P ++P + + ++GE + +G P+P I+W+R+ ++IE + ++ S
Sbjct: 189 VNVPPAISMPQKSFNA-TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 247
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
LT+R+ N D PY A N G D +Q+ +
Sbjct: 248 TE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHH 290
Score = 126 bits (319), Expect = 7e-33
Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 7/205 (3%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
++ + L + F CT G P+ + +I + R + EG L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 352 INSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI 410
I + DA Y C+A + G + L I F F +GE+ V
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVS---PQEFKQGEDAEVVC 120
Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG-- 468
+ P P ++W NE + + + L I + + D YR +
Sbjct: 121 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-LQILNINKSDEGIYRCEGRVEARGE 179
Query: 469 MDSAIVKIQISDRPDPPQFPTVEDI 493
+D + + ++ P +
Sbjct: 180 IDFRDIIVIVNVPPAISMPQKSFNA 204
Score = 46.3 bits (110), Expect = 1e-05
Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
G +S +NG++++ ++++ + + ++ I D G Y +N +G
Sbjct: 220 GSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 277
Query: 81 FTINITGLP 89
+ +
Sbjct: 278 AFLQVFVQH 286
Score = 42.1 bits (99), Expect = 3e-04
Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 1/109 (0%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+ + + G++ G+ G + S R + I E
Sbjct: 11 LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 70
Query: 62 DAGDYTVNLSNSSGSV-SGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
DAG Y +++ G T + I +
Sbjct: 71 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 119
Score = 39.4 bits (92), Expect = 0.002
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 2/102 (1%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+ +G++ +V + VS + V + +F +L + + I I K
Sbjct: 105 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ-ILNINKS 163
Query: 62 DAGDYTVNLSNSS-GSVSGTFTINITGLPGPPIGPLDVSEIT 102
D G Y + G + I I +P P T
Sbjct: 164 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 205
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 137 bits (346), Expect = 1e-37
Identities = 54/185 (29%), Positives = 72/185 (38%), Gaps = 10/185 (5%)
Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIFAEGDTY 348
KAP I PL +A+ A F C + P+P ISW + I R+ I G
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ-- 62
Query: 349 TLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
L I SV D Y C A N GG + L + PK PP +G V
Sbjct: 63 LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII---EGLKAV 119
Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDL 467
+ G PKP ++W + + + V S L I + D YR VA+N L
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSL 176
Query: 468 GMDSA 472
G +
Sbjct: 177 GTAYS 181
Score = 96.3 bits (240), Expect = 4e-23
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
A N G ++ S + V++K P+I P N I+ A CT G PKP++S
Sbjct: 81 ANNGVGGAVESCGALQVKMK-------PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVS 133
Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIM 383
W+KG + ++R + G +L I++V DA +Y C A N G S +L +
Sbjct: 134 WIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 41.3 bits (97), Expect = 3e-04
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 30 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG-SVSGTFTINITGL 88
T+N +++ D ++++ ++ ++ I + D G Y +N G +V + +
Sbjct: 42 TRNKILIKLFDT-RYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK 100
Query: 89 PGPPIGPLDVSEITKHTCTLH 109
P P++V I L
Sbjct: 101 PKITRPPINVKIIEGLKAVLP 121
Score = 37.8 bits (88), Expect = 0.004
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
VS K ++ + R VL+ + I ++KEDAG Y NS G+
Sbjct: 131 SVSWIKGDSALRENSRI--AVLESGSLR-IHNVQKEDAGQYRCVAKNSLGTAY 180
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 136 bits (345), Expect = 1e-37
Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 6/189 (3%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
+ Q +A+ C ++ P P +SWL + E+T + + + L
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQ 60
Query: 352 INSVYGVDADEYVCRAVNKGG--VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 409
I ++ D Y C + + +I+ P ++P + + ++GE +
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA-TAERGEEMTFS 119
Query: 410 IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
+G P+P I+W+R+ ++IE + ++ S LT+R+ N D PY A N G
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGE 177
Query: 470 DSAIVKIQI 478
D +Q+
Sbjct: 178 DEKQAFLQV 186
Score = 88.7 bits (220), Expect = 2e-20
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP--LRNANAIQNHNAQFQCTITGCPKPT 323
+ EA + + P I +P NA A + F C +G P+P
Sbjct: 76 GRVEARGEIDFRDIIVI------VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 129
Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
ISW + + I + ++ + +G L + ++ D YVCRA NK G +A L +
Sbjct: 130 ISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 44.8 bits (106), Expect = 2e-05
Identities = 8/56 (14%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 30 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
+NG++++ ++++ + + ++ I D G Y +N +G + +
Sbjct: 133 FRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 38.6 bits (90), Expect = 0.002
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
VS + V + +F +L + + I I K D G Y + I +
Sbjct: 33 AVSWLYHNEEVTTISDNRFAMLANNNLQ-ILNINKSDEGIYRCEGRVEARGEIDFRDIIV 91
Query: 86 TGLPGPPI----GPLDVSEITKHTCTLH 109
P I + + T
Sbjct: 92 IVNVPPAISMPQKSFNATAERGEEMTFS 119
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 140 bits (354), Expect = 2e-37
Identities = 38/247 (15%), Positives = 81/247 (32%), Gaps = 37/247 (14%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC- 319
+ V +++ G + + + E+++ + A+ + + Q T G
Sbjct: 75 IYEVILKDDRGKD---KSRLKLVDEAF-----KELMMEVCKKIALSATDLKIQSTAEGIQ 126
Query: 320 ---------PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370
++W I S R G+ L IN D +YV +
Sbjct: 127 LYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDG 186
Query: 371 GGVKSTKAELII---------------MTAPKFNVPPRFR---DTAYFDKGENVVVKIPF 412
+L + N D +G+ + +
Sbjct: 187 KTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246
Query: 413 TGYPKPKITWYRDNEVIESGGHFHV-ETSERHAILTIRDASNVDTAPYRVVAENDLGMDS 471
G P P+++W ++ + + S H ++ + R A TI S D+ Y +V +N G ++
Sbjct: 247 WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSET 306
Query: 472 AIVKIQI 478
+ + +
Sbjct: 307 SDFTVSV 313
Score = 133 bits (335), Expect = 8e-35
Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 13/224 (5%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPK-PTISWLKGSREITPSARHHIFAEGDTYT 349
P + L N +C + K I W K REI+ +H + T
Sbjct: 6 TGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICT 62
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR-----FRDTAYFDKGE 404
L+I DA Y + G ++ +L+ + +
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122
Query: 405 NVVVKIPF--TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
+ F K+ W + I + L I + + D Y +
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 182
Query: 463 AENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPI 506
+ V + + + + + ++A RA +
Sbjct: 183 LFDGKTGHQKTVDLSGQAYDEA--YAEFQRLKQAAIAEKNRARV 224
Score = 64.2 bits (156), Expect = 2e-11
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 4/115 (3%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
+ ++V+ + NG ++ DR K V + I + I E D G Y + L +
Sbjct: 133 YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK 192
Query: 80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP 134
T ++ + K N + GGL + E + +++
Sbjct: 193 TVDLSGQAYDEAYAEFQRL----KQAAIAEKNRARVLGGLPDVVTIQEGKALNLT 243
Score = 59.2 bits (143), Expect = 1e-09
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV-LDDYIIIFIKEIR 59
+P+ + I EG + GD P EVS KN + + SDD I +
Sbjct: 228 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVS 287
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINI 85
D+G Y + + N GS + FT+++
Sbjct: 288 TADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 56.1 bits (135), Expect = 1e-08
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Query: 7 IPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGD 65
+ N +K A + + K+ R + D++ F D + I E K+DAG
Sbjct: 18 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGI 75
Query: 66 YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
Y V L + G + + ++ +
Sbjct: 76 YEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 134 bits (340), Expect = 1e-36
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)
Query: 310 AQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368
Q +T ++W I S R G+ L IN D +YV
Sbjct: 20 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79
Query: 369 NKGGVKSTKAELII---------------MTAPKFNVPPRFR---DTAYFDKGENVVVKI 410
+ +L + N D +G+ + +
Sbjct: 80 DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC 139
Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSE-RHAILTIRDASNVDTAPYRVVAENDLGM 469
G P P+++W ++ + + H +++ R A TI S D+ Y +V +N G
Sbjct: 140 NVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 199
Query: 470 DSAIVKIQI 478
+++ + +
Sbjct: 200 ETSDFTVSV 208
Score = 87.2 bits (216), Expect = 8e-20
Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 1/115 (0%)
Query: 269 EAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK 328
+A + Q +A + + C + G P P +SWLK
Sbjct: 94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 153
Query: 329 GSREITPSARHHI-FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+ + + ++ F G T IN V D+ +Y NK G +++ + +
Sbjct: 154 NEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 64.9 bits (158), Expect = 3e-12
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 4/115 (3%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
+ ++V+ + NG ++ DR K V + I + I E D G Y + L +
Sbjct: 28 YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK 87
Query: 80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP 134
T ++ + + N + GGL + E + +++
Sbjct: 88 TVDLSGQAYDEAYAEFQRLKQAA----IAEKNRARVLGGLPDVVTIQEGKALNLT 138
Score = 62.2 bits (151), Expect = 3e-11
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Query: 413 TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA 472
K+ W + I + L I + + D Y + +
Sbjct: 28 YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKT--GH 85
Query: 473 IVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIW 507
+ +S + + + + ++A RA +
Sbjct: 86 QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 120
Score = 61.8 bits (150), Expect = 5e-11
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-IKEIR 59
+P+ + I EG + GD P EVS KN + + D F I +
Sbjct: 123 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVS 182
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINI 85
D+G Y + + N GS + FT+++
Sbjct: 183 TADSGKYGLVVKNKYGSETSDFTVSV 208
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 137 bits (347), Expect = 8e-36
Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 13/225 (5%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIK---DPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT 317
++ A+N A ++ + P ++ A C
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYG 237
Query: 318 GCPKPTISWLKGSREI--TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVK 374
P ++ K +++ P R L+ + D Y C N G +
Sbjct: 238 SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 297
Query: 375 STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH 434
+L +++APK+ P +G++V + TG P P + W + + + SGG
Sbjct: 298 KHSLKLTVVSAPKYEQKP--EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGR 354
Query: 435 FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
V S L I+ N D Y A N+ G +Q++
Sbjct: 355 ATVTDSG----LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
Score = 105 bits (264), Expect = 9e-25
Identities = 30/211 (14%), Positives = 54/211 (25%), Gaps = 17/211 (8%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYT 349
K P + +N+ +C I G + SW K + + + + +
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG-S 63
Query: 350 LIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
L+ D Y C A G S +G +
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTH---EKTPIEGRPFQL 120
Query: 409 K-IPFTGYPKPKITWYRDN-------EVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
+ YPKP ITW + +V + + D Y
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180
Query: 461 VVAENDLGMD---SAIVKIQISDRPDPPQFP 488
A+N + +I+ + +
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211
Score = 105 bits (263), Expect = 1e-24
Identities = 37/243 (15%), Positives = 70/243 (28%), Gaps = 33/243 (13%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-TGCPKPTI 324
A+ AG ++S + + I+ Q C + PKP I
Sbjct: 81 AETPAG----VASSRVISFR---KTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLI 133
Query: 325 SWLKGSREITPSA-------RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKST 376
+W K P+A R +G+ Y I+ D +YVC A N +
Sbjct: 134 TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV 193
Query: 377 KAELIIM----TAPKFNVPPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 429
E I + P + G+ ++ + P ++++ + +
Sbjct: 194 LVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDV 253
Query: 430 E--SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD---SAIVKIQISDRPDP 484
L + D Y +N +G S + +
Sbjct: 254 NGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-----A 308
Query: 485 PQF 487
P++
Sbjct: 309 PKY 311
Score = 99.2 bits (247), Expect = 1e-22
Identities = 58/386 (15%), Positives = 106/386 (27%), Gaps = 52/386 (13%)
Query: 23 QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTF 81
Q ++ S K+G+ + D+ ++ + D G Y +G S
Sbjct: 35 QGVKYSWKKDGKSYNWQEHNAALRKDEGSLV-FLRPQASDEGHYQCFAETPAGVASSRVI 93
Query: 82 TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT------HYVVERRDISMPH 135
+ T L P + + I L P +T
Sbjct: 94 SFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153
Query: 136 WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM----GPPLEGINPIKAKSP-YDKP 190
I + IV Y + A N E K S +P
Sbjct: 154 RITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEP 213
Query: 191 SPPGIP--VVTQVGGDFV-----------NLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQ 237
P + ++ + G + ++ K G + G D+ +
Sbjct: 214 VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK----NGKDVNGNPEDRITRHNRTSG 269
Query: 238 RVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV 297
+ + + + + N G P S + + P+
Sbjct: 270 KR---------LLFKTTLPEDEGVYTCEVDNGVG--KPQKHSLKLTVVSA-----PKYEQ 313
Query: 298 -PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY 356
P + Q + C +TG P P + W ++ + R + L+I V
Sbjct: 314 KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATV----TDSGLVIKGVK 368
Query: 357 GVDADEYVCRAVNKGGVKSTKAELII 382
D Y CRA N+ G K + + +
Sbjct: 369 NGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 44.5 bits (105), Expect = 7e-05
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 3/100 (3%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD--DRFKFTVLDDYIIIFIKEIR 59
+ GD T + Y + + KNG+ V + DR + K
Sbjct: 219 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL 278
Query: 60 KEDAGDYTVNLSNSSGSV-SGTFTINITGLPGPPIGPLDV 98
ED G YT + N G + + + P P V
Sbjct: 279 PEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKV 318
Score = 40.3 bits (94), Expect = 0.001
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+ + +G + + G V + N + + + TV D ++I K ++
Sbjct: 316 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG---RATVTDSGLVI--KGVKNG 370
Query: 62 DAGDYTVNLSNSSGSVSGTFTINI 85
D G Y +N G + +
Sbjct: 371 DKGYYGCRATNEHGDKYFETLVQV 394
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 127 bits (322), Expect = 3e-35
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 468 GMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS 527
G A + IQI DRP PPQ +ED+ +++AL W P DG + IT Y ++K +
Sbjct: 4 GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63
Query: 528 WIRVG-NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
W V + T+ IT L G++Y FRV++EN+ G S+ +T +
Sbjct: 64 WFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAV 111
Score = 124 bits (314), Expect = 4e-34
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
SSGS + I I PGPP + + ++ L W PPK DG +T Y +++ D
Sbjct: 2 SSGSSGASIDIQIIDRPGPP-QIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKK 60
Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKP 190
W + H T+ + L G EY F V + N G+ + K
Sbjct: 61 SMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKI 118
Score = 108 bits (273), Expect = 2e-28
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
D+P PP I + V G+ V L+W P DDG + I GY I K + S W V S
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS 75
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI 295
I L+ G +Y FRV+++N GLS ++ + + A+ +I
Sbjct: 76 -ATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVI----ARDGKI 118
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 136 bits (343), Expect = 2e-34
Identities = 50/323 (15%), Positives = 100/323 (30%), Gaps = 35/323 (10%)
Query: 266 AQNEAGLSLPSSASNSVQIK-DPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT- 323
E S S +K P P + V + + CTI
Sbjct: 188 VDQEGK----SVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243
Query: 324 ISWLKGSREITPSARHHIFAEGDT-----YTLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
+W + + + +++ + GD TL I+S D+ ++C A N G +
Sbjct: 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT 303
Query: 379 ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK-ITWYRDNEVIESGGHFHV 437
L ++ N+ P T + + GENV + + + +PKP+ W N +
Sbjct: 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYP 363
Query: 438 ETSERHAI-----LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
++ I L + + Y + N + + ++ P+ T +
Sbjct: 364 KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---TKPEILTYDR 420
Query: 493 ----------IGHDSLALVWRAPIWDGGSNITNY--IVEKREHPMSSWIRVGNTRFTTMA 540
G + W + G+ ++ ++S +
Sbjct: 421 LVNGMLQCVAAGFPEPTIDWY---FCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSS 477
Query: 541 ITGLSPGHQYEFRVYAENVYGRS 563
I + H A N G++
Sbjct: 478 IDSSAFKHNGTVECKAYNDVGKT 500
Score = 121 bits (304), Expect = 2e-29
Identities = 63/498 (12%), Positives = 127/498 (25%), Gaps = 77/498 (15%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
V T ++++ ++ + G YT + + + + +
Sbjct: 63 FVKWTFEILDETNENKQN--------EWITEKAEATNTGKYTCTNKHGLSN---SIYVFV 111
Query: 86 TGLPGPPIGPLDVSEITKHT----CTLHWNPP-----KYDGGLKVTHYVVERRDISMPHW 136
+ + + C L K G + + D
Sbjct: 112 RDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIM 171
Query: 137 IC-ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGI 195
I + H EG+ L + P P+ + S G
Sbjct: 172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKV----RPAFKAVPVVSVSKASYLLREGE 227
Query: 196 PVV---TQVGGDF-VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
T V +W + S+ K + ++W + + + I
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKRE----NSQT------KLQEKYNSWHHGDFNYERQATLTI 277
Query: 252 PNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP---LRNANAIQNH 308
+ F YA N G ++ + ++++ D I +
Sbjct: 278 SSARVNDSGVFMCYANNTFG---SANVTTTLEVVDK-----GFINIFPMINTTVFVNDGE 329
Query: 309 NAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGD-----TYTLIINSVYGVDADE 362
N PKP W+ +R T + +E + L + + G +
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389
Query: 363 YVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITW 422
Y N + + + N P D+ N +++ G+P+P I W
Sbjct: 390 YTFLVSNSDVNAAIAFNVYV------NTKPEILTY---DRLVNGMLQCVAAGFPEPTIDW 440
Query: 423 YRDNEVIESGGHFHVETSERHAI------------LTIRDASNVDTAPYRVVAENDLGMD 470
Y + + + +I ++ A ND+G
Sbjct: 441 YFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT 500
Query: 471 SAIVKIQISDRPDPPQFP 488
SA P
Sbjct: 501 SAYFNFAFKGNNKEQIHP 518
Score = 106 bits (266), Expect = 1e-24
Identities = 49/322 (15%), Positives = 95/322 (29%), Gaps = 41/322 (12%)
Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTI 324
++ S V ++DP ++ + R+ ++++ +C +T P+ T
Sbjct: 98 TNKHGLS------NSIYVFVRDP-----AKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTN 145
Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 384
LKG + + +I + C +G + I+
Sbjct: 146 YSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS-VLSEKFILKV 204
Query: 385 APKFNVPPRFRDTA---YFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVE-- 438
P F P + +GE V TW R+N + ++
Sbjct: 205 RPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH 264
Query: 439 ---TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP----DPPQFPTVE 491
ER A LTI A D+ + A N G + +++ D+ P TV
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324
Query: 492 DIGHDSLALVWRAP--------IW--DGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
+++ L+ W + +K E S + + +
Sbjct: 325 VNDGENVDLIVEYEAFPKPEHQQWIYMNRT-----FTDKWEDYPKSENESNIRYVSELHL 379
Query: 542 TGLSPGHQYEFRVYAENVYGRS 563
T L + N +
Sbjct: 380 TRLKGTEGGTYTFLVSNSDVNA 401
Score = 72.8 bits (178), Expect = 1e-13
Identities = 36/316 (11%), Positives = 82/316 (25%), Gaps = 38/316 (12%)
Query: 264 VYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT 323
+ + + G S+ SV +P P I + + CT G
Sbjct: 16 LLLRVQTG-----SSQPSVSPGEP---SPPSIHPGKSDLIVRVGDEIRLLCTDPG----F 63
Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
+ W + T + + I + +Y C + + +
Sbjct: 64 VKWTFEILDETNENKQN--------EWITEKAEATNTGKYTCTNKHGLS---NSIYVFVR 112
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
K + R + Y + + +V+ P T P+ + + +
Sbjct: 113 DPAKLFLVDR---SLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKA 168
Query: 444 AILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQFPTVED-----IGHDS 497
I+ + + + S +++ +V +
Sbjct: 169 GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEE 228
Query: 498 LALVWRAPIWDGGSNIT-----NYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEF 552
+ T + + ++ R T+ I+ F
Sbjct: 229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVF 288
Query: 553 RVYAENVYGRSDPSTT 568
YA N +G ++ +TT
Sbjct: 289 MCYANNTFGSANVTTT 304
Score = 72.4 bits (177), Expect = 2e-13
Identities = 62/432 (14%), Positives = 110/432 (25%), Gaps = 75/432 (17%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+LY E ++T V+ D + K + +F I+ R
Sbjct: 121 DRSLYGKEDNDTLVRCP-LTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY 179
Query: 62 DAGDYTVNLSNSSGSV-SGTFTINIT-GLPGPPIGPLDVSEITKH-------TCTLHWNP 112
++ SV S F + + P+ + + TCT+
Sbjct: 180 HRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVS 239
Query: 113 P------KYDGG-LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMA 165
K + K+ + + T G + M
Sbjct: 240 SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG-----VF----MC 290
Query: 166 VNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNL-------------SWDK 212
N G + P V G+ V+L W
Sbjct: 291 YANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY 350
Query: 213 PLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGL 272
W D + +++ R S++++ L + N
Sbjct: 351 M----NRTFTDKWEDYPKSENESNIRYV------SELHLTRLKGTEGGTYTFLVSNSDVN 400
Query: 273 SLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--- 329
+ + + +V + PEI+ + N QC G P+PTI W
Sbjct: 401 A---AIAFNVYVNTK-----PEILT------YDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446
Query: 330 ----SREITPSARHHIFAEGDTY-----TLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
S + P + + G + I+S C+A N G S
Sbjct: 447 EQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
Query: 381 IIMTAPKFNVPP 392
K + P
Sbjct: 507 AFKGNNKEQIHP 518
Score = 48.5 bits (115), Expect = 4e-06
Identities = 14/147 (9%), Positives = 32/147 (21%), Gaps = 22/147 (14%)
Query: 359 DADEYVC----RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG 414
A +++C + G + P + G+ +
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGK---SDLIVRVGDEIR----LLC 58
Query: 415 YPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474
+ W + + A +T Y ++ L +
Sbjct: 59 TDPGFVKWTFEI--------LDETNENKQNEWITEKAEATNTGKYTCTNKHGLS---NSI 107
Query: 475 KIQISDRPDPPQFPTVEDIGHDSLALV 501
+ + D D+ LV
Sbjct: 108 YVFVRDPAKLFLVDRSLYGKEDNDTLV 134
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 133 bits (336), Expect = 2e-34
Identities = 44/220 (20%), Positives = 73/220 (33%), Gaps = 13/220 (5%)
Query: 262 FRVYAQNEAG--LSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQFQCTITG 318
+ N L ++ M P+I V A + + +C G
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231
Query: 319 CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
P PTI W + + + G L I + DA Y C A N G K
Sbjct: 232 NPVPTILWRRADGKPIARKARRHKSNG---ILEIPNFQQEDAGSYECVAENSRGKNVAKG 288
Query: 379 ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE 438
+L P + + E+V + G PKP W ++ + + + +E
Sbjct: 289 QLTFYAQPNWVQIIN---DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE 345
Query: 439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
L I + D Y+ VAEN G+ + ++ +
Sbjct: 346 QGT----LNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 106 bits (265), Expect = 5e-25
Identities = 46/236 (19%), Positives = 68/236 (28%), Gaps = 33/236 (13%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQFQCTIT-GCPKPT 323
A N G + S +++ A + + C + +
Sbjct: 82 ATNSFG----TIVSREAKLQ---FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELS 134
Query: 324 ISWLKGSREITP-SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG---VKSTKAE 379
+W+ + R G L I V D Y C N V
Sbjct: 135 YAWIFNEYPSYQDNRRFVSQETG---NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTP 191
Query: 380 LIIMT-------APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN-EVIES 431
LI+ PK V A +KG V ++ G P P I W R + + I
Sbjct: 192 LILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFALGNPVPTILWRRADGKPIAR 249
Query: 432 GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
H IL I + D Y VAEN G + A ++ P +
Sbjct: 250 KARRHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY---AQPNW 298
Score = 102 bits (257), Expect = 6e-24
Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 16/202 (7%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
++ PL + + C + G PKP I W ++ + LI
Sbjct: 13 SHVMFPL----DSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS-LLIN 67
Query: 353 NSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-I 410
N DA Y C A N G + S +A+L F R T +G+ +V+
Sbjct: 68 NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRT--RSTVSVRRGQGMVLLCG 125
Query: 411 PFTGYPKPKITWYRDNE-VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
P + W + + F + + L I D Y V N +
Sbjct: 126 PPPHSGELSYAWIFNEYPSYQDNRRFVSQET---GNLYIAKVEKSDVGNYTCVVTNTVTN 182
Query: 470 D---SAIVKIQISDRPDPPQFP 488
+ + + ++
Sbjct: 183 HKVLGPPTPLILRNDGVMGEYE 204
Score = 96.1 bits (239), Expect = 1e-21
Identities = 78/385 (20%), Positives = 124/385 (32%), Gaps = 58/385 (15%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SG 79
G+ + NG V F+++V+D ++I + +DAG Y +NS G++ S
Sbjct: 34 GNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLI-NNPNKTQDAGTYQCIATNSFGTIVSR 92
Query: 80 TFTINITGLPGPPIGPLDVSEITK-HTCTLHWNPPKYDGGLKVT-------HYVVERRDI 131
+ L + + L PP + G L Y RR +
Sbjct: 93 EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV 152
Query: 132 SMPH---WICIST-------TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
S +I TC T + G + G P I
Sbjct: 153 SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEP-----KI 207
Query: 182 KAKSPYDKPSPPGIPVVTQ--VGGD-FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQR 238
+ + P P+ G V + G+ + W + G I G
Sbjct: 208 EVQFPETVPAEKGTTVKLECFALGNPVPTILWRR---ADGKPIARKARRHKSNGI----- 259
Query: 239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP 298
+ IPN + + A+N G + A + P +
Sbjct: 260 ----------LEIPNFQQEDAGSYECVAENSRG---KNVAKGQLTFYAQ-----PNWVQI 301
Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
+ + + + ++C G PKPT WLK + R I + TL I V
Sbjct: 302 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLS 357
Query: 359 DADEYVCRAVNKGGVKSTKAELIIM 383
DA Y C A NK GV + AEL ++
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELSVI 382
Score = 53.3 bits (128), Expect = 1e-07
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 2/106 (1%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
+ P F P + + V + G PKP I W + ++ G F +
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD-G 62
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFP 488
++L D Y+ +A N G S K+Q + +
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRT 108
Score = 42.1 bits (99), Expect = 4e-04
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
N +++ ++ + G KNG + + DR + + I +
Sbjct: 302 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE--QGTLNI--TIVNLS 357
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITG 87
DAG Y N G + + +++
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELSVIA 383
Score = 41.4 bits (97), Expect = 7e-04
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTK-NGRVVQSDDRFKFTVLDDYIIIFIKEIR 59
P + +G K++ F G+ + + +G+ + R + I+ I +
Sbjct: 211 FPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR---HKSNGILE-IPNFQ 266
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
+EDAG Y NS G + P D+ + +
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWE 316
Score = 33.3 bits (76), Expect = 0.24
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
+ + N D+R +F + + I ++ K D G+YT ++N+ +
Sbjct: 128 PHSGELSYAWIFNEYPSYQDNR-RFVSQETGNLY-IAKVEKSDVGNYTCVVTNTVTNHK 184
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 135 bits (342), Expect = 2e-34
Identities = 56/514 (10%), Positives = 125/514 (24%), Gaps = 82/514 (15%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
A+ + + +++ + + F + + I ++ +
Sbjct: 55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTET 113
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHT---CTLHWNPPKYDGG 118
AG+Y + + + + + + FT++I + ++ C P
Sbjct: 114 QAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPE----- 168
Query: 119 LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
V + + + S ++ L A NE G
Sbjct: 169 PIVEWVLCDSQGESCKEESPAVVK--KEEKVLHELFGTD---IRCCARNELG-----REC 218
Query: 179 NPIKAKSPYDKPSPPGIPVVTQVGGDF------------VNLSWDKPLDDGGSRIQGYWI 226
+ P + +VG L+W+ +
Sbjct: 219 TRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE---------NKAL 269
Query: 227 DKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 286
++ + N + + ++ + + S V I +
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS------QSALVTIVE 323
Query: 287 PMAAKAPEIIVPLRNAN--AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE 344
I + + Q F P+ +W + +
Sbjct: 324 K-----GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD--- 375
Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGE 404
+ Y++ + EY+ A N + L I P+ +
Sbjct: 376 -NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI------RRKPQV-----LAEAS 423
Query: 405 NVVVKIPFTGYPKPKITWYR--------DNEVIESGGHFHVETSERHAI---LTIRDASN 453
GYP P TW + E+ E + T+ +
Sbjct: 424 ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEA 483
Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
+ + A N LG + + P P F
Sbjct: 484 IKGFLVKCCAYNSLGTSCETILLNS---PGPFPF 514
Score = 115 bits (289), Expect = 2e-27
Identities = 36/309 (11%), Positives = 92/309 (29%), Gaps = 21/309 (6%)
Query: 266 AQNEAGLSLPSS----ASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321
N++ + SS + + + + ++ + + + Q +
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGN 77
Query: 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 381
+ W+ + + G +++I + A EY+ ++ + +
Sbjct: 78 ISCLWVFKHSSLNCQPHFDLQNRGVV-SMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
I + + + + P+P + W + ES E S
Sbjct: 137 IRNTLLYTLRRPYFRKM----ENQDALVCISESVPEPIVEWVLCDSQGESCK----EESP 188
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQFPTVEDIGHDSLAL 500
+ + R A N+LG + + I ++ P +G + L +
Sbjct: 189 AVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVG-EPLWI 247
Query: 501 VWRAPIWDGGSNIT----NYIVEKREHPMSSWIRVGNT--RFTTMAITGLSPGHQYEFRV 554
+A + G +T N +E+ + S T R ++ ++ +
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 555 YAENVYGRS 563
+ +S
Sbjct: 308 SSSKHPSQS 316
Score = 50.5 bits (120), Expect = 1e-06
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
I + + + + + + T + + + + LD+ I K
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK----GLDNGYSISKFCNHK 387
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLP 89
G+Y + N + FT+NI P
Sbjct: 388 HQPGEYIFHAENDDAQFTKMFTLNIRRKP 416
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 136 bits (342), Expect = 3e-34
Identities = 40/260 (15%), Positives = 64/260 (24%), Gaps = 18/260 (6%)
Query: 31 KNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPG 90
++ S FKF + + + G + P
Sbjct: 275 EDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPP 334
Query: 91 PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC-----------I 139
L + L W PP+ GG + Y V C
Sbjct: 335 SAPHYL-TAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEP 393
Query: 140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT 199
T+ V L Y F V A N + S + P +
Sbjct: 394 PHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSR---SFRTASVSINQTEPPKVRLE 450
Query: 200 QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQ 259
+++SW P R+ Y + + G NV + + +L
Sbjct: 451 GRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSY--NVRRTEGFSVTLDDLAPDTT 507
Query: 260 YEFRVYAQNEAGLSLPSSAS 279
Y +V A + G S
Sbjct: 508 YLVQVQALTQEGQGAGSKVH 527
Score = 86.0 bits (212), Expect = 8e-18
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 4/118 (3%)
Query: 459 YRVVAENDLGMDSAIVKIQ---ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN 515
+ V A N + + +S P +E SL++ W P +
Sbjct: 415 FTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWK 473
Query: 516 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
Y V R+ S+ V T ++ + L+P Y +V A G+ S + T
Sbjct: 474 YEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 531
Score = 77.9 bits (191), Expect = 3e-15
Identities = 27/164 (16%), Positives = 36/164 (21%), Gaps = 12/164 (7%)
Query: 422 WYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
D S G F E SE + E R
Sbjct: 273 KVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTR 332
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW------------I 529
P + L W P GG Y V + S
Sbjct: 333 PPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 392
Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
T++ ++ L P Y F V A N S + +
Sbjct: 393 PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS 436
Score = 70.6 bits (172), Expect = 5e-13
Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 10/121 (8%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN------- 240
+P + G V L W P D GG Y + + ++ +
Sbjct: 331 TRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRY 390
Query: 241 ---VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV 297
+ + + +L Y F V A+N + S + + + +
Sbjct: 391 SEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLE 450
Query: 298 P 298
Sbjct: 451 G 451
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 128 bits (323), Expect = 4e-34
Identities = 40/232 (17%), Positives = 73/232 (31%), Gaps = 25/232 (10%)
Query: 278 ASNSVQIKDPMAAKAPEIIVPLRNANAIQN----HNAQFQCTITGCPKPTISWLKGSREI 333
A + V ++ +AP + + + +F+C G P PT+ WLK +E
Sbjct: 2 AEDFVS-ENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 334 TPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
R + ++LI+ SV D Y C N+ G + L ++ + P
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH-RPI 119
Query: 393 RFRD-----TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG------HFHVETSE 441
+ G +V +P I W + E S + V
Sbjct: 120 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 442 RHAI-----LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
L + + + D Y N +G + + + + P
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229
Score = 88.0 bits (218), Expect = 7e-20
Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
+NE G + + + + + + NA+ + + +F C + +P I
Sbjct: 95 VENEYGSI---NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQ 151
Query: 326 WLKGSRE-----------ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 374
W+K + +H + L + +V DA EY+C+ N G
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
Query: 375 STKAELIIMTAPKFNVPPRFRD 396
+ A L ++ + P R ++
Sbjct: 212 NQSAWLTVLPKQQA--PGREKE 231
Score = 61.5 bits (149), Expect = 8e-11
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 10/122 (8%)
Query: 378 AELIIMTAPKFNVPPRFRDTAYFDK-------GENVVVKIPFTGYPKPKITWYRDNEVIE 430
AE + P + +T +K V + P G P P + W ++ + +
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61
Query: 431 SGGHFHV-ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD--PPQF 487
+ +H L + D Y V EN+ G + + + +R P
Sbjct: 62 QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQ 121
Query: 488 PT 489
Sbjct: 122 AG 123
Score = 44.5 bits (105), Expect = 4e-05
Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRK 60
+P + K + G+ + KNG+ + + R + V + + + ++ +
Sbjct: 26 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 85
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPG--PPI---GPLDVSEITKHTCTLH 109
D G+YT + N GS++ T+ +++ P + P + S +
Sbjct: 86 SDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 139
Score = 44.1 bits (104), Expect = 4e-05
Identities = 9/72 (12%), Positives = 24/72 (33%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
+ +G + + ++ + + + DAG+Y +SN G + +
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
Query: 81 FTINITGLPGPP 92
+ + P
Sbjct: 215 AWLTVLPKQQAP 226
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 130 bits (329), Expect = 2e-33
Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 12/225 (5%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIK--DPMAAKAPEIIVPLR---NANAIQNHNAQFQCT 315
++ A+ ++ ++++ +A + P + P + ++ + +C
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245
Query: 316 ITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS 375
+G P P I+W K ++ L I +V D+ EY C A NK G
Sbjct: 246 ASGVPTPDIAWYKKGGDLPSDKAKFENFNK---ALRITNVSEEDSGEYFCLASNKMGSIR 302
Query: 376 TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF 435
+ + AP + P+ GE+ + G PKP + W + E ++S
Sbjct: 303 HTISVRVKAAPYWLDEPK---NLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN 359
Query: 436 HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
+ RD A Y+ N+ G A + + D
Sbjct: 360 PNREVAGDT-IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 111 bits (280), Expect = 8e-27
Identities = 51/255 (20%), Positives = 90/255 (35%), Gaps = 34/255 (13%)
Query: 251 IPNLIEGRQYEFR-VY---AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAI 305
I GR E+ Y A+N+ G ++ SN ++++ +K+P L
Sbjct: 77 IDFRSGGRPEEYEGEYQCFARNKFG----TALSNRIRLQ---VSKSPLWPKENLDPVVVQ 129
Query: 306 QNHNAQFQCTIT-GCPKPTISWLKGSREITPS-ARHHIFAEGDTYTLIINSVYGVDAD-E 362
+ QC G P P I W+ S E R G L ++V D +
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG---DLYFSNVMLQDMQTD 186
Query: 363 YVCRAVNKGG----------VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF 412
Y C A +K + P F P + +G +++++
Sbjct: 187 YSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA 246
Query: 413 TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA 472
+G P P I WY+ + S + + L I + S D+ Y +A N +G
Sbjct: 247 SGVPTPDIAWYKKGGDLPSD---KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH 303
Query: 473 IVKIQISDRPDPPQF 487
+ +++ P +
Sbjct: 304 TISVRVK---AAPYW 315
Score = 102 bits (256), Expect = 1e-23
Identities = 46/246 (18%), Positives = 73/246 (29%), Gaps = 26/246 (10%)
Query: 272 LSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQFQCTITGCPKPTISWLKGS 330
+ +P S ++ P P I ++ N +C G P P+ W + S
Sbjct: 1 IEIPMDPSIQNELTQP-----PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNS 55
Query: 331 REITPSARHHIFAEGDTYTLIINSVYG----VDADEYVCRAVNK-GGVKSTKAELIIMTA 385
R + + + TL+I+ G EY C A NK G S + L + +
Sbjct: 56 RFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS 115
Query: 386 PKFNVPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDN-EVIESGGHFHVETSERH 443
P + P D +G + ++ P G P P I W + E I +
Sbjct: 116 PLW--PKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN--- 170
Query: 444 AILTIRDASNVDT-APYRVVAENDLGMDSA-------IVKIQISDRPDPPQFPTVEDIGH 495
L + D Y A V P F +
Sbjct: 171 GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS 230
Query: 496 DSLALV 501
+ L
Sbjct: 231 SQMVLR 236
Score = 44.5 bits (105), Expect = 7e-05
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
++ + G + ++ +G +++ K G + SD K + + I + +E
Sbjct: 229 ASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD---KAKFENFNKALRITNVSEE 285
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
D+G+Y SN GS+ T ++ + P P ++ L
Sbjct: 286 DSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLV 333
Score = 42.2 bits (99), Expect = 4e-04
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P L + G++ ++ G+ V NG +QS + II ++ +
Sbjct: 319 PKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTII-FRDTQIS 377
Query: 62 DAGDYTVNLSNSSGSVSGTFTINI 85
Y N SN G + +++
Sbjct: 378 SRAVYQCNTSNEHGYLLANAFVSV 401
Score = 39.1 bits (91), Expect = 0.003
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 8/107 (7%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD----YIIIFIKE 57
+ DN ++ G+ T+N R + ++ I
Sbjct: 24 AKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGG 83
Query: 58 IRKEDAGDYTVNLSNSSGSV-SGTFTINITGLP---GPPIGPLDVSE 100
+E G+Y N G+ S + ++ P + P+ V E
Sbjct: 84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQE 130
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 122 bits (308), Expect = 3e-33
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 468 GMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS 527
G A + +S PD P P + + +SL L W+AP D GS I N+++E E +
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNG 62
Query: 528 -WIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ + IT LSP +FR+ A N YG S S T+
Sbjct: 63 EFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 110
Score = 104 bits (260), Expect = 9e-27
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 7/122 (5%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
SSGS ++ P P P ++ TK++ TL W P D G K+ ++V+E +
Sbjct: 2 SSGSSGAEIFTTLSCEPDIPNPPR-IANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGK 59
Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
C F + L+ F + A N+ G E + + S
Sbjct: 60 GNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS-----GCSG 114
Query: 193 PG 194
P
Sbjct: 115 PS 116
Score = 95.9 bits (239), Expect = 6e-24
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
G + +P P P + + + L W P D GS+IQ + ++
Sbjct: 1 GSSGSSG---AEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWD 56
Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
E G + + + Q I L +FR+ A+N+ G S S
Sbjct: 57 E-GKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEV 105
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 130 bits (328), Expect = 3e-33
Identities = 47/232 (20%), Positives = 72/232 (31%), Gaps = 17/232 (7%)
Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASN----SVQIKDPMAAKAPEIIVPLRNANAIQ 306
I + +A + S S S+ +D + A+
Sbjct: 162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT 221
Query: 307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
+C G P P I W K T L I +V D Y C
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSS------EPLLHIQNVDFEDEGTYECE 275
Query: 367 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 426
A N G + + +II P + D G ++ +G P+P + W RD
Sbjct: 276 AENIKGRDTYQGRIIIHAQPDWLDVIT---DTEADIGSDLRWSCVASGKPRPAVRWLRDG 332
Query: 427 EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+ + S V E L D+ Y+ VAEN G A ++ +
Sbjct: 333 QPLASQNRIEVSGGE----LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 106 bits (265), Expect = 6e-25
Identities = 45/232 (19%), Positives = 68/232 (29%), Gaps = 25/232 (10%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTI 324
A N G + S ++ + F C+ P +
Sbjct: 81 ATNARG----TVVSREASLR--FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSY 134
Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-----VKSTKAE 379
WL A F T L I D Y C A + V S ++
Sbjct: 135 RWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQ 194
Query: 380 LIIMTAPKFNVPPRFRDTAYFD----KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF 435
L + P + D G+ V ++ G P P+I W + + S
Sbjct: 195 LSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---- 250
Query: 436 HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
+SE L I++ D Y AEN G D+ +I I P +
Sbjct: 251 KWLSSEPL--LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH---AQPDW 297
Score = 104 bits (260), Expect = 2e-24
Identities = 37/210 (17%), Positives = 57/210 (27%), Gaps = 13/210 (6%)
Query: 292 APEIIVPLRNANAIQNH---NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
P + + C P T W E+
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD- 62
Query: 349 TLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
+I N V DA Y C A N G V S +A L +F+ RD +G V+
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEE--RDPVKITEGWGVM 120
Query: 408 VK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
P YP W + S+ L I D Y A +
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180
Query: 467 LGMD-----SAIVKIQISDRPDPPQFPTVE 491
+ S ++ ++ P+++
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIK 210
Score = 95.7 bits (238), Expect = 2e-21
Identities = 61/383 (15%), Positives = 124/383 (32%), Gaps = 56/383 (14%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SG 79
+ P NG ++ ++ ++ ++I ++ +DAG Y +N+ G+V S
Sbjct: 33 ANPPATYRWKMNGTELKMGPDSRYRLVAGDLVI-SNPVKAKDAGSYQCVATNARGTVVSR 91
Query: 80 TFTINITGLPGPPIGPLDVSEITK-HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC 138
++ L D +IT+ +PP + L +++ +P
Sbjct: 92 EASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYR-WLLNEFPNFIPADGR 150
Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM----------------GPPLEGINPIK 182
+ + + A + + IK
Sbjct: 151 RFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK 210
Query: 183 AKSPYDKPSPPGIPVVTQ--VGGD-FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
AK P D + G V + G+ + W K GS+ + S+
Sbjct: 211 AKFPADTYALTGQMVTLECFAFGNPVPQIKWRK---LDGSQT------SKWLSSE----- 256
Query: 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL 299
++I N+ + + A+N G + + I P+ + +
Sbjct: 257 -------PLLHIQNVDFEDEGTYECEAENIKG---RDTYQGRIIIHAQ-----PDWLDVI 301
Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
+ A + ++ C +G P+P + WL+ + + R + L + + D
Sbjct: 302 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLED 357
Query: 360 ADEYVCRAVNKGGVKSTKAELII 382
+ Y C A NK G AEL +
Sbjct: 358 SGMYQCVAENKHGTVYASAELTV 380
Score = 53.7 bits (129), Expect = 8e-08
Identities = 25/195 (12%), Positives = 48/195 (24%), Gaps = 10/195 (5%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
P F P E V + P W + ++ G
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-GD 62
Query: 445 ILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWR 503
++ D Y+ VA N G + S ++ + + +++
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 504 APIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA-----ITGLSPGHQYEFRVYAEN 558
++ Y E P ++I RF + I + +A +
Sbjct: 123 CSPPPHYPALS-YRWLLNEFP--NFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS 179
Query: 559 VYGRSDPSTTSDLIT 573
S S
Sbjct: 180 HIDFITKSVFSKFSQ 194
Score = 42.5 bits (100), Expect = 2e-04
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
G + + +G V ++G+ + S +R + V + ++ E
Sbjct: 301 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIE--VSGGELRF--SKLVLE 356
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITG 87
D+G Y N G+V + + +
Sbjct: 357 DSGMYQCVAENKHGTVYASAELTVQA 382
Score = 39.1 bits (91), Expect = 0.003
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 6/99 (6%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
P Y G ++ F G+ ++ K + + + ++ I+ +
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG-----SQTSKWLSSEPLLH-IQNVDF 266
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVS 99
ED G Y N G + I I P D
Sbjct: 267 EDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTE 305
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 125 bits (316), Expect = 3e-33
Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 16/211 (7%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS---ARHHIFAEGD- 346
++P II + +N A C + G P+PTI W K ++ + + F +G
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMT-APKFNVPPRFRDTAYFDKGE 404
+ + D EY C A N+ G S A L I F V P+ KGE
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK---DTRVAKGE 124
Query: 405 NVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-----LTIRDASNVDTAP 458
+++ P G P+P + W +D ++ S R I L I + +D
Sbjct: 125 TALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGN 184
Query: 459 YRVVAENDLG-MDSAIVKIQISDRPDPPQFP 488
Y+ +A+N +G +S+ K+ + +
Sbjct: 185 YKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 82.6 bits (204), Expect = 4e-18
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT-ITGCPKPTI 324
A+N G ++ S S+QI A + V ++ + A +C G P+PT+
Sbjct: 88 AKNRVGQAV--SRHASLQI----AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTL 141
Query: 325 SWLKGSREITPSARHHIFAEG-----DTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKA 378
W+K + A D L+I++V +D Y C A N G +S+ A
Sbjct: 142 IWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYA 201
Query: 379 ELIIMTAPKFNVPPR 393
+LI+ +
Sbjct: 202 KLIVQVKAAAHHHHH 216
Score = 37.5 bits (87), Expect = 0.006
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 8/120 (6%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD----YIIIFIKE 57
P L + + + + G + K+G V ++++ V + ++
Sbjct: 16 PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQG 75
Query: 58 IRKEDAGDYTVNLSNSSGS-VSGTFTINITGLPGPPI--GPLDVSEITKHTCTLHWNPPK 114
+++D G+Y N G VS ++ I L P D T L PPK
Sbjct: 76 KKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR-DDFRVEPKDTRVAKGETALLECGPPK 134
Score = 37.2 bits (86), Expect = 0.007
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 6/78 (7%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIII-----FIKEIRKEDAGDYTVNLSNSSG 75
G + K+G + F I+ I + D G+Y N G
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 76 SV-SGTFTINITGLPGPP 92
+ S + +
Sbjct: 195 TRESSYAKLIVQVKAAAH 212
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 121 bits (306), Expect = 5e-33
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
SSGS PG P+ P +I H+ + W+PPK +GG + YVVE + S
Sbjct: 2 SSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGS 61
Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
+ + + + L G Y V +++ G E + ++P
Sbjct: 62 NGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSE---SLLVQTPAVSGPS 118
Query: 193 PG 194
G
Sbjct: 119 SG 120
Score = 115 bits (290), Expect = 7e-31
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 468 GMDSAIVKIQISDRPDPPQFPTV-EDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP-M 525
G + D+P P P+V I S + W P +GG+ I Y+VE E
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Query: 526 SSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ W + + L+PG Y RVY + G+S S + + T
Sbjct: 64 NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP 112
Score = 96.0 bits (239), Expect = 7e-24
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 8/125 (6%)
Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIP-VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDK 228
G ++ + DKP P P V ++ ++WD P D+GG+ I Y ++
Sbjct: 1 GSSGSSG---VVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEM 57
Query: 229 HEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM 288
E + + + A + L G Y RVY ++ G S S S+ ++ P
Sbjct: 58 AEGSNGNKWEM-IYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAV---SESLLVQTPA 113
Query: 289 AAKAP 293
+
Sbjct: 114 VSGPS 118
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 125 bits (316), Expect = 5e-33
Identities = 48/225 (21%), Positives = 76/225 (33%), Gaps = 15/225 (6%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
G P P + +W PP G K Y V+ +
Sbjct: 6 LGAPQNP-NAKAAGSRKIHFNWLPPS---G-KPMGYRVKYWIQGDSESEAHLLDSKVPSV 60
Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNL 208
+ L +Y V A G GP + ++ + PS PG V L
Sbjct: 61 ELTNLYPYCDYEMKVCAYGAQGEGPYSS---LVSCRTHQEVPSEPGRLAFNVVSSTVTQL 117
Query: 209 SWDKPLDDGGSRIQGYWIDKHEVGSD-----AWQRVNVAICAPSQINIPNLIEGRQYEFR 263
SW +P + G I Y + V D ++V V + I NL E + Y +
Sbjct: 118 SWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT 176
Query: 264 VYAQNEAGLSLPSSASNSVQIKDPMAAKAPEII-VPLRNANAIQN 307
V A+N AG A ++ + P I +P+ +A + ++
Sbjct: 177 VKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGED 221
Score = 73.7 bits (181), Expect = 5e-15
Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 28/178 (15%)
Query: 412 FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEND 466
GY ++ ++ + +++ LT + PY +V A
Sbjct: 33 PMGY---RVKYWIQGD--SESEAHLLDSKVPSVELT-------NLYPYCDYEMKVCAYGA 80
Query: 467 LGM--DSAIVKIQ-ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH 523
G S++V + + P P + L W P G IT Y V
Sbjct: 81 QGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLV 139
Query: 524 -----PMSSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
P+ +V N + + I L Y + V A N G + T
Sbjct: 140 NDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLAT 197
Score = 64.8 bits (158), Expect = 5e-12
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-IRVGNTRFTTMA 540
PQ P + G + W P Y V+ S + +++ ++
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVE 61
Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGE 577
+T L P YE +V A G S+ T
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEV 98
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 126 bits (318), Expect = 1e-32
Identities = 43/220 (19%), Positives = 78/220 (35%), Gaps = 13/220 (5%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
E G S A+ +V+I + +A C + PTI
Sbjct: 81 VTAEDGTQ--SEATVNVKIFQK-----LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTII 133
Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG--VKSTKAELIIM 383
W R++ + L I + D Y C + ++I+
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE--TSE 441
P + + G++V + G+P+P ++W +D E IE+ + S+
Sbjct: 193 VPPTVQARQSIVNA-TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 251
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
+ LTIR+ D A Y +AEN G A + +++ +
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 118 bits (296), Expect = 9e-30
Identities = 38/202 (18%), Positives = 60/202 (29%), Gaps = 10/202 (4%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPK-PTISWLKGSREITPSARHHI---FAEGD 346
+ ++ + + F C + G K ISW + E + I + + D
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGEN 405
+ TL I + DA Y C + G + + I F P F +GE+
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKEGED 117
Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
V+ P I W + + L IR D YR
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRI 176
Query: 466 DLGMDSAIVKIQISDRPDPPQF 487
+ IQ+ PP
Sbjct: 177 LARGEINFKDIQVIVN-VPPTV 197
Score = 41.8 bits (98), Expect = 4e-04
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 5/112 (4%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P EG++ + P + GR V +F VL + + I+ I+K
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL-QIRGIKKT 165
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPI----GPLDVSEITKHTCTLH 109
D G Y + I + P + ++ + + TL
Sbjct: 166 DEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLV 217
Score = 38.3 bits (89), Expect = 0.005
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRF--KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
G +S TK+G +++++ K DD + I+ + K D +Y N +G
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 79 GTFTINITG 87
+ + +
Sbjct: 282 ASIHLKVFA 290
Score = 30.6 bits (69), Expect = 1.3
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 31 KNGRVVQSDD-RFKFTVLDDYI-IIFIKEIRKEDAGDYTVNLSNSSGS-VSGTFTINITG 87
NG + + R DD + I +DAG Y ++ G+ T + I
Sbjct: 40 PNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ 99
Query: 88 LPGPPIGPLDVS 99
P
Sbjct: 100 KLMFKNAPTPQE 111
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 126 bits (318), Expect = 1e-32
Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 25/239 (10%)
Query: 261 EFRVYAQNEAG-----LSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT 315
+ + G L + + + L + +
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131
Query: 316 ITGCPKPTISWLKGSREITPSARHHIFAEGDT--YTLIINSVYGVDADEYVCRAVNKGGV 373
++++ +EI ++ + + +T + + + D Y + +
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191
Query: 374 KSTKAELIIMTAPKFNVPPRFRDTAYFDK---------------GENVVVKIPFTGYPKP 418
+ L+ K F+ + K NV++K K
Sbjct: 192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE 251
Query: 419 -KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI 476
I WY+D I + + L I + S D Y V+ ++D G D + +K+
Sbjct: 252 THIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
Score = 125 bits (316), Expect = 3e-32
Identities = 26/215 (12%), Positives = 61/215 (28%), Gaps = 13/215 (6%)
Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 349
P + N + + F+C PK SW K S R + ++G+
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYF--------- 400
+ + D Y C + G+ S+ + +
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 401 -DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF--HVETSERHAILTIRDASNVDTA 457
+KG+ K+ + + + I G + H++ + + + + D
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 179
Query: 458 PYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
Y ++ + + V + + +
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 214
Score = 86.2 bits (213), Expect = 1e-18
Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 15/144 (10%)
Query: 251 IPNLIEGRQYEFRVYAQNEAG-----------LSLPSSASNSVQIKDPMAAKAPEIIVPL 299
+ L + + + Q+ + Q ++ + + P + L
Sbjct: 170 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 229
Query: 300 RNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
+ N +C + K T I W K REI+ +H + TL+I
Sbjct: 230 -SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKK 286
Query: 359 DADEYVCRAVNKGGVKSTKAELII 382
DA Y + G ++ +L+
Sbjct: 287 DAGIYEVILKDDRGKDKSRLKLVD 310
Score = 53.1 bits (127), Expect = 9e-08
Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
+V+ N + + ++K + + I +F+++++ ED G YT L + +
Sbjct: 134 LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH 193
Query: 79 GTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP 134
T L G L + + P + L V ++ +
Sbjct: 194 STVV-----LVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE--VTGECNVLLK 242
Score = 52.7 bits (126), Expect = 1e-07
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 7 IPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGD 65
+ N +K A + + K+ R + D++ F D + I E K+DAG
Sbjct: 233 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGI 290
Query: 66 YTVNLSNSSGSVSGTFTINITG 87
Y V L + G +
Sbjct: 291 YEVILKDDRGKDKSRLKLVDEA 312
Score = 48.8 bits (116), Expect = 2e-06
Identities = 10/62 (16%), Positives = 25/62 (40%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
E S +K+ + R + + + K++ +D G Y+ +++++ G S
Sbjct: 28 MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSY 87
Query: 81 FT 82
Sbjct: 88 LI 89
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 123 bits (310), Expect = 2e-32
Identities = 50/211 (23%), Positives = 73/211 (34%), Gaps = 18/211 (8%)
Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH--IFAEGDT 347
A PEII +N A F C G P P+I W K ++++ + + + G
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 348 YTLIINSVYGV-DADEYVCRAVNK-GGVKSTKAELIIMT-------APKFNVPPRFRDTA 398
L I V D Y C A N G S A L I P P R
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 399 YFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAP 458
G V++ G P P I W ++ ++ + L I ++ D
Sbjct: 124 ---VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD---GFLQIENSREEDQGK 177
Query: 459 YRVVAENDLGMD-SAIVKIQISDRPDPPQFP 488
Y VAEN +G + S + + R +
Sbjct: 178 YECVAENSMGTEHSKATNLYVKVRRVGTKHH 208
Score = 105 bits (264), Expect = 3e-26
Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 4/128 (3%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
A+N G ++ + A+ ++ D A P I H C G P P I
Sbjct: 84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIY 143
Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMT 384
W+K ++ S + +G L I + D +Y C A N G S L +
Sbjct: 144 WIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200
Query: 385 APKFNVPP 392
Sbjct: 201 RRVGTKHH 208
Score = 37.8 bits (88), Expect = 0.004
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
+ KN V + L D + I+ R+ED G Y NS G+
Sbjct: 141 NIYWIKNQTKVDMSNPRY--SLKDGFLQ-IENSREEDQGKYECVAENSMGTEHSK 192
Score = 34.4 bits (79), Expect = 0.054
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRK-EDAGDYTVNLSNSSG-S 76
GD P + KNG+ V + I+ I+ +R D Y N G +
Sbjct: 32 GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDA 91
Query: 77 VSGTFTINITGLPGPPIGP 95
VS T+ I P G
Sbjct: 92 VSADATLTIYEGDKTPAGF 110
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 121 bits (304), Expect = 7e-32
Identities = 36/193 (18%), Positives = 57/193 (29%), Gaps = 9/193 (4%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPK-PTISWLKGSREITPSARHHI---FAEGD 346
+ ++ + + F C + G K ISW + E + I + + D
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGEN 405
+ TL I + DA Y C + G + I F P F +GE+
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKEGED 117
Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
V+ P I W + + L IR D YR
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRI 176
Query: 466 DLGMDSAIVKIQI 478
+ IQ+
Sbjct: 177 LARGEINFKDIQV 189
Score = 84.5 bits (209), Expect = 5e-19
Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 8/119 (6%)
Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTI 324
E G ++ + + K + +A C + PTI
Sbjct: 80 VVTAEDGTQSEATVNVKIFQK-------LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132
Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
W R++ + L I + D Y C + ++ ++
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 41.7 bits (98), Expect = 2e-04
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
P + GR V +F VL + + I+ I+K D G Y +
Sbjct: 126 SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-IRGIKKTDEGTYRCEGRILARGEINF 184
Query: 81 FTINIT 86
I +
Sbjct: 185 KDIQVI 190
Score = 30.6 bits (69), Expect = 0.96
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 2 PNALYIPEGDNTKVKIFYAGD-QPMEVS-LTKNGRVVQSDD-RFKFTVLDDYI-IIFIKE 57
P+ I G++ AGD + ++S + NG + + R DD + I
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 68
Query: 58 IRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPI 93
+DAG Y ++ G+ S T+N+
Sbjct: 69 ANIDDAGIYKCVVTAEDGTQS-EATVNVKIFQKLMF 103
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 117 bits (295), Expect = 1e-31
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTM 539
PQ TVED+ + L WR P G I Y+VE W+
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ L G + FRV N+ GRS+P+T +T
Sbjct: 69 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI 103
Score = 114 bits (288), Expect = 1e-30
Identities = 27/101 (26%), Positives = 38/101 (37%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
S P V V L W P G I GY ++ GS+ W N
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
+ +L G + FRV N AG S P++ V I++ +
Sbjct: 69 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPS 109
Score = 106 bits (266), Expect = 1e-27
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCH 144
+G P L V ++T T TL W PP G + Y+VE W+
Sbjct: 6 SGPTSAP-QHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVE 64
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
F V+ L G LF V+ VN G P + P+ + G
Sbjct: 65 RCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRES---GPSSG 111
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 117 bits (295), Expect = 1e-31
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
S+ +SD P PP P V D+ +S+ L W+ G + YI+E +S+
Sbjct: 4 GSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSW 62
Query: 530 RVGNT--RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ + T + GL P Y F V A N G SDPS SD + T
Sbjct: 63 QTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT 109
Score = 115 bits (289), Expect = 8e-31
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 76 SVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP- 134
S S +++ LPGPP P V+++TK++ TL W P G L + Y++E S+
Sbjct: 3 SGSSGKNYDLSDLPGPPSKPQ-VTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSN 60
Query: 135 HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
W ++ T + V+GL YLF V A+N G+ P +P++ + D G
Sbjct: 61 SWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ---DSGPSSG 117
Score = 101 bits (254), Expect = 5e-26
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
D P PP P VT V + V LSW +P G Y I+ +
Sbjct: 11 DLSDLPGPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHV 69
Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
+ + L Y F V A N GLS PS S+ V+ +D
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 117 bits (295), Expect = 1e-31
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
PPG PV + V L W KP GG +I Y ++K ++ + W + N + ++
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 250 NIPNLIEGRQYEFRVYAQNEAG-LSLPSSASNSVQIKDPMAA 290
+ L E YEFRV A+N AG +S PS S+++ +D + A
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 114 bits (287), Expect = 2e-30
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTM 539
DPP P +I ++ L W P + GG IT+YIVEKR+ P W++ N
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 540 AITGLSPGHQYEFRVYAENVYGR-SDPSTTSDLITT 574
++GL+ YEFRV A+N G S PS SD IT
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 106
Score = 102 bits (255), Expect = 4e-26
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTT 147
PP P+ IT+HT TL W P+Y GG K+T Y+VE+RD+ W+ + +
Sbjct: 11 IDPPGKPV-PLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 69
Query: 148 FIVQGLTEGQEYLFHVMAVNENG-MGPPLEGINPIKAKSPYD 188
F V GLTE Y F V+A N G + PP E + I + +
Sbjct: 70 FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVE 111
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 124 bits (312), Expect = 4e-31
Identities = 43/222 (19%), Positives = 76/222 (34%), Gaps = 17/222 (7%)
Query: 261 EFRVYAQNEAGLSLPSSAS-NSVQIKDPMAAKAPEIIVPL-RNANAIQNHNAQFQCTITG 318
++ ++ SA+ + I +P+++ AP + + + H C G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238
Query: 319 CPKPTISWLKGSREITPSARHHIFAEGDTY--TLIINSVYGVDADEYVCRAVNKGGVKST 376
P P+ W K T + TLII D+ +Y+C N G +S
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298
Query: 377 KAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH 436
+ L + + P T D G V +TG P ++W +D + I
Sbjct: 299 ETVLTVTAPLSAKIDPP---TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES-- 353
Query: 437 VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+L I D Y+ ND A ++++
Sbjct: 354 --------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 107 bits (268), Expect = 2e-25
Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 31/240 (12%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI---TGCPKP 322
A+N+ G S S V ++ A A + + I+ ++A +C I
Sbjct: 84 ARNQFG----SIISRDVHVR---AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE 136
Query: 323 TISWLKGSRE-----ITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRAVNKGG---V 373
+SW E ++ + G L I V D Y CR ++
Sbjct: 137 VVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETR 193
Query: 374 KSTKAELIIMTAPKFNVPPR----FRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 429
S +++T P + PR + + + P G+P P WY+ E
Sbjct: 194 LSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253
Query: 430 ESG--GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
+ + L I+DA D+ Y V N +G +S + ++ P
Sbjct: 254 TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT---APLSA 310
Score = 89.2 bits (221), Expect = 3e-19
Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 31/223 (13%)
Query: 291 KAPEIIV-PLRNANAIQNHNAQFQCTITGCPKPTISWLK--GSREITPSARHHIFAEGDT 347
K P + P + + A+ +C +G P P I W++ G+ I ++G
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-- 59
Query: 348 YTLIINSVYG------VDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYF 400
L+ V A Y C A N+ G + S + + A + +
Sbjct: 60 -KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVN---KEHV 115
Query: 401 DKGENVVVK---IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-----LTIRDAS 452
+G + V+K F ++W+ D E E ++ + L IR+
Sbjct: 116 IRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP---GAEYDGKYLVLPSGELHIREVG 172
Query: 453 NVDT-APYRVVAENDLGMD---SAIVKIQISDRPDPPQFPTVE 491
D Y+ ++ L + SA + P P
Sbjct: 173 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP 215
Score = 87.7 bits (217), Expect = 9e-19
Identities = 61/416 (14%), Positives = 114/416 (27%), Gaps = 74/416 (17%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-----IK 56
N + +++ +G+ E+ ++ D + D ++F
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED 70
Query: 57 EIRKEDAGDYTVNLSNSSGSV-SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKY 115
++ A Y N GS+ S + I ++ + P +
Sbjct: 71 YRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF 130
Query: 116 DGGLK-VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV----------- 163
V + + + P +D ++V L G+ ++ V
Sbjct: 131 VADFVEVVSWHTDEEENYFPG------AEYDGKYLV--LPSGELHIREVGPEDGYKSYQC 182
Query: 164 MAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQ-----VGGDFVNL---------- 208
+ L + S P P + Q + ++L
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP 242
Query: 209 --SWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYA 266
W K G+ + V +D ++V+ + I + + ++
Sbjct: 243 SFRWYK--FIEGTTR-----KQAVVLNDRVKQVS------GTLIIKDAVVEDSGKYLCVV 289
Query: 267 QNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW 326
N G S + + P + A F C TG P T+SW
Sbjct: 290 NNSVGGE---SVETVLTVTAP-----LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341
Query: 327 LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+K + I S L I SV D Y C N AEL +
Sbjct: 342 MKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 38.0 bits (88), Expect = 0.008
Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 8/114 (7%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-----I 55
+ L + + G K VL+D + I
Sbjct: 218 VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAV---VLNDRVKQVSGTLII 274
Query: 56 KEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
K+ ED+G Y ++NS G S + +T I P +
Sbjct: 275 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 328
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 123 bits (311), Expect = 4e-31
Identities = 41/215 (19%), Positives = 70/215 (32%), Gaps = 15/215 (6%)
Query: 66 YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYV 125
Y V++ + PP L + I T + W PP + +T+++
Sbjct: 71 YNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFL 127
Query: 126 VERRDISMPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
V + + +S + D ++ L G EY+ V +V E PL G
Sbjct: 128 VRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG------- 180
Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
P + + + + W P + I GY I H R +
Sbjct: 181 RQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPH 236
Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ + I + NL G +Y + A N S
Sbjct: 237 SRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ 271
Score = 122 bits (307), Expect = 1e-30
Identities = 48/223 (21%), Positives = 73/223 (32%), Gaps = 20/223 (8%)
Query: 66 YTVNLS--NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
Y V++S S P G +D S+IT ++ T+HW P +T
Sbjct: 162 YVVSVSSVYEQHE-STPLRGRQKTGLDSPTG-IDFSDITANSFTVHWIAP--RA--TITG 215
Query: 124 YVVERRDISMPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
Y + + + LT G EY+ ++A+N P L
Sbjct: 216 YRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI------ 269
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
P V + +SWD P ++ Y I E G ++ +
Sbjct: 270 -GQQSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTV 324
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
+ S I L G Y VYA G S SS S+ +
Sbjct: 325 PGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367
Score = 111 bits (280), Expect = 5e-27
Identities = 77/404 (19%), Positives = 120/404 (29%), Gaps = 70/404 (17%)
Query: 190 PSPP-GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS- 247
SPP + + + +SW++ I GY I + + A
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM-----AAKAPEIIV---PL 299
NL G +Y VY + S+P S + + P + V P
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPP 118
Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
+ + + N ++ +S I+PS + T
Sbjct: 119 PSID-LTNFLVRYSPVKNEEDVAELS-------ISPSDNAVVLTNLLPGT---------- 160
Query: 360 ADEYVCR--AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV------VKIP 411
EYV +V + ST T P + D N +
Sbjct: 161 --EYVVSVSSVYEQHE-STPLRGRQKTGL---DSPT--GIDFSDITANSFTVHWIAPRAT 212
Query: 412 FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEND 466
TGY +I + V S LT + P +VA N
Sbjct: 213 ITGY---RIR-HHPEHFSGRPREDRVPHSRNSITLT-------NLTPGTEYVVSIVALNG 261
Query: 467 LGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
+S ++ Q S D P+ V SL + W AP + Y + E +
Sbjct: 262 RE-ESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGN 316
Query: 527 SWIRVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTT 568
S ++ +T I+GL PG Y VYA G S S+
Sbjct: 317 SPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSK 360
Score = 99 bits (249), Expect = 6e-23
Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 15/193 (7%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC--HDT 146
PP + T+ W +T Y + + + +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFV 206
+ L+ G EY V V ++ P+ PP T +G D +
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTII-------PAVPPPTDLRFTNIGPDTM 111
Query: 207 NLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYA 266
++W P + + + V ++ + + + + NL+ G +Y V +
Sbjct: 112 RVTWAPP---PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSS 168
Query: 267 QNEAGLSLPSSAS 279
E S P
Sbjct: 169 VYEQHESTPLRGR 181
Score = 81.4 bits (201), Expect = 7e-17
Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 21/166 (12%)
Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEN 465
TGY +IT N + V + + +P V
Sbjct: 30 DITGY---RITTTPTNGQQGNSLEEVVHADQSSCTFD-------NLSPGLEYNVSVYTVK 79
Query: 466 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
D S + I PP +IG D++ + W P ++TN++V
Sbjct: 80 DDKE-SVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKN 135
Query: 526 SSWIRVGN--TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+ + + +T L PG +Y V + S P
Sbjct: 136 EEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 181
Score = 78.7 bits (194), Expect = 7e-16
Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 23/166 (13%)
Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEN 465
T + + Y + E + S+ +LT + P V +
Sbjct: 122 DLTNF----LVRYSPVKNEEDVAELSISPSDNAVVLT-------NLLPGTEYVVSVSSVY 170
Query: 466 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
+ +S ++ + D P DI +S + W AP + IT Y +
Sbjct: 171 EQH-ESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHF 225
Query: 526 SSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
S R ++ +T L+PG +Y + A N S
Sbjct: 226 SGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ 271
Score = 65.2 bits (159), Expect = 1e-11
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 482 PDPPQFPTVEDIGH-DSLALVWRAPIWDGGSNITNYIVEKRE---HPMSSWIRVGNTRFT 537
PP +E L + W +IT Y + +S V + +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+ LSPG +Y VY S P + +
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDT 90
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 115 bits (291), Expect = 4e-31
Identities = 27/105 (25%), Positives = 42/105 (40%)
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
S SPP + V V V + W P G + + GY ++ G++ W N
Sbjct: 1 GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKD 60
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
+ ++ I L + RV A N AG S P S + +K+
Sbjct: 61 LIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKES 105
Score = 115 bits (290), Expect = 7e-31
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRF 536
S PP TV+ + ++ + WR P G + + Y++E WI
Sbjct: 5 SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDK 64
Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
T ITGL + RV A N G S+P S I
Sbjct: 65 TKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILV 102
Score = 106 bits (267), Expect = 8e-28
Identities = 30/107 (28%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTT 147
PP L V +T T T+ W PP + G + YV+E WI T
Sbjct: 8 TSPP-TLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66
Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
F + GL + V AVN G P PI K G
Sbjct: 67 FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGP---SSG 110
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 115 bits (289), Expect = 6e-31
Identities = 26/105 (24%), Positives = 45/105 (42%)
Query: 282 VQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI 341
++ P + R + A+ +C + G P P + W KG +++ S R
Sbjct: 3 MKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSF 62
Query: 342 FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
A+G + L++ + DA YVCRA N G A + ++ P
Sbjct: 63 PADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 73.6 bits (181), Expect = 4e-16
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
+ P F PR G +K G P P + W + + + +
Sbjct: 12 SPPCFLRFPR--PVRVVS-GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAE 68
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
L + A D Y A N G A + + + P
Sbjct: 69 HGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 53.9 bits (130), Expect = 3e-09
Identities = 17/88 (19%), Positives = 32/88 (36%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P + + G ++K G+ P V K G+ + + +R F + +
Sbjct: 20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT 79
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLP 89
DAG Y N++G + + P
Sbjct: 80 DAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 118 bits (296), Expect = 8e-31
Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 17/195 (8%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS--WLKGSREITPSARHHIFAEGDTYT 349
P I+ QC +T + W K E+T + ++
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNME 57
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 409
IN D+ EY C + A + + AP R + ++G++ ++
Sbjct: 58 YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKR---SENKNEGQDAMMY 113
Query: 410 IPFTGYPKPKITWYRDNEVI-----ESGGHFHVETSERHAILTIRD-ASNVDTAPYRVVA 463
GYP P+ W + + S G F + E + L I + D Y A
Sbjct: 114 CKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNA 173
Query: 464 ENDLGMDSAIVKIQI 478
N +G S +++
Sbjct: 174 TNSIGSASVSTVLRV 188
Score = 78.0 bits (192), Expect = 7e-17
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 11/112 (9%)
Query: 277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP- 335
A+ ++++K P+I R+ N + +A C G P P W K +
Sbjct: 82 KANATIEVKAA-----PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE 136
Query: 336 ----SARHHIFAEGDTYTLIINSVYGV-DADEYVCRAVNKGGVKSTKAELII 382
S R I + + L I ++ D EY C A N G S L +
Sbjct: 137 ISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 37.9 bits (88), Expect = 0.004
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 21 GDQPMEVSLTKNGRVV-----QSDDRFKFTVLDDYIIIFIKEIR-KEDAGDYTVNLSNSS 74
G E K V S RF ++Y + I ++ ED G+Y N +NS
Sbjct: 118 GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSI 177
Query: 75 GSVSGTFTINI 85
GS S + + +
Sbjct: 178 GSASVSTVLRV 188
Score = 33.7 bits (77), Expect = 0.081
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 30 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
TKNG + + + + I + R ED+G+Y + + + TI + P
Sbjct: 40 TKNGVELTATRK----NASNMEYR-INKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAP 93
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 117 bits (295), Expect = 1e-30
Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 21/200 (10%)
Query: 296 IVPLRNANAIQNHNAQFQ-CTITGCPKPTISWLKGSREITPSARHHIFAEGDT--YTLII 352
++ +F ++++ +EI ++ + + +T + +
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65
Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDK---------- 402
+ D Y + + + L+ K F+ + K
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS 125
Query: 403 -----GENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDT 456
NV++K K I WY+D I + L I + S D
Sbjct: 126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI--CTLLITEFSKKDA 183
Query: 457 APYRVVAENDLGMDSAIVKI 476
Y V+ ++D G D + +K+
Sbjct: 184 GIYEVILKDDRGKDKSRLKL 203
Score = 83.4 bits (206), Expect = 1e-18
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 15/147 (10%)
Query: 248 QINIPNLIEGRQYEFRVYAQNEAG-----------LSLPSSASNSVQIKDPMAAKAPEII 296
++ + L + + + Q+ + Q ++ + + P +
Sbjct: 62 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121
Query: 297 VPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSV 355
L + N +C + K T I W K REI+ +H + TL+I
Sbjct: 122 EYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEF 178
Query: 356 YGVDADEYVCRAVNKGGVKSTKAELII 382
DA Y + G ++ +L+
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 56.5 bits (136), Expect = 3e-09
Identities = 10/109 (9%), Positives = 28/109 (25%), Gaps = 4/109 (3%)
Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
F +KG+ K+ + + + I G + + I
Sbjct: 3 DPFTKSEL--AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 446 --LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
+ + + D Y ++ + + V + + +
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109
Score = 50.3 bits (120), Expect = 3e-07
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 2 PNALYIPEGDNTKVKI-FYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYII--IFIKEI 58
A+ I E + + +V+ N + + ++K + + I +F++++
Sbjct: 9 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 68
Query: 59 RKEDAGDYTVNLSNSSGSVSGTFT 82
+ ED G YT L + + T
Sbjct: 69 QDEDEGTYTFQLQDGKATNHSTVV 92
Score = 50.3 bits (120), Expect = 3e-07
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
+ + K+ R + D++ F D + I E K+DAG Y V L + G
Sbjct: 143 IKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR 200
Query: 81 FTI 83
+
Sbjct: 201 LKL 203
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 114 bits (288), Expect = 2e-30
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 468 GMDSAIVKIQISDRPDPPQFP--TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
G +++ P P+ P T+ + ++ L W P DG S + YI+E E+
Sbjct: 4 GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNA 62
Query: 526 SSWIRVGNT--RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ + + + T++ + GL P Y+FR+ A N G+ S ++ ++
Sbjct: 63 PWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL 113
Score = 110 bits (278), Expect = 4e-29
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 73 SSGSVSGTFTINITGLPGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI 131
SSGS + + + LP P P +S + + L W P +DG + Y++E +
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSEN 60
Query: 132 SMPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKP 190
+ P + +++ T+ V+GL + Y F + AVN+ G G + + P P
Sbjct: 61 NAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL--PESGP 118
Query: 191 S 191
S
Sbjct: 119 S 119
Score = 98.2 bits (245), Expect = 1e-24
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 188 DKPSPPGIPVVT--QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
P P PV T V +NL+W KP DG S + Y ++ E + +
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPK 74
Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
+ + + L+ R Y+FR+ A N+ G S + V + +
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 116 bits (292), Expect = 4e-30
Identities = 32/203 (15%), Positives = 72/203 (35%), Gaps = 20/203 (9%)
Query: 90 GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH-WICISTTCHDTTF 148
GP + + ++ + WN P+ ++ Y++ R + W + H ++
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGI------------NPIKAKSPYDKPSPPGIP 196
++GL G Y ++++ + G N + ++ P
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 197 VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIE 256
VT++ +SW + G+ ++ + + +NIP+L+
Sbjct: 119 SVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLP 174
Query: 257 GRQYEFRVYAQNEAGLSLPSSAS 279
GR+Y VY +E G ++
Sbjct: 175 GRKYIVNVYQISEDGEQSLILST 197
Score = 66.6 bits (162), Expect = 8e-13
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV----GNTRFTTM 539
F T +S + W AP S+I+ YI+ R + G+ +
Sbjct: 4 VEVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHL--NSY 58
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
I GL PG YE ++ + YG + + T+
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTS 93
Score = 65.5 bits (159), Expect = 2e-12
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN--TRFT 537
P +V +I S + W + ++ + VE + + + T
Sbjct: 110 FSPLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTAT 165
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
++ I L PG +Y VY + G ++ T
Sbjct: 166 SVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 59.3 bits (143), Expect = 3e-10
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
S+ S T T T V+EIT + + W V+ + VE
Sbjct: 95 STPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSE 150
Query: 133 MPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
+ T+ + L G++Y+ +V ++E+G +
Sbjct: 151 EGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILST 197
Score = 56.2 bits (135), Expect = 3e-09
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 3/93 (3%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
T + + W+ P S I Y + S + +
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
I L G YE ++ + + G + +
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTT 91
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 124 bits (312), Expect = 4e-30
Identities = 77/505 (15%), Positives = 134/505 (26%), Gaps = 100/505 (19%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P G+N + A + P + S NG QS FI I
Sbjct: 210 PLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQEL-----------FIPNITVN 258
Query: 62 DAGDYTVNLSNSSG--SVSGTFTINITGLPGPPIG------PLDVSEITKHTCTLHWNPP 113
++G YT NS + + TI + P P P++ + TC
Sbjct: 259 NSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNT 318
Query: 114 KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP 173
Y+ + S+P + + + T + +T + +N +
Sbjct: 319 ---------TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGI--QNELSV 367
Query: 174 PL-EGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNL------------SW---DKPLDDG 217
+ + P D P G ++L SW
Sbjct: 368 DHSDPVILNVLYGPDDPTISPSYTYYRP--GVNLSLSCHAASNPPAQYSWLIDGNIQQHT 425
Query: 218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
+ I N+ E + A N A +
Sbjct: 426 QE-----------------------------LFISNITEKNSGLYTCQANNSAS-GHSRT 455
Query: 278 ASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA 337
++ + A I + F C + W+ G + + S
Sbjct: 456 TVKTITV---SAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNG-QSLPVSP 511
Query: 338 RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRD 396
R + TL + +V DA YVC N +S L ++ P P
Sbjct: 512 RLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD--TPIISPP 567
Query: 397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDT 456
+ + G N+ + P P+ +W + + L I + +
Sbjct: 568 DSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQV-----------LFIAKITPNNN 616
Query: 457 APYRVVAENDLGMD--SAIVKIQIS 479
Y N S + I +S
Sbjct: 617 GTYACFVSNLATGRNNSIVKSITVS 641
Score = 113 bits (285), Expect = 1e-26
Identities = 69/472 (14%), Positives = 117/472 (24%), Gaps = 106/472 (22%)
Query: 54 FIKEIRKEDAGDYTVNLSNSSG---SVSGTFTINITGLPGPPIGPLDVSEITKH-----T 105
I+ I + D G YT+++ S +G F + LP P I + + T
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPE-LPKPSISSNNSKPVEDKDAVAFT 132
Query: 106 CTLHWNPPKY-----DGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL 160
C Y + L V+ R +S + T + +T
Sbjct: 133 CEPETQDATYLWWVNNQSLPVSP----RLQLSNG----------NRTLTLFNVTRNDTAS 178
Query: 161 FHVMAVNENGM------------GPPLEGINPIKAKSPYDKP-----SPPGIPVVTQVGG 203
+ N GP I+P+ + P
Sbjct: 179 YKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQ---- 234
Query: 204 DFVNLSW---DKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQY 260
SW + IPN+
Sbjct: 235 ----YSWFVNGTFQQSTQE-----------------------------LFIPNITVNNSG 261
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
+ A N + + I P I + C
Sbjct: 262 SYTCQAHNSDT---GLNRTTVTTITVYAEPPKP-FITSNNSNPVEDEDAVALTCEPEIQN 317
Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAE 379
T W ++ + S R + + T L + SV D Y C N+ S
Sbjct: 318 -TTYLWWVNNQSLPVSPRLQLSNDNRT--LTLLSVTRNDVGPYECGIQNELSVDHSDPVI 374
Query: 380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET 439
L ++ P T Y+ G N+ + P + +W D + +
Sbjct: 375 LNVLYGPDD-PTISPSYT-YYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE----- 427
Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
L I + + ++ Y A N S I+ + P+
Sbjct: 428 ------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS 473
Score = 111 bits (278), Expect = 7e-26
Identities = 47/293 (16%), Positives = 88/293 (30%), Gaps = 23/293 (7%)
Query: 201 VGGDFVNLSWDK-PLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQ 259
+ SW K DG +I GY I + I + + I N+I+
Sbjct: 24 LPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDT 83
Query: 260 YEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC 319
+ ++ ++ ++ V + P I + F C
Sbjct: 84 GFYTLHVIKSDLVNEEATGQFRVYPELP-----KPSISSNNSKPVEDKDAVAFTCEPETQ 138
Query: 320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKA 378
T W ++ + S R + TL + +V D Y C N +S
Sbjct: 139 D-ATYLWWVNNQSLPVSPRLQLSNGN--RTLTLFNVTRNDTASYKCETQNPVSARRSDSV 195
Query: 379 ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE 438
L ++ P P + GEN+ + P + +W+ + +S
Sbjct: 196 ILNVLYGPDA--PTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE---- 249
Query: 439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
L I + + ++ Y A N + I+ +PP+
Sbjct: 250 -------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS 295
Score = 105 bits (264), Expect = 5e-24
Identities = 33/225 (14%), Positives = 64/225 (28%), Gaps = 22/225 (9%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
QNE S+ V + + + + N C P S
Sbjct: 361 IQNELS----VDHSDPVILN--VLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYS 414
Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
WL + L I+++ ++ Y C+A N S I +
Sbjct: 415 WLIDGNIQQHTQ-----------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463
Query: 386 PKFNVPPRFRDTAY-FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
+ P + + + + V W+ + + + + R
Sbjct: 464 AELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSNGNR-- 520
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFP 488
LT+ + + D Y +N + + S V + + PD P
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIIS 565
Score = 102 bits (256), Expect = 4e-23
Identities = 45/307 (14%), Positives = 85/307 (27%), Gaps = 36/307 (11%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
QN S S + + + N + N C P S
Sbjct: 183 TQNPVSARR--SDSVILNVLYG----PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYS 236
Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
W + L I ++ ++ Y C+A N + I
Sbjct: 237 WFVNGTFQQSTQ-----------ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY 285
Query: 386 PKFNVPP-RFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
+ P ++ + + V + W+ +N+ + + R
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDNR-- 342
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWR 503
LT+ + D PY +N+L +D S V + + PD P + L
Sbjct: 343 TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLS 402
Query: 504 APIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT--TMAITGLSPGHQYEFRVYAENVYG 561
+ Y SW+ GN + + I+ ++ + + A N
Sbjct: 403 CHA--ASNPPAQY----------SWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSAS 450
Query: 562 RSDPSTT 568
+T
Sbjct: 451 GHSRTTV 457
Score = 88.1 bits (218), Expect = 2e-18
Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 30/208 (14%)
Query: 303 NAIQNHNAQFQCTITGCPKPTISWLKGSREIT-------------------PSARHHIFA 343
N + SW KG R S R I+
Sbjct: 10 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 69
Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGV--KSTKAELIIMTAPKFNVPPRFRDTAYFD 401
+L+I ++ D Y + V ++T + PK ++ ++ +
Sbjct: 70 NA---SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS--NNSKPVE 124
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
+ V W+ +N+ + + R LT+ + + DTA Y+
Sbjct: 125 DKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKC 181
Query: 462 VAENDLGMD-SAIVKIQISDRPDPPQFP 488
+N + S V + + PD P
Sbjct: 182 ETQNPVSARRSDSVILNVLYGPDAPTIS 209
Score = 43.4 bits (102), Expect = 2e-04
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
N+ + + D Q NG+ + R + + + + + +
Sbjct: 473 SNNSKPVEDKDAVAFTCE-PEAQNTTYLWWVNGQSLPVSPRLQL-SNGNRTLT-LFNVTR 529
Query: 61 EDAGDYTVNLSNSSGSV-SGTFTINITGLP-GPPIGPLDVSEITKHTCTLH 109
DA Y + NS + S T+++ P P I P D S ++ L
Sbjct: 530 NDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLS 580
Score = 41.1 bits (96), Expect = 9e-04
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 17/106 (16%)
Query: 402 KGENVVVKIPFTGYPKPKITWYRD----------------NEVIESGGHFHVETSERHAI 445
+G+ V++ + +WY+ + + E +A
Sbjct: 13 EGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNAS 72
Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
L I++ DT Y + + + Q P+ P+
Sbjct: 73 LLIQNIIQNDTGFYTLHVIKSDLV-NEEATGQFRVYPELPKPSISS 117
Score = 38.8 bits (90), Expect = 0.005
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 8/100 (8%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS-VS 78
Q N + + R + + + + + + + D Y N + S
Sbjct: 135 PETQDATYLWWVNNQSLPVSPRLQ--LSNGNRTLTLFNVTRNDTASYKCETQNPVSARRS 192
Query: 79 GTFTINITGLPGPPIGPLDVSEITKH-----TCTLHWNPP 113
+ +N+ P P + +C NPP
Sbjct: 193 DSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPP 232
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 116 bits (291), Expect = 4e-30
Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 18/197 (9%)
Query: 83 INITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT 142
IN P L+VS+ T+ T +L W P Y + S +
Sbjct: 1 INAGTDLDNPKD-LEVSDPTETTLSLRWRRPVAK----FDRYRLTYVSPSGKKNE-MEIP 54
Query: 143 CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVG 202
T+FI++GL G EY ++A P P + +
Sbjct: 55 VDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTI-------KGSTVVGSPKGISFSDIT 107
Query: 203 GDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEF 262
+ +SW P SR+ Y + + V V + ++ + L+ G Y
Sbjct: 108 ENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDG-SKTRTKLVKLVPGVDYNV 162
Query: 263 RVYAQNEAGLSLPSSAS 279
+ + S P S
Sbjct: 163 NIISVKGFEESEPISGI 179
Score = 76.7 bits (189), Expect = 2e-16
Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 26/170 (15%)
Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEN 465
F Y ++T+ + + IL +VAE
Sbjct: 33 KFDRY---RLTYVSPSGKKNE---MEIPVDSTSFILR-------GLDAGTEYTISLVAEK 79
Query: 466 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
S I+ S P+ + DI +S + W P S + +Y V
Sbjct: 80 GRH-KSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITG 134
Query: 526 SSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ V + T + L PG Y + + + S+P + + T
Sbjct: 135 GTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGI--LKT 182
Score = 73.6 bits (181), Expect = 3e-15
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 476 IQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTR 535
I D P+ V D +L+L WR P+ + Y +
Sbjct: 1 INAGTDLDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIPVD 56
Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
T+ + GL G +Y + AE +S P+T
Sbjct: 57 STSFILRGLDAGTEYTISLVAEKGRHKSKPTTIK 90
Score = 64.8 bits (158), Expect = 3e-12
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 65 DYTVNL-SNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
+YT++L + S TI + + G P + S+IT+++ T+ W PP+ V
Sbjct: 70 EYTISLVAEKGRHKSKPTTIKGSTVVGSP-KGISFSDITENSATVSWTPPRSR----VDS 124
Query: 124 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
Y V I+ ++ T + L G +Y ++++V P+ GI
Sbjct: 125 YRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGI 179
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 114 bits (288), Expect = 7e-30
Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 19/193 (9%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY--T 349
+++ Q + C++ G +P I W+K + + +I +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 350 LIINSVYGVDADEYVCRAVNKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
L + SV DA Y C+ + G + S L + P F V P +D A +
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEP--KDLAV-PPNAPFQL 118
Query: 409 KIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDL 467
G P+P I W+R I + ++L + + + + A N
Sbjct: 119 SCEAVGPPEPVTIVWWRGTTKIG-------GPAPSPSVLNVTGVT--QSTMFSCEAHNLK 169
Query: 468 GMD---SAIVKIQ 477
G+ +A V +Q
Sbjct: 170 GLASSRTATVHLQ 182
Score = 40.6 bits (95), Expect = 4e-04
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF--IKEIR 59
P L + +G K+ G + ++ K+G VVQ+ D+ V + + I F +K +
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 68
Query: 60 KEDAGDYTVNLSNSSGS-VSGTFTINITGLP 89
+ DAG Y + + + +S + + G+P
Sbjct: 69 RSDAGRYWCQVEDGGETEISQPVWLTVEGVP 99
Score = 33.6 bits (77), Expect = 0.10
Identities = 6/64 (9%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 23 QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTF 81
+P+ + + + ++ + + ++ N G S T
Sbjct: 127 EPVTIVWWRGTTKIGGPA-------PSPSVLNV--TGVTQSTMFSCEAHNLKGLASSRTA 177
Query: 82 TINI 85
T+++
Sbjct: 178 TVHL 181
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 112 bits (283), Expect = 9e-30
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
S + D P+PP + D S+ L W D S IT +I+E + +
Sbjct: 5 SSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGD-DNNSPITKFIIEYEDAMHKPGL 63
Query: 530 RVGNTRF---TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
T T A LSP Y FRV A N G+S PS S+ T
Sbjct: 64 WHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT 111
Score = 103 bits (258), Expect = 2e-26
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 4/127 (3%)
Query: 74 SGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM 133
S SG + +P PP L++++ + L W P D +T +++E D
Sbjct: 2 SSGSSGPTPAPVYDVPNPP-FDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMH 59
Query: 134 P--HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
W + T L+ Y F VMAVN G P E K+ +
Sbjct: 60 KPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKN 119
Query: 192 PPGIPVV 198
P P
Sbjct: 120 PTSGPSS 126
Score = 98.2 bits (245), Expect = 1e-24
Identities = 35/109 (32%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
YD P+PP +T V LSW P DD S I + I+ + + +
Sbjct: 13 VYDVPNPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS 71
Query: 246 PSQIN-IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAP 293
+Q NL Y FRV A N G SLPS AS K K P
Sbjct: 72 GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 120 bits (303), Expect = 9e-30
Identities = 31/229 (13%), Positives = 56/229 (24%), Gaps = 24/229 (10%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GC 319
+ R A+NE G + I L +C
Sbjct: 205 DIRCCARNELG----RECTRLFTIDLN-----QTPQTTLPQLFLKVGEPLWIRCKAVHVN 255
Query: 320 PKPTISWLKGSREITPSARHHIFAEGDTY------TLIINSVYGVDADEYVCRAVNKGGV 373
++W ++ + + ++SV D Y C +
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS- 314
Query: 374 KSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG 433
A + I+ N D D+ E + F YP+ + TW +
Sbjct: 315 --QSALVTIVEKGFINATNSSEDYEI-DQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ 371
Query: 434 HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
++ Y AEND + + + I
Sbjct: 372 KGLDNGYS----ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
Score = 112 bits (280), Expect = 1e-26
Identities = 35/309 (11%), Positives = 94/309 (30%), Gaps = 21/309 (6%)
Query: 266 AQNEAGLSLPSS----ASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321
N++ + SS + + + + ++ + + + Q +
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGN 77
Query: 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 381
+ W+ + + G +++I + A EY+ ++ + +
Sbjct: 78 ISCLWVFKHSSLNCQPHFDLQNRGVV-SMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
I + + + + P+P + W + ES +
Sbjct: 137 IRNTLLYTLRRPYFRKM----ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVK 192
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFPTVEDIGHDSLAL 500
+ + + D R A N+LG + + + I ++ P +G + L +
Sbjct: 193 KE-EKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVG-EPLWI 247
Query: 501 VWRAPIWDGGSNIT----NYIVEKREHPMSSWIRVGNT--RFTTMAITGLSPGHQYEFRV 554
+A + G +T N +E+ + S T R ++ ++ +
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 555 YAENVYGRS 563
+ +S
Sbjct: 308 SSSKHPSQS 316
Score = 102 bits (256), Expect = 1e-23
Identities = 41/400 (10%), Positives = 105/400 (26%), Gaps = 49/400 (12%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
A+ + + +++ + + F + + I ++ +
Sbjct: 55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV-VSMVILKMTET 113
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHT---CTLHWNP-PKYDG 117
AG+Y + + + + + + FT++I + ++ C P P
Sbjct: 114 QAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIV-- 171
Query: 118 GLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP---P 174
+V+ + + + + G + A NE G
Sbjct: 172 -----EWVLCDSQGESCKEESPAVVKKEEKVLHE--LFGTDI--RCCARNELGRECTRLF 222
Query: 175 LEGINPIKAKSPYDKPSPPGIPVV---TQVGGDF-VNLSWDKPLDDGGSRIQGYWIDKHE 230
+N + G P+ V + L+W+ + + +G + +
Sbjct: 223 TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL---ENKALEEGNYFEMST 279
Query: 231 VGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
++ + ++ + + S V I +
Sbjct: 280 YSTNRTMIRI------LFAFVSSVARNDTGYYTCSSSKHPS------QSALVTIVEK--- 324
Query: 291 KAPEIIVPLRNAN--AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
I + + Q F P+ +W + + + Y
Sbjct: 325 --GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGY 378
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 388
++ + EY+ A N + L I + K
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH 418
Score = 45.8 bits (108), Expect = 2e-05
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
I + + + + + + T + + + + LD+ I K
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG----LDNGYSISKFCNHK 387
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLP 89
G+Y + N + FT+NI
Sbjct: 388 HQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 111 bits (280), Expect = 1e-29
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFT 537
S P P P + G L+L W P +YI+E E + +
Sbjct: 5 SSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL 64
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ L +Y+F+V A N G+S+PS + T
Sbjct: 65 AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC 101
Score = 110 bits (276), Expect = 6e-29
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 4/108 (3%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
P P +++ +L W+ P + Y++E + + + D
Sbjct: 6 SGPSMP-ASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL 64
Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
+ V+ L +Y F V+A N G P E + D G
Sbjct: 65 AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCP---DSGPSSG 109
Score = 108 bits (272), Expect = 2e-28
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 1/110 (0%)
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
S PS P PV+T+ G +++L W KP Y ++ E S +
Sbjct: 1 GSSGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD 60
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKA 292
+ + NL +Y+F+V A N G S PS D +
Sbjct: 61 GEDLA-YTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSSG 109
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 115 bits (290), Expect = 2e-29
Identities = 47/225 (20%), Positives = 71/225 (31%), Gaps = 25/225 (11%)
Query: 290 AKAPEIIVPLRNANAIQ----NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA-E 344
AP P R + + +F+C G P P+ISWLK RE R
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 68
Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD-----TAY 399
++L++ SV D Y C NK G L ++ P TA
Sbjct: 69 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-RPILQAGLPANQTAV 127
Query: 400 FDKGENVVVKIPFTGYPKPKITWYRDNEV------------IESGGHFHVETSERHAILT 447
G +V +P I W + EV + + E+ E L
Sbjct: 128 L--GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185
Query: 448 IRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
+ + S D Y A N +G+ + + + D
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEAD 230
Score = 79.2 bits (195), Expect = 7e-17
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 15/139 (10%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
+N+ G + ++ + + + N A+ + +F C + +P I
Sbjct: 91 VENKFGSI---RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ 147
Query: 326 WLK------------GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV 373
WLK G+ +T + L + +V D EY+CRA N GV
Sbjct: 148 WLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV 207
Query: 374 KSTKAELIIMTAPKFNVPP 392
L +
Sbjct: 208 AEKAFWLSVHGPRAAEEEL 226
Score = 44.5 bits (105), Expect = 4e-05
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRK 60
L +P + + + AG+ +S KNGR + + R + + ++ +
Sbjct: 22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP 81
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITG-LPGPPI 93
D G+YT + N GS+ T+T+++ P PI
Sbjct: 82 SDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 115
Score = 42.2 bits (99), Expect = 2e-04
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 31 KNGRVVQSDDRFKFTVLDDYIIIF--------IKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
NG V D TVL +I + + + D G+Y +N G F
Sbjct: 154 VNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFW 213
Query: 83 INITGLPGPPIGPLDVSE---ITKHTC 106
+++ G ++ E + H
Sbjct: 214 LSVHGPRAAEEELVEADEAGSVHHHHH 240
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 114 bits (288), Expect = 2e-29
Identities = 50/209 (23%), Positives = 73/209 (34%), Gaps = 17/209 (8%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT-----PSARHHIFAEGD 346
P I+ + + A C G P PTI W KG + P + + G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 347 TYTLIINSVYGVDADE--YVCRAVNKGG-VKSTKAELIIMT-APKFNVPPRFRDTAYFDK 402
+ L I DE YVC A N G S A L + F P
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS---DVMVAV 125
Query: 403 GENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
GE V++ P G+P+P I+W +D ++ T L I D Y
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI--TIRGGK-LMITYTRKSDAGKYVC 182
Query: 462 VAENDLGMD-SAIVKIQISDRPDPPQFPT 489
V N +G S + ++ + +RP +
Sbjct: 183 VGTNMVGERESEVAELTVLERPSFVKAAA 211
Score = 91.0 bits (226), Expect = 4e-21
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (8%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTI 324
A+N G ++ S S+++ A + + A +C G P+PTI
Sbjct: 91 ARNYLGEAV--SHDASLEV----AILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTI 144
Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIM 383
SW K + G L+I DA +YVC N G +S AEL ++
Sbjct: 145 SWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201
Query: 384 TAPKFNVPP 392
P F
Sbjct: 202 ERPSFVKAA 210
Score = 35.2 bits (81), Expect = 0.035
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77
G +S K+G + D T+ ++I RK DAG Y +N G
Sbjct: 138 GHPEPTISWKKDGSPLDDKDER-ITIRGGKLMI--TYTRKSDAGKYVCVGTNMVGER 191
Score = 32.1 bits (73), Expect = 0.40
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 21 GDQPMEVSLTKNGRVVQSDD---RFKFTVLDD----YIIIFIKEIRKEDAGDYTVNLSNS 73
G + K G V++D R +L ++ I + D G Y N
Sbjct: 35 GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNY 94
Query: 74 SG-SVSGTFTINITGLPGPPI--GPLDVSEITKHTCTLHWNPPK 114
G +VS ++ + L P DV + PP+
Sbjct: 95 LGEAVSHDASLEVAILR-DDFRQNPSDVMVAVGEPAVMECQPPR 137
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 114 bits (287), Expect = 2e-29
Identities = 40/217 (18%), Positives = 68/217 (31%), Gaps = 19/217 (8%)
Query: 64 GDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
G + +SSG V +P P L +IT + L W P +
Sbjct: 2 GSSHHHHHHSSGLVPRGSH---MEVPQPTD--LSFVDITDSSIGLRWTPL---NSSTIIG 53
Query: 124 YVVERRDISMPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
Y + I + V GL G +Y V V G P +
Sbjct: 54 YRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTT----LT 109
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
++ PP T +G D + ++W P + + + V ++
Sbjct: 110 QQTA---VPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSI 163
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ + + + NL+ G +Y V + E S P
Sbjct: 164 SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 200
Score = 78.3 bits (193), Expect = 9e-17
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 6/112 (5%)
Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE 519
V + G +S + PP +IG D++ + W P ++TN++V
Sbjct: 93 SVYTVKNGG-ESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVR 148
Query: 520 KREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+ + + +T L PG +Y V + S P
Sbjct: 149 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 200
Score = 74.9 bits (184), Expect = 1e-15
Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 471 SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR 530
S +V P + DI S+ L W S I Y + I
Sbjct: 12 SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIF 68
Query: 531 VG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
++ +TGL PG Y+ VY G S P+T +
Sbjct: 69 EDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLT 109
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 114 bits (288), Expect = 2e-29
Identities = 43/225 (19%), Positives = 73/225 (32%), Gaps = 32/225 (14%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
S+ + + + +I V + + + C TG P W K ++EI
Sbjct: 2 GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP- 60
Query: 336 SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKF------ 388
G+T LI N+V+ DA YVCR N S ++L + P+
Sbjct: 61 --------NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112
Query: 389 ---NVPPRFRDT---AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
+ G +V++ G P P W+++ + T E
Sbjct: 113 GVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THET 163
Query: 443 HAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQ 486
+ + Y ND DS V+I I + +
Sbjct: 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGH 208
Score = 81.5 bits (201), Expect = 9e-18
Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 18/136 (13%)
Query: 266 AQNEAGLSLPSSASNSVQ--------IKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT 317
N + V D ++ +I V + + QC
Sbjct: 84 VNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAV 143
Query: 318 GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKST 376
G P P W K +T + ++ V Y C N S
Sbjct: 144 GSPIPHYQWFKNELPLTHETKK---------LYMVPYVDLEHQGTYWCHVYNDRDSQDSK 194
Query: 377 KAELIIMTAPKFNVPP 392
K E+II P
Sbjct: 195 KVEIIIDELNNLGHPD 210
Score = 39.5 bits (92), Expect = 0.002
Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 9/102 (8%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P + + G ++ G KN + + + + + + E
Sbjct: 125 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYM---------VPYVDLE 175
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITK 103
G Y ++ N S I P + + T
Sbjct: 176 HQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTD 217
Score = 36.4 bits (84), Expect = 0.015
Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P + + G K+ G ++ K + + + + + + +
Sbjct: 25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELI---------FNAVHVK 75
Query: 62 DAGDYTVNLSNSSGS-VSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
DAG Y ++N+ S +++ +P +D +K +
Sbjct: 76 DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVE 124
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 117 bits (295), Expect = 6e-29
Identities = 43/218 (19%), Positives = 71/218 (32%), Gaps = 15/218 (6%)
Query: 65 DYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHY 124
DY +++ T PP L + I T + W PP + +T++
Sbjct: 162 DYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNF 218
Query: 125 VVE-RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA 183
+V + +S + D ++ L G EY+ V +V E PL G
Sbjct: 219 LVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG------ 272
Query: 184 KSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI 243
P + + + + W P + I GY I H R +
Sbjct: 273 -RQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVP 327
Query: 244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
+ + I + NL G +Y + A N S S
Sbjct: 328 HSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365
Score = 113 bits (284), Expect = 2e-27
Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 19/215 (8%)
Query: 66 YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYV 125
YTV S +S T +P L +IT + L W P + + Y
Sbjct: 77 YTVKDDKESVPISDTII---PEVPQLT--DLSFVDITDSSIGLRWTPL--NSS-TIIGYR 128
Query: 126 VERRDISMPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
+ I + V GL G +Y V+ + G P
Sbjct: 129 ITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL------- 181
Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
+ PP T +G D + ++W P + + + V ++
Sbjct: 182 TQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISP 238
Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ + + + NL+ G +Y V + E S P
Sbjct: 239 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 273
Score = 105 bits (264), Expect = 8e-25
Identities = 64/413 (15%), Positives = 115/413 (27%), Gaps = 85/413 (20%)
Query: 190 PSPPGIPVVTQVGG-DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS- 247
SPP + + +SW++ I GY I + + A
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
NL G +Y VY + S P++ + L + + +
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVKDDKES------------VPISDTIIPEVPQLTDLSFVDI 107
Query: 308 HNAQFQCTITGCPKPTISWLKGSREI------------TPSARHHIFAEGDTYTLII--- 352
++ + W + F + +
Sbjct: 108 TDSSI----------GLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGL 157
Query: 353 --NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV-- 408
Y + V + GG +S L TA PP D + + G + +
Sbjct: 158 EPGIDYDI----SV-ITLINGG-ESAPTTLTQQTAVP---PPT--DLRFTNIGPDTMRVT 206
Query: 409 -----KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY---- 459
I T + + Y + E + S+ +LT + P
Sbjct: 207 WAPPPSIDLTNF----LVRYSPVKNEEDVAELSISPSDNAVVLT-------NLLPGTEYV 255
Query: 460 -RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
V + + +S ++ + D P DI +S + W AP + IT Y +
Sbjct: 256 VSVSSVYEQH-ESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGYRI 310
Query: 519 EKREHPMSSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
S R ++ +T L+PG +Y + A N S
Sbjct: 311 RHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ 363
Score = 103 bits (258), Expect = 5e-24
Identities = 30/198 (15%), Positives = 53/198 (26%), Gaps = 16/198 (8%)
Query: 88 LPGPPIGPLDVSEITKHTC-TLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD- 145
+P P L + T+ W +T Y + + + H
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHAD 57
Query: 146 -TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGD 204
++ L+ G EY V V ++ P+ + +
Sbjct: 58 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDT-------IIPEVPQLTDLSFVDITDS 110
Query: 205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
+ L W S I GY I G + + + L G Y+ V
Sbjct: 111 SIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISV 167
Query: 265 YAQNEAGLSLPSSASNSV 282
G S P++ +
Sbjct: 168 ITLINGGESAPTTLTQQT 185
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 109 bits (274), Expect = 6e-29
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDT 347
+ +AP+I +++ Q +A F+ + G P P W K +I S R + + E +
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
L+I V G D+ + +A+N G S+ A L++
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 76.5 bits (189), Expect = 3e-17
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
M APK + + +G + ++ G P P+ WY++ IE + E
Sbjct: 3 MEAPKIFERIQSQTVG---QGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED 59
Query: 443 H-AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
+ L IRD + D+A V A N G S+ + + +
Sbjct: 60 NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 44.2 bits (105), Expect = 6e-06
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIII-FIKEIRKEDAGD 65
+ +G + ++ G E KNG ++ DR + +D + I+++ ED+
Sbjct: 17 VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS 76
Query: 66 YTVNLSNSSGSVSGTFTINITG 87
V N +G S + +
Sbjct: 77 IMVKAINIAGETSSHAFLLVQA 98
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 109 bits (274), Expect = 1e-28
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 479 SDRPDPPQFPTVED-IGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT 537
S P P P ++ + L W P+ DGGS I+ Y VE V
Sbjct: 6 SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEV 65
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
++ L PG Y FR+ A N G S D+ T
Sbjct: 66 ECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102
Score = 105 bits (263), Expect = 3e-27
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
+G PGP + P L W PP DGG ++ Y VE I + +
Sbjct: 6 SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV-YQGSE 64
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
V L G+ Y F + A N+ G GP E + A P PS
Sbjct: 65 VECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA--PGSGPSS 109
Score = 92.4 bits (230), Expect = 9e-23
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 190 PSPPGIP-VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
P P P + + + L W PL DGGS I Y ++ + D + V + +
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVE 66
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
+ +L+ G+ Y FR+ A N+ G S +
Sbjct: 67 CTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDIT 100
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 116 bits (291), Expect = 1e-28
Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 15/197 (7%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
P + V + NA+ + +C + G W+ E + + +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLG-LTLA 217
Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF 412
N ++ C A N G ++ + P + + +
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNV-------SFPASVQLHTAVEMHHWCIPFSV 270
Query: 413 TGYPKPKITWYRDNEVIESGGHFHVE-------TSERHAILTIRDASNVDTAPYRVVAEN 465
G P P + W + V+ E + RH L + ++V+ Y ++A N
Sbjct: 271 DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330
Query: 466 DLGMDSAIVKIQISDRP 482
G SA + D P
Sbjct: 331 PFGQASASIMAAFMDNP 347
Score = 69.0 bits (168), Expect = 9e-13
Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 19/128 (14%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
A+N+ G + S V + P ++ A++ H+ ++ G P P++
Sbjct: 232 AENDVG---RAEVSVQVNVSFPA---------SVQLHTAVEMHHWCIPFSVDGQPAPSLR 279
Query: 326 WLKGSREITPSARHHIFAEGDTY-------TLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
WL + ++ L +N V+ Y A N G S
Sbjct: 280 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 339
Query: 379 ELIIMTAP 386
M P
Sbjct: 340 MAAFMDNP 347
Score = 42.8 bits (100), Expect = 2e-04
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYII-------IFIKEIRKEDAGDYTVNLSNSSGSVS 78
+ NG V+ L+ + + + + G+YT+ +N G S
Sbjct: 277 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 336
Query: 79 GTFTINITGLP 89
+ P
Sbjct: 337 ASIMAAFMDNP 347
Score = 42.4 bits (99), Expect = 3e-04
Identities = 10/112 (8%), Positives = 26/112 (23%), Gaps = 1/112 (0%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+ GD+ ++ G + + K L +
Sbjct: 165 VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVTSDL 223
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP 113
+ + T N G + +N++ + ++ P
Sbjct: 224 NRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPA 275
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 108 bits (272), Expect = 1e-28
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 349
+ P I+ L++ + A+F TG P+PT W K + IT ++ + + +
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
L I+ D+ Y C N G S+ +L I
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 74.6 bits (184), Expect = 1e-16
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
I + P + DT + TG P+P W +D + I GG + + +
Sbjct: 3 ISSKPVIVTGLQ--DTTVSS-DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK 59
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSA 472
L I D+ Y +N G S+
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90
Score = 50.4 bits (121), Expect = 4e-08
Identities = 18/87 (20%), Positives = 35/87 (40%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+ K + G+ TK+G+ + ++K + + I +
Sbjct: 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGL 88
D+G YT + NS+GSVS + + I +
Sbjct: 73 DSGLYTCTVKNSAGSVSSSCKLTIKAI 99
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 108 bits (273), Expect = 1e-28
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS-W 528
+ P+ P PT+ S+ + W +GG I ++ VE ++ W
Sbjct: 6 SGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDW 64
Query: 529 IRVGNT---RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
I + ++ ITGL G Y+FRV A N+ G S+PS S
Sbjct: 65 ILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV 113
Score = 104 bits (261), Expect = 7e-27
Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
G P P P ++ V ++W P +GG IQ + ++
Sbjct: 1 GSSGSSG---SQPDHGRLSPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYK 56
Query: 230 EV-GSDAWQRVNVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
++ W AI + I L +G Y+FRV A N G S PS+ S +
Sbjct: 57 KLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Score = 98.2 bits (245), Expect = 1e-24
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 7/123 (5%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
SSGS P P +S ++ + + W P +GG + + VE + +
Sbjct: 2 SSGSSGSQPDHGRLSPPEAP-DRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLK 59
Query: 133 MP-HWICISTT--CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDK 189
WI ++ + + GL +G Y F V A+N G P P
Sbjct: 60 KVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS--G 117
Query: 190 PSP 192
PS
Sbjct: 118 PSS 120
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 111 bits (280), Expect = 2e-28
Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 13/198 (6%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPP---KYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
PP+G + S ++ T + W K+ +Y V + + +
Sbjct: 5 MMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPV---VTQVG 202
+++V GL Y F VM + P+ P V +
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM---TAHGTTFELVPTSPPKDVTVVSKEGK 120
Query: 203 GDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ--INIPNLIEGRQY 260
+ ++W P + G +I GY I + + ++ I L Y
Sbjct: 121 PKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPY 179
Query: 261 EFRVYAQNEAGLSLPSSA 278
F++ A+N G+ S A
Sbjct: 180 YFKIQARNSKGMGPMSEA 197
Score = 64.1 bits (156), Expect = 7e-12
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 479 SDRPD-PPQFPTVEDIGHDSLALVWRAP---IWDGGSNITNYIVEKREHPMSSW-IRVGN 533
+D P PP + HD++ + W ++ Y V + + ++ + N
Sbjct: 1 ADLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN 60
Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
+ +TGL P YEF V S S T+ T
Sbjct: 61 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT 100
Score = 58.7 bits (142), Expect = 5e-10
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 87 GLPGPPIGPLDVS--EITKHTCTLHWNPPKYDGGLKVTHYVVERR---DISMPHWICIST 141
+P P + V E T ++W PP G K+T Y++ + + W+
Sbjct: 103 LVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPV 161
Query: 142 TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKP 190
+ T +Q LT Y F + A N GMGP E + K+ +
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHHHH 210
Score = 56.7 bits (137), Expect = 2e-09
Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 28/178 (15%)
Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEN 465
Y + W + + + + + ++T P V+
Sbjct: 38 DSRYY---TVRWKTNIP--ANTKYKNANATTLSYLVT-------GLKPNTLYEFSVMVTK 85
Query: 466 DLG--MDSAIVKIQ-ISDRP-DPPQFPTVE--DIGHDSLALVWRAPIWDGGSNITNYIVE 519
S P PP+ TV + ++ + W+ P G IT YI+
Sbjct: 86 GRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIY 144
Query: 520 KREHPMSSW----IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
+ I T I L+ Y F++ A N G S T
Sbjct: 145 YSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 202
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 107 bits (270), Expect = 3e-28
Identities = 21/92 (22%), Positives = 33/92 (35%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
AP I + +R+ N +F + P + W E+ S++ H TL
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
I + D+ Y N G S A L +
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 75.0 bits (185), Expect = 8e-17
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
+ AP+ + R G+N + P ++ WY + ++ H +
Sbjct: 5 LDHAPRITLRMRSHRVP---CGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKIQISD 480
L I D D+ YR V N G A + + D
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
Score = 56.5 bits (137), Expect = 3e-10
Identities = 20/81 (24%), Positives = 35/81 (43%)
Query: 7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 66
+P G NT+ + EV NG +Q + +T + + I + +D+G Y
Sbjct: 20 VPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTY 79
Query: 67 TVNLSNSSGSVSGTFTINITG 87
+N G S T+++TG
Sbjct: 80 RAVCTNYKGEASDYATLDVTG 100
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 111 bits (278), Expect = 3e-28
Identities = 35/208 (16%), Positives = 60/208 (28%), Gaps = 21/208 (10%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
A + + +N+ + C +G P + W + T ++
Sbjct: 1 AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60
Query: 349 --------TLIINSVYGVDADEYVCRAVNKGG--VKSTKAELIIMTAPKFNVPPRFRDTA 398
+ SV D Y C +GG K +LI++ P
Sbjct: 61 DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120
Query: 399 YFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-------LTIRD 450
G V+ G P + TW++D V+ + S + L
Sbjct: 121 I---GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177
Query: 451 ASNVDTAPYRVVAENDLGMDSAIVKIQI 478
S DT Y A N G +++
Sbjct: 178 LSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 39.6 bits (92), Expect = 0.001
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIII-------FIKEIRKEDAGDYTVNLSN 72
G P E + K+G V+ ++ + + ++ + D G+Y+ N
Sbjct: 133 DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN 192
Query: 73 SSGSVSGTFTINITGL 88
G+ + + + +
Sbjct: 193 GYGTPMTSNAVRMEAV 208
Score = 38.4 bits (89), Expect = 0.003
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 10/118 (8%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYII--------I 53
+ IPE + K+ Y+G V + + + Y I
Sbjct: 11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGI 70
Query: 54 FIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGP--PIGPLDVSEITKHTCTLH 109
K + +ED G YT +S G+ G + + L P P + S + L
Sbjct: 71 TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLT 128
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 107 bits (270), Expect = 3e-28
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
A I+ R+ + +A+F C G P PT++WL+ + ++ SARH + T
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELII 382
I+SV D Y N G + + L I
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 76.6 bits (189), Expect = 3e-17
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 368 VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
++ S+K L A + PR + +GE+ G P P +TW R +
Sbjct: 1 MHHHHHHSSKTTL----AARILTKPR---SMTVYEGESARFSCDTDGEPVPTVTWLRKGQ 53
Query: 428 VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
V+ + V T++ + I D Y VV EN G A + I
Sbjct: 54 VLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 52.7 bits (127), Expect = 6e-09
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
V+ + G+V+ + R + T I ++ D G+Y+V + NS G FT+ I
Sbjct: 45 TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 107 bits (269), Expect = 6e-28
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
I PK +P R T GE + + +PF G P+P++ W + +++ HV TS+
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSD 76
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
+ +R A+ D+ Y + + + D+A ++I++ ++
Sbjct: 77 FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 79.0 bits (195), Expect = 7e-18
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 6/119 (5%)
Query: 271 GLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI---QNHNAQFQCTITGCPKPTISWL 327
+ + V I++ P+I +P G P+P + W
Sbjct: 2 SSGSSGTLAQPVTIREIAEP--PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWT 59
Query: 328 KGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
KG + S R H+ + D+ EY + + + ++
Sbjct: 60 KGGAPLDTS-RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 67.4 bits (165), Expect = 7e-14
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
+ G+ + + + G +V TK G + + R D + F+++ +
Sbjct: 30 LRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRTSDFDTVFFVRQAAR 88
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPG 90
D+G+Y +++ + + T I + G
Sbjct: 89 SDSGEYELSVQIENMKDTATIRIRVVEKAG 118
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 107 bits (268), Expect = 6e-28
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR-VGNTRFT 537
S P PP V + S+ L W + +T Y ++ R + V T
Sbjct: 5 SSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+I GLSP +Y FRV A N GR PS T
Sbjct: 62 RYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG 98
Score = 93.1 bits (232), Expect = 4e-23
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
+ P PP L V+E T + TL W+ VT+Y ++ R
Sbjct: 5 SSGPKPP-IDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVAT 60
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
T + + GL+ EY F V+AVN G GPP E + + S P
Sbjct: 61 TRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG-----EQSGP 103
Score = 85.4 bits (212), Expect = 3e-20
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 184 KSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI 243
S P PP VVT+ V L+WD + Y I G++ + V
Sbjct: 2 SSGSSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQ-EVDG 57
Query: 244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
A ++ +I L +Y FRV A N G PS A + +
Sbjct: 58 VATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQS 101
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 106 bits (266), Expect = 1e-27
Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
G ++ P P V + +G + +SW +P + +QGY ++
Sbjct: 1 GSSGSSG---SHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQ 55
Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV--QIKDP 287
+ R+N+ A + + + +L+ Y FRV AQ++ G ++ Q+ P
Sbjct: 56 LLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGP 115
Query: 288 MAA 290
+
Sbjct: 116 SSG 118
Score = 91.7 bits (228), Expect = 2e-22
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
SSGS + G+P P L S + + + W P+ + + Y VE + ++
Sbjct: 2 SSGSSGSHDSRLTAGVPDTP-TRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLLN 58
Query: 133 MPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
++ T+ +V+ L Y+F V A ++ G G EG+ I++ + S
Sbjct: 59 GGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES-----QVS 113
Query: 192 PPG 194
P
Sbjct: 114 GPS 116
Score = 87.5 bits (217), Expect = 7e-21
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFT 537
PD P +G SL + W+ P + + Y VE + R+ N T
Sbjct: 16 GVPDTPTRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLLNGGELHRLNIPNPAQT 73
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
++ + L P H Y FRV A++ G I +
Sbjct: 74 SVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES 110
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 106 bits (266), Expect = 1e-27
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
+ P+ P GE+V + TG TW + + I+ H VE SE
Sbjct: 6 SGPQIIQFPE---DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG 62
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
+ LTI A Y ++ EN LG A V + + D+PDPP
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
Score = 97.4 bits (243), Expect = 2e-24
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 3/107 (2%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
P+II + + + +TG T +W+K ++I S + + L
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTA 398
I + Y NK G + + L ++ P PP +
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD---PPAGTPSG 110
Score = 79.7 bits (197), Expect = 3e-18
Identities = 21/94 (22%), Positives = 39/94 (41%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P + G++ ++ G QP+ + K + +Q + K ++ + I R+E
Sbjct: 14 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 73
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGP 95
G YT+ + N GS + + P PP G
Sbjct: 74 HCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 106 bits (267), Expect = 1e-27
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 468 GMDSAIVKIQIS---DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP 524
G + I + P PP + +IG S+ L +R +DG ++I+ ++VE +
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGV 59
Query: 525 MS---SWIRVGNT----RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ W+ + +M + L+P Y FR+ N+ G S PS S I T
Sbjct: 60 VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116
Score = 102 bits (257), Expect = 3e-26
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 9/122 (7%)
Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI--- 226
G I + P + P PP ++ +G V L + +P DG + I + +
Sbjct: 1 GSSGSSG---TISSGVPPELPGPPTNLGISNIGPRSVTLQF-RPGYDGKTSISRWLVEAQ 56
Query: 227 DKHEVGSDAWQRVNVAICAPSQIN--IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI 284
+ W ++ P + +P+L Y FR+ N G S PS S +Q
Sbjct: 57 VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116
Query: 285 KD 286
Sbjct: 117 LQ 118
Score = 88.9 bits (221), Expect = 3e-21
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 14/128 (10%)
Query: 74 SGSVSGTFTINI-TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
S SGT + + LPGPP +S I + TL + P YDG ++ ++VE +
Sbjct: 2 SSGSSGTISSGVPPELPGPPTNL-GISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGV 59
Query: 133 MPHWIC------ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
+ +S + V L Y F + VN G PP + I+
Sbjct: 60 VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT--- 116
Query: 187 YDKPSPPG 194
S P
Sbjct: 117 --LQSGPS 122
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 105 bits (265), Expect = 2e-27
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT--Y 348
+AP I ++ ++ + + +C I+ P P + W + + + + + +T
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP 391
TL+I V DA Y AVN+ GV + L + P +P
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 71.7 bits (176), Expect = 2e-15
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-E 430
G AP F P+ + G++V ++ + P PK+ W R+NE++
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQ--SKKVLE-GDSVKLECQISAIPPPKLFWKRNNEMVQF 58
Query: 431 SGGHFHVETSER-HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
+ + L I+D + D Y V A N+ G+ + ++ ++ RP+
Sbjct: 59 NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
Score = 49.7 bits (119), Expect = 1e-07
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAG 64
+ EGD+ K++ + P ++ +N +VQ + D+ + + IK++ K+DAG
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 65 DYTVNLSNSSGSVSGTFTINITGLP 89
YTV+ N +G + +++T P
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDVTARP 111
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 114 bits (287), Expect = 2e-27
Identities = 69/496 (13%), Positives = 141/496 (28%), Gaps = 54/496 (10%)
Query: 105 TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVM 164
C+ W P G +E+R T+ + L+ G Y +
Sbjct: 13 QCS--WKAPSGTGRGTDYEVCIEQRS-------RSCYQLEKTSIKIPALSHGD-YEITIN 62
Query: 165 AVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT-QVGGDFVNLSW--DKPLDDGGSRI 221
++++ G +N ++ P P I ++ + L W + S +
Sbjct: 63 SLHDFGSSTSKFTLNE---QNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNV 119
Query: 222 QGYWIDKHEVGSDAWQRVNVA-------ICAPSQINIPNLIEGRQYEFRVYAQ-NEAGLS 273
+ + + V +E + + + S
Sbjct: 120 IWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFS 179
Query: 274 LPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI 333
S+ +K + V ++ + + F C + I
Sbjct: 180 GLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLI 239
Query: 334 TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
+ I ++ + V + P + P +
Sbjct: 240 HLDGE--------NVAIKIRNI--SVSASSGTNVVFTTEDNIFGTVIFAGYPP--DTPQQ 287
Query: 394 FRDTAYFDKGENVVVKI---PFTGYPKPKITWYRDNEVIESGGHFHVETSERHA----IL 446
+ ++ T P+ T Y E SG + ++ +E L
Sbjct: 288 L--NCETHDLKEIICSWNPGRVTALVGPRATSYTLVES-FSGKYVRLKRAEAPTNESYQL 344
Query: 447 TIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR--PDPPQFPTVEDIGHDSLALVWRA 504
+ N + + + A N LG + + + I+++ P P V+DI ++ L W
Sbjct: 345 LFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHL 404
Query: 505 PIWDGGSNITNYIVEKREHPMSSW----IRVGNTRFTTMAITGLSPGHQYEFRVYA--EN 558
P N I K+ + + I+ +A+ L+P Y FR+ E
Sbjct: 405 PGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTET 464
Query: 559 VYGRSDPSTTSDLITT 574
+ S S +TT
Sbjct: 465 FWKWSKWSNKKQHLTT 480
Score = 78.3 bits (192), Expect = 2e-15
Identities = 50/390 (12%), Positives = 99/390 (25%), Gaps = 47/390 (12%)
Query: 205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
SW P G I++ +Q + I IP L G YE +
Sbjct: 11 VWQCSWKAPSGTGRGTDYEVCIEQRS--RSCYQ------LEKTSIKIPALSHG-DYEITI 61
Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTI 324
+ ++ G S N + PEI L+ + + G P
Sbjct: 62 NSLHDFGSSTSKFTLNEQNVSLIPD--TPEI---LQLSADFSTSTLYLKWNDRGSVFPHR 116
Query: 325 SWLKGSREITPSARHHIFAEGDTYTLI----------INSVYGVDADEYVCR---AVNKG 371
S + ++ + T + S ++ + ++
Sbjct: 117 SNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNL 176
Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAY-----FDKGENVVVKIPFTGYPKPKITWYRDN 426
+ + + P + + G ++ + + +
Sbjct: 177 HFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNC 236
Query: 427 EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
+I + + IR+ S +A + I PD PQ
Sbjct: 237 PLI--------HLDGENVAIKIRNIS--VSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQ 286
Query: 487 FPTVEDIGHDSLALVWRAPIWDG--GSNITNYIVEKR---EHPMSSWIRVGNTRFTTMAI 541
E + W G T+Y + + ++ +
Sbjct: 287 QLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLF 346
Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDL 571
L Y F + A N GRS + ++
Sbjct: 347 QMLPNQEIYNFTLNAHNPLGRSQSTILVNI 376
Score = 49.1 bits (116), Expect = 3e-06
Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 6/123 (4%)
Query: 53 IFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT--GLPGPPIGPLDVSEITKHTCTLHW 110
+ + + ++ ++T+N N G T +NIT P P V +I L W
Sbjct: 344 LLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTS-FKVKDINSTAVKLSW 402
Query: 111 NPPKYDGGLKVTHYVVERRDISMPHWICISTTC---HDTTFIVQGLTEGQEYLFHVMAVN 167
+ P + + ++ S+ ++ + L Y F +
Sbjct: 403 HLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCST 462
Query: 168 ENG 170
E
Sbjct: 463 ETF 465
Score = 35.2 bits (80), Expect = 0.059
Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 22/170 (12%)
Query: 57 EIRKEDAGDY--TVNLSNSSGSVSGTFTIN---ITGLPGPPIGPLDVSEITKHTCTLHWN 111
+I GDY T+N + GS + FT+N ++ +P P ++ + T L WN
Sbjct: 48 KIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWN 107
Query: 112 PPK--YDGGLKVTHYVVERRDISMPHWICIST---------TCHDTTFIVQGLTEGQEYL 160
+ V + ++ + + T T H ++ E +
Sbjct: 108 DRGSVFPHRSNVI-WEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHF 166
Query: 161 FHVMAVNENGMGPPLEGIN---PIKAKSPYDKPSPPGIP--VVTQVGGDF 205
+ +N LE + P+K S P V VG D
Sbjct: 167 VEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDI 216
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 110 bits (277), Expect = 3e-27
Identities = 46/221 (20%), Positives = 76/221 (34%), Gaps = 14/221 (6%)
Query: 65 DYTVNLS--NSSGSVSGTFTINITGLPGPPIGPLDV--SEITKHTCTLHWNPPKYD-GGL 119
Y L+ N G S + I P+ + + + W P+
Sbjct: 73 RYLATLTVRNLVGK-SDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKY 131
Query: 120 KVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
+ V+ + + W T H T++ L E + YL V V +G G P
Sbjct: 132 ILEWCVLSDKAPCITDWQQEDGTVH-RTYLRGNLAESKCYLITVTPVYADGPGSP----E 186
Query: 180 PIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDK-PLDDGGSRIQGYWIDKHEVGSDAWQR 238
IKA PS +VG + L WD+ P+D I+ Y I + +
Sbjct: 187 SIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN-ETA 245
Query: 239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
VNV + ++ + +L Y R+ A + G +
Sbjct: 246 VNVDS-SHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 285
Score = 91.4 bits (227), Expect = 1e-20
Identities = 33/229 (14%), Positives = 61/229 (26%), Gaps = 30/229 (13%)
Query: 91 PPIGPLDV-------SEITKHTCTLHWNP-PKYDGGLKVTHYVVERRDISMPHWICISTT 142
P T L W P ++ K+ Y V + T
Sbjct: 3 RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ---NYT 59
Query: 143 CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVG 202
+ T V YL + N G + + + + P + +
Sbjct: 60 VNATKLTV--NLTNDRYLATLTVRNLVGKSDA----AVLTIPACDFQATHPVMDLKAFPK 113
Query: 203 GDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-----WQRVNVAICAPSQINIPNLIEG 257
+ + + W P + ++ Y ++ + A WQ+ + + NL E
Sbjct: 114 DNMLWVEWTTPRES----VKKYILEWCVLSDKAPCITDWQQEDGTV--HRTYLRGNLAES 167
Query: 258 RQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 306
+ Y V G P S ++ P P + N
Sbjct: 168 KCYLITVTPVYADGPGSPESIKAYLKQAPPSK--GPTVRTKKVGKNEAV 214
Score = 66.8 bits (163), Expect = 2e-12
Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 11/118 (9%)
Query: 459 YRVVAENDLGM--DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNY 516
+ N +G + + + P + L + W P ++ Y
Sbjct: 76 ATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPR----ESVKKY 131
Query: 517 IVEKREHPMS-----SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
I+E W + T T L+ Y V G P +
Sbjct: 132 ILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK 189
Score = 65.6 bits (160), Expect = 7e-12
Identities = 26/170 (15%), Positives = 46/170 (27%), Gaps = 18/170 (10%)
Query: 413 TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAENDL 467
Y + W ++ + E H + A V
Sbjct: 129 KKY---ILEWCVLSDKAPCITDWQQEDGTVHRTYLRGN-----LAESKCYLITVTPVYAD 180
Query: 468 GM-DSAIVKIQIS-DRPDPPQFPTVEDIGHDSLALVWRA-PIWDGGSNITNYIVEKREHP 524
G +K + P + +G + L W P+ I NY + R
Sbjct: 181 GPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII 240
Query: 525 MSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ ++ T ++ L+ Y R+ A G D + TT
Sbjct: 241 GNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT--FTT 288
Score = 54.4 bits (131), Expect = 3e-08
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 480 DRPD-PPQFP----TVEDIGHDSLALVWRA-PIWDGGSNITNYIVEKREHPMSSWIRVGN 533
DRP P F G+ ++ LVW+ P ++ I +Y V N
Sbjct: 2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----N 57
Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+T +Y + N+ G+SD + +
Sbjct: 58 YTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLT 93
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 103 bits (259), Expect = 7e-27
Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-----GNT 534
D P P VE + + + P GG I Y E R W +
Sbjct: 5 DTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 535 RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ I GL P Y R+ A N G + S S+ T
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
Score = 98.6 bits (246), Expect = 5e-25
Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
S D PS P I V + +D+P GG I Y + VG + W
Sbjct: 2 SHMDTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 60
Query: 245 APSQ---INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
S + I L Y R+ A N GL S+AS
Sbjct: 61 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98
Score = 90.1 bits (224), Expect = 5e-22
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC----ISTTC 143
P P E T + ++ P+ GG+ + Y E R + W
Sbjct: 6 TPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
+ + GL Y + A+N G+G
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAALNGKGLGEI 94
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 103 bits (259), Expect = 8e-27
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDTYT 349
P V L + + + + + G PKP +SWL+ + + P R AEG
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
L I + DA Y C+AVN+ G + +A L +
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 70.8 bits (174), Expect = 3e-15
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-ESGGHFHVETSER 442
P F V + +G++V++ I G PKP ++W R+ + + F E
Sbjct: 4 APPTFKVSLMDQSVR---EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
L I A D Y A N+ G ++++
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 44.2 bits (105), Expect = 5e-06
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIII-FIKEIRK 60
+ EG + + I G+ VS +N + V+ D R + + I +
Sbjct: 12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER 71
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITG 87
DAG YT N G+ + + G
Sbjct: 72 GDAGFYTCKAVNEYGARQCEARLEVRG 98
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 105 bits (263), Expect = 9e-27
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
+ + ++ + P + + ++ A+F C + G P P + W K +
Sbjct: 25 NEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE 84
Query: 336 SARHHIFAEGD-TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
S I + + +L I+ V G D +Y C+AVN G + AEL++ T K
Sbjct: 85 SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG 143
Score = 91.1 bits (226), Expect = 9e-22
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 7/144 (4%)
Query: 352 INSVYGV-DADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF----RDTAYFDKGENV 406
I+ + G + +N V++ A L + K +V P F D + G
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVE-GSAA 59
Query: 407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER-HAILTIRDASNVDTAPYRVVAEN 465
GYP P++ W++D+ ++ HF ++ E + LTI + D A Y A N
Sbjct: 60 RFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 119
Query: 466 DLGMDSAIVKIQISDRPDPPQFPT 489
LG + ++ + +
Sbjct: 120 SLGEATCTAELLVETMGKEGEGEG 143
Score = 52.5 bits (126), Expect = 2e-08
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 1/105 (0%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIII-FIKEIRK 60
+ + EG + G EV K+ V+ F+ ++ I E+
Sbjct: 48 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG 107
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHT 105
+D YT NS G + T + + + G + E +
Sbjct: 108 DDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDEEEE 152
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 110 bits (275), Expect = 1e-26
Identities = 47/250 (18%), Positives = 76/250 (30%), Gaps = 22/250 (8%)
Query: 256 EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN----HNAQ 311
R +A S + AP P R + + +
Sbjct: 83 TQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVR 142
Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVNK 370
F+C G P P+ISWLK RE R ++L++ SV D Y C NK
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 202
Query: 371 GGVKSTKAELIIMTAPKFNVPPRFRDT---AYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
G L ++ P G +V +P I W + E
Sbjct: 203 FGSIRQTYTLDVLERSPH-RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVE 261
Query: 428 V----IESGGHFHVE---------TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474
V + G +V T + +L++ + + D Y +A N +G
Sbjct: 262 VNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSA 321
Query: 475 KIQISDRPDP 484
+ + +
Sbjct: 322 WLVVLPAEEE 331
Score = 106 bits (266), Expect = 2e-25
Identities = 45/318 (14%), Positives = 80/318 (25%), Gaps = 47/318 (14%)
Query: 289 AAKAPEIIV-PLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGD 346
AA+ P + C G P W+K + PS R +
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV----G 59
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM---------------TAPKFNVP 391
L + + D+ Y CR V + +
Sbjct: 60 PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119
Query: 392 PRFRDTAYFDK-------GENVVVKIPFTGYPKPKITWYRDNEVIE-SGGHFHVETSERH 443
P + DK V + P G P P I+W ++ ++ +
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 179
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE-------DIGHD 496
L + D Y V EN G + + +R +G D
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD 239
Query: 497 -----------SLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLS 545
+ W + GS + ++ + +++ ++
Sbjct: 240 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVT 299
Query: 546 PGHQYEFRVYAENVYGRS 563
E+ A N G S
Sbjct: 300 FEDAGEYTCLAGNSIGFS 317
Score = 83.5 bits (206), Expect = 1e-17
Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 16/138 (11%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
+N+ G + ++ + + + N A+ + +F C + +P I
Sbjct: 199 VENKFGSI---RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ 255
Query: 326 WLKGSR----EITPSARHHI---------FAEGDTYTLIINSVYGVDADEYVCRAVNKGG 372
WLK ++ P ++ + + L +++V DA EY C A N G
Sbjct: 256 WLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG 315
Query: 373 VKSTKAELIIMTAPKFNV 390
A L+++ A + V
Sbjct: 316 FSHHSAWLVVLPAEEELV 333
Score = 43.8 bits (103), Expect = 1e-04
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 30 TKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGL 88
KNGR + + R + + ++ + D G+YT + N GS+ T+T+++
Sbjct: 158 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER 217
Query: 89 PGPP 92
Sbjct: 218 SPHR 221
Score = 37.7 bits (87), Expect = 0.008
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 8/114 (7%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
L GD ++ G PM K+G + +R + + +
Sbjct: 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL---VGPQRLQ-VLNASH 70
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPK 114
ED+G Y+ + + ++ P G + E + P
Sbjct: 71 EDSGAYSCRQRLTQRVLC---HFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121
Score = 37.3 bits (86), Expect = 0.011
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 32 NGRVVQSDDRFKFTVLDDYIIIF---------IKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
NG V D TVL + + EDAG+YT NS G +
Sbjct: 263 NGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW 322
Query: 83 INITGLP 89
+ +
Sbjct: 323 LVVLPAE 329
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 102 bits (257), Expect = 1e-26
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTL 350
+ + +A + + ++ C I + T ++W G R++ S ++ I E L
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+ + +D Y C+ VN G S+ AEL +
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 65.4 bits (160), Expect = 2e-13
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 403 GENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
G +V Y + ++TWY +E+ + + + AIL ++D + +D YR
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75
Query: 462 VAENDLGMDSAIVKIQI 478
ND G DS+ ++ +
Sbjct: 76 KVVNDYGEDSSYAELFV 92
Score = 58.1 bits (141), Expect = 6e-11
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 7 IPEGDNTK--VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
EG + K KI DQ +V+ R +++ ++++ T D I+++K+I K D G
Sbjct: 13 GEEGGHVKYVCKIE-NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDG 71
Query: 65 DYTVNLSNSSGSVSGTFTINITGLP 89
Y + N G S + + G+
Sbjct: 72 TYRCKVVNDYGEDSSYAELFVKGVR 96
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 109 bits (274), Expect = 2e-26
Identities = 31/230 (13%), Positives = 56/230 (24%), Gaps = 20/230 (8%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-------TGCPKPTISWLK 328
+ A + ++ +C + P+ ++W K
Sbjct: 2 DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK 61
Query: 329 GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 388
T L + D+ YVC N EL +
Sbjct: 62 NDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDA 121
Query: 389 NVPPRFRDTAYFDKGENVVVKIP-----FTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
P + V+ P KI WY+D+ +++ +
Sbjct: 122 -FLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLSVRGT 179
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMD------SAIVKIQISDRPDPPQF 487
L + D + D YR V S ++I+ P
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVI 229
Score = 100 bits (250), Expect = 2e-23
Identities = 35/237 (14%), Positives = 63/237 (26%), Gaps = 29/237 (12%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP--LRNANAIQNHNAQFQCTITGCPKPT 323
+N + S +++ + A P I P L + +
Sbjct: 100 TRNASYCD---KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK 156
Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII- 382
I W K S + + G T L+++ V DA Y C + I
Sbjct: 157 IQWYKDSLLLDKDNEKFLSVRGTT-HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215
Query: 383 --MTAPKFNVPPRF---RDTAYFDKGENVVVK---IPFTGYPKPKITWYRDNEV------ 428
+ K P T G + + TG P + W+ N+
Sbjct: 216 LRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAY 275
Query: 429 ----IESGGHFHVETSER---HAILTIRDASNVDT-APYRVVAENDLGMDSAIVKIQ 477
+ G + L + D ++ V N L + ++
Sbjct: 276 PGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
Score = 49.3 bits (117), Expect = 2e-06
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 18 FYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77
F +++ K+ ++ D+ +V ++ + ++ EDAG Y L+ +
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLL-VHDVALEDAGYYRCVLTFAHEGQ 206
Query: 78 SGTFTINIT 86
T +I
Sbjct: 207 QYNITRSIE 215
Score = 39.7 bits (92), Expect = 0.002
Identities = 9/82 (10%), Positives = 27/82 (32%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
+ + ++ KN + + +++ +ED+G Y N+S
Sbjct: 50 SVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKM 109
Query: 80 TFTINITGLPGPPIGPLDVSEI 101
+ + + + + +I
Sbjct: 110 SIELRVFENTDAFLPFISYPQI 131
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 108 bits (270), Expect = 2e-26
Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 17/225 (7%)
Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPT 323
+ S + + +KDP A + + ++ A C IT K +
Sbjct: 69 TELEDPM---AGSTTIHLYVKDP----AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDS 121
Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
+S ++ + F+ II +D++ YVC+ + G ++ + +
Sbjct: 122 VSLMREGGRQVLRKTVYFFSPWRG--FIIRKAKVLDSNTYVCKTMVNGRESTS-TGIWLK 178
Query: 384 TAPKFNVPPRFRDTA---YFDKGENVVVKIPFTGYPKPKITWYRDNEV---IESGGHFHV 437
PP+ + +GE + T + + I F
Sbjct: 179 VNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238
Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
++ L++ D Y VA ND+G +A + Q+ +
Sbjct: 239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
Score = 84.2 bits (208), Expect = 4e-18
Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 18/200 (9%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
AP I +C G ++ W I+P E TL
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEW---DGPISPYWTLDP--ESPGSTLT 54
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK-FNVPPRFRDTAYFDKGENVVVKI 410
+ + Y C + ST L + +N+ + +G+ V+
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQ---EVTVVEGQEAVLPC 111
Query: 411 PFTGY-PKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND-LG 468
T K ++ R+ + + R IR A +D+ Y +
Sbjct: 112 LITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG--FIIRKAKVLDSNTYVCKTMVNGRE 169
Query: 469 MDSAIVKIQISDR-PDPPQF 487
S + ++++ P+PPQ
Sbjct: 170 STSTGIWLKVNRVHPEPPQI 189
Score = 34.2 bits (78), Expect = 0.088
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Query: 1 MPNALYIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR 59
+ + + EG + + VSL + G + I I++ +
Sbjct: 95 LAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT-VYFFSPWRGFI-IRKAK 152
Query: 60 KEDAGDYT-VNLSNSSGSVSGTFTINITGLPGPP----IGPLDVSEITKHTCTLH 109
D+ Y + N S S + + + P + P + I +
Sbjct: 153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIV 207
Score = 33.8 bits (77), Expect = 0.12
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFT--VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
+ V L + ++ F + + + +DAG Y+ SN G+ +
Sbjct: 213 AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT 272
Query: 79 GTFTINI 85
T +
Sbjct: 273 ATMNFQV 279
Score = 32.2 bits (73), Expect = 0.38
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 52 IIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGP-PIGPLDVSEITKHTCTLH 109
+ + ++ G Y + S T + + + +V+ + L
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLP 110
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 102 bits (256), Expect = 3e-26
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
PG P + +S +T L W+PPK G ++ Y ++ I D F
Sbjct: 8 PGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHF 64
Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
V GL +G Y+F + A N G+G E ++P D P
Sbjct: 65 TVTGLHKGTTYIFRLAAKNRAGLGEEFEKE----IRTPEDLSGPS 105
Score = 80.5 bits (199), Expect = 1e-18
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 3/105 (2%)
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
S P P + +++ + L W P + G + GY + ++
Sbjct: 1 GSSGSSGPGRPTM-MISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFG 58
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
+ L +G Y FR+ A+N AGL
Sbjct: 59 KDDQH-FTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLS 102
Score = 77.8 bits (192), Expect = 1e-17
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFT 537
S P P + ++ L W P G + Y ++ + +
Sbjct: 5 SSGPGRPTM-MISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQ 62
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
+TGL G Y FR+ A+N G +
Sbjct: 63 HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 98
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 107 bits (269), Expect = 3e-26
Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 20/209 (9%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
S G G I + P + V +++ + W PP+ + Y + +
Sbjct: 2 SPGISGGGGGIP---VIDGPTQ-ILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGG 57
Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
+ + VQ L G Y + AV +
Sbjct: 58 ---KTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASST-------QFTTEIDA 107
Query: 193 PGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS--QIN 250
P V ++L WD + Q Y + + + + V V +
Sbjct: 108 PKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTT 163
Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ +L+ G +Y + A + S+P++ +
Sbjct: 164 LTDLVPGTEYGVGISAVMNSKQSIPATMN 192
Score = 106 bits (265), Expect = 1e-25
Identities = 37/219 (16%), Positives = 66/219 (30%), Gaps = 24/219 (10%)
Query: 66 YTVNLS--NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
Y V++S + S + T P L V T + L W+ + +
Sbjct: 81 YEVSISAVRGTNE-SDASSTQFTTEIDAPKN-LRVGSRTATSLDLEWDNSEAE----AQE 134
Query: 124 YVVERRDISMPHWICISTTCHD---TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
Y V ++ + + T + L G EY + AV + P
Sbjct: 135 YKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATM--- 191
Query: 181 IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
+ + P +VT ++L W K I Y I + +
Sbjct: 192 ----NARTELDSPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVTV 243
Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ + +L G +Y + A+ SL S+
Sbjct: 244 PR--DRTSYTLTDLEPGAEYIISITAERGRQQSLESTVD 280
Score = 81.4 bits (201), Expect = 3e-17
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 5/111 (4%)
Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
+ A + S + D P+ V S++L+W I +Y +
Sbjct: 175 VGISAVMNSK-QSIPATMNARTELDSPRDLMVTASSETSISLIWTKA----SGPIDHYRI 229
Query: 519 EKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
S T+ +T L PG +Y + AE +S ST
Sbjct: 230 TFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVD 280
Score = 74.1 bits (182), Expect = 8e-15
Identities = 23/115 (20%), Positives = 35/115 (30%), Gaps = 9/115 (7%)
Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
+ A +S Q + D P+ V SL L W + Y V
Sbjct: 83 VSISAVRGTN-ESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNS----EAEAQEYKV 137
Query: 519 EKRE----HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+ G T +T L PG +Y + A +S P+T +
Sbjct: 138 VYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMN 192
Score = 71.0 bits (174), Expect = 1e-13
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
D P V D+ + W P + Y + E +++ + ++
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPL--SQYSV 72
Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTS 569
L PG +YE + A SD S+T
Sbjct: 73 QALRPGSRYEVSISAVRGTNESDASSTQ 100
Score = 65.2 bits (159), Expect = 8e-12
Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 20/168 (11%)
Query: 8 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT 67
E + + K+ Y+ + + + + T L +Y
Sbjct: 128 SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGT-------------EYG 174
Query: 68 VNLS-NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVV 126
V +S + S T+N P L V+ ++ + +L W G + HY +
Sbjct: 175 VGISAVMNSKQSIPATMNARTELDSPRD-LMVTASSETSISLIWTKA--SG--PIDHYRI 229
Query: 127 ERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
S ++ T++ + L G EY+ + A
Sbjct: 230 TFTPSSGISSE-VTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLE 276
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 107 bits (269), Expect = 3e-26
Identities = 38/245 (15%), Positives = 74/245 (30%), Gaps = 21/245 (8%)
Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 306
S ++ N +R + SA+ + +KDP A V + +
Sbjct: 51 SILSTNNATFQNTGTYRCTEPGDPL---GGSAAIHLYVKDP----ARPWNVLAQEVVVFE 103
Query: 307 NHNAQFQCTITGC-PKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYV 364
+ +A C +T + +S ++ R + + I+ + + +Y
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFIQSQDYQ 160
Query: 365 CRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTA---YFDKGENVVVKIPFTGYPKPKI 420
C A+ G V S L + PP +GE + +
Sbjct: 161 CSALMGGRKVMSISIRLKVQKVI--PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFD 218
Query: 421 TWYRDNE---VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477
+ + N I FH ++ L + Y VA N G S + +
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
Query: 478 ISDRP 482
+ +
Sbjct: 279 VVESA 283
Score = 81.5 bits (201), Expect = 4e-17
Identities = 26/200 (13%), Positives = 61/200 (30%), Gaps = 20/200 (10%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
P I + +C G ++ W PS ++++G + L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDG-----PPSPHWTLYSDGSSSILST 55
Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK-FNVPPRFRDTAYFDKGENVVVKIP 411
N+ + Y C S L + + +NV + + ++ ++
Sbjct: 56 NNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQ---EVVVFEDQDALLPCL 112
Query: 412 FTGY-PKPKITWYR-DNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND-LG 468
T + ++ R + ++ TI A + + Y+ A
Sbjct: 113 LTDPVLEAGVSLVRVRGRPLMRHTNYSFSPW---HGFTIHRAKFIQSQDYQCSALMGGRK 169
Query: 469 MDSAIVKIQISDRPD-PPQF 487
+ S +++++ PP
Sbjct: 170 VMSISIRLKVQKVIPGPPAL 189
Score = 71.9 bits (176), Expect = 6e-14
Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 14/134 (10%)
Query: 266 AQNEAGLSLPSSASNSVQIK-DPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTI 324
A S S+++K + P + + I+ AQ C+ +
Sbjct: 163 ALMGGR----KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFD 218
Query: 325 SWLKGS---REITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 381
+L+ + I + H TL ++ V A Y C A N G ST
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
Query: 382 IMTAPKFNVPPRFR 395
++
Sbjct: 279 VV------ESAGNS 286
Score = 39.6 bits (92), Expect = 0.002
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKF--TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77
+ D +V L N + + F + + + ++ + AG+Y+ SN G
Sbjct: 212 SVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKH 271
Query: 78 SGTFTINITGLPG 90
S + + G
Sbjct: 272 STSMFFRVVESAG 284
Score = 34.6 bits (79), Expect = 0.082
Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 10/116 (8%)
Query: 1 MPNALYIPEGDNTKVK-IFYAGDQPMEVSLTK-NGRVVQSDDRFKFTVLDDYIIIFIKEI 58
+ + + E + + + VSL + GR + + F + I
Sbjct: 95 LAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF---SPWHGFTIHRA 151
Query: 59 RKEDAGDYT-VNLSNSSGSVSGTFTINITGLPGPP----IGPLDVSEITKHTCTLH 109
+ + DY L +S + + + + P + P ++ I +
Sbjct: 152 KFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIV 207
Score = 31.5 bits (71), Expect = 0.75
Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 1/59 (1%)
Query: 52 IIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGP-PIGPLDVSEITKHTCTLH 109
I+ ++ G Y S + + P + +V L
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLP 110
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 101 bits (253), Expect = 5e-26
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDT 347
A P I N + + + ++G P P +SW R + H + +E
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
++LI V DA Y C A N+ G + +L +
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 67.3 bits (165), Expect = 4e-14
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
M P+F P +G + +G P P ++WY + ++S + SE+
Sbjct: 3 MGPPRFIQVPENMSID---EGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK 59
Query: 443 -HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
L D Y VA+N G + V++ + +
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 50.0 bits (120), Expect = 6e-08
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 31 KNGRVVQSDDRFKFTVLDD-YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITG 87
NGR VQSDD K V + + + +R DAG Y N +G + T +++
Sbjct: 41 LNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 101 bits (254), Expect = 5e-26
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD-- 346
++ AP + L++ + F C + G PKP I W K ++I+P + H+
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
T +L + D Y A N G S L++
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104
Score = 73.2 bits (180), Expect = 6e-16
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-ESGGHFHVETSERH 443
AP F + + +G V G PKPKI W++D + I H+ ++
Sbjct: 8 APFFEMKLKHYKIF---EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 444 -AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
L ++ D Y ++A N G S ++ + P
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
Score = 47.3 bits (113), Expect = 6e-07
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAG 64
I EG AG+ ++ K+G+ + D + +D G
Sbjct: 20 IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDG 79
Query: 65 DYTVNLSNSSGSVSGTFTINITGLPGPP 92
+YT+ +N G +S T + + + P
Sbjct: 80 NYTIMAANPQGRISCTGRLMVQAVNSGP 107
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 104 bits (260), Expect = 7e-26
Identities = 34/195 (17%), Positives = 53/195 (27%), Gaps = 13/195 (6%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKP--TISWLKGSREITPSARHHIFAEGDTYTL 350
P + C + WL + + F L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 351 IINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNV---PPRFRD---TAYFDKG 403
I +V D Y C + + ++ P+ P Y G
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 404 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 463
+NV ++ G P P I W + E + S + L I + D Y A
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV----LKIFNIQLEDEGIYECEA 184
Query: 464 ENDLGMDSAIVKIQI 478
EN G D +I +
Sbjct: 185 ENIRGKDKHQARIYV 199
Score = 79.9 bits (197), Expect = 2e-17
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 266 AQNEAGLSLPSSASNSVQIKDP--MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT 323
+ + S + +I+V ++ A+ N +C G P P
Sbjct: 85 VSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD 144
Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
I W K + +A L I ++ D Y C A N G +A + +
Sbjct: 145 IRWRKVLEPMPSTAEIST----SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 38.7 bits (90), Expect = 0.002
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKF--TVLDDYIIIFIKEIR 59
+Y G N ++ F G+ ++ K + S VL I I+
Sbjct: 120 FKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVL------KIFNIQ 173
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINITG 87
ED G Y N G I +
Sbjct: 174 LEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 32.9 bits (75), Expect = 0.15
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 24 PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
+ N V + V ++I + D G+Y+ +S+ S + S
Sbjct: 39 DLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKS 93
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 104 bits (260), Expect = 1e-25
Identities = 29/209 (13%), Positives = 57/209 (27%), Gaps = 22/209 (10%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY---- 348
+ + +N + + CT +G P + W T ++
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 349 ----TLIINSVYGVDADEYVCRAVNKGGVKSTKA--ELIIMTAPKFNVPPRFRDTAYFDK 402
+ +SV D EY C +GG + L ++ P +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV---PSSVTI 118
Query: 403 GENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI--------LTIRDASN 453
G V+ G P + +W++D + + + L +
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRP 482
D+ Y A+N G +
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 74.6 bits (183), Expect = 2e-15
Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 16/135 (11%)
Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT-ITGCPKPT 323
E G S + + P P ++ + A C+ G P
Sbjct: 83 MVSEEGG-QNYGEVSIHLTVLVP-----PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSE 136
Query: 324 ISWLKGSREITPSARHHI--------FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS 375
SW K + + + + LI + V D+ EY C+A N G
Sbjct: 137 YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAM 196
Query: 376 TKAELIIMTAPKFNV 390
M A + NV
Sbjct: 197 RSEAA-HMDAVELNV 210
Score = 36.1 bits (83), Expect = 0.015
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYI--------II 53
+ + +PE ++ K+ Y+G V + + + Y I
Sbjct: 8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGI 67
Query: 54 FIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPI 93
+ ++D G+YT +S G G +I++T L P
Sbjct: 68 TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSK 107
Score = 36.1 bits (83), Expect = 0.020
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF--------IKEIRKEDAGDYTVNLS 71
G P E S K+G + + D K + + D+G+Y
Sbjct: 130 DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189
Query: 72 NSSGSVSGTFTINITGLPGPPIG 94
N G+ + ++ + +G
Sbjct: 190 NGYGTAMRSEAAHMDAVE-LNVG 211
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 100 bits (251), Expect = 2e-25
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 2/109 (1%)
Query: 468 GMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS 527
G P P+ + + L WR P D + Y V + ++
Sbjct: 4 GSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIAR 63
Query: 528 W--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ + I L P Y FRV A+N +G + S + T
Sbjct: 64 ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ 112
Score = 100 bits (251), Expect = 2e-25
Identities = 26/92 (28%), Positives = 37/92 (40%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
PS P V + V F+ L+W P D Y + + G + N +
Sbjct: 16 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEM 75
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
Q+ I NL+ Y FRV AQN+ G S+
Sbjct: 76 QVTIQNLMPATVYIFRVMAQNKHGSGESSAPL 107
Score = 95.6 bits (238), Expect = 9e-24
Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 5/123 (4%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
SSGS LP P + S ++ L W P D Y V
Sbjct: 2 SSGSSGEHAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEG 60
Query: 133 MPHW-ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
+ + ++ + +Q L Y+F VMA N++G G P++ ++ +
Sbjct: 61 IARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA---PLRVETQPESGP 117
Query: 192 PPG 194
G
Sbjct: 118 SSG 120
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 99.3 bits (248), Expect = 3e-25
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
AP I L N + + CT +G P P I W K + + + + + L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLT 67
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 388
I V D Y C+A + G +A II A +
Sbjct: 68 IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104
Score = 72.8 bits (179), Expect = 7e-16
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET 439
++ AP + T+ GE++ V +G P P+I W++DNE + ++
Sbjct: 5 VLERVAPTITGNLENQTTS---IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61
Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
R LTIR D Y A + LG I + +E
Sbjct: 62 GNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE---GAQEKTNLE 108
Score = 50.0 bits (120), Expect = 6e-08
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 30 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
K+ + D D + I+ +RKED G YT + G I G
Sbjct: 45 FKDNETLVEDSGIVLK--DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
Query: 90 GPP 92
Sbjct: 103 EKT 105
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 99.3 bits (247), Expect = 5e-25
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 471 SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNIT----NYIVEKREHPMS 526
S + ++ P P V + H S+ L W + + +E+ + M
Sbjct: 6 SGMEPHKVVP-LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64
Query: 527 SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
S+ + T + GL P Y+FR+ + G + S + TT
Sbjct: 65 SYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATT 112
Score = 85.8 bits (212), Expect = 3e-20
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 72 NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH----YVVE 127
+S S + P PP+ V ++T H+ L+W+ + + + +E
Sbjct: 2 SSGSSGMEPHKVVPLSKPHPPV----VGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIE 57
Query: 128 RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
D M + I T + T +V+GL Y F + + +G ++
Sbjct: 58 EEDPKMHSYGVIYTG-YATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT----- 111
Query: 188 DKPSPP 193
+ S P
Sbjct: 112 TRESGP 117
Score = 72.7 bits (178), Expect = 9e-16
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI----DKHEVGSDAWQRVNVAICA 245
S P PVV +V + L WD + Q W+ ++ + ++ +
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYG--VIYTGY 73
Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
++ + L Y+FR+ + +G S + ++
Sbjct: 74 ATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 104 bits (260), Expect = 7e-25
Identities = 38/277 (13%), Positives = 69/277 (24%), Gaps = 19/277 (6%)
Query: 19 YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY-TVNLSNSSGSV 77
Y + N + + + + +I + +
Sbjct: 35 YFHVNANYIVWKTNHFTIPKEQYTI--INRTASSVTFTDIASLNIQLTCNILTFGQLEQN 92
Query: 78 SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI 137
TI P P L W+ + + L+ T++ ++ +
Sbjct: 93 VYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGR-ETHLE-TNFTLKSEWATHKFAD 149
Query: 138 CI-STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYD--KPSPPG 194
C + + V A N G P KP+PP
Sbjct: 150 CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS-----DHINFDPVYKVKPNPPH 204
Query: 195 IPVVTQVGG--DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ--IN 250
V + L+W P I Y I + W ++ A ++
Sbjct: 205 NLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFT 263
Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
+ +L +Y FR+ E G S S
Sbjct: 264 VQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 300
Score = 71.8 bits (175), Expect = 8e-14
Identities = 42/284 (14%), Positives = 71/284 (25%), Gaps = 25/284 (8%)
Query: 309 NAQFQCTI-------TGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD 361
N C + I W I P ++ I + +
Sbjct: 21 NFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI-PKEQYTIINRTASSVTFTDIASLNIQL 79
Query: 362 EYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKIT 421
+ +I P+ K T T
Sbjct: 80 TCNILTFGQLEQNVYGITIISGLPPEKPKNLSCI-VNEGKKMRCEWDGGRETHLE----T 134
Query: 422 WYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY--RVVAENDLGM---DSAIVKI 476
+ + + D S V V AEN LG D
Sbjct: 135 NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDP 194
Query: 477 QISDRPDPPQFPTVEDI--GHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT 534
+P+PP +V + L L W P + Y ++ R S+W ++
Sbjct: 195 VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILK-YNIQYRTKDASTWSQIPPE 253
Query: 535 RF----TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
++ + L P +Y FR+ G+ S S+ +
Sbjct: 254 DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 297
Score = 59.8 bits (144), Expect = 6e-10
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 8/130 (6%)
Query: 67 TVNLSNSSGSVS---GTFTINITGLPGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVT 122
V N+ G V+ F P PP + SE L W P + +
Sbjct: 175 WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILK 234
Query: 123 HYVVERRDISMPHW---ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
Y ++ R W T ++F VQ L EY+F + + E+G G +
Sbjct: 235 -YNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 293
Query: 180 PIKAKSPYDK 189
+ D+
Sbjct: 294 EASGITYEDR 303
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 98.2 bits (245), Expect = 7e-25
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDT 347
+ P + + + + C ++G P P +SW + + P + H + E
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
++LII V DA Y C A N+ G S EL++
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104
Score = 70.9 bits (174), Expect = 3e-15
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER-H 443
P F P D + G+ + +G P P ++W D + + + E
Sbjct: 9 RPHFLQAPG--DLTVQE-GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
L I ++ D Y +A N G +S +++ ++ + P
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
Score = 57.0 bits (138), Expect = 2e-10
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYII-IFIKEIR 59
P L + EG ++ +G P ++S +G+ V+ D K V ++ + + I+ +
Sbjct: 16 PGDLTVQEGKLCRMDCKVSGL-PTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVT 74
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPP 92
DAG YT +N +G S + + + P
Sbjct: 75 SRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 97.9 bits (244), Expect = 2e-24
Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-----GN 533
S P P VE + + + P GG I Y E R W
Sbjct: 5 SSGPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 63
Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ + I GL P Y R+ A N G + S S+ T
Sbjct: 64 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 104
Score = 96.4 bits (240), Expect = 5e-24
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 8/119 (6%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC----ISTTCH 144
P P E T + ++ P+ GG+ + Y E R + W
Sbjct: 8 PSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 65
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGG 203
+ + GL Y + A+N G+G P +PS P + G
Sbjct: 66 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ--PVREPSAPKLEGSGPSSG 122
Score = 93.7 bits (233), Expect = 4e-23
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
S PS P I V + +D+P GG I Y + VG + W
Sbjct: 1 GSSGSSGPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 243 ICAPSQ---INIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
S + I L Y R+ A N GL S+AS
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 100
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 95.5 bits (238), Expect = 6e-24
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
SS S+ +++ AP L++ I+ + QC++ G P P I+WL + I
Sbjct: 2 SSGSSGMEV-------APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY 54
Query: 336 SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+ E L I D Y C A N G S A + +
Sbjct: 55 ARSTC---EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 70.0 bits (172), Expect = 5e-15
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 376 TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF 435
+ + AP F+ + D A + G++ V++ G P P+ITW + + I+
Sbjct: 2 SSGSSGMEVAPSFSSVLK--DCAVIE-GQDFVLQCSVRGTPVPRITWLLNGQPIQYARST 58
Query: 436 HVETSERHAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKIQ 477
A L I+DA D Y +AEN LG SA V +
Sbjct: 59 CEAG---VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 40.0 bits (94), Expect = 2e-04
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 30 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
NG+ +Q + I++ ED G YT N+ G VS + + +
Sbjct: 46 LLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 95.5 bits (238), Expect = 7e-24
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS--ARHHIFAEGDT 347
P+I + + + C TG P P ++W G R+I R HI D
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
TLII V D Y N+ G S + I
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 81.2 bits (201), Expect = 6e-19
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES--GGHFHVETSE 441
PK P D+G+ + V FTG P P++TW I S G FH+E ++
Sbjct: 4 IPPKIEALPS---DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
L I D D Y + N+ G DSA V I I
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 61.2 bits (149), Expect = 6e-12
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL--DDYIIIFIKEIR 59
P+ + I EG V + G+ EV+ + GR + S ++ +F + DD + I +++
Sbjct: 12 PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQ 71
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINITGL 88
K+D G YT++L N GS S T I+I +
Sbjct: 72 KQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 101 bits (253), Expect = 8e-24
Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 24/303 (7%)
Query: 2 PNALYIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
L GD+ + + V S + ++ + ++
Sbjct: 13 RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL---RSVQL 69
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
D+G+Y+ +G +GT + + +P + W P L
Sbjct: 70 HDSGNYSCY---RAGRPAGTVHLLV-DVPPEEPQLSCFRKSPLSNVVCEWGPRS-TPSL- 123
Query: 121 VTHYVVERRDISMPHWICISTTCHD-------TTFIVQGLTEGQEYLFHVMAVNENGMGP 173
T V+ R C + + + Y+ + + G
Sbjct: 124 TTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKF 183
Query: 174 PLEGINPIKAKSPYDKPSPPGIPVVTQVGGD--FVNLSWDKPLD-DGGSRIQGYWIDKHE 230
+P PP VT V + +++++W P + + +
Sbjct: 184 SKTQTFQG---CGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRA 240
Query: 231 VGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
S + V I + G ++ ++ AQ E G S S +
Sbjct: 241 ERSKTFTTWMV-KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTES 299
Query: 291 KAP 293
++P
Sbjct: 300 RSP 302
Score = 91.8 bits (227), Expect = 2e-20
Identities = 42/298 (14%), Positives = 85/298 (28%), Gaps = 25/298 (8%)
Query: 292 APEIIVPLRNANAIQNHNAQFQC-TITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
P V ++ + C + T+ W+ G L
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA---GMGRRL 62
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK- 409
++ SV D+ Y C G + L++ P+ FR + NVV +
Sbjct: 63 LLRSVQLHDSGNYSCYR---AGRPAGTVHLLVDVPPEEPQLSCFRKSPL----SNVVCEW 115
Query: 410 --IPFTGYPKPKITWYRDNEVIESGGHFH--VETSERHAILTIRDASNVDTAPY--RVVA 463
+ R + + + E D++ Y +
Sbjct: 116 GPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCV 175
Query: 464 ENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALV--WRAP-IWDGGSNITNYI 517
+ +G + + +PDPP TV + + L W+ P W+ +
Sbjct: 176 ASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFE 235
Query: 518 VEKREHPMSSWIRVGNTRFTTMA-ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ R ++ I G ++ ++ A+ +G+ + S S
Sbjct: 236 LRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMG 293
Score = 64.1 bits (155), Expect = 3e-11
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 5/150 (3%)
Query: 67 TVNLSNSSGSVS---GTFTINITGLPGPPIGP-LDVSEITKHTCTLHWNPP-KYDGGLKV 121
++ +++S GS TF P PP + ++ W P ++
Sbjct: 172 SMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYR 231
Query: 122 THYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
+ + R + ++ G ++ + A E G G E
Sbjct: 232 LRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEA 291
Query: 182 KAKSPYDKPSPPGIPVVTQVGGDFVNLSWD 211
+ SPP V+ D
Sbjct: 292 MGTPWTESRSPPAENEVSTPMQALTTNKDD 321
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 98.1 bits (244), Expect = 1e-23
Identities = 37/215 (17%), Positives = 64/215 (29%), Gaps = 17/215 (7%)
Query: 91 PPIGPLDVSEITKHTC--TLHWNPPKYDGGLKVTHYVVERRDISMPHWICI-STTCHDTT 147
PP P ++S I W+ + + L+ T++ ++ + C +
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGGR-ETHLE-TNFTLKSEWATHKFADCKAKRDTPTSC 64
Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEG-INPIKAKSPYDKPSPPGIPVVTQVGG--D 204
+ V A N G +P+ KP+PP V
Sbjct: 65 TVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVY----KVKPNPPHNLSVINSEELSS 120
Query: 205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ--INIPNLIEGRQYEF 262
+ L+W P I Y I + W ++ A ++ + +L +Y F
Sbjct: 121 ILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF 179
Query: 263 RVYAQNEAGLSLPSSASNSVQIKDPMAA--KAPEI 295
R+ E G S S K P
Sbjct: 180 RIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 214
Score = 64.2 bits (156), Expect = 6e-12
Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)
Query: 460 RVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIG--HDSLALVWRAPIWDGGSNIT 514
V AEN LG D +P+PP +V + L L W P I
Sbjct: 79 WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVI-IL 137
Query: 515 NYIVEKREHPMSSWIRVGNTRF----TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
Y ++ R S+W ++ ++ + L P +Y FR+ G+ S S+
Sbjct: 138 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 197
Query: 571 LITT 574
+
Sbjct: 198 EASG 201
Score = 63.9 bits (155), Expect = 8e-12
Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 8/134 (5%)
Query: 67 TVNLSNSSGSVS---GTFTINITGLPGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVT 122
V N+ G V+ F P PP + SE L W P + +
Sbjct: 79 WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVI-IL 137
Query: 123 HYVVERRDISMPHW---ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
Y ++ R W T ++F VQ L EY+F + + E+G G +
Sbjct: 138 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 197
Query: 180 PIKAKSPYDKPSPP 193
+ D+PS
Sbjct: 198 EASGITYEDRPSKE 211
Score = 43.4 bits (102), Expect = 7e-05
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 4/90 (4%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW--IRVGNTRFTTM 539
P+ P+ + + W TN+ ++ +T +
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHKFADCKAKRDTPTSCT 65
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
E V AEN G+ +
Sbjct: 66 VDYSTVYFVNIEVWVEAENALGKVTSDHIN 95
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 94.4 bits (235), Expect = 2e-23
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 11/112 (9%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
S +S VQ + II L + + + +A F+C I+ + W +
Sbjct: 3 SGSSGLVQ------GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA 56
Query: 336 SARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
+ + I A+ G + L + + D+ A G + A L + P
Sbjct: 57 NELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKP 104
Score = 55.9 bits (135), Expect = 7e-10
Identities = 10/93 (10%), Positives = 30/93 (32%), Gaps = 5/93 (5%)
Query: 375 STKAELIIM-TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG 433
S+ + ++ D + G + + + + W+ D + +
Sbjct: 2 SSGSSGLVQGRRVHIIEDLE--DVDVQE-GSSATFRCRISPANYEPVHWFLDKTPLHANE 58
Query: 434 HFHVETSE-RHAILTIRDASNVDTAPYRVVAEN 465
++ + +LT+R + D+ A +
Sbjct: 59 LNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGD 91
Score = 43.2 bits (102), Expect = 2e-05
Identities = 9/84 (10%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD-YIIIFIKEIRKEDAGD 65
+ EG + + + V + + +++ + Y ++ ++++ +D+G
Sbjct: 25 VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGT 84
Query: 66 YTVNLSNSSGSVSGTFTINITGLP 89
+G + + +T P
Sbjct: 85 IYF----EAGDQRASAALRVTEKP 104
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 93.5 bits (233), Expect = 2e-23
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
PK R G +++ F G P P TW + V+
Sbjct: 2 KPKILTASR---KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+ A D+ Y++ +N+LG D AI ++ +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 92.0 bits (229), Expect = 8e-23
Identities = 18/91 (19%), Positives = 32/91 (35%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
P+I+ R + G P PT +W G + + A+ T ++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELII 382
S D+ Y + N+ G E+I+
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 69.7 bits (171), Expect = 6e-15
Identities = 12/84 (14%), Positives = 26/84 (30%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+ I G +++ + G + T IF ++
Sbjct: 9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRA 68
Query: 62 DAGDYTVNLSNSSGSVSGTFTINI 85
D+G+Y + + N G F + +
Sbjct: 69 DSGNYKLKVKNELGEDEAIFEVIV 92
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 92.8 bits (231), Expect = 6e-23
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
++ A L N + A F C P T++W KG E+ S +H EG T
Sbjct: 5 SSGANCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTL 63
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
L I+++ D+D Y C G ++A+L++
Sbjct: 64 RLTISALEKADSDTYTCDI----GQAQSRAQLLV 93
Score = 56.2 bits (136), Expect = 4e-10
Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 14/105 (13%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFT---GYPKPKITWYRDNEVIESGGHFHVETSE 441
A F + ++ V FT +P +TW + + + G
Sbjct: 8 ANCFTEELT--NL-QVEEKGTAV----FTCKTEHPAATVTWRKGLLELRASGKHQPSQEG 60
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
LTI D+ Y A + +Q R P
Sbjct: 61 LTLRLTISALEKADSDTYTCDIGQAQS--RAQLLVQ--GRRSGPS 101
Score = 42.7 bits (101), Expect = 2e-05
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 31 KNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPG 90
K +++ + + + + + I + K D+ YT G + + G
Sbjct: 43 KGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTC----DIGQAQSRAQLLVQGRRS 98
Query: 91 PP 92
P
Sbjct: 99 GP 100
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 92.9 bits (231), Expect = 6e-23
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 2/94 (2%)
Query: 482 PDPPQF-PTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
P P ++S L W+ P YI+E + + V + T
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYVGKETMCT 68
Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ GL Y RV A N G S S T L T+
Sbjct: 69 VDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTS 102
Score = 89.4 bits (222), Expect = 1e-21
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
+P PI L+ ++ TL W P Y++E D + + + +T
Sbjct: 8 PVPATPILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFREV-YVGKET 65
Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
V GL Y V A N+ G+ P + + ++ G
Sbjct: 66 MCTVDGLHFNSTYNARVKAFNKTGVSPYSK---TLVLQTSEGSGPSSG 110
Score = 74.0 bits (182), Expect = 2e-16
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 183 AKSPYDKPSPPGI-PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV 241
+ S P+ P + + LSW +P GY ++ + ++ V V
Sbjct: 3 SGSSGPVPATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVYV 61
Query: 242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ + L Y RV A N+ G+S S
Sbjct: 62 --GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 97
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 92.4 bits (230), Expect = 7e-23
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 286 DPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG 345
++ E++ + + A F+C ++ K T W K E+ PS R I G
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVG 60
Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
+ L+I+ V D +Y S A+L +
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDGYAL--SLSAKLNFLEIKV 100
Score = 61.2 bits (149), Expect = 7e-12
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 1/83 (1%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
E V K + K WY++ + + R L I D D Y V
Sbjct: 23 AEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFV 81
Query: 463 AENDLGMDSAIVKIQISDRPDPP 485
+ SA + P
Sbjct: 82 PDGYALSLSAKLNFLEIKVSGPS 104
Score = 50.8 bits (122), Expect = 4e-08
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
L + + K + ++ KNG V+ R + + + + I ++R ED G
Sbjct: 18 LTVKAAEQAVFKCEVSDEKV-TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEG 76
Query: 65 DYTVNLSNSSGSVSGTFTINITGLPGPPIG 94
DYT + S+S + GP G
Sbjct: 77 DYTFVPDGYALSLSAKLNFLEIKVSGPSSG 106
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 92.4 bits (230), Expect = 8e-23
Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
++ L++ ++ A +C ++ P + W G+ + P ++ + EG
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAML 63
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
L++ ++ D+ Y C G ++T A L + P
Sbjct: 64 ELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98
Score = 55.8 bits (135), Expect = 6e-10
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 391 PPRF----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAIL 446
P RF +D +G ++ + P + W N V+ G + + L
Sbjct: 8 PVRFQEALKDL-EVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLEL 65
Query: 447 TIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
+R+ D+ Y + SA + + P P
Sbjct: 66 VVRNLRPQDSGRYSCSFGDQTT--SATLTVT--ALPSGP 100
Score = 50.0 bits (120), Expect = 5e-08
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 22 DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81
V V++ D++ + + ++ +R +D+G Y+ S G + +
Sbjct: 34 SVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSC----SFGDQTTSA 89
Query: 82 TINITGLPGPP 92
T+ +T LP P
Sbjct: 90 TLTVTALPSGP 100
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 98.5 bits (244), Expect = 8e-23
Identities = 38/308 (12%), Positives = 77/308 (25%), Gaps = 18/308 (5%)
Query: 2 PNALYIPEGDNTKV-----KIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIK 56
+A + GD + D ++ + + + + II +
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLP 66
Query: 57 EIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYD 116
+ A +S + + P P + +T + W P +
Sbjct: 67 HLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGP-E 125
Query: 117 GGLKVTHYVVERRDISMPHWIC-------ISTTCHDTTFIVQGLTEGQEYLFHVMAVNEN 169
L + + + + + L Q V A N
Sbjct: 126 THLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENAL 185
Query: 170 GMG---PPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI 226
G + P + P + LSW+ + +
Sbjct: 186 GTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK-CEL 244
Query: 227 D-KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
K + G +W V Q + L+ Y ++ S S S++++
Sbjct: 245 RHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304
Query: 286 DPMAAKAP 293
A AP
Sbjct: 305 TTERAAAP 312
Score = 70.0 bits (170), Expect = 3e-13
Identities = 42/286 (14%), Positives = 68/286 (23%), Gaps = 21/286 (7%)
Query: 309 NAQFQCTITGC-----PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
C I P+P I W G+ + + + + + A
Sbjct: 17 PITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLS 76
Query: 364 VCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWY 423
+ EL P P T P
Sbjct: 77 CSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKS 136
Query: 424 RD---NEVIESGGHFHVETSERHAILTIRDASNVDTAPY--RVVAENDLGM-DSAIVKIQ 477
N + + + +I + V AEN LG S + +
Sbjct: 137 FKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLD 196
Query: 478 ISD--RPDPPQFPTVEDIGH------DSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
D + +PP T++ L L W N + K + +SW
Sbjct: 197 PMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWA 256
Query: 530 RVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
VG + GL P Y ++ S S +
Sbjct: 257 LVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLE 302
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 91.7 bits (228), Expect = 2e-22
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 268 NEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWL 327
+ S +SA +V+ A + LRN A + A +C ++ + W
Sbjct: 2 SSGS-SGRTSAMLTVR------ALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWW 52
Query: 328 KGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
KG + RH + +G L I + DA EY+C G + T A L + P
Sbjct: 53 KGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMP 107
Score = 62.8 bits (153), Expect = 2e-12
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 10/119 (8%)
Query: 369 NKGGVKSTKAELIIM-TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
+ G T A L + KF R + +G V++ + + W++ +E
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLR--NE-EATEGATAVLRCELSK--MAPVEWWKGHE 56
Query: 428 VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
+ G + L IR D Y + G + + + P P
Sbjct: 57 TLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPS 111
Score = 48.1 bits (115), Expect = 3e-07
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
V K ++ DR + I+ + EDAG+Y G + + +
Sbjct: 48 PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLC----MCGKERTSAMLTV 103
Query: 86 TGLPGPP 92
+P P
Sbjct: 104 RAMPSGP 110
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 91.6 bits (228), Expect = 2e-22
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
PD + P V + W P+ G+++T Y +E S + I
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVE-GSMQICYCGPGLSYEI 65
Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
GLSP Y RV A +V G S +T
Sbjct: 66 KGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 98
Score = 80.8 bits (200), Expect = 1e-18
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
+ P P V+ + ++W P G VT Y +E + IC
Sbjct: 5 SSGPDQC-KPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGVEGSMQICYCGP--G 60
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
++ ++GL+ Y V A++ G GP E + + S S P
Sbjct: 61 LSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPS-----SGPS 104
Score = 73.5 bits (181), Expect = 3e-16
Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
P P VT ++W+ P G+ + Y ++ V
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGVEGSMQICYCGPG---LSY 63
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
I L Y RV A + G S V
Sbjct: 64 EIKGLSPATTYYCRVQALSVVGAGPFSEVVACV 96
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 91.5 bits (227), Expect = 2e-22
Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 15/107 (14%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS-WIRVGNT------ 534
PP P V + +S+ L W P + G I + V+ R W +
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 535 -------RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ T ++T L P H Y FR+ A + S TS
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
Score = 85.4 bits (211), Expect = 3e-20
Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 14/113 (12%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG-SDAWQRVNVAI----- 243
PP P VT++ + V L W P + G I + + VG WQ N I
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 244 ------CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
++ +L Y FR+ A + S+ S ++ P AA
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ-PGAA 113
Score = 80.3 bits (198), Expect = 2e-18
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR-------------DISM 133
G PP P +V+ ++ + L W P+ + GL + + V+ R +I
Sbjct: 1 GSTYPP-TPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 134 PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
S T V L Y F ++AV N
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 99
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 91.3 bits (227), Expect = 2e-22
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDT 347
++ I L+ ++ + F+C ++ W G + + S+R +G
Sbjct: 5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRK 64
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
Y L++ DA E V ++KA LI+
Sbjct: 65 YILVVREAAPSDAGEVVFSVRG----LTSKASLIVRERSG 100
Score = 58.9 bits (143), Expect = 4e-11
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 403 GENVVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
GE+ + + W + + S F R IL +R+A+ D
Sbjct: 23 GESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVF 82
Query: 462 VAENDLGMDSAIVKIQISDRPDPPQ 486
S IV+ +R P
Sbjct: 83 SVRGLTSKASLIVR----ERSGPSS 103
Score = 50.1 bits (120), Expect = 5e-08
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
T G+ V S RF+ T I+ ++E DAG+ S ++
Sbjct: 34 HESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVF----SVRGLTS 89
Query: 80 TFTINITGLPGPPIG 94
++ + GP G
Sbjct: 90 KASLIVRERSGPSSG 104
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 90.9 bits (226), Expect = 3e-22
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
+ +I+ PL + +C I+ W K + S R + +G +
Sbjct: 4 GSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIH 61
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
L+I + D +YV + A++ +++ P
Sbjct: 62 KLVIANALTEDEGDYVF--APDAYNVTLPAKVHVISGP 97
Score = 55.0 bits (133), Expect = 8e-10
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 10/101 (9%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
K P D + G+ + +K + W ++ ++ V R
Sbjct: 7 GLKILTPLT--DQ-TVNLGKEICLKCEISE--NIPGKWTKNGLPVQESDRLKVVQKGRIH 61
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
L I +A D Y + A V + P
Sbjct: 62 KLVIANALTEDEGDYVFAPDAYNVTLPAKVHVI-----SGP 97
Score = 47.3 bits (113), Expect = 5e-07
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
+ G +K + + P TKNG VQ DR K + I ED G
Sbjct: 17 QTVNLGKEICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEG 74
Query: 65 DYTVNLSNSSGSVSGTFTINITGLPG 90
DY + + +V+ +++ P
Sbjct: 75 DYVF--APDAYNVTLPAKVHVISGPS 98
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 90.9 bits (226), Expect = 3e-22
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
++ L+ A + A QC ++ + W KG + R+ + +G
Sbjct: 5 SSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRC 62
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
L I+ + DA EY C G + T A L + P
Sbjct: 63 ELQIHDLSVADAGEYSCMC----GQERTSATLTVRALP 96
Score = 52.4 bits (126), Expect = 1e-08
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
+F + T +G ++ + + W + E + GG + ++
Sbjct: 8 PARFTQDLK---TKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRC 62
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
L I D S D Y + + SA + ++ P +F
Sbjct: 63 ELQIHDLSVADAGEYSCMCGQERT--SATLTVR----ALPARF 99
Score = 41.2 bits (97), Expect = 7e-05
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 24 PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83
V K ++ R+ + I ++ DAG+Y+ G + T+
Sbjct: 35 VAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSC----MCGQERTSATL 90
Query: 84 NITGLP 89
+ LP
Sbjct: 91 TVRALP 96
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 93.4 bits (232), Expect = 4e-22
Identities = 28/209 (13%), Positives = 55/209 (26%), Gaps = 31/209 (14%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGDTY--- 348
+ N + +C + P + WL+ + + +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 349 ------TLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFD 401
L I S+ D +Y C S + + P F P D
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPE--DRTV-A 119
Query: 402 KGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
+ G P+P + W +D + + ++ T+ +
Sbjct: 120 ANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA-------PGHGPQRSLHVPGLNKTSSFS 172
Query: 461 VVAENDLGM---DSAIVKIQISDRPDPPQ 486
A N G+ +A + + P Q
Sbjct: 173 CEAHNAKGVTTSRTATITVL------PQQ 195
Score = 68.4 bits (167), Expect = 2e-13
Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 31/215 (14%)
Query: 184 KSPYDKPSPPGIPVV----TQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
+P + G+ QV G+ + W + G ++ D + +
Sbjct: 7 GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLR----DGQILELA--DSTQTQVPLGEDE 60
Query: 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL 299
SQ+ I +L +++ + ++ P +
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-------LPYFLEEP 113
Query: 300 RNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
+ N C G P+P + WL+ + + + H G +L + +
Sbjct: 114 EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGL--N 166
Query: 359 DADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
+ C A N GV +++ I + +P +
Sbjct: 167 KTSSFSCEAHNAKGVTTSRTATITV------LPQQ 195
Score = 46.4 bits (110), Expect = 6e-06
Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 17/118 (14%)
Query: 391 PPRFR---DTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESG---------GHFHV 437
F +G ++ P++ W RD +++E G
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPD---PPQFPTVE 491
+ + L I DT Y+ + S + + P P+ TV
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVA 119
Score = 39.5 bits (92), Expect = 0.001
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF---------IKEIRKEDAGDYTVNL 70
+P EV ++G++++ D + V I ++ D G Y +
Sbjct: 28 VQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV 87
Query: 71 SNSSGS-VSGTFTINITGLP 89
+ VS + + GLP
Sbjct: 88 FLGHQTFVSQPGYVGLEGLP 107
Score = 27.9 bits (62), Expect = 7.8
Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 23 QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTF 81
+P+++ ++ + + + ++ N+ G S T
Sbjct: 135 EPVDLLWLQDAVPLATAPG-------HGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTA 187
Query: 82 TINI 85
TI +
Sbjct: 188 TITV 191
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 89.3 bits (222), Expect = 9e-22
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
++ II PL + + + +C ++ P + WLK + I S ++ + EG
Sbjct: 5 SSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMA 63
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
L+I DA EY C + A L +
Sbjct: 64 MLVIRGASLKDAGEYTCEVEA----SKSTASLHV 93
Score = 62.3 bits (152), Expect = 3e-12
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 391 PPRF----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAIL 446
P D + GE+V ++ + P + W +D + I + V A+L
Sbjct: 8 PAAIIKPLEDQ-WVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65
Query: 447 TIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
IR AS D Y E +A + ++ ++ P
Sbjct: 66 VIRGASLKDAGEYTCEVEASKS--TASLHVE--EKASGP 100
Score = 48.1 bits (115), Expect = 3e-07
Identities = 11/88 (12%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
++ G++ +++ + V K+ + ++ ++ ++ I+ +DAG
Sbjct: 18 QWVAPGEDVELRCELSRA-GTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAG 76
Query: 65 DYTVNLSNSSGSVSGTFTINITGLPGPP 92
+YT + S + ++++ P
Sbjct: 77 EYTCEVEASKST----ASLHVEEKASGP 100
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 88.5 bits (220), Expect = 1e-21
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
A E+ PL A F+ ++ P W + + S I +G +
Sbjct: 2 AMALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKH 60
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
LI+++ E +A N + A L +
Sbjct: 61 ILILHNCQLGMTGEVSFQAAN----TKSAANLKV 90
Score = 55.8 bits (135), Expect = 4e-10
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
M + P + GE +I + P W + + + + +
Sbjct: 3 MALIEVEKPLYGVEVF---VGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGK 58
Query: 443 HAILTIRDASNVDTAPYRVVAEND 466
IL + + T A N
Sbjct: 59 KHILILHNCQLGMTGEVSFQAANT 82
Score = 42.3 bits (100), Expect = 3e-05
Identities = 4/51 (7%), Positives = 16/51 (31%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS 76
G+ + + + I+ + + G+ + +N+ +
Sbjct: 35 HGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSA 85
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 94.8 bits (235), Expect = 1e-21
Identities = 38/239 (15%), Positives = 66/239 (27%), Gaps = 33/239 (13%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQC------TITGC 319
+N + L S +P + I + + C
Sbjct: 81 VRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQK---LPVAGDGGLVCPYMEFFKNENN 136
Query: 320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS---T 376
P + W K + + H + LI+ +V Y C A K T
Sbjct: 137 ELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193
Query: 377 KAELIIMTAPKFNVPPRF----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG 432
+ I P +T D G + + TG W + VI+
Sbjct: 194 RVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED 253
Query: 433 GHFHVE------------TSERHAILTIRDASNVDTA-PYRVVAENDLGMDSAIVKIQI 478
E S +L I + + P+ A+N G+D+A +++
Sbjct: 254 DPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 90.2 bits (223), Expect = 5e-20
Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 21/194 (10%)
Query: 310 AQFQCTITGCP-KPTISWLK--GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
C + K TI+W K ++ I + L D+ Y C
Sbjct: 23 DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCV 80
Query: 367 AVNKGGVKSTKAEL-IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT------GYPKPK 419
N K + P + + + P+ PK
Sbjct: 81 VRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK 140
Query: 420 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS------AI 473
+ WY+D + + +R L + + + Y A
Sbjct: 141 LQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197
Query: 474 VKIQISDRPDPPQF 487
++P P
Sbjct: 198 FITLEENKPTRPVI 211
Score = 47.4 bits (112), Expect = 7e-06
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
Query: 403 GENVVVKIPFTGYP-KPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
E V P K ITWY+D+ + L A D+ Y
Sbjct: 20 NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 79
Query: 462 VAENDLGMDSAIVKIQISDRPDPPQFP 488
V N + + + +
Sbjct: 80 VVRNSSYCLRIKISAKFVENEPNLCYN 106
Score = 38.6 bits (89), Expect = 0.004
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
++ ++ K+ + + D+ F+ + D +I+ + ++ G+YT + S +
Sbjct: 134 ENNELPKLQWYKDCKPLLLDNI-HFSGVKDRLIV--MNVAEKHRGNYTCHASYTYLGKQY 190
Query: 80 TFTINIT 86
T I
Sbjct: 191 PITRVIE 197
Score = 37.4 bits (86), Expect = 0.010
Identities = 9/84 (10%), Positives = 21/84 (25%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
+ ++ K+ + ++ + ED+G Y + NSS +
Sbjct: 31 PNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI 90
Query: 80 TFTINITGLPGPPIGPLDVSEITK 103
+ K
Sbjct: 91 KISAKFVENEPNLCYNAQAIFKQK 114
Score = 30.5 bits (68), Expect = 1.6
Identities = 12/75 (16%), Positives = 18/75 (24%), Gaps = 13/75 (17%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRF------------KFTVLDDYIIIFIKEIRKED-AGDYT 67
G NG V+ DD ++ I EI +T
Sbjct: 235 GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFT 294
Query: 68 VNLSNSSGSVSGTFT 82
N+ G +
Sbjct: 295 CFAKNTHGIDAAYIQ 309
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 89.1 bits (221), Expect = 2e-21
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 2/109 (1%)
Query: 182 KAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV 241
+A++ +PSPP I G LS DDGG+ I Y + +
Sbjct: 1 EAEASMREPSPPSIHG-QPSSGKSFKLSI-TKQDDGGAPILEYIVKYRSKDKEDQWLEKK 58
Query: 242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
I + +L YE ++ A N G S P+ S+ K +
Sbjct: 59 VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIK 107
Score = 87.2 bits (216), Expect = 6e-21
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT--RFT 537
P PP + S L DGG+ I YIV+ R
Sbjct: 7 REPSPPSIH-GQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD 64
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ + L YE ++ A N G S+P+ +
Sbjct: 65 HIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPP 101
Score = 84.5 bits (209), Expect = 5e-20
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 4/99 (4%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-ICISTTCHDTT 147
P PP + + + L DGG + Y+V+ R + +
Sbjct: 9 PSPPS--IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDH 65
Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
I++ L Y + A N G P + K
Sbjct: 66 IILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPN 104
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 93.6 bits (232), Expect = 2e-21
Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 20/217 (9%)
Query: 277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS 336
++S V ++DP ++ + ++ +A +C +T S ++ + P+
Sbjct: 81 TSSIYVFVRDP-----AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPT 135
Query: 337 ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFR 395
+ T I N C A G + S K L + A K P
Sbjct: 136 DLTFVPNPKAGIT-IKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKA--IPVVS 192
Query: 396 DTA---YFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETS-------ERHA 444
KG+ V W + N + + ER
Sbjct: 193 VPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQE 252
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
LTI A D+ + A N G + +++ ++
Sbjct: 253 TLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 72.5 bits (177), Expect = 3e-14
Identities = 22/207 (10%), Positives = 48/207 (23%), Gaps = 21/207 (10%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
P P I C + W + + E
Sbjct: 7 PGEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYF-------NEMVENK 55
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV 406
I Y C N + + + K + + + +
Sbjct: 56 KNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGL---PLFGKEDSDA 109
Query: 407 VVKIPFTGYPKPKITWYR-DNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
+V+ P T + + D + + + F + + I R A+
Sbjct: 110 LVRCPLTDPQVSQYSLIECDGKSLPTDLTFVP--NPKAGITIKNVKRAYHRLCVRCAAQR 167
Query: 466 DLG-MDSAIVKIQISDRPDPPQFPTVE 491
D + S +++ + +V
Sbjct: 168 DGTWLHSDKFTLKVREAIKAIPVVSVP 194
Score = 37.4 bits (86), Expect = 0.011
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 2 PNALYIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTV-------LDDYIII 53
+ + +GD V + K Q + K + +
Sbjct: 195 ETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETL 254
Query: 54 FIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
I R +D+G + +N+ GS + T T+ +
Sbjct: 255 TISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 91.2 bits (226), Expect = 3e-21
Identities = 24/185 (12%), Positives = 48/185 (25%), Gaps = 24/185 (12%)
Query: 310 AQFQCTITGCPKPTISWLKGSREITP-----------------SARHHIFAEGDTYTLII 352
+ ++ P+ +SW K I +T+ L++
Sbjct: 12 TSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVV 71
Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF 412
+ Y+CR + + L ++ +V F + V
Sbjct: 72 TAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS---QFPDFSVLTVTCTV 128
Query: 413 TGYPKPKITWYRDNEVIES----GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
+P P + W V + G E ++ P V +ND
Sbjct: 129 NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188
Query: 469 MDSAI 473
+
Sbjct: 189 EAHGV 193
Score = 60.4 bits (146), Expect = 1e-10
Identities = 11/84 (13%), Positives = 19/84 (22%), Gaps = 4/84 (4%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT----PSARHHIFAEGDTY 348
+ V + CT+ P P + WL + +G
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
Query: 349 TLIINSVYGVDADEYVCRAVNKGG 372
+ S+ C N
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKE 188
Score = 31.2 bits (70), Expect = 0.67
Identities = 4/55 (7%), Positives = 13/55 (23%)
Query: 55 IKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
+ G+Y + V+ +++ + T+
Sbjct: 71 VTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125
Score = 29.6 bits (66), Expect = 1.9
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 52 IIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81
+ + K T N G +
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEEAHGVY 194
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 93.7 bits (232), Expect = 5e-21
Identities = 27/230 (11%), Positives = 50/230 (21%), Gaps = 27/230 (11%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPTI 324
+ G + + ++ K P I + C I I
Sbjct: 109 VTTKNGDCVQGIVRSHIR-------KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI 161
Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 384
+W K ++E+ + + LII++ D+ Y C +
Sbjct: 162 TWYKNNQELIIDGTKYSQSGQ---NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCK 218
Query: 385 APKFNVPPRFRDTAYFDK------GENVVVKIPFTGYPKPK----ITWYRDNEVIESGGH 434
R D GE + I W + I
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278
Query: 435 FHVETSERH-----AILTIRDASNVDT-APYRVVAENDLGMDSAIVKIQI 478
A L + + Y N + + +
Sbjct: 279 GVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 77.2 bits (189), Expect = 1e-15
Identities = 30/212 (14%), Positives = 52/212 (24%), Gaps = 23/212 (10%)
Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPK---------PTISWLKGSREITPSARHHIFAEG 345
+ N A +C ++W K + P R
Sbjct: 32 MFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK---- 87
Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGE 404
+ I N Y+C K G I P
Sbjct: 88 NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETY---ELGTHDKY 144
Query: 405 NVVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 463
+ + ITWY++N+ + G + ++ + L I + D+ Y
Sbjct: 145 GIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN---LIIHNPELEDSGRYDCYV 201
Query: 464 ENDLG--MDSAIVKIQISDRPDPPQFPTVEDI 493
D + +V P Q + I
Sbjct: 202 HYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI 233
Score = 56.0 bits (134), Expect = 1e-08
Identities = 20/128 (15%), Positives = 31/128 (24%), Gaps = 12/128 (9%)
Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-- 322
Y + S + + + I+ P N A CT
Sbjct: 203 YDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP--KINVTIGEPANITCTAVSTSLLVD 260
Query: 323 --TISWLKGSREITPSARHHIFAEGD-----TYTLIINSVYGVDA-DEYVCRAVNKGGVK 374
I W S I TL +V + Y CR N K
Sbjct: 261 DVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK 320
Query: 375 STKAELII 382
+ +++
Sbjct: 321 TLTTTVVL 328
Score = 44.0 bits (103), Expect = 7e-05
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 4/87 (4%)
Query: 1 MPNALYIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR 59
L + + ++ KN + + D K++ +II
Sbjct: 134 ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-KYSQSGQNLII--HNPE 190
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINIT 86
ED+G Y + + ++
Sbjct: 191 LEDSGRYDCYVHYDDVRIKNDIVVSRC 217
Score = 31.3 bits (70), Expect = 0.74
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 18 FYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS- 76
D+ V+ K G+ + +R + + + + Y ++ +G
Sbjct: 61 HRYNDKDNVVNWEKIGKTRRPLNRR----VKNGDLWIANYTSNDSHRRYLCTVTTKNGDC 116
Query: 77 VSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT 122
V G +I P ++ K+ L+ +T
Sbjct: 117 VQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNIT 162
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 87.9 bits (218), Expect = 5e-21
Identities = 26/111 (23%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIFAEG 345
++ P I N + C TG P PTI W K ++ +R G
Sbjct: 3 SGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG 62
Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 396
L I D Y C A G + A + + PPR D
Sbjct: 63 ---VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110
Score = 62.1 bits (151), Expect = 4e-12
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIE-SGGHFHVETSERH 443
P P + A V+ TG P P I W +D ++ +
Sbjct: 8 PPVIRQGPVNQTVA---VDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN--- 61
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
+L IR A DT Y +A G + I++ + P Q P
Sbjct: 62 GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP 106
Score = 43.2 bits (102), Expect = 2e-05
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 30 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
K+G +V + D + L++ ++ I+ + D G YT S SG + + I +
Sbjct: 43 RKDGVLVSTQDS-RIKQLEN-GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG 100
Query: 90 GPPIGPLDVS 99
P P
Sbjct: 101 VPVQPPRPTD 110
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 87.5 bits (217), Expect = 7e-21
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 180 PIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
S PS P V V FV LSW P + G+ IQ + + G + + +
Sbjct: 8 KPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGN-IQTFTVFFSREGDNRERAL 66
Query: 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
N Q+ + NL Y FRV A NE G S
Sbjct: 67 NTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPI 106
Score = 86.3 bits (214), Expect = 2e-20
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 3/107 (2%)
Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
S P P+ + + L WR P + NI + V +
Sbjct: 6 SGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPA-EAKGNIQTFTVFFSREGDNRER 64
Query: 530 RVGNTRF--TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ T+ + + L P Y FRV A N +G + S + T
Sbjct: 65 ALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ 111
Score = 82.1 bits (203), Expect = 5e-19
Identities = 29/123 (23%), Positives = 42/123 (34%), Gaps = 6/123 (4%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
SSGS + + LP P + ++ L W PP G + + V
Sbjct: 2 SSGSSGKPAIPSSSVLPSAPRD-VVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREG 59
Query: 133 MPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
++TT V L Y F V+A NE G G + PIK + +
Sbjct: 60 DNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQ---PIKVATQPESGP 116
Query: 192 PPG 194
G
Sbjct: 117 SSG 119
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 86.5 bits (214), Expect = 2e-20
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
SSGS ++ P PP ++ + T T+HW ++ Y ++ +
Sbjct: 2 SSGSSGEG--LDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFT 56
Query: 133 MP----------HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
I + V GL G Y+F V A+N+ G
Sbjct: 57 GQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTN 116
Query: 183 AKSPYDKPS 191
++ PS
Sbjct: 117 SQPFKSGPS 125
Score = 86.5 bits (214), Expect = 2e-20
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 470 DSAIVKIQISDRPDPPQF-PTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS- 527
S+ + P+PP + HD++ + W + +I++Y ++ +
Sbjct: 4 GSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQAN 60
Query: 528 ----------WIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
W+ V N + + GL G +Y F V A N G + T +
Sbjct: 61 FISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNS 117
Score = 66.5 bits (162), Expect = 2e-13
Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 17/118 (14%)
Query: 182 KAKSPYDKPSPP-GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGY-----------WIDKH 229
+ P+PP + D + + W I Y
Sbjct: 8 EGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISL 64
Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
D+W V + + L G +Y F V A N+AG +
Sbjct: 65 YNSVDSWMIVPN--IKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPF 120
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 85.1 bits (211), Expect = 2e-20
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
P R+ A F+ + W +G +I+ S ++ + EG
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGT 61
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+TL + V D Y A G K +L +
Sbjct: 62 RHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
Score = 53.1 bits (128), Expect = 4e-09
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
F+ PR + G V + K+ W R I + + + T
Sbjct: 9 SAFSKKPR---SVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHT 64
Query: 446 LTIRDASNVDTAPYRVVAEND 466
LT+R+ D Y V+A +
Sbjct: 65 LTVREVGPADQGSYAVIAGSS 85
Score = 42.7 bits (101), Expect = 2e-05
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 24 PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83
++V + G + + +++ + ++E+ D G Y V +GS F +
Sbjct: 36 GVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAV----IAGSSKVKFDL 91
Query: 84 NIT 86
+
Sbjct: 92 KVI 94
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 88.6 bits (219), Expect = 3e-20
Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 34/214 (15%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPT----ISWLKGSREITPSARHHIFAEGDTY- 348
I P + + A C T P+ I WL + + I GD
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 349 -----------------------TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
++ + ++ D Y C+ GV + K L ++
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 386 PKFNVPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
P R + G + +K P G + W + ++ + E +
Sbjct: 122 PSG---TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT--SP 176
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
++++++AS+ + Y +N +G D ++++ +
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 63.6 bits (154), Expect = 1e-11
Identities = 23/187 (12%), Positives = 48/187 (25%), Gaps = 20/187 (10%)
Query: 207 NLSWDKPLDDGGSRIQGYWI-----DKHEVGSDAWQRVNVAICAPSQ----INIPNLIEG 257
++ W D Q + D RV+ IN+ NL
Sbjct: 35 DIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS 94
Query: 258 RQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT 317
++ + G ++ + + P + + ++ + +C
Sbjct: 95 DIGTYQCKVKKAPG---VANKKFLLTVLVK-----PSGTRCFVDGSEEIGNDFKLKCEPK 146
Query: 318 -GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST 376
G W K S T + + + + Y C N+ G
Sbjct: 147 EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--ISVKNASSEYSGTYSCTVQNRVGSDQC 204
Query: 377 KAELIIM 383
L ++
Sbjct: 205 MLRLDVV 211
Score = 44.7 bits (105), Expect = 3e-05
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 8 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT 67
+ + + ++ GRV + + V I + ++ D G Y
Sbjct: 45 NQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSND----VKSGDASINVTNLQLSDIGTYQ 100
Query: 68 VNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH-----WNPP 113
+ + G + F + + P +D SE + L + P
Sbjct: 101 CKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLP 151
Score = 37.7 bits (87), Expect = 0.006
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 30/125 (24%)
Query: 402 KGENVVVKIPFTGYPKPK----ITWYRDNEVIESGGHFHV-------------------- 437
KGE + FT P+ + I W + +
Sbjct: 14 KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVH 73
Query: 438 ----ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP--TVE 491
+ A + + + D Y+ + G+ + + + +P + E
Sbjct: 74 FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSE 133
Query: 492 DIGHD 496
+IG+D
Sbjct: 134 EIGND 138
Score = 36.2 bits (83), Expect = 0.018
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
G P++ K + + I + K E +G Y+ + N GS
Sbjct: 148 GSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV--KNASSEYSGTYSCTVQNRVGSDQCM 205
Query: 81 FTINITG 87
+++
Sbjct: 206 LRLDVVP 212
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 85.9 bits (213), Expect = 3e-20
Identities = 31/131 (23%), Positives = 42/131 (32%), Gaps = 6/131 (4%)
Query: 163 VMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ 222
+ G G P PI ++ D P PP + +V V L W P G I
Sbjct: 3 SGSSGRIGDGSPSH--PPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IIL 59
Query: 223 GYWIDKHEVGSDA-WQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
Y I + A V V + Q L Y FR+ AQ G + A
Sbjct: 60 AYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVV 119
Query: 282 V--QIKDPMAA 290
+ P +
Sbjct: 120 TTEKRSGPSSG 130
Score = 71.3 bits (175), Expect = 3e-15
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 8/121 (6%)
Query: 461 VVAENDLGM---DSAIVKIQ-ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNY 516
+ +G + + + D P PP ++ S+ L+W+ P G I Y
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAY 61
Query: 517 IVEKREH---PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
+ R + ++ + V TGL P Y FR+ A+ G + + + T
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121
Query: 574 T 574
Sbjct: 122 E 122
Score = 68.2 bits (167), Expect = 5e-14
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI--SMPHWICISTTCH 144
+PGPP+G + E+ + L W PP G+ + Y + R +
Sbjct: 26 DVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNGI-ILAYQITHRLNTTTANTATVEVLAPS 83
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
+ GL YLF + A G G E + +K S P
Sbjct: 84 ARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT-----EKRSGP 127
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 90.1 bits (223), Expect = 3e-20
Identities = 43/301 (14%), Positives = 75/301 (24%), Gaps = 41/301 (13%)
Query: 191 SPPGIPVVTQVGGDFV-------NLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI 243
+PPG +V V FV + W++ Q + S
Sbjct: 4 TPPGPELVLNVSSTFVLTCSGSAPVVWERM---SQEPPQEMAKAQDGTFS---------- 50
Query: 244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNAN 303
S + + NL E+ + GL + + DP P
Sbjct: 51 ---SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEE-LFIF 106
Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
+ C +T P+ ++ + ++ Y + Y
Sbjct: 107 LTEITEITIPCRVTD-PQLVVTLHEKKGDVALPV---------PYDHQRGFSGIFEDRSY 156
Query: 364 VCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITW 422
+C+ V S + + NV T +GEN+ + G W
Sbjct: 157 ICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVV-RQGENITLMCIVIGNEVVNFEW 215
Query: 423 YRDNEVIESG-----GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477
+ +IL I A D+ Y + I
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
Query: 478 I 478
I
Sbjct: 276 I 276
Score = 36.2 bits (83), Expect = 0.021
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-----IK 56
+ +G+N + G++ + T + L D I
Sbjct: 188 AVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIP 247
Query: 57 EIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPI 93
ED+G YT N++ S INIT +
Sbjct: 248 SAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHH 284
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 87.0 bits (215), Expect = 6e-20
Identities = 27/191 (14%), Positives = 52/191 (27%), Gaps = 23/191 (12%)
Query: 298 PLRNANAIQNHNAQFQCTITGCPKPTIS--WLKGSREITPSARHHIFAEGDTYTLIINSV 355
+ C++ WLKG +
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED-------ALPGQKTEFKVD 56
Query: 356 YGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY 415
EY C + + + + + P+ GE ++
Sbjct: 57 SDDQWGEYSCVFLPEPMGTAN---IQLHGPPRVKAVKSSEHINE---GETAMLVCKSESV 110
Query: 416 PKP-KITWYRDNEVIE------SGGHFHVETSERHAILTIRDAS-NVDTAPYRVVAENDL 467
P WY+ + + S F V +S+ + L I + + D YR +
Sbjct: 111 PPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSK 170
Query: 468 GMDSAIVKIQI 478
G D AI+ +++
Sbjct: 171 GSDQAIITLRV 181
Score = 62.4 bits (151), Expect = 2e-11
Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 18/141 (12%)
Query: 255 IEGRQYEFRVYAQNEAGL-----SLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHN 309
+ G++ EF+V + ++ G + ++Q+ P P + + + +
Sbjct: 46 LPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGP-----PRVKAVKSSEHINEGET 100
Query: 310 AQFQCTITGCPKPT-ISWLKGSREITP------SARHHIFAEGDTYTLIINSV-YGVDAD 361
A C P T +W K + +R + + L I ++ D
Sbjct: 101 AMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG 160
Query: 362 EYVCRAVNKGGVKSTKAELII 382
+Y C + G L +
Sbjct: 161 QYRCNGTSSKGSDQAIITLRV 181
Score = 31.5 bits (71), Expect = 0.42
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 1 MPNALYIPEGDNTKVKIFYAGD-QPMEVSLTKNGRVVQ------SDDRFKFTVLDDYIII 53
+ ++ +I EG+ + + + K S+ RF + +
Sbjct: 89 VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSEL 148
Query: 54 FIKEI-RKEDAGDYTVNLSNSSGSVSGTFTINI 85
I+ + + D G Y N ++S GS T+ +
Sbjct: 149 HIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 30.0 bits (67), Expect = 1.3
Identities = 16/88 (18%), Positives = 23/88 (26%), Gaps = 14/88 (15%)
Query: 30 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
K G V+ +D + K + G+Y+ GT I + G P
Sbjct: 35 LKGGVVL-KEDALPGQKTE------FKVDSDDQWGEYSCVFLPEPM---GTANIQLHGPP 84
Query: 90 GPPIGPLDVSEITKHT----CTLHWNPP 113
T C PP
Sbjct: 85 RVKAVKSSEHINEGETAMLVCKSESVPP 112
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 83.5 bits (207), Expect = 9e-20
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 9/99 (9%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS----ARHHIFA 343
++ I+ PL + + ++ + W+K E+T AR+
Sbjct: 4 GSSGPVLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKK 62
Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+G + LI + V D Y +AELI+
Sbjct: 63 DGKRHILIFSDVVQEDRGRYQVITNG----GQCEAELIV 97
Score = 47.3 bits (113), Expect = 5e-07
Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 14/88 (15%)
Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFT---GYPKPKITWYRDNEVIESG----GHFHVE 438
P + G+ V ++ W ++ + + +
Sbjct: 9 VLIVTPLEDQQVF---VGDRVE----MAVEVSEEGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 439 TSERHAILTIRDASNVDTAPYRVVAEND 466
+ IL D D Y+V+
Sbjct: 62 KDGKRHILIFSDVVQEDRGRYQVITNGG 89
Score = 36.9 bits (86), Expect = 0.002
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 20 AGDQPMEVSLTKNGRVVQSDD----RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG 75
++ +V KNG + +D R++F I+ ++ +ED G Y V +
Sbjct: 32 VSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQC 91
Query: 76 S 76
Sbjct: 92 E 92
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 83.1 bits (206), Expect = 1e-19
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT--PSARHHIFAEGD 346
+ + L + A + +C ++ + W K EI P +R+ I EG
Sbjct: 4 GSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGK 62
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+ LII DA EY + A+L +
Sbjct: 63 KHILIIEGATKADAAEYSVMTTG----GQSSAKLSV 94
Score = 48.5 bits (116), Expect = 2e-07
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE-- 441
+ DT GE V ++ + + W+++ E I G
Sbjct: 6 SGIMVTKQLE--DTT-AYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG 61
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD 483
+ IL I A+ D A Y V+ SA + + + P
Sbjct: 62 KKHILIIEGATKADAAEYSVMTTGGQS--SAKLSVDLKSGPS 101
Score = 39.2 bits (92), Expect = 4e-04
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAG 64
G+ +++ + D V KNG + + ++ + + I+ I+ K DA
Sbjct: 19 AYCGERVELECEVSEDDA-NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAA 77
Query: 65 DYTVNLSNSSGSVSGTFTINITGLPGPPIG 94
+Y+V + S +++ GP G
Sbjct: 78 EYSVMTTGGQSSA----KLSVDLKSGPSSG 103
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 83.3 bits (206), Expect = 1e-19
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY-- 348
I L + +H+ T+ G PKP + W + S +
Sbjct: 2 HFAPTITFLESP--TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 349 ---TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 389
L +++ ++ +Y A N+ G + M P +
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103
Score = 82.5 bits (204), Expect = 2e-19
Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 389 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET-----SERH 443
+ P + + G PKP + W+ + ++ + + +E H
Sbjct: 2 HFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD 483
L + + ++++ Y ++A+N+ G D + P
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
Score = 48.2 bits (115), Expect = 2e-07
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 30 TKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 84
NG ++ + + + + + GDYT+ N G + +
Sbjct: 36 FYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
Query: 85 ITGLPG 90
G PG
Sbjct: 96 FMGWPG 101
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 82.9 bits (205), Expect = 2e-19
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 290 AKAPEIIVPLRNANAIQN----HNAQFQCTITGCPKPTISWLKGSREITPSARHHIF-AE 344
+AP + + + +F+C G P PT+ WLK +E R +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
++LI+ SV D Y C N+ G + L ++
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 64.8 bits (158), Expect = 4e-13
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 384 TAPKFNVPPRFRDTAYF-DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH-VETSE 441
AP + + + V + P G P P + W ++ + + +
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+H L + D Y V EN+ G + + +
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 45.1 bits (107), Expect = 3e-06
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 31 KNGRVVQSDDRFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
KNG+ + + R + V + + + ++ + D G+YT + N GS++ T+ +++
Sbjct: 44 KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 82.8 bits (205), Expect = 2e-19
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 290 AKAPEIIVPLRNANAIQ-NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
+ L A + +F + PK + W K +EI PS ++ +G
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
L IN+ D EY A G + EL + + P
Sbjct: 64 ILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGP 97
Score = 56.2 bits (136), Expect = 4e-10
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 391 PPRF----RDTAYFDKGENVV--VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
F DKG V V++ PK ++ WY++ + I + E
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL---ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63
Query: 445 ILTIRDASNVDTAPYRVVAEND 466
IL I + D + Y V A ++
Sbjct: 64 ILFINNCQMTDDSEYYVTAGDE 85
Score = 47.0 bits (112), Expect = 6e-07
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
+ A + +G + + A + EV KNG+ ++ ++ F I+FI +
Sbjct: 14 LDPAYQVDKGGRVRFVVELADPKL-EVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQM 72
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLP 89
D +Y V ++G + + + P
Sbjct: 73 TDDSEYYV----TAGDEKCSTELFVRSGP 97
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 82.8 bits (205), Expect = 2e-19
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
G ++ + P P + ++W+ P+ G IQ Y +
Sbjct: 1 GSSGSSG---RVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYM 56
Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
E G+D Q V+V+ I L + +Y FRV A N+ G + + + D
Sbjct: 57 EKGTDKEQDVDVSS---HSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDS 111
Score = 76.2 bits (188), Expect = 5e-17
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
LPGP L + + T+ W P G ++ +Y + + + +
Sbjct: 16 QLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVDVSS--H 71
Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
++ + GL + EY F V+A N++G G + ++ D G
Sbjct: 72 SYTINGLKKYTEYSFRVVAYNKHGPGVSTP---DVAVRTLSDSGPSSG 116
Score = 75.4 bits (186), Expect = 1e-16
Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 3/107 (2%)
Query: 468 GMDSAIVKIQIS-DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
S V+ Q P P S+ + W P+ G I NY + E
Sbjct: 3 SGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTD 61
Query: 527 SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
V + + I GL +Y FRV A N +G + + T
Sbjct: 62 KEQDV-DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 107
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 81.7 bits (202), Expect = 5e-19
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
+ R A +A C + + ++W K ++++ S++ + A G T L++
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+A EY C A G + L +
Sbjct: 71 QQAGQAEAGEYSCEA----GGQQLSFRLQV 96
Score = 55.5 bits (134), Expect = 7e-10
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES 431
G + +++ K P R+ + G + + + ++TWY+D + + S
Sbjct: 1 GSSGSSGKVVF---AKE--QPAHREVQ-AEAGASATLSCEVAQ-AQTEVTWYKDGKKLSS 53
Query: 432 GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477
VE L ++ A + Y A S +++
Sbjct: 54 SSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQL--SFRLQVA 97
Score = 43.9 bits (104), Expect = 8e-06
Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 66
G + + A Q EV+ K+G+ + S + + + + +++ + +AG+Y
Sbjct: 23 AEAGASATLSCEVAQAQT-EVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEY 81
Query: 67 TVNLSNSSGSVSGTFTINITG 87
+ +G +F + + G
Sbjct: 82 SCE----AGGQQLSFRLQVAG 98
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 81.7 bits (202), Expect = 6e-19
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 289 AAKAPEIIVP--LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
+ I+ P A++ C + P + W K E+ S + E
Sbjct: 8 TDVSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
L++ +V D+ EY+C +S + + P +
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPPVRIIYSG 109
Score = 58.6 bits (142), Expect = 7e-11
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
+ V P + + E VV+ P ++ W +D E + ++ +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDGEEVVESPALLLQKEDTVR 68
Query: 445 ILTIRDASNVDTAPYRVVAEND 466
L + D+ Y +++
Sbjct: 69 RLVLPAVQLEDSGEYLCEIDDE 90
Score = 47.1 bits (112), Expect = 7e-07
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
EV TK+G V D + + ++ ED+G+Y + S
Sbjct: 37 LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESA 92
Query: 80 TFTINITGLPGPPIGPLDVS 99
+FT+ +T P I S
Sbjct: 93 SFTVTVTEPPVRIIYSGPSS 112
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 86.7 bits (214), Expect = 8e-19
Identities = 26/235 (11%), Positives = 54/235 (22%), Gaps = 18/235 (7%)
Query: 259 QYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-T 317
Y + + ++ + LR + CT
Sbjct: 106 VYICEF----ATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN 161
Query: 318 GCPKPTISWLKGSREITPSARHHIFAEGDTY--TLIINSVYGVDADEYVCRAVNKGGVKS 375
G P +SW + T + C
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221
Query: 376 TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGH 434
L + P+ + D ++ + +V + P + W N + G
Sbjct: 222 ESLTLNVQYEPEVTIEG--FDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-- 277
Query: 435 FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPT 489
++ + + Y A N +G S V++ I+ +
Sbjct: 278 ---VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT---EAAALEH 326
Score = 62.5 bits (151), Expect = 9e-11
Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 15/129 (11%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQFQCTITGCPKPT- 323
S ++ ++ PE+ + +Q + + C P T
Sbjct: 213 VNYHMD---RFKESLTLNVQYE-----PEVTIEGFDGNWYLQRMDVKLTCKADANPPATE 264
Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
W + + A+ T + A Y+C A N G +S + E+ I
Sbjct: 265 YHWTTLNGSLPKGVE----AQNRT-LFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
Query: 384 TAPKFNVPP 392
A
Sbjct: 320 EAAALEHHH 328
Score = 36.3 bits (83), Expect = 0.022
Identities = 15/111 (13%), Positives = 27/111 (24%), Gaps = 23/111 (20%)
Query: 402 KGENVV----VKIPFTGYPKPKITWYRDNEVIES---------GGHFHVETSERHAI--- 445
G +VV P ++TW + + G ER
Sbjct: 28 IGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRP 87
Query: 446 ------LTIRDASNVDTAPYR-VVAENDLGMDSAIVKIQISDRPDPPQFPT 489
+ + D Y A G + + + + +P T
Sbjct: 88 SFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGT 138
Score = 35.1 bits (80), Expect = 0.051
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 52 IIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKH-----TC 106
+ R+ ++ + T+N+ P I D + + TC
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254
Query: 107 TLHWNPP 113
NPP
Sbjct: 255 KADANPP 261
Score = 31.6 bits (71), Expect = 0.62
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 23 QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
E T + + + F I AG Y +N G+ SG
Sbjct: 261 PATEYHWTTLNGSLPKG-----VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVE 315
Query: 83 INITGLP 89
+NIT
Sbjct: 316 VNITEAA 322
Score = 29.7 bits (66), Expect = 2.6
Identities = 19/111 (17%), Positives = 30/111 (27%), Gaps = 13/111 (11%)
Query: 16 KIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYI---IIFIKEIRKEDAGDYTVNLSN 72
K Q + + G V + R + L I + + ED G Y +
Sbjct: 54 KSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT 113
Query: 73 -SSGSVSGTFTINITGLPGPPIGPLDVSEITKH---------TCTLHWNPP 113
+G+ + + P I K TCT P
Sbjct: 114 FPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKP 164
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 80.9 bits (200), Expect = 9e-19
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEG 345
++ P I+ N + A +C TG P P ISWLK R I +G
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
TL I ++ D Y C A + G S A L + +
Sbjct: 63 ---TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 52.8 bits (127), Expect = 5e-09
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES-GGHFHVETSERH 443
P P ++K TG P P I+W ++ ++
Sbjct: 8 PPIILQGPA---NQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ--- 61
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
L I++ DT Y VA + G S + +++
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 38.9 bits (91), Expect = 5e-04
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
+S K G D + T+ + + IK +R D G YT ++SSG S + +++
Sbjct: 39 VISWLKEGFTFPGRDP-RATIQEQGTL-QIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Query: 86 TG 87
T
Sbjct: 97 TE 98
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 85.9 bits (212), Expect = 1e-18
Identities = 41/303 (13%), Positives = 84/303 (27%), Gaps = 38/303 (12%)
Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
+ + V+Q+ +W + + G + S + V + A +
Sbjct: 25 QVPNMEVTHVSQL-------TWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR 77
Query: 249 ---INIPNLI---EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNA 302
+ + L EG Y + S +++ P+ ++
Sbjct: 78 NASLRMFGLRVEDEGN-YTCLFVTFPQG----SRSVDIWLRVLAK-----PQNTAEVQKV 127
Query: 303 NAIQNHNAQFQCT-ITGCPKPTISWLKGSREITPSARHHIFAEGD---TYTLIINSVYGV 358
+C G P I+W + +++ F G T I+ V
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQV 187
Query: 359 DADEYVCRAVNKGGVKS--TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYP 416
D C+ ++ K L + P+ ++ D ++ + P
Sbjct: 188 DGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY--DNNWYLGQNEATLTCDARSNP 245
Query: 417 KP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK 475
+P W + + A L IR N LG A +
Sbjct: 246 EPTGYNWSTTMGPLPPF------AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELT 299
Query: 476 IQI 478
+Q+
Sbjct: 300 VQV 302
Score = 79.0 bits (194), Expect = 3e-16
Identities = 36/306 (11%), Positives = 77/306 (25%), Gaps = 41/306 (13%)
Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPKPT-----ISWLK-------------GSREITPS 336
++ + C + ++W + + S
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 337 ARHHIF-----AEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNV 390
R AE +L + + D Y C V G +S L ++ P+
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 391 PPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSER---HAIL 446
+ + + + G P +ITW+ D + + S ++
Sbjct: 123 EVQ---KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLW 179
Query: 447 TIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS----DRPDPPQFPTVEDIGHDSLALVW 502
+ +S VD E++ ++ + ++ + +G + L
Sbjct: 180 ILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTC 239
Query: 503 RAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR 562
A T Y P+ + + I + N G
Sbjct: 240 DA---RSNPEPTGYNWSTTMGPLPPFAVAQGAQLL---IRPVDKPINTTLICNVTNALGA 293
Query: 563 SDPSTT 568
T
Sbjct: 294 RQAELT 299
Score = 32.4 bits (73), Expect = 0.33
Identities = 16/93 (17%), Positives = 24/93 (25%), Gaps = 6/93 (6%)
Query: 22 DQPMEVSLTKNGRVVQSDDRFKFTVLDDYII-----IFIKEIRKEDAGDYTVNLSNS-SG 75
M V G R +F + + +R ED G+YT G
Sbjct: 45 SGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQG 104
Query: 76 SVSGTFTINITGLPGPPIGPLDVSEITKHTCTL 108
S S + + P V +
Sbjct: 105 SRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMA 137
Score = 32.4 bits (73), Expect = 0.39
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 23 QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
+P + + + + L I+ + K N++N+ G+ T
Sbjct: 246 EPTGYNWSTTMGPLPPFAVAQGAQL------LIRPVDKPINTTLICNVTNALGARQAELT 299
Query: 83 INI 85
+ +
Sbjct: 300 VQV 302
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 83.6 bits (206), Expect = 1e-18
Identities = 25/209 (11%), Positives = 55/209 (26%), Gaps = 28/209 (13%)
Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT------PSARHHIFAEGDT- 347
+ P + +C + ++ S + S R + E
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 348 --YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGEN 405
I SV D+ +Y C + + + +
Sbjct: 65 GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVP----GTGE 120
Query: 406 VVVKIPFTGYPKPKITWYRDNE------VIESGGHFHVETSERHAILTIRDASNVDTAPY 459
V + GYP +++W + + G + V + L ++ + + +
Sbjct: 121 VQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSV-----LRLKPQPSRN---F 172
Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFP 488
+ N + I R P+ P
Sbjct: 173 SCMFWNAHMKELTSAIIDPLSRM-EPKVP 200
Score = 51.6 bits (123), Expect = 1e-07
Identities = 30/207 (14%), Positives = 53/207 (25%), Gaps = 20/207 (9%)
Query: 193 PGIPVVTQVGGDFV---NLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
P VG + + + G R S +R +
Sbjct: 8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRA--SLQKVENDTSLQSERATLLEEQLPLG 65
Query: 250 N----IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI 305
IP++ ++R A + +K + + R
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAA-----WDYKYLTVKVKASYMRIDT----RILEVP 116
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
Q C G P +SW S S H EG + + + + C
Sbjct: 117 GTGEVQLTCQARGYPLAEVSWQNVSVPANTS--HIRTPEGLYQVTSVLRLKPQPSRNFSC 174
Query: 366 RAVNKGGVKSTKAELIIMTAPKFNVPP 392
N + T A + ++ + VP
Sbjct: 175 MFWNAHMKELTSAIIDPLSRMEPKVPR 201
Score = 42.3 bits (99), Expect = 1e-04
Identities = 13/107 (12%), Positives = 29/107 (27%), Gaps = 9/107 (8%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGH---------FHVETSERHAILTIRDASN 453
G +V ++ F ++ R + + A+ I
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLAL 500
D+ YR + D + +++ +E G + L
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQL 123
Score = 30.0 bits (67), Expect = 1.4
Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 12/105 (11%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKF----TVLDDYII-----IFIKEIRKEDAGDYTVNLS 71
+ E+ + +D T+L++ + I ++ D+G Y +
Sbjct: 28 RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI 87
Query: 72 NSSGSVSGTFTINITGL---PGPPIGPLDVSEITKHTCTLHWNPP 113
+ T+ + I + + + TC P
Sbjct: 88 CGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL 132
Score = 29.2 bits (65), Expect = 3.1
Identities = 3/36 (8%), Positives = 14/36 (38%)
Query: 58 IRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPI 93
++ + + +++ N+ + I+ P +
Sbjct: 164 LKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKV 199
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 80.4 bits (198), Expect = 1e-18
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
S SPP +V V L WD P + R+ GY ++ GS W+ ++ A
Sbjct: 1 GSSGSSGLSPP-RGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEG-RQGSQGWEVLDPA 57
Query: 243 ICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
+ ++ +P LI+ YEFR+ A + +S PS+ +N
Sbjct: 58 VAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96
Score = 73.8 bits (181), Expect = 3e-16
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
Query: 89 PGPPIGP--LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT-CHD 145
+ P V+ T LHW+PP ++ YV+E R S + +
Sbjct: 4 GSSGLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTE 62
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
T +V GL + Y F ++A + + P N + S P
Sbjct: 63 TELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS-----GLSGP 105
Score = 73.8 bits (181), Expect = 3e-16
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTR 535
S PP+ V + L W P + Y++E R+ W +
Sbjct: 5 SSGLSPPR-GLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLEGRQ-GSQGWEVLDPAVAGT 61
Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPIS 587
T + + GL YEFR+ A SDPS T+++ T+ G+ P S
Sbjct: 62 ETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS------GLSGPSS 107
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 86.0 bits (212), Expect = 2e-18
Identities = 19/204 (9%), Positives = 52/204 (25%), Gaps = 38/204 (18%)
Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD----------------- 346
+ + CT + W ++ + +G
Sbjct: 6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV 406
+ LII ++ D+D Y+C + + + +L++ + +G+++
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLT---ANS----DTHLLQGQSL 114
Query: 407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
+ + P + GG L++ D+ + +
Sbjct: 115 TLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQN 164
Query: 467 LGMDSAIVKIQISDRPDPPQFPTV 490
+ I +
Sbjct: 165 QKKVEFKIDIVVLAFQKASSIVYK 188
Score = 74.8 bits (183), Expect = 1e-14
Identities = 28/223 (12%), Positives = 60/223 (26%), Gaps = 31/223 (13%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
+ + +Q + P++ + + TL ++ + D+
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDS 154
Query: 361 DEYVCRAVNKGGVKSTKAELIIMTAPK--------------FNVPPRFRDTAYFDKGENV 406
+ C + K +++++ K F+ P F GE
Sbjct: 155 GTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELW 214
Query: 407 VVKIPFTGYPKPKITWYRDNE---VIESGGHFHVETSER---HAILTIRDASNVDTAPYR 460
K IT+ N+ V ++ ++ H L +
Sbjct: 215 WQAER-ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273
Query: 461 VVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWR 503
+ E G V + + + T E G S L+
Sbjct: 274 LALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLS 316
Score = 55.2 bits (132), Expect = 2e-08
Identities = 19/220 (8%), Positives = 42/220 (19%), Gaps = 49/220 (22%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQ-----------C 314
+ I KA I+ + F
Sbjct: 161 VLQNQK-----KVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW 215
Query: 315 TITGCPKP----TISWLKGSREITPSARHHIFAEGDTY----TLIINSVYGVDADEYVCR 366
T + + G TL +
Sbjct: 216 QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLA 275
Query: 367 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 426
K G + L++M A + N+ ++ PK ++ +N
Sbjct: 276 LEAKTGKLHQEVNLVVMRATQLQK--------------NLTCEVWGPTSPKLMLSLKLEN 321
Query: 427 EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
+ + N + ++ + +
Sbjct: 322 KEAKVSKR-----------EKAVWVLNPEAGMWQCLLSDS 350
Score = 45.9 bits (108), Expect = 2e-05
Identities = 36/339 (10%), Positives = 72/339 (21%), Gaps = 70/339 (20%)
Query: 55 IKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP- 113
IK ++ ED+ Y + + V + + GL L + T
Sbjct: 71 IKNLKIEDSDTYICEVEDQKEEV----QLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 126
Query: 114 -----KYDGGLKVTHYVVERRDISMPH---WICISTTCHDTTFIVQGLTEGQEYLFHVMA 165
G + + + W C Q+ + +
Sbjct: 127 SVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ-------------NQKKVEFKID 173
Query: 166 VNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYW 225
+ + K + + L W +
Sbjct: 174 IVVLAFQKASS---IVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFD 230
Query: 226 IDKHEV---GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY---AQNEAGLSLPSSAS 279
+ EV ++ + P + +P + + + G L +
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQ-ALPQYAGSGNLTLALEAKTG-KLHQEVN 288
Query: 280 NSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP--TISWLKGSREITPSA 337
V C + G P +S ++E S
Sbjct: 289 LVVM--------------------RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK 328
Query: 338 RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST 376
R V +A + C + G V
Sbjct: 329 REKAV-----------WVLNPEAGMWQCLLSDSGQVLLE 356
Score = 44.0 bits (103), Expect = 9e-05
Identities = 13/117 (11%), Positives = 31/117 (26%), Gaps = 5/117 (4%)
Query: 28 SLTKNGRVVQSDDR-FKFTVLDDY---IIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83
L V+ + K + + + + +G+ T+ L +G + +
Sbjct: 230 DLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Query: 84 NITGLPGPPIG-PLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICI 139
+ +V T L + + V + W C+
Sbjct: 290 VVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCL 346
Score = 39.4 bits (91), Expect = 0.002
Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 18/108 (16%)
Query: 395 RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET--------------- 439
+ KG+ V + + + W N++ G T
Sbjct: 1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60
Query: 440 --SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
+ + L I++ D+ Y E+ +V ++ D
Sbjct: 61 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANSDTH 107
Score = 37.9 bits (87), Expect = 0.008
Identities = 7/93 (7%), Positives = 25/93 (26%), Gaps = 10/93 (10%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
+ ++ +G + + + V + + + ++
Sbjct: 102 ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLEL 151
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPI 93
+D+G +T + + V I +
Sbjct: 152 QDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASS 184
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 79.9 bits (197), Expect = 3e-18
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 7/105 (6%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT---- 347
P ++ + + G P PT+ WL + + S H+ +
Sbjct: 8 PPRVVSLE---EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
L+ N + Y A N G + + P
Sbjct: 65 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109
Score = 79.9 bits (197), Expect = 3e-18
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 389 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE----RHA 444
PPR + ++ G P P + W + + + HVE +
Sbjct: 6 YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
L ++ + Y ++A+N LG + + P P
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109
Score = 56.4 bits (136), Expect = 5e-10
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 31 KNGRVVQSDDRFKFTVLDDYIIIF----IKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86
NG+ ++ + I + + G+YT+ N G+ + T +
Sbjct: 41 HNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 100
Query: 87 GLPGP-----PIGPLDVS 99
P P P P+ V+
Sbjct: 101 KEPFPVDEVSPTPPITVT 118
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 86.8 bits (214), Expect = 3e-18
Identities = 60/494 (12%), Positives = 125/494 (25%), Gaps = 69/494 (13%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPM----EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKE 57
P+ + +P G + V + DQPM E L K ++ ++R + + +
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSN--------- 56
Query: 58 IRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKH-----TCTLHWNP 112
++ + G + + + P S C +
Sbjct: 57 --VQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGA 114
Query: 113 PKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM- 171
P+ + L V R + T V + F +
Sbjct: 115 PRAN--LTVVLL----RGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ 168
Query: 172 -GPPLEGINPIKAKSPYDKPSPPGIPVVTQV--GGDFVNLSWDKPLDDGGSRIQGYWIDK 228
E + + P+ P V +V + S Q +
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228
Query: 229 HEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM 288
+ + N + A + +++ EG +V I
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEG-TQRLTCAVILGNQ---SQETLQTVTIYSF- 283
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
P V L + +C K T++ + G
Sbjct: 284 ----PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP------------LGPRA 327
Query: 349 TLIINSVYGVDADEYVCRAVNKGG----VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGE 404
L++ + + + C A + K+ EL ++ P+ + + + +
Sbjct: 328 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT-WPENS 386
Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAE 464
G P P++ +D G T + Y A
Sbjct: 387 QQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD-------------LEGTYLCRAR 433
Query: 465 NDLGMDSAIVKIQI 478
+ G + V + +
Sbjct: 434 STQGEVTREVTVNV 447
Score = 69.1 bits (168), Expect = 1e-12
Identities = 30/308 (9%), Positives = 80/308 (25%), Gaps = 26/308 (8%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
+ V + + C+ + + TP + + G+ +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIE------TPLPKKELLLPGNNRKVYEL 54
Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-IPF 412
S + + +C + G + K L + P+ ++ G+N+ ++
Sbjct: 55 SNVQ-EDSQPMCYSNCPDGQSTAKTFLTVYWTPER--VELAPLPSWQPVGKNLTLRCQVE 111
Query: 413 TGYPKP--KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD 470
G P+ + R + ++ T+ + A + E DL
Sbjct: 112 GGAPRANLTVVLLRGEKELKRE---PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ 168
Query: 471 --------SAIVKIQISDRPDPPQFPTVEDIGH--DSLALVWRAPIWDGGSNITNYIVEK 520
SA ++Q P P + +V S ++
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228
Query: 521 REHPMSSWIRVGNTRFTTMAITGL-SPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELL 579
+ + ++ +++ + T + + +
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288
Query: 580 SGMEAPIS 587
+ +S
Sbjct: 289 ILTKPEVS 296
Score = 53.7 bits (128), Expect = 1e-07
Identities = 50/378 (13%), Positives = 105/378 (27%), Gaps = 63/378 (16%)
Query: 23 QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS------ 76
+ V L + + ++ + + + R +++
Sbjct: 117 ANLTVVLLRGEKELKREP---AVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 77 --VSGTFTINITGLPGPPIGP-----LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR 129
S + + LP P L+V C+L P + +V + ++R
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSE--AQVHLALGDQR 231
Query: 130 DISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDK 189
+ S + V +T E + G ++ + Y
Sbjct: 232 LNPTVTYGNDSFS---AKASVS-VTAEDEGTQRLTCAVILGNQ----SQETLQTVTIYSF 283
Query: 190 PSPPGIPVVTQVG-GDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
P+P I +V G V + + +++ + +G A +
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKCEA---HPRAKVTLNGVPAQPLGPRAQLLLKAT------ 334
Query: 249 INIPNLIEGRQYEFRVYAQNE-AGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNAN--AI 305
GR + A E AG + + + +++ P + N
Sbjct: 335 ----PEDNGRSFSCS--ATLEVAGQLIHKNQTRELRVLYG-----PRLDERDCPGNWTWP 383
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
+N C G P P + LK P +V Y+C
Sbjct: 384 ENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------GESVTVTRDLEGTYLC 430
Query: 366 RAVNKGGVKSTKAELIIM 383
RA + G + + + ++
Sbjct: 431 RARSTQGEVTREVTVNVL 448
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 85.7 bits (211), Expect = 3e-18
Identities = 40/255 (15%), Positives = 75/255 (29%), Gaps = 34/255 (13%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP--LRNANAIQNHNAQFQCTITGCPKPT 323
+N + V KD ++ V + KPT
Sbjct: 98 LRNTTY-CSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPT 156
Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV----NKGGVKSTKAE 379
I+W G +I +++ EG L + Y C + +
Sbjct: 157 ITWYMGCYKIQNF--NNVIPEGMN--LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLT 212
Query: 380 LIIMTAPKFNVPPRFRD-----TAYFDKGENV----VVKIPFTGYPKPKITWYRDNEVIE 430
+ ++ +PK VPP + GE + V F + ++ W D + +
Sbjct: 213 VKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPD 272
Query: 431 SGGHFHVETSERH----------AILTIRDASNVDTA-PYRVVAENDLGMDSAIVKIQIS 479
IL+I+ ++ D Y A + G + K++
Sbjct: 273 DITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ- 331
Query: 480 DRPDPPQFPTVEDIG 494
+ P++ TVE
Sbjct: 332 -KVPAPRY-TVELAC 344
Score = 78.0 bits (191), Expect = 9e-16
Identities = 32/204 (15%), Positives = 56/204 (27%), Gaps = 23/204 (11%)
Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPS-------ARHHIFAEGDTYTLIINSVY 356
+ H +F + T+ W ++ + I E D L
Sbjct: 30 PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV--LWFRPTL 87
Query: 357 GVDADEYVCRAVNKGGVKSTKAEL-IIMTAPKFNVPPRFRDTAYFDKGENVVVKIP---- 411
D Y C N L ++ FN P + + + + P
Sbjct: 88 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDG 147
Query: 412 -FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM- 469
F KP ITWY I++ + E L+ A + Y V
Sbjct: 148 YFPSSVKPTITWYMGCYKIQNFNNVIPEGMN----LSFLIALISNNGNYTCVVTYPENGR 203
Query: 470 ---DSAIVKIQISDRPDPPQFPTV 490
+ + +++ P P +
Sbjct: 204 TFHLTRTLTVKVVGSPKNAVPPVI 227
Score = 38.7 bits (89), Expect = 0.004
Identities = 11/86 (12%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 18 FYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT----VNLSNS 73
++ ++ +Q+ + V+ + + + + G+YT +
Sbjct: 148 YFPSSVKPTITWYMGCYKIQNFNN----VIPEGMNLSFLIALISNNGNYTCVVTYPENGR 203
Query: 74 SGSVSGTFTINITGLPGPPIGPLDVS 99
+ ++ T T+ + G P + P+ S
Sbjct: 204 TFHLTRTLTVKVVGSPKNAVPPVIHS 229
Score = 34.5 bits (78), Expect = 0.098
Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIII-----FIKEIRKEDAGDYTVNLSNSS 74
A + + + ++ F + ++ I + + D G+YT L N++
Sbjct: 43 AHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTT 102
Query: 75 GSVSGTFTINITGLPGPPIGPLDVSEITKHT 105
F + + P+ + +
Sbjct: 103 YCSKVAFPLEVVQKDSCFNSPMKLPVHKLYI 133
Score = 29.1 bits (64), Expect = 4.3
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 14 KVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYI----------IIFIKEIRKED- 62
V + D EV T +G+ I+ IK++ ED
Sbjct: 249 TVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDL 308
Query: 63 AGDYTVNLSNSSGSVSGTFTINI 85
Y + ++ G V+ +
Sbjct: 309 KRSYVCHARSAKGEVAKAAKVKQ 331
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 83.8 bits (207), Expect = 3e-18
Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 26/197 (13%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLI 351
I + + Q C + P + W S +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP----------SYR 51
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-I 410
I S D+ EY C+ +S +L I F +GE + ++
Sbjct: 52 ITSASVNDSGEYRCQRGL--SGRSDPIQLEIHRGWLLLQVSS----RVFTEGEPLALRCH 105
Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD 470
+ + +YR+ + + F S LTI + Y
Sbjct: 106 AWKDKLVYNVLYYRNGKAFK----FFHWNSN----LTILKTNISHNGTYHCSGMGKHRYT 157
Query: 471 SAIVKIQISDRPDPPQF 487
SA + + + + P
Sbjct: 158 SAGISVTVKELFPAPVL 174
Score = 66.9 bits (163), Expect = 2e-12
Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 31/218 (14%)
Query: 269 EAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWL 327
+ GLS S + + + + + +C + +
Sbjct: 66 QRGLSGRSDPIQLEIHRGWLLLQVSSRVF-------TEGEPLALRCHAWKDKLVYNVLYY 118
Query: 328 KGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MT 384
+ + L I Y C + K S + +
Sbjct: 119 RNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFP 170
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYP-KPKITWYRDNEVIESGGHFHVETSERH 443
AP N T+ +G V + +P + Y G +
Sbjct: 171 APVLNASV----TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY----MGSKTLRGRNTS 222
Query: 444 AILTIRDASNVDTAPYRVVAENDLG---MDSAIVKIQI 478
+ I A D+ Y A + G S +++Q+
Sbjct: 223 SEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
Score = 39.9 bits (93), Expect = 0.001
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 2 PNALYIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
++ EG+ ++ + V +NG+ + + I +
Sbjct: 89 VSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNS--------NLTILKTNI 140
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPI 93
G Y + S ++ + L P+
Sbjct: 141 SHNGTYHCSGMGKHRYTSAGISVTVKELFPAPV 173
Score = 39.1 bits (91), Expect = 0.002
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 20/124 (16%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP--- 322
+ +SA SV +K+ AP + + + ++ + C +
Sbjct: 150 GMGKHR---YTSAGISVTVKEL--FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGL 203
Query: 323 --TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAE 379
S+ GS+ + I + D+ Y C A + G V E
Sbjct: 204 QLYFSFYMGSKTLRGRNTSS--------EYQILTARREDSGLYWCEAATEDGNVLKRSPE 255
Query: 380 LIIM 383
L +
Sbjct: 256 LELQ 259
Score = 30.7 bits (69), Expect = 1.3
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 55 IKEIRKEDAGDYTVNLSNSSGSV---SGTFTINITG 87
I R+ED+G Y + G+V S + + G
Sbjct: 227 ILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 81.9 bits (202), Expect = 3e-18
Identities = 18/192 (9%), Positives = 49/192 (25%), Gaps = 38/192 (19%)
Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD----------------- 346
+ + CT + W ++ + +G
Sbjct: 7 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV 406
+ LII ++ D+D Y+C ++ + + ++ G+++
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKE-EVQLLVFGLTANSDTHLLQ----------GQSL 115
Query: 407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
+ + P + GG L++ D+ + +
Sbjct: 116 TLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQN 165
Query: 467 LGMDSAIVKIQI 478
+ I +
Sbjct: 166 QKKVEFKIDIVV 177
Score = 60.4 bits (146), Expect = 9e-11
Identities = 8/87 (9%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
+ + +Q + P++ + TL ++ + D+
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQLELQDS 155
Query: 361 DEYVCRAVNKGGVKSTKAELIIMTAPK 387
+ C + K +++++ K
Sbjct: 156 GTWTCTVLQNQKKVEFKIDIVVLAFQK 182
Score = 40.7 bits (95), Expect = 5e-04
Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 18/108 (16%)
Query: 395 RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET--------------- 439
+ KG+ V + + + W N++ G T
Sbjct: 2 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61
Query: 440 --SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
+ + L I++ D+ Y E+ +V ++ D
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANSDTH 108
Score = 36.1 bits (83), Expect = 0.015
Identities = 7/83 (8%), Positives = 23/83 (27%), Gaps = 10/83 (12%)
Query: 7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 66
+ +G + + + V + + + ++ +D+G +
Sbjct: 109 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTW 158
Query: 67 TVNLSNSSGSVSGTFTINITGLP 89
T + + V I +
Sbjct: 159 TCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 31.5 bits (71), Expect = 0.45
Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 13/96 (13%)
Query: 55 IKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP- 113
IK ++ ED+ Y + + V + + GL L + T
Sbjct: 72 IKNLKIEDSDTYICEVEDQKEEV----QLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 127
Query: 114 -----KYDGGLKVTHYVVERRDISMPH---WICIST 141
G + + + W C
Sbjct: 128 SVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVL 163
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 78.8 bits (195), Expect = 4e-18
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
+ PGP L + + + W PP Y G V Y + ++S I
Sbjct: 5 SSGPGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEVD--G 60
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
++ ++GL + EY +A N G G + I + D G
Sbjct: 61 LSYKLEGLKKFTEYSLRFLAYNRYGPGVSTD---DITVVTLSDSGPSSG 106
Score = 71.9 bits (177), Expect = 1e-15
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
P P + S+ + W P + G + Y + E + + +
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEVDG-LSYKL 65
Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
GL +Y R A N YG + ++T
Sbjct: 66 EGLKKFTEYSLRFLAYNRYGPGVSTDDITVVT 97
Score = 68.4 bits (168), Expect = 2e-14
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
S P P + ++W+ P G +QGY + EV + Q + V
Sbjct: 3 SGSSGPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEVD-- 59
Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
+ L + +Y R A N G + + V + D
Sbjct: 60 -GLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDS 101
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 81.4 bits (200), Expect = 9e-18
Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 24/218 (11%)
Query: 91 PPIGPLDVSEIT---KHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC---- 143
PP P ++S + ++ W P + L T ++++ T
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLP-TSFILKSFRSRADCQYQGDTIPDCVA 61
Query: 144 ----HDTTFIVQGLTEGQEYLFHVMAVNENGMGP-PLEGINPIKAKSPYDKPSPPGIPVV 198
++ + + L Q V A N G P ++P+ K PP + +
Sbjct: 62 KKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMD----VVKLEPPMLQAL 117
Query: 199 T------QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIP 252
+ LSW + + ++ W V + Q +
Sbjct: 118 DIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELC 177
Query: 253 NLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
L + Y ++ + S S +Q++ M A
Sbjct: 178 GLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMKA 215
Score = 55.6 bits (133), Expect = 7e-09
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 11/118 (9%)
Query: 460 RVVAENDLGM---DSAIVKIQISDRPDPPQFPTVE------DIGHDSLALVWRAPIWDGG 510
V AEN LG + + +PP ++ L L W+
Sbjct: 84 WVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEY 143
Query: 511 SNITNYIVEKREHPMSSWIRVGNTRF--TTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
+ + + ++W V + + GL Y ++ S
Sbjct: 144 MEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWS 201
Score = 31.7 bits (71), Expect = 0.55
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 12/98 (12%)
Query: 482 PDPPQFPT-VEDIGHDSLALVWRAPIWDGGSNITNYIV---------EKREHPMSSWIRV 531
P P + + + +SL W + T++I+ + + + +
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGP-ETHLP-TSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 532 GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
++ L V AEN+ G S+
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLC 100
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 81.0 bits (199), Expect = 1e-17
Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 13/189 (6%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSV 355
P A + C+ TGC P SW + EG T TL +N V
Sbjct: 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS---PLNGKVTNEGTTSTLTMNPV 61
Query: 356 YGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG- 414
+ Y+C A + ++ I + PK + + G+ + VK
Sbjct: 62 SFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHL---SGPLEAGKPITVKCSVADV 118
Query: 415 YPKPK--ITWYRDNEVIESGGHFHVETSE----RHAILTIRDASNVDTAPYRVVAENDLG 468
YP + I + + +++S + + +T A+ +
Sbjct: 119 YPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID 178
Query: 469 MDSAIVKIQ 477
++ ++
Sbjct: 179 EMDSVPTVR 187
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 79.8 bits (196), Expect = 3e-17
Identities = 23/192 (11%), Positives = 48/192 (25%), Gaps = 12/192 (6%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
+N C + +S E + + I S A C
Sbjct: 23 KNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFC 81
Query: 366 RAVNKGGVKSTKAELIIMTAPKF-NVPPRFRDTAYFDKGENVVVKIPFTGYP--KPKITW 422
A + ++++ + +V GE +V+ W
Sbjct: 82 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 141
Query: 423 YRDNEVIESGG--------HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474
+ + E + + LTI + D Y A + L
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 201
Query: 475 KIQISDRPDPPQ 486
+++ + P +
Sbjct: 202 FVRVHEDPIEGR 213
Score = 39.0 bits (90), Expect = 0.002
Identities = 10/102 (9%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLT--------KNGRVVQSDDRFKF--TVLDDY 50
+ + + G+ + + + + ++ ++V D + + +
Sbjct: 111 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 170
Query: 51 IIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPP 92
+ I + + D G YT S+ + + + + P
Sbjct: 171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIEG 212
Score = 33.2 bits (75), Expect = 0.16
Identities = 20/181 (11%), Positives = 45/181 (24%), Gaps = 15/181 (8%)
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
K + VV+ + ++ + + + TI
Sbjct: 23 KNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFC 81
Query: 462 VAENDLGMDSAIVKIQISDRPDPPQF-----PTVEDIGHDSLAL---VWRAP------IW 507
A+ + +I+ I + +E + L L W
Sbjct: 82 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 141
Query: 508 DGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST 567
+ S+ + + +T+ I G++ Q + A + ST
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 201
Query: 568 T 568
Sbjct: 202 F 202
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 76.3 bits (188), Expect = 3e-17
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 293 PEIIVP--LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
I+ P + + C ++ +W K +++ S + +G + L
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRL 67
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
I+ D+ E+ CR S + +
Sbjct: 68 ILPEAKVQDSGEFECRTEG----VSAFFGVTV 95
Score = 57.8 bits (140), Expect = 1e-10
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
P + P+ + + F E VV+ + TWY+D + +E V+ R
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKH 65
Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
L + +A D+ + E V +Q P P
Sbjct: 66 RLILPEAKVQDSGEFECRTEGVSA--FFGVTVQ---DPSGP 101
Score = 43.9 bits (104), Expect = 9e-06
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 31 KNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPG 90
K+G+ V+ + + + + E + +D+G++ + VS F + + G
Sbjct: 45 KDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFEC----RTEGVSAFFGVTVQDPSG 100
Query: 91 PPIG 94
P G
Sbjct: 101 PSSG 104
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 83.9 bits (206), Expect = 3e-17
Identities = 67/514 (13%), Positives = 137/514 (26%), Gaps = 63/514 (12%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
VS GR ++ + ++ I ++ ++D+G Y L +S +S ++ +
Sbjct: 55 YVSSKYAGRANLTNFP-----ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWN-------PPKY---DGGLKVTHYVVERRDISMPH 135
+ PG + T T++ K GL + ++ +
Sbjct: 110 SQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNY 169
Query: 136 WICISTTCHDT-----TFIVQGLTEGQE--YLFHVMAVNENGMGPPLEGINPIKAKSPYD 188
I T + ++ L YL + + + K +
Sbjct: 170 TGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA----GDDSNSNKKNADLQVLKPEPE 225
Query: 189 KPSPP---GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
+ +G + N++ G + R+ +
Sbjct: 226 LVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQD 285
Query: 246 PS---QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNA 302
+ I L + + A ++ L S + I
Sbjct: 286 KDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEE----STIPRSPTVV 341
Query: 303 NAIQNHNAQFQCTITGCPKPTISWL-----------------KGSREITPSARHHIFAEG 345
+ + C +I + +G + R + E
Sbjct: 342 KGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEP 401
Query: 346 D--TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKG 403
T+T+I+N + DA Y C ++T II P VP
Sbjct: 402 GNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLK 461
Query: 404 ENVVVKIPFTGYPKPKITWYRD-------NEVIESGGHFHVETSERHAILTIRDASNVDT 456
F+ Y K W + S + + + R LT+ + D
Sbjct: 462 VPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADE 521
Query: 457 APYR-VVAENDLGMDSAIVKIQISDRPDPPQFPT 489
Y V + ++A V + + +R
Sbjct: 522 GWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV 555
Score = 75.4 bits (184), Expect = 2e-14
Identities = 38/306 (12%), Positives = 92/306 (30%), Gaps = 37/306 (12%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR-NANAIQNHNAQFQCTITGCPKPTI 324
A +++ + ++ ++ + + + V + A+F C + +
Sbjct: 204 AGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDV 263
Query: 325 SWLK-GSREITPSARHHIF--AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 381
G R R + + +++++I + DA Y+C A + G ++
Sbjct: 264 VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323
Query: 382 -IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE---------VIES 431
+ + + PR G +V V P+ I ++ E +++S
Sbjct: 324 WQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDS 383
Query: 432 GGHFHVETSERHAI----------LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
G + R ++ + + ++ D Y + D + + I
Sbjct: 384 EGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGE 443
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
P+ V + ++L + P W + NT +
Sbjct: 444 PNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKY-------------WCKWNNTGCQALPS 490
Query: 542 TGLSPG 547
P
Sbjct: 491 QDEGPS 496
Score = 62.3 bits (150), Expect = 2e-10
Identities = 43/328 (13%), Positives = 78/328 (23%), Gaps = 59/328 (17%)
Query: 310 AQFQCTI---TGCPKPTISWLKG--------------SREITPSARHHI--FAEGDTYTL 350
C + W + + R ++ F E T+ +
Sbjct: 18 VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV 77
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI 410
I + D+ Y C S L + P + D G V +
Sbjct: 78 NIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKV---YTVDLGRTVTINC 134
Query: 411 PFTGYPKPKIT-WYRDN-----EVIESGGHFHVETSERHAI-----------LTIRDASN 453
PF K Y+ VI+S G+ + + R + + I
Sbjct: 135 PFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194
Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNI 513
D Y A +D + +Q+ + + S+
Sbjct: 195 SDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLR----GSVTFHCALGPEVANVAK 250
Query: 514 TNYIVEKREHPMSSWIRVG------NTRFT----------TMAITGLSPGHQYEFRVYAE 557
E+ +G R ++ ITGL + A
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAH 310
Query: 558 NVYGRSDPSTTSDLITTYGELLSGMEAP 585
+ + S E + +P
Sbjct: 311 SDGQLQEGSPIQAWQLFVNEESTIPRSP 338
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 79.3 bits (195), Expect = 4e-17
Identities = 28/213 (13%), Positives = 65/213 (30%), Gaps = 27/213 (12%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP------------------ 335
E+ + +++N +W KG+
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60
Query: 336 -SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 394
S R I++ G +L+ + D Y ++ ++ + P +
Sbjct: 61 YSGREIIYSNG---SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV 117
Query: 395 RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNV 454
+T + ++V + + I W +++ ++ + S+ ++IL I
Sbjct: 118 TNTTV-KELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTL--SQNNSILRIDPIKRE 173
Query: 455 DTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQ 486
D Y+ N + S +K+ I P
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDIIFDPHHHH 206
Score = 65.5 bits (159), Expect = 2e-12
Identities = 26/201 (12%), Positives = 57/201 (28%), Gaps = 17/201 (8%)
Query: 197 VVTQVGGDFVNLSWDKPLD-DGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLI 255
+V + +W K I + + + + I + + +
Sbjct: 20 LVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMIT 79
Query: 256 EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT 315
+ + +E ++ + + + + N + + C
Sbjct: 80 MKDMGVYTLDMTDENY------RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC- 132
Query: 316 ITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK- 374
++ I WL S+ + + R + L I+ + DA EY C N V+
Sbjct: 133 LSNDIGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRR 190
Query: 375 STKAELIIMTAPKFNVPPRFR 395
S +L I P
Sbjct: 191 SNSIKLDI------IFDPHHH 205
Score = 40.4 bits (94), Expect = 6e-04
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+ E D+ + + D + N + +Q +R + + I+ I I++E
Sbjct: 117 VTNTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLS--QNNSILRIDPIKRE 173
Query: 62 DAGDYTVNLSNS-SGSVSGTFTINITGLPGP 91
DAG+Y +SN S S + ++I + P
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDI--IFDP 202
Score = 37.7 bits (87), Expect = 0.005
Identities = 25/184 (13%), Positives = 54/184 (29%), Gaps = 25/184 (13%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESG----------------GHFHVETSERHAIL 446
NV++ + WY+ N + E + L
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 447 TIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPP--QFPTVEDIGHDSLALVWR 503
+ + D Y + ++ A V+ + P Q DS+ L
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133
Query: 504 APIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYG-- 561
+ D G+NI ++ + ++ + + + + I + E++ N
Sbjct: 134 SN--DIGANIQ-WLFNSQSLQLTERMTLSQNN-SILRIDPIKREDAGEYQCEISNPVSVR 189
Query: 562 RSDP 565
RS+
Sbjct: 190 RSNS 193
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 77.0 bits (189), Expect = 5e-17
Identities = 25/138 (18%), Positives = 37/138 (26%), Gaps = 15/138 (10%)
Query: 71 SNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK--------VT 122
S SSG L S+I T L W+PP + +
Sbjct: 3 SGSSGDEETK---AFEALLSNI-VKPVASDIQARTVVLTWSPPSSLINGETDESSVPELY 58
Query: 123 HYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
Y V +T + L +Y V A + G P E
Sbjct: 59 GYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSE---AEI 115
Query: 183 AKSPYDKPSPPGIPVVTQ 200
+ +P P P ++
Sbjct: 116 FTTLSCEPDIPNPPRISG 133
Score = 65.4 bits (159), Expect = 6e-13
Identities = 21/115 (18%), Positives = 29/115 (25%), Gaps = 10/115 (8%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSN--------ITNYIVEKREHPMSSWIR- 530
P DI ++ L W P + Y V +
Sbjct: 16 ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKS 75
Query: 531 VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAP 585
V T + + L P Y +V AE + PS TT P
Sbjct: 76 VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEI-FTTLSCEPDIPNPP 129
Score = 61.5 bits (149), Expect = 1e-11
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 9/108 (8%)
Query: 179 NPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSR--------IQGYWIDKHE 230
+ K+ S PV + + V L+W P + GY +
Sbjct: 7 GDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISS 66
Query: 231 VGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
G D + + I + +L Y +V A+ + PS A
Sbjct: 67 TGKDGKYKSVYVGEETN-ITLNDLKPAMDYHAKVQAEYNSIKGTPSEA 113
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 75.5 bits (186), Expect = 7e-17
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 291 KAPEIIVPLRNANAIQ-NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTY 348
K+ L A + H + + + WLK +EI S +IF + G
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
TL I+ D Y C + EL +
Sbjct: 73 TLTISQCSLADDAAYQCVVGG----EKCSTELFV 102
Score = 55.5 bits (134), Expect = 8e-10
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 391 PPRF----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-ESGGHFHVETSERHAI 445
F KG + + + ++ W ++ + I SG + E+
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73
Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477
LTI S D A Y+ V + S + ++
Sbjct: 74 LTISQCSLADDAAYQCVVGGEKC--STELFVK 103
Score = 38.5 bits (90), Expect = 6e-04
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQ-SDDRFKFTVLDDYIIIFIKEIR 59
+ A + +G ++ + A EV KNG+ +Q S ++ F + + I +
Sbjct: 22 LEPAYQVSKGHKIRLTVELADHDA-EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCS 80
Query: 60 KEDAGDYTVNLSNSSGS 76
D Y + S
Sbjct: 81 LADDAAYQCVVGGEKCS 97
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 75.5 bits (186), Expect = 9e-17
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 468 GMDSAIVKIQIS-DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
S +++ P P E S+ L W P I NY + ++
Sbjct: 3 SGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR---SDTIANYELVYKDGEHG 59
Query: 527 SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
R+ T+ + GL P Y FR+ A + G + T
Sbjct: 60 EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTM 107
Score = 67.7 bits (166), Expect = 4e-14
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 8/107 (7%)
Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
G I+ + P P + LSW P D I Y +
Sbjct: 1 GSSGSSG---DIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYK 54
Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
+ QR+ + + + L Y FR+ A++ GL +
Sbjct: 55 DGEHGEEQRITIE--PGTSYRLQGLKPNSLYYFRLAARSPQGLGAST 99
Score = 66.2 bits (162), Expect = 2e-13
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
G+PG P+ ++ + L W PP+ D + +Y + +D I+ T
Sbjct: 16 GVPGQPLN-FKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIE-PGT 70
Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
++ +QGL Y F + A + G+G I A++ G
Sbjct: 71 SYRLQGLKPNSLYYFRLAARSPQGLGAS---TAEISARTMQSSGPSSG 115
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 82.7 bits (203), Expect = 1e-16
Identities = 54/447 (12%), Positives = 122/447 (27%), Gaps = 66/447 (14%)
Query: 178 INPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI----------- 226
I + + D + L W+ + G+ +
Sbjct: 457 IALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVT 516
Query: 227 ---DKHEVGSDAWQRVNVAICAPSQ---------INIPNLIEGRQYEFRVYAQNEAGLSL 274
+ GS++W V++ S + L QY V
Sbjct: 517 EFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDER 576
Query: 275 PS--SASNSVQIKDPMAA--KAPEIIVPLRNANAIQ---NHNAQFQCTITGCPKPTISWL 327
+ + S+ + ++ + I +++ I + IT + W
Sbjct: 577 RTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHY---LVFW- 632
Query: 328 KGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
+ + + + + + N+ + + E
Sbjct: 633 ---ERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTD 689
Query: 388 FNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
+ ++++ F+ + VV +P + + + E F ++
Sbjct: 690 SQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESL 749
Query: 445 ILTIRDASNVDTAPY-----RVVAENDLG-----MDSAIVKIQISDR---PDPPQFPTVE 491
+++ + + A N +A V + D T E
Sbjct: 750 VIS-------GLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHE 802
Query: 492 DIGHDSLALVWRAPIWDGGSNITNYIVEKREH---PMSSWI-RVGNTRFTTMAITGLSPG 547
++ + L+W+ P G I Y V R + + R + GLSPG
Sbjct: 803 IFENNVVHLMWQEPKEPNGL-IVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG 861
Query: 548 HQYEFRVYAENVYGRSDPSTTSDLITT 574
+ Y R+ A ++ G + + T
Sbjct: 862 N-YSVRIRATSLAGNGSWTEPTYFYVT 887
Score = 80.0 bits (196), Expect = 9e-16
Identities = 27/244 (11%), Positives = 62/244 (25%), Gaps = 35/244 (14%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR------------------- 129
+ + L W P + +++ +
Sbjct: 468 CENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSN 527
Query: 130 -----DISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI--NPIK 182
DI P + + ++++GL +Y V + G + I
Sbjct: 528 SWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIY 587
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
++ PS P P+ + L W P D G I Y + D+
Sbjct: 588 VQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFEL-- 644
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNA 302
+ R + +++ + ++ + K I+
Sbjct: 645 ----DYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGE--CCSCPKTDSQILKELEE 698
Query: 303 NAIQ 306
++ +
Sbjct: 699 SSFR 702
Score = 73.8 bits (180), Expect = 7e-14
Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 9/238 (3%)
Query: 66 YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDV--SEITKHTCTLHWNPPKYDGGLKVTH 123
+ + I + P PLD + L W PP G +TH
Sbjct: 569 LVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGN-ITH 627
Query: 124 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA 183
Y+V + + C + + + + + +
Sbjct: 628 YLVFWERQAEDSELFELDYCLKGL-----KLPSRTWSPPFESEDSQKHNQSEYEDSAGEC 682
Query: 184 KSPYDKPSPPGIPV-VTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
S S + + F + + SR + D G++ R
Sbjct: 683 CSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEK 742
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
+ + I L Y + A N+ S + V + AKA +I+ P+
Sbjct: 743 VVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVT 800
Score = 57.2 bits (137), Expect = 1e-08
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 7/114 (6%)
Query: 66 YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVS--EITKHTCTLHWNPPKYDGGLKVTH 123
+ SV+ + V+ + L W PK GL +
Sbjct: 767 CNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGL-IVL 825
Query: 124 YVVE-RRDISMPHWICISTTCH--DTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
Y V RR +C + + ++GL+ G Y + A + G G
Sbjct: 826 YEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSW 878
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 76.8 bits (189), Expect = 2e-16
Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 27/193 (13%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDT 347
A + + N +Q + C P+ +I W I +
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP-------- 52
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
D+ EY C+ S L ++ P F +GE ++
Sbjct: 53 --SYRFKANNNDSGEYTCQT--GQTSLSDPVHLTVLFEWLVLQTP----HLEFQEGETIM 104
Query: 408 VK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
++ + P K+T++++ + + S +I A++ + Y
Sbjct: 105 LRCHSWKDKPLVKVTFFQNGKSQKF--------SHLDPTFSIPQANHSHSGDYHCTGNIG 156
Query: 467 LGM-DSAIVKIQI 478
+ S V I +
Sbjct: 157 YTLFSSKPVTITV 169
Score = 30.6 bits (69), Expect = 0.81
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 2 PNALYIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
L EG+ ++ + ++V+ +NG+ + I +
Sbjct: 92 TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDP--------TFSIPQANH 143
Query: 61 EDAGDYTVNLSNSSGSV-SGTFTINI 85
+GDY + S TI +
Sbjct: 144 SHSGDYHCTGNIGYTLFSSKPVTITV 169
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 78.7 bits (193), Expect = 2e-16
Identities = 23/232 (9%), Positives = 64/232 (27%), Gaps = 14/232 (6%)
Query: 69 NLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
N ++ T + + P+ + W +T + +
Sbjct: 16 NEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYK 75
Query: 129 RDISMPHWIC---ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKS 185
+ C + + + +Q F V + + +
Sbjct: 76 NSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKL---Q 132
Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
P P + ++ + L+W+ + + + +W +V
Sbjct: 133 NLVIPWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSVDY-- 187
Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLS---LPSSASNSVQIKDPMAAKAPE 294
+ ++P++ ++Y FRV ++ S S+ + + + P
Sbjct: 188 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSKENPR 239
Score = 62.1 bits (150), Expect = 6e-11
Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 6/127 (4%)
Query: 447 TIRDASNVDTAPYRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWR 503
++ + V ++ + ++K+Q P P+ T+ + L L W
Sbjct: 99 QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN 158
Query: 504 APIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRS 563
++ ++V+ R SW ++ + +Y FRV +
Sbjct: 159 NRFL---NHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCG 215
Query: 564 DPSTTSD 570
S+
Sbjct: 216 SAQHWSE 222
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 75.4 bits (185), Expect = 2e-16
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 14/118 (11%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR-------- 338
P + + + + + C G P P I W +
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 339 -----HHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL-IIMTAPKFNV 390
H + + T+ I+++ D Y CRA N + + V
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVV 133
Score = 52.7 bits (126), Expect = 2e-08
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 16/102 (15%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
F P + G +V + G P P+I W+ + + + +
Sbjct: 20 HMAGFVQAPL---SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 444 AI-------------LTIRDASNVDTAPYRVVAENDLGMDSA 472
+ ++I DT Y A ND +
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHL 118
Score = 35.0 bits (80), Expect = 0.022
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 54 FIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
I + +ED G Y SN T + +
Sbjct: 93 SIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVR 128
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 74.5 bits (183), Expect = 2e-16
Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 8/107 (7%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-----ARHHIFAEGD 346
P I+ + + A C G P PTI W KG + + + G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 347 TYTLIINSVYGVDADE--YVCRAVNK-GGVKSTKAELIIMTAPKFNV 390
+ L I DE YVC A N G S A L + A +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
Score = 49.8 bits (119), Expect = 9e-08
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 389 NVPPRF----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES-----GGHFHVET 439
+ PPR D KGE + G P P I WY+ E +E+ H +
Sbjct: 7 DFPPRIVEHPSDLI-VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 440 SERHAILTIRD--ASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPD 483
S L I S D Y VA N LG S ++++
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 73.6 bits (181), Expect = 3e-16
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 16/111 (14%)
Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFT 537
R D P V+D+ + + W P + + + + I +
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPP----SQPVDGFELTYGIKDVPGDRTTIDLTEDE-N 56
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISL 588
+I L P +YE + + S+P+ + TT G+ A +
Sbjct: 57 QYSIGNLKPDTEYEVSLISRRGDMSSNPAKET--FTT------GLAAALEH 99
Score = 63.6 bits (155), Expect = 1e-12
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 10/106 (9%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTT 147
P ++V ++T T + W PP V + + +P I T +
Sbjct: 3 LDAPSQ-IEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
+ + L EY +++ + P + +
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNPAKET----FTTGLAAALEH 99
Score = 57.8 bits (140), Expect = 1e-10
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
+ P V V ++W P + G+ + + +Q
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+I NL +YE + ++ S P+ +
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNPAKET 88
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 73.2 bits (180), Expect = 3e-16
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTTM 539
D P V ++ S+ + W P + IT Y + + V + T++
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSS-TSV 57
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGEL 578
ITGL+PG +Y VYA S P + TT G
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQESPPLVGT--QTTGGHH 94
Score = 68.2 bits (167), Expect = 2e-14
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 90 GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTTF 148
P L V+ +T + T+ W PP +T Y + + P ++ T+
Sbjct: 3 DAPTD-LQVTNVTDTSITVSWTPPSAT----ITGYRITYTPSNGPGEPKELTVPPSSTSV 57
Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
+ GLT G EY+ V A+ +N PPL G
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQESPPLVGT 87
Score = 62.1 bits (151), Expect = 3e-12
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
P VT V + +SW P + I GY I + + + +
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
I L G +Y VYA + S P +
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPPLVGT 87
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 80.4 bits (197), Expect = 3e-16
Identities = 65/512 (12%), Positives = 133/512 (25%), Gaps = 56/512 (10%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
L + W P V ++ R S T
Sbjct: 4 DDDDKD-LKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHS-------CHPLETTNV 55
Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP-GIPVVTQVGGDFVN 207
+ L+ G ++ + +N L K P P + + +
Sbjct: 56 KIPALSPG-DHEVTINYLNGFQSKFTLN------EKDVSLIPETPEILDLSADFFTSSLL 108
Query: 208 LSWDKPLDDGGSRIQGYW---IDKHEVGSDAWQRVNVAICAPS------QINIPNLIEGR 258
L W+ W + ++ + + + ++
Sbjct: 109 LKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCA 168
Query: 259 QYEFRV-YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT 317
+ + + + S S+ +K+ + E V ++ + N C
Sbjct: 169 THSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSP 228
Query: 318 GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 377
I H++ + ++ V + + +
Sbjct: 229 TKVLSGQIGNTLRPLI------HLYGQTVAIHILNIPVSENSGTNIIFI-TDDDVYGTVV 281
Query: 378 AELIIMTAPKFNVPPRFRDTAYFDKGENVVV---KIPFTGYPKPKITWYRDNEVIESGG- 433
P+ + + + ++ TG P+ T Y E I
Sbjct: 282 FAGYPPDVPQ-KL------SCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSA 334
Query: 434 --HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR--PDPPQFPT 489
H + L ++ + + + N LG + V I +++R P P
Sbjct: 335 VFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLK 394
Query: 490 VEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-----IRVGNTRFTTMAITGL 544
V+DI + W P N+ +E + IR +A+ L
Sbjct: 395 VKDINSTVVTFSWYLPGNFTKINLL-CQIEICKANSKKEVRNATIRGAEDSTYHVAVDKL 453
Query: 545 SPGHQYEFRVYA--ENVYGRSDPSTTSDLITT 574
+P Y FRV + + S S +TT
Sbjct: 454 NPYTAYTFRVRCSSKTFWKWSRWSDEKRHLTT 485
Score = 51.5 bits (122), Expect = 4e-07
Identities = 49/398 (12%), Positives = 101/398 (25%), Gaps = 34/398 (8%)
Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
K T + +W PL ++ I + NV
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETTNVK------ 56
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRN------- 301
IP L G +E + N + + I + +
Sbjct: 57 --IPALSPGD-HEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWND 113
Query: 302 ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD 361
+ H + I P + T + + + + + A
Sbjct: 114 RGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSG----KDTVQHWNWTSDLPLQCAT 169
Query: 362 EYV-CRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY--PKP 418
V R S E + K R +T F + + V+ T
Sbjct: 170 HSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPT 229
Query: 419 KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
K+ + + H + +T + I + + + ++ D + +
Sbjct: 230 KVLSGQIGNTLRPLIHLYGQTV----AIHILNIPVSENSGTNIIFITDDDVYG--TVVFA 283
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDG--GSNITNYIVEKR---EHPMSSWIRVGN 533
PD PQ + E + W G G T Y + + + + I
Sbjct: 284 GYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLT 343
Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDL 571
+ + + F + N G++ + ++
Sbjct: 344 NETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINV 381
Score = 41.9 bits (97), Expect = 5e-04
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
+ D + W AP+ + + ++ R H T +
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHS------CHPLETTNVK 56
Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
I LSPG +E + N + D+
Sbjct: 57 IPALSPGD-HEVTINYLNGFQSKFTLNEKDVSL 88
Score = 31.5 bits (70), Expect = 0.87
Identities = 29/230 (12%), Positives = 61/230 (26%), Gaps = 21/230 (9%)
Query: 57 EIRKEDAGDY--TVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPK 114
+I GD+ T+N N S +++ +P P ++ + L WN
Sbjct: 56 KIPALSPGDHEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRG 115
Query: 115 --YDGGLKVTH--YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ---EYLFHVMAVN 167
T V++ + ++T + + H +++
Sbjct: 116 SALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIR 175
Query: 168 ENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID 227
+ P G SP S N+ + GS + +
Sbjct: 176 WHIDSPHFSGYKEWSDWSPLKNISWIRNTE--------TNVFPQDKVVLAGSNMTICCMS 227
Query: 228 KHEVGSDAWQRVNVAIC----APSQINIPNLIEGRQYEFRVYAQNEAGLS 273
+V S + I+I N+ + + +
Sbjct: 228 PTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVY 277
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 73.2 bits (180), Expect = 4e-16
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTTM 539
PP V +I + + W+ PI I +V S + + ++ T++
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSI-TSL 57
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+T L P YE R+ A N S P +T+ TT
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYSPPVSTT--FTT 90
Score = 71.3 bits (175), Expect = 2e-15
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 91 PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-ICISTTCHDTTFI 149
PP + V+ IT T + W PP L + +V + P + T T+
Sbjct: 4 PPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEG 177
+ L Y ++A N PP+
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPPVST 86
Score = 65.5 bits (160), Expect = 2e-13
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
PP VT + ++W P+ I+G + + + + + +
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ NL YE R+ A+N S P S +
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 73.4 bits (180), Expect = 7e-16
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET-------SERH 443
P + + + G P P + W + V+ E + RH
Sbjct: 3 MPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH 62
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
L + ++V+ Y ++A N G SA + D P
Sbjct: 63 GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107
Score = 67.3 bits (164), Expect = 9e-14
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY---- 348
P + + A++ H+ ++ G P P++ WL + ++
Sbjct: 4 PASV---QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 349 ---TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
L +N V+ Y A N G S M P P
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107
Score = 47.6 bits (113), Expect = 7e-07
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 31 KNGRVVQSDDRFKFTVLDD-------YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83
NG V+ L+ + + + + + G+YT+ +N G S +
Sbjct: 36 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95
Query: 84 NITGLP--GPPIGPLDVSEITKHTCTLHWN 111
P P P+ + T +
Sbjct: 96 AFMDNPFEFNPEDPIPDTNSTSGDPVEKKD 125
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 75.9 bits (186), Expect = 7e-16
Identities = 42/210 (20%), Positives = 70/210 (33%), Gaps = 22/210 (10%)
Query: 91 PPIGPLDVSEITK--HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CISTTCH 144
PP P + T T W P DGGL T+Y + I+ +
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGT-DGGLP-TNYSLTYHREGETLMHECPDYITGGPN 60
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT----Q 200
F Q + + Y+ V A N+ G E + +P PP V +
Sbjct: 61 SCHFGKQYTSMWRTYIMMVNATNQMGSSFSDE---LYVDVTYIVQPDPPLELAVEVKQPE 117
Query: 201 VGGDFVNLSWDKPL---DDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEG 257
++ + W P G Y I + W+ ++ I +L G
Sbjct: 118 DRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA--GQQTEFKILSLHPG 175
Query: 258 RQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
++Y +V + + G S+ S + I+ P
Sbjct: 176 QKYLVQVRCKPDHG--YWSAWSPATFIQIP 203
Score = 54.7 bits (131), Expect = 1e-08
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 11/158 (6%)
Query: 420 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM---DSAIVKI 476
+T++R+ E + ++ + S T V A N +G D V +
Sbjct: 38 LTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDV 97
Query: 477 QISDRPDPPQFPTVE----DIGHDSLALVWRAP-IWDGGSNITN--YIVEKREHPMSSWI 529
+PDPP VE + L + W P + D + Y + + + W
Sbjct: 98 TYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWE 157
Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR-SDPS 566
+ T I L PG +Y +V + +G S S
Sbjct: 158 IHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWS 195
Score = 49.3 bits (117), Expect = 8e-07
Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 10/113 (8%)
Query: 67 TVNLSNSSGSVS---GTFTINITGLPGPPIGP---LDVSEITKHTCTLHWNPPKY---DG 117
VN +N GS + P PP+ + E K + W+PP
Sbjct: 78 MVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKT 137
Query: 118 GLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG 170
G Y + + W I T F + L GQ+YL V ++G
Sbjct: 138 GWFTLLYEIRLKPEKAAEWE-IHFAGQQTEFKILSLHPGQKYLVQVRCKPDHG 189
Score = 35.1 bits (80), Expect = 0.040
Identities = 16/93 (17%), Positives = 21/93 (22%), Gaps = 7/93 (7%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-----IRVGNTRF 536
P P+ ++ WR G TNY + + G
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLP--TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
S Y V A N G S
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELY 94
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 74.5 bits (183), Expect = 1e-15
Identities = 24/196 (12%), Positives = 61/196 (31%), Gaps = 27/196 (13%)
Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTY 348
+ P++ + + N C + + W +
Sbjct: 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------- 51
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
+L I + D+ EY C+ +S L + + +G+ + +
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQ--VNESEPVYLEVFSDWLLLQASA----EVVMEGQPLFL 105
Query: 409 K-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDL 467
+ + + K+ +Y+D E ++ + ++I +A+ D+ Y +
Sbjct: 106 RCHGWRNWDVYKVIYYKDGEALKY--------WYENHNISITNATVEDSGTYYCTGKVWQ 157
Query: 468 G-MDSAIVKIQISDRP 482
+S + I + P
Sbjct: 158 LDYESEPLNITVIKAP 173
Score = 46.8 bits (111), Expect = 3e-06
Identities = 12/114 (10%), Positives = 33/114 (28%), Gaps = 14/114 (12%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQC-TITGCPKPTISWLKGSREIT 334
+ S V + + +++ ++ +C + + K +
Sbjct: 73 VNESEPVYL----EVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK 128
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPK 387
+H + I + D+ Y C +S + ++ AP+
Sbjct: 129 YWYENH--------NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174
Score = 34.5 bits (79), Expect = 0.045
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 2 PNALYIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
+A + EG ++ + +V K+G ++ + I I
Sbjct: 92 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATV 143
Query: 61 EDAGDYTVNLSNSSGSV-SGTFTINITGLP 89
ED+G Y S I + P
Sbjct: 144 EDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 28.3 bits (63), Expect = 4.5
Identities = 8/71 (11%), Positives = 20/71 (28%), Gaps = 14/71 (19%)
Query: 23 QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
+ NG + + + + I + ED+G+Y + S
Sbjct: 33 EVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQVNESE----P 78
Query: 83 INITGLPGPPI 93
+ + +
Sbjct: 79 VYLEVFSDWLL 89
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 72.0 bits (177), Expect = 1e-15
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
+ V + + Q +C + +I+WL+ ++ S R I E +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE----EVE 57
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
+ D+ Y C + G +T + + A
Sbjct: 58 VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
Score = 64.0 bits (156), Expect = 6e-13
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
++ V + G+ + ++ I W RD + + E
Sbjct: 2 SSGSSGVEVE---SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE-- 55
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
+ ++D+ D+ Y V + G D+ + +SD
Sbjct: 56 --VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95
Score = 55.1 bits (133), Expect = 8e-10
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFT--VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77
D ++ ++G + +R + T ++ +++ D+G Y S+ SGS
Sbjct: 27 LRDDVQSINWLRDGVQLAESNRTRITGEEVE------VQDSVPADSGLYACVTSSPSGSD 80
Query: 78 SGTFTINITGLPGPPIGP 95
+ F++N++ P GP
Sbjct: 81 TTYFSVNVS--DALPSGP 96
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 75.6 bits (185), Expect = 4e-15
Identities = 27/214 (12%), Positives = 56/214 (26%), Gaps = 33/214 (15%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGC-PKP---TISWLKGSREITPSARHHIFAEGDT 347
A + + + T+ G P P T +W K + +T
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE----------NNT 51
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MTAPKFNVPPRFR-----DTAY 399
TL + +A Y + + S ++E+ + P+
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 400 FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY 459
+ +W + +VI++ +TI++ + Y
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDTT-----------QDITIQEFTADKNGVY 160
Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDI 493
V + +A +I VE
Sbjct: 161 TVKVWGESEDSAASASTKIMLATMNVDQDVVESK 194
Score = 72.2 bits (176), Expect = 4e-14
Identities = 36/270 (13%), Positives = 71/270 (26%), Gaps = 42/270 (15%)
Query: 236 WQRVNVAIC-APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPE 294
W + + + + + + ++V Q+ ++ S ++ +
Sbjct: 40 WTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL-----IV 94
Query: 295 IIVPLRNANAIQNHNAQFQCTI---TGCPKP-----TISWLKGSREITPSARHHIFAEGD 346
I ++ + + T+ G SW KG I
Sbjct: 95 NITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-----------DT 143
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD-------TAY 399
T + I Y + + + A IM A
Sbjct: 144 TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEIS 203
Query: 400 FDKGENVVVKIPFTGYPKPKIT--WYRDNE--------VIESGGHFHVETSERHAILTIR 449
+ + + +G P I WY E E G + L
Sbjct: 204 LNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKE 263
Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
A+ DTA + VA+ ++ V++ S
Sbjct: 264 SATYDDTAKFWCVAKLYQQIEDETVEVAAS 293
Score = 49.4 bits (117), Expect = 1e-06
Identities = 36/266 (13%), Positives = 73/266 (27%), Gaps = 38/266 (14%)
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDF 205
T V T + V + + M + ++ + P V+
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS--QTD 109
Query: 206 VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY 265
V L G + Y + +W + I I I + + V
Sbjct: 110 VELHATVKFSGGKTPADNYEL------HYSWSKGEDVIDTTQDITIQEFTADKNGVYTVK 163
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI--------T 317
E+ S ++++++ + M + + + + +
Sbjct: 164 VWGESEDS--AASASTKIMLATMNVDQD----VVESKTVALGNEISLNYVVSEDIVGDSS 217
Query: 318 GCPKPTISW-------------LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYV 364
G P TI + L GS I +G L S D ++
Sbjct: 218 GMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH---LFKESATYDDTAKFW 274
Query: 365 CRAVNKGGVKSTKAELIIMTAPKFNV 390
C A ++ E+ T+ K ++
Sbjct: 275 CVAKLYQQIEDETVEVAASTSRKCSM 300
Score = 37.1 bits (85), Expect = 0.013
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 45 TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGP--LDVSEIT 102
V+D I I+E + G YTV + S + + + I +
Sbjct: 139 DVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVAL 198
Query: 103 KHTCTLHW 110
+ +L++
Sbjct: 199 GNEISLNY 206
Score = 35.2 bits (80), Expect = 0.055
Identities = 35/229 (15%), Positives = 69/229 (30%), Gaps = 33/229 (14%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLT----KNGRVVQSDDRFKFTVLDDYIIIFIKE 57
N GD + AGD+P+ +LT K+ + +++ + + +
Sbjct: 9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA----------TLTVAD 58
Query: 58 IRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPI---GPLDVSEITKHTCTLHWNPPK 114
E+AG Y V + ++ S + + + P ++ LH
Sbjct: 59 ATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKF 118
Query: 115 YDG----GLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG 170
G HY + + I TT +Q T + ++ V E+
Sbjct: 119 SGGKTPADNYELHYSWSKGEDV------IDTT---QDITIQEFTADKNGVYTVKVWGESE 169
Query: 171 MGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGS 219
K + T G+ ++L++ D G
Sbjct: 170 DS---AASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGD 215
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 70.7 bits (173), Expect = 5e-15
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 14/124 (11%)
Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIE 430
G + L + P + T + GE +K P P +I W V+E
Sbjct: 1 GSSGSSGTLTVNGPPIISSTQ----TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLE 56
Query: 431 SG--GHFHVETSERH----AILTIRDASNVDTA-PYRVVAENDLGMDSAIV--KIQISDR 481
SG G + VET + LTI + D Y A N G D+ I+ K Q S+
Sbjct: 57 SGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116
Query: 482 PDPP 485
P
Sbjct: 117 SGPS 120
Score = 66.8 bits (163), Expect = 1e-13
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHI------FA 343
P II + +A+ Q +C I P P I+W +
Sbjct: 12 NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 344 EGDTYTLIINSVYGVD-ADEYVCRAVNKGGVKSTKAELIIMTAP 386
EG TL I+++ D Y C A N G + L +
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
Score = 43.7 bits (103), Expect = 1e-05
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 10/103 (9%)
Query: 2 PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKNGRVVQSDDRFKFTVLDDYI------IIF 54
+ G+ ++K F P ++ + V++S ++TV +
Sbjct: 20 TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLT 79
Query: 55 IKEIRKEDAGD-YTVNLSNSSGSVSGTFTINITG--LPGPPIG 94
I I + D Y NS GS + + G + GP G
Sbjct: 80 ISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 69.8 bits (171), Expect = 6e-15
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTTM 539
P+ V ++ DSL L W AP + +++++ +E + V + +
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAP----DAAFDSFMIQYQESEKVGEAINLTVPGSE-RSY 57
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+TGL PG +Y +Y RS+P +
Sbjct: 58 DLTGLKPGTEYTVSIYGVKGGHRSNPLSAE 87
Score = 61.7 bits (150), Expect = 4e-12
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 91 PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP-HWICISTTCHDTTFI 149
P L VSE+T+ + L W P D ++++ ++ I ++ + ++
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAP--DAA--FDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEG 177
+ GL G EY + V PL
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNPLSA 86
Score = 54.8 bits (132), Expect = 1e-09
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
P VV++V D + LSW P + + I E + ++
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDL 59
Query: 252 PNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
L G +Y +Y S P SA
Sbjct: 60 TGLKPGTEYTVSIYGVKGGHRSNPLSAE 87
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 71.8 bits (176), Expect = 7e-15
Identities = 26/190 (13%), Positives = 62/190 (32%), Gaps = 27/190 (14%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLI 351
+ + + + ++ + +C P+ + W I+ A +
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS----------SYF 57
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-I 410
I++ D+ EY C+ S +L + PR F + + + ++
Sbjct: 58 IDAATVNDSGEYRCQT--NLSTLSDPVQLEVHIGWLLLQAPR----WVFKEEDPIHLRCH 111
Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG-M 469
+ K+T+ ++ + + H ++ I A+ D+ Y +
Sbjct: 112 SWKNTALHKVTYLQNGKDRKYFHH--------NSDFHIPKATLKDSGSYFCRGLVGSKNV 163
Query: 470 DSAIVKIQIS 479
S V I I+
Sbjct: 164 SSETVNITIT 173
Score = 33.3 bits (76), Expect = 0.11
Identities = 21/169 (12%), Positives = 47/169 (27%), Gaps = 23/169 (13%)
Query: 402 KGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
+ ++V +K P+ W+ + +I S + + I A+ D+ YR
Sbjct: 21 EKDSVTLKCQGAYSPEDNSTQWFHNESLI----------SSQASSYFIDAATVNDSGEYR 70
Query: 461 VVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEK 520
S V++++ Q P D + L + + + +
Sbjct: 71 CQTNL--STLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHS---WKNTALHKVTYLQ 125
Query: 521 REHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYG--RSDPST 567
+ N+ F I + + S+
Sbjct: 126 NGKDRKYF--HHNSDFH---IPKATLKDSGSYFCRGLVGSKNVSSETVN 169
Score = 32.1 bits (73), Expect = 0.27
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 6 YIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
E D ++ + +V+ +NG+ + I + +D+G
Sbjct: 99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNS--------DFHIPKATLKDSG 150
Query: 65 DYTVNLSNSSGSV-SGTFTINIT 86
Y S +V S T I IT
Sbjct: 151 SYFCRGLVGSKNVSSETVNITIT 173
Score = 30.2 bits (68), Expect = 1.3
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 12/76 (15%)
Query: 23 QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
+ N ++ S FI D+G+Y + S+ S
Sbjct: 36 EDNSTQWFHNESLISSQAS----------SYFIDAATVNDSGEYRCQTNLSTLSDP--VQ 83
Query: 83 INITGLPGPPIGPLDV 98
+ + P V
Sbjct: 84 LEVHIGWLLLQAPRWV 99
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 69.0 bits (169), Expect = 1e-14
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH--PMSSWIRVGNTRFTTMA 540
D P+ D+ DS+ + W +P ++ Y V + + T
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58
Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ GL PG +Y V A + S P + +T
Sbjct: 59 LQGLRPGSEYTVSVVALHDDMESQPLIGT--QST 90
Score = 62.4 bits (152), Expect = 2e-12
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS-MPHWICISTTCHDTTFIVQGLT 154
L +++ + + W P+ V+ Y V H + + + T +QGL
Sbjct: 8 LAFTDVDVDSIKIAWESPQGQ----VSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLR 63
Query: 155 EGQEYLFHVMAVNENGMGPPLEG 177
G EY V+A++++ PL G
Sbjct: 64 PGSEYTVSVVALHDDMESQPLIG 86
Score = 58.6 bits (142), Expect = 5e-11
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
+ P G+ T V D + ++W+ P ++ Y + +
Sbjct: 1 NIDRPKGL-AFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEED 55
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
+ L G +Y V A ++ S P + S
Sbjct: 56 TAELQGLRPGSEYTVSVVALHDDMESQPLIGTQS 89
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 70.0 bits (171), Expect = 1e-14
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 12/111 (10%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCP---KPTISWLKGS-REITPSARHHI--- 341
+ I + + F + KPTI W KG ++ A H+
Sbjct: 4 GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK 63
Query: 342 -----FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
+ T+ + I A Y C K S +L + +
Sbjct: 64 ETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114
Score = 52.7 bits (126), Expect = 1e-08
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 15/115 (13%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYP---KPKITWYRDNEV---IESGGHFHV 437
+ F P+ GE++ KP I W++ + ++G H +
Sbjct: 6 SGILFIEKPQ---GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62
Query: 438 E------TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
+ + + I A + YR DS +++ +
Sbjct: 63 KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117
Score = 41.1 bits (96), Expect = 1e-04
Identities = 11/63 (17%), Positives = 25/63 (39%)
Query: 30 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
+K G+ +Q + F+ + I + + AG+Y ++ S +F + +
Sbjct: 54 SKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
Query: 90 GPP 92
G
Sbjct: 114 GTT 116
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 69.8 bits (171), Expect = 1e-14
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 12/111 (10%)
Query: 478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT 537
S PD P ++ L W+ P + + Y ++
Sbjct: 4 GSSGPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPGSAV 59
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISL 588
+ L Y V + P++ + TT G+EAP L
Sbjct: 60 DYPLHDLVLHTNYTATVRGLRGPNLTSPASIT--FTT------GLEAPRDL 102
Score = 57.1 bits (138), Expect = 2e-10
Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 10/118 (8%)
Query: 85 ITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCH 144
+ P P L +T+ LHW PP+ V Y ++ P T
Sbjct: 4 GSSGPDGPTQ-LRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQ-AETPGS 57
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVG 202
+ + L Y V + + P I + + P VT G
Sbjct: 58 AVDYPLHDLVLHTNYTATVRGLRGPNLTSPA----SITFTTGLEAPRDLEAKEVTPSG 111
Score = 52.8 bits (127), Expect = 8e-09
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
P P + F L W P + + Y I G+ Q +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPG--SAVD 60
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ +L+ Y V L+ P+S +
Sbjct: 61 YPLHDLVLHTNYTATVRGLRGPNLTSPASIT 91
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 73.6 bits (180), Expect = 1e-14
Identities = 32/299 (10%), Positives = 75/299 (25%), Gaps = 50/299 (16%)
Query: 190 PSPPGI--PVVTQVGGDFVNL----SWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI 243
+PP + P V +V + P+ + +++ D+ + + + +
Sbjct: 4 ATPPQLVSPRVLEVDTQ-GTVVCSLDGLFPVSE--AQVHLALGDQRLNPTVTYGNDSFSA 60
Query: 244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNAN 303
+ +V I P V L
Sbjct: 61 ---KASVSVTAEDEGTQRLTCAVILGNQ---SQETLQTVTIYSF-----PAPNVILTKPE 109
Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
+ +C K T++ + G L++ + + +
Sbjct: 110 VSEGTEVTVKCEAHPRAKVTLNGVPAQ------------PLGPRAQLLLKATPEDNGRSF 157
Query: 364 VCRAVN----KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK 419
C A + K+ EL ++ P+ + + + + G P P+
Sbjct: 158 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTW-PENSQQTPMCQAWGNPLPE 216
Query: 420 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+ +D G + Y A + G + V + +
Sbjct: 217 LKCLKDGTFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 33.9 bits (77), Expect = 0.11
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 13/84 (15%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P PE G+ E+ K+G + ++
Sbjct: 192 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------------SVTVTRD 238
Query: 62 DAGDYTVNLSNSSGSVSGTFTINI 85
G Y ++ G V+ T+N+
Sbjct: 239 LEGTYLCRARSTQGEVTREVTVNV 262
Score = 30.8 bits (69), Expect = 1.1
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 12/79 (15%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
GDQ + ++T + T D E T + + S
Sbjct: 43 GDQRLNPTVTYGNDSFSAKASVSVTAED------------EGTQRLTCAVILGNQSQETL 90
Query: 81 FTINITGLPGPPIGPLDVS 99
T+ I P P +
Sbjct: 91 QTVTIYSFPAPNVILTKPE 109
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 71.8 bits (176), Expect = 2e-14
Identities = 26/178 (14%), Positives = 57/178 (32%), Gaps = 27/178 (15%)
Query: 312 FQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370
+C P+ + W I+ A + I++ D+ EY C+ +
Sbjct: 27 LKCQGAYSPEDQSTQWFHNESLISSQAS----------SYFIDAATVDDSGEYRCQT--Q 74
Query: 371 GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVI 429
S +L + PR F + + + ++ + K+T+ ++ +
Sbjct: 75 LSTLSDPVQLEVHIGWLLLQAPR----WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGR 130
Query: 430 ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQ 486
+ H ++ I A+ D+ Y + S V+I I+
Sbjct: 131 KYFHH--------NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180
Score = 34.1 bits (78), Expect = 0.079
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 6 YIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
E D ++ + +V+ +NG+ + +I + +D+G
Sbjct: 99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY--------FHHNSDFYIPKATLKDSG 150
Query: 65 DYTVNLSNSSGSV-SGTFTINITGLPGPP 92
Y S +V S T I IT
Sbjct: 151 SYFCRGLVGSKNVSSETVQITITQGLAVS 179
Score = 33.7 bits (77), Expect = 0.11
Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 14/109 (12%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREIT 334
S+ S+ VQ++ +++ + +C +++L+ +
Sbjct: 76 STLSDPVQLE----VHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK 131
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELII 382
I D+ Y CR + V S ++ I
Sbjct: 132 YF--------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172
Score = 27.9 bits (62), Expect = 7.9
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 12/76 (15%)
Query: 23 QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
+ N ++ S FI +D+G+Y S+ S
Sbjct: 36 EDQSTQWFHNESLISSQAS----------SYFIDAATVDDSGEYRCQTQLSTLSDP--VQ 83
Query: 83 INITGLPGPPIGPLDV 98
+ + P V
Sbjct: 84 LEVHIGWLLLQAPRWV 99
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 69.0 bits (169), Expect = 2e-14
Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW--IRVGNTRFTTM 539
P V SL+L W P G + +Y V+ E +R T
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ GL G Y +V A + G T
Sbjct: 67 ELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ 101
Score = 67.5 bits (165), Expect = 4e-14
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
S P VT+ ++L+W P G + Y + HE G++ V
Sbjct: 1 GSSGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFL 59
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQ 283
+ ++ + L G Y +V A++EAG P + Q
Sbjct: 60 KTSENRAELRGLKRGASYLVQVRARSEAGYG-PFGQEHHSQ 99
Score = 58.2 bits (141), Expect = 9e-11
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVE--RRDISMPHWICISTTCHDT 146
P + V+ + + +L W P+ G V Y V+ + P + T +
Sbjct: 8 PPAV-SDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKT-SEN 64
Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPP 174
++GL G YL V A +E G GP
Sbjct: 65 RAELRGLKRGASYLVQVRARSEAGYGPF 92
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 68.6 bits (168), Expect = 2e-14
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
+ P+ +++ + L W P Y++ + + T+ +
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLPGGITSHQL 63
Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
GL P Y R+ A P +TS TT G
Sbjct: 64 LGLFPSTSYNARLQAMWGQSLLPPVSTS--FTTGG 96
Score = 61.3 bits (149), Expect = 6e-12
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 84 NITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC 143
+ + P L+ E+T T L W P ++ Y++ I
Sbjct: 3 SGSSGLEAPRD-LEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQ-EILLPG 56
Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
T+ + GL Y + A+ + PP+
Sbjct: 57 GITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91
Score = 53.2 bits (128), Expect = 4e-09
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
P +V L+W +P R GY + H G Q + + +
Sbjct: 7 GLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQ-TQEILLP-GGITS 60
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ L Y R+ A L P S S
Sbjct: 61 HQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 71.3 bits (174), Expect = 2e-14
Identities = 29/209 (13%), Positives = 58/209 (27%), Gaps = 23/209 (11%)
Query: 95 PLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGL 153
P +V L W P + G + + + C+ TT T L
Sbjct: 5 PENVRMNSVNFKNILQWESPAFAKG--QLTFTAQYLSYRIFQDKCMQTT--LTECDFSSL 60
Query: 154 TEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKP 213
++ ++ V A + ++ SP D + +V D +++ + P
Sbjct: 61 SKYGDHTLRVRAEFADEHSDWVQ-----ITFSPVDDTIIGPPGMQVEVLADCLHMRFLAP 115
Query: 214 LDDGGSRIQ---------GYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
+ Y + + G+D ++ + NL Y +V
Sbjct: 116 KIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITP---QYDFEVLRNLEPWTTYCVQV 172
Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAP 293
+ S V + P
Sbjct: 173 RGFLP-DRNKAGEWSEPVCEQTTHDETVP 200
Score = 44.0 bits (103), Expect = 4e-05
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITG 543
PP+ + + + L W +P + G + + + + + T T +
Sbjct: 4 PPENVRMNSV-NFKNILQWESPAFAKGQ--LTFTAQYLSYRIFQD-KCMQTTLTECDFSS 59
Query: 544 LSPGHQYEFRVYAENVYGRSDPSTTS 569
LS + RV AE SD +
Sbjct: 60 LSKYGDHTLRVRAEFADEHSDWVQIT 85
Score = 40.9 bits (95), Expect = 5e-04
Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 12/126 (9%)
Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGH-DSLALVWRAPIWDGGS------ 511
RV AE + P ++ D L + + AP +
Sbjct: 68 LRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTMK 127
Query: 512 ---NITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTT 568
N Y V+ + ++ ++ + L P Y +V + R+
Sbjct: 128 NVYNSWTYNVQYWKQGTDEKFQI-TPQYDFEVLRNLEPWTTYCVQVRGF-LPDRNKAGEW 185
Query: 569 SDLITT 574
S+ +
Sbjct: 186 SEPVCE 191
Score = 34.7 bits (79), Expect = 0.049
Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 14/115 (12%)
Query: 68 VNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH---- 123
S V TF+ + GPP ++V + + PK + +
Sbjct: 73 EFADEHSDWVQITFSPVDDTIIGPPGMQVEVLA---DCLHMRFLAPKIENEYETWTMKNV 129
Query: 124 -----YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP 173
Y V+ I+ +++ L Y V +
Sbjct: 130 YNSWTYNVQYWKQGTDEKFQITPQ--YDFEVLRNLEPWTTYCVQVRGFLPDRNKA 182
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 73.4 bits (179), Expect = 2e-14
Identities = 34/216 (15%), Positives = 59/216 (27%), Gaps = 16/216 (7%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH-----YVVE 127
SS +FT GPP L+ + +H +P D + Y +
Sbjct: 86 SSWYEVDSFTPFRKAQIGPPEVHLEAED---KAIVIHISPGTKDSVMWALDGLSFTYSLV 142
Query: 128 RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
S I + + L+ Y V A K+
Sbjct: 143 IWKNSSGVEERIENI--YSRHKIYKLSPETTYCLKVKAALLTSWKIG-VYSPVHCIKTTV 199
Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ---GYWIDKHEVGSDAWQRVNVA-- 242
+ PP + V L WD + ++Q + W+++
Sbjct: 200 ENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCEN 259
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
+ + N+ + Y RV A + S S
Sbjct: 260 VKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEE 295
Score = 71.5 bits (174), Expect = 8e-14
Identities = 36/223 (16%), Positives = 63/223 (28%), Gaps = 22/223 (9%)
Query: 95 PLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CISTTCHDTTFI 149
P V +I L WN G + + + M +WI C + T F
Sbjct: 7 PQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 64
Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLS 209
L +E + A EN + + +P+ K V + + +
Sbjct: 65 SLKLNVYEEIKLRIRAEKENTSSW-----YEVDSFTPFRKAQIGPPEVHLEAEDKAIVIH 119
Query: 210 WDKPLDDGGSR-----IQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
D Y + + S +R+ S+ I L Y +V
Sbjct: 120 ISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIEN---IYSRHKIYKLSPETTYCLKV 176
Query: 265 YAQNEAG--LSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI 305
A + + S + I V ++N N +
Sbjct: 177 KAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV 219
Score = 52.2 bits (124), Expect = 2e-07
Identities = 26/228 (11%), Positives = 61/228 (26%), Gaps = 24/228 (10%)
Query: 366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 425
RA + + + PP A + + +V+ + K + W D
Sbjct: 79 RAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEA---EDKAIVIH--ISPGTKDSVMWALD 133
Query: 426 NEVIESGGHFHVETSERHAILTIRDASNVDT-----APYRVVAE------NDLGMDSAIV 474
+S + + + Y + + +G+ S +
Sbjct: 134 GLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVH 193
Query: 475 KIQI-SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNI---TNYIVEKREHPMSSWIR 530
I+ + PP + + + L W + + ++ + + W +
Sbjct: 194 CIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQ 253
Query: 531 VGNTRFTT----MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ + + + Y RV A + S S T
Sbjct: 254 IPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTE 301
Score = 47.6 bits (112), Expect = 6e-06
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 8/137 (5%)
Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGH-DSLALVWRAP-----IWDGGSNI 513
R+ AE + V R P V ++ + +W
Sbjct: 77 RIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 136
Query: 514 TNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
Y + ++ R+ ++ I LSP Y +V A S +
Sbjct: 137 FTYSLVIWKNSSGVEERI-ENIYSRHKIYKLSPETTYCLKVKAAL-LTSWKIGVYSPVHC 194
Query: 574 TYGELLSGMEAPISLIT 590
+ + + P ++
Sbjct: 195 IKTTVENELPPPENIEV 211
Score = 46.8 bits (110), Expect = 1e-05
Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 8/112 (7%)
Query: 72 NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKV---THYVVER 128
G S I T P + L W+ + +V ++
Sbjct: 184 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRN 243
Query: 129 RDISMPHWICISTTCHDTT----FIVQGLTEGQEYLFHVMAVNENGMGPPLE 176
+ W I C + Q + + YL V A + N E
Sbjct: 244 PGNHLYKWKQIPD-CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSE 294
Score = 40.3 bits (93), Expect = 0.001
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTT 538
+D PQ V+ I + + L W G+ + + ++ M +WI++ + T
Sbjct: 1 ADPLKSPQKVEVDIIDDNFI-LRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNIT 57
Query: 539 -----MAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+ L+ + + R+ AE S
Sbjct: 58 STKCNFSSLKLNVYEEIKLRIRAEK-ENTSSWYEVD 92
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 69.4 bits (169), Expect = 2e-14
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 31/127 (24%)
Query: 385 APKFNVPP--RFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE--------------- 427
PK ++ R DT G + + +P +G P P + W +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 428 --------------VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAI 473
+ E+ G VET++ +I T+ A D Y V +N +G D
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 132
Query: 474 VKIQISD 480
+ +++ D
Sbjct: 133 LTVKVID 139
Score = 51.3 bits (122), Expect = 5e-08
Identities = 15/126 (11%), Positives = 29/126 (23%), Gaps = 34/126 (26%)
Query: 292 APEIIVPL-----RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA--------- 337
P+I + + + + I+G P PT+ W K + +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 338 --------------------RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 377
R + D + D Y N G
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 132
Query: 378 AELIIM 383
+ ++
Sbjct: 133 LTVKVI 138
Score = 49.7 bits (118), Expect = 2e-07
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 29/115 (25%)
Query: 1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--------------------------- 33
+P+ + + G+ ++ + +GD V K
Sbjct: 24 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 83
Query: 34 --RVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86
+ +++ R + D I ++ KED G YTV + N G T+ +
Sbjct: 84 KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Score = 27.4 bits (60), Expect = 8.4
Identities = 15/91 (16%), Positives = 27/91 (29%)
Query: 80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICI 139
+ I+G P P + D G ++ + +
Sbjct: 37 RLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRV 96
Query: 140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENG 170
TT + F V+G + E ++ V N G
Sbjct: 97 ETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG 127
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 67.5 bits (165), Expect = 3e-14
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRF 536
+V +I S + W + ++ + VE + + +T
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTA- 58
Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
T++ I L PG +Y VY + G ++ T
Sbjct: 59 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 65.6 bits (160), Expect = 2e-13
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
P VT++ +SW D + G+ ++ +
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
+ +NIP+L+ GR+Y VY +E G +++
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQ 93
Score = 62.9 bits (153), Expect = 1e-12
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-ICISTTCHD 145
G V+EIT + + W V+ + VE +
Sbjct: 4 GSHLVATS-ESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPSTA 58
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
T+ + L G++Y+ +V ++E+G + +
Sbjct: 59 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 94
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 67.4 bits (165), Expect = 3e-14
Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 10/97 (10%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
+I V + + QC G P P W K +T + ++
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------LYMV 54
Query: 353 NSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKF 388
V Y C N S K E+II
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 55.4 bits (134), Expect = 5e-10
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 13/101 (12%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
+ + V P + G +V++ G P P W+++ + T E
Sbjct: 2 SKLQICVEPT---SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETK 49
Query: 444 AILTIRDASNVDTAPYRVVAENDLGM-DSAIVKIQISDRPD 483
+ + Y ND DS V+I I + +
Sbjct: 50 KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 90
Score = 35.4 bits (82), Expect = 0.006
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 10/89 (11%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P + + G ++ G KN + + + + + + E
Sbjct: 10 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYM---------VPYVDLE 60
Query: 62 DAGDYTVNLSNSSGSV-SGTFTINITGLP 89
G Y ++ N S S I I L
Sbjct: 61 HQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 67.4 bits (165), Expect = 4e-14
Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 9/97 (9%)
Query: 286 DPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG 345
+ +++V C + P P I W+K +
Sbjct: 4 GSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP------ 57
Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
LI+ + D Y C A + + I
Sbjct: 58 ---VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 49.7 bits (119), Expect = 6e-08
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 14/103 (13%)
Query: 378 AELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 437
+ + + V P G V + P P+I W +D +
Sbjct: 3 SGSSGLEEVQLVVEPE---GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---- 55
Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLGM--DSAIVKIQI 478
+L + + D Y VA + +S V I I
Sbjct: 56 -----SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 33.5 bits (77), Expect = 0.035
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 30 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86
K+G + VL + EI +D G Y+ ++SS + ++I+
Sbjct: 45 MKDGVPLPLPPS---PVL------ILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 69.5 bits (170), Expect = 5e-14
Identities = 25/193 (12%), Positives = 55/193 (28%), Gaps = 34/193 (17%)
Query: 303 NAIQNHNAQFQCTI--TGCPKPTISWLKGSREIT------------PSARHHIFAEGDTY 348
+ I W K S + + +F G
Sbjct: 10 WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG--- 66
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
TL I + D D Y + G + + K ++ N +
Sbjct: 67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISW--TCINTTL 120
Query: 409 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
P++ Y+D + H++ S+R + + +A ++ A N +
Sbjct: 121 TCEVMNGTDPELNLYQDGK--------HLKLSQR---VITHKWTTSLSAKFKCTAGNKVS 169
Query: 469 MDSAIVKIQISDR 481
+S++ + ++
Sbjct: 170 KESSVEPVSCPEK 182
Score = 44.9 bits (106), Expect = 2e-05
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 403 GENVVVKIPF--TGYPKPKITWYRDNEVIE----SGGHFHVETSERHAI-----LTIRDA 451
G+++ + IP I W + ++ + + + + + L I+
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 452 SNVDTAPYRVVAENDLGMDSAIVKIQIS--DRPDPPQ 486
D Y+V + G + + +R P+
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK 110
Score = 42.6 bits (100), Expect = 9e-05
Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 6 YIPEGDNTK-VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
D+ +K D+ K + D +K + + + IK ++ +D
Sbjct: 23 SFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK--LFKNGTLK-IKHLKTDDQD 79
Query: 65 DYTVNLSNSSGSVSGTFTINITGLPGPP 92
Y V++ ++ G ++
Sbjct: 80 IYKVSIYDTKGKNVLEKIFDLKIQERVS 107
Score = 32.9 bits (75), Expect = 0.17
Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 11/79 (13%)
Query: 9 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTV 68
NT + E++L ++G+ ++ R + + + +
Sbjct: 114 TCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFKC 162
Query: 69 NLSNSSGSVSGTFTINITG 87
N S ++
Sbjct: 163 TAGNKVSKESSVEPVSCPE 181
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 67.4 bits (165), Expect = 5e-14
Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 9/112 (8%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
P L S+++ + W V V H +
Sbjct: 4 GSSGLAPPRHLGFSDVSHDAARVFWEGAPRP----VRLVRVTYVSSEGGHSGQTEAPGNA 59
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPV 197
T+ ++ L+ Y V + G L G K PSP P
Sbjct: 60 TSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTK-----KAPSPSSGPS 106
Score = 67.1 bits (164), Expect = 7e-14
Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 11/96 (11%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV---GNTRFTT 538
PP+ D+ HD+ + W + V + GN
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGA----PRPVRLVRVTYVSSEGGHSGQTEAPGNATSAM 63
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ LS Y RV G S T +TT
Sbjct: 64 --LGPLSSSTTYTVRVTCLYPGGGSSTLTGR--VTT 95
Score = 57.8 bits (140), Expect = 1e-10
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 5/90 (5%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
+PP + V D + W+ ++ + + +
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAP-GNATSA 62
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ L Y RV G S +
Sbjct: 63 MLGPLSSSTTYTVRVTCLYPGGGSSTLTGR 92
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 70.3 bits (171), Expect = 6e-14
Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 22/216 (10%)
Query: 85 ITGLPGPPIGPLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CI 139
+ + G P +++ L W PP+ G+KVT Y V+ W+ C
Sbjct: 2 VPCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECR 60
Query: 140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT 199
+ + +Y V A+ E + PP + + T
Sbjct: 61 NINRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLET--QIGPPEVALTT 118
Query: 200 QVGGDFVNLSWDKPLDDGGSRIQ----------GYWIDKHEVGSDAWQRVNVAICAPSQI 249
V L+ + + Y + S+ V +
Sbjct: 119 DEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNH---TL 175
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
+ L Y V + G + S +
Sbjct: 176 VLTWLEPNTLYCVHVESFVP-GPPRRAQPSEKQCAR 210
Score = 47.2 bits (111), Expect = 4e-06
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 7/95 (7%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTRFTTMA 540
P T I + L W P Y V+ + W+ N T
Sbjct: 11 KPANITFLSI-NMKNVLQWTPPE-GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCD 68
Query: 541 IT--GLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
++ HQY RV A S + +
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYP 103
Score = 33.3 bits (75), Expect = 0.17
Identities = 22/147 (14%), Positives = 37/147 (25%), Gaps = 21/147 (14%)
Query: 447 TIRDASNVDTAPY-----RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGH--DSLA 499
T D S + RV A + + P + S++
Sbjct: 65 TYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSIS 124
Query: 500 LVWRAP----IWDGGSNIT--------NYIVEKREHPMSSWIRVGNTRFTTMAITGLSPG 547
+V AP ++ Y V + T+ +T L P
Sbjct: 125 VVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQ-CVTNHTLVLTWLEPN 183
Query: 548 HQYEFRVYAENVYGRSDPSTTSDLITT 574
Y V + V G + S+
Sbjct: 184 TLYCVHVESF-VPGPPRRAQPSEKQCA 209
Score = 32.9 bits (74), Expect = 0.22
Identities = 26/135 (19%), Positives = 39/135 (28%), Gaps = 16/135 (11%)
Query: 71 SNSSGSVSGTFTINITGLPGPPIGPLDVSEITKH-TCTLHWNPPKYDGGLKVTH------ 123
S + SG F + GPP L E + T + L V+
Sbjct: 91 KCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSN 150
Query: 124 --YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNE--NGMGPPLEGIN 179
Y V + T + T ++ L Y HV + P E
Sbjct: 151 LKYNVSVLNTKSNRTWSQCVT--NHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSE--- 205
Query: 180 PIKAKSPYDKPSPPG 194
A++ D+ S G
Sbjct: 206 KQCARTLKDQSSIEG 220
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 67.1 bits (164), Expect = 7e-14
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNT 534
S PP + DSL + W P + +Y + + V
Sbjct: 4 GSSGRSPPSNLALASETPDSLQVSWTPP----LGRVLHYWLTYAPASGLGPEKSVSVPGA 59
Query: 535 RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
R + + + L +Y V A GRS+ + +
Sbjct: 60 R-SHVTLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93
Score = 60.2 bits (146), Expect = 2e-11
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 85 ITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTC 143
+ PP L ++ T + + W PP G +V HY + S +S
Sbjct: 4 GSSGRSPPSN-LALASETPDSLQVSWTPP--LG--RVLHYWLTYAPASGLGPEKSVSVPG 58
Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
+ + L +Y V A+ G +
Sbjct: 59 ARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93
Score = 60.2 bits (146), Expect = 2e-11
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
SPP + D + +SW P R+ YW+ ++ A S +
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPP----LGRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+P+L +Y V A AG S SA+
Sbjct: 64 TLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 70.7 bits (172), Expect = 7e-14
Identities = 34/236 (14%), Positives = 70/236 (29%), Gaps = 11/236 (4%)
Query: 343 AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDK 402
A T ++ + ++ V E + V + + +A T ++ A D
Sbjct: 9 AAEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTL-NYDENAFEYVEAISDD 67
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGG----HFHVETSERHAILTIRDASNVDTAP 458
G V K G + ++ + E + L++ ++S D
Sbjct: 68 GVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEG 127
Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
+ I +P + +I ++ + W P G + YI+
Sbjct: 128 LVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYIL 185
Query: 519 EKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
K + T+ L+ Y F++ A+ G + L T
Sbjct: 186 YKDG----KKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTA 237
Score = 69.6 bits (169), Expect = 2e-13
Identities = 23/176 (13%), Positives = 57/176 (32%), Gaps = 12/176 (6%)
Query: 9 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTV 68
+ ++ KV++ + + + + + + + + D
Sbjct: 75 KIEDGKVRVLVSSLTGEPL--PAKEVLAKV--VLRAEAKTEGSNLSVTNSSVGDGEGLVH 130
Query: 69 NLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
++ + +V+ + + P SEI K T+ W P+ G + Y++ +
Sbjct: 131 EIAGTEKTVNIIEGTSPEIVVNPVR-DFKASEINKKNVTVTWTEPETTEG--LEGYILYK 187
Query: 129 RDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
+ +T++ + L Y F + A NG E + A+
Sbjct: 188 DGKKV-----AEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
Score = 64.2 bits (155), Expect = 1e-11
Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 23/217 (10%)
Query: 80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC- 138
+ I L D + + + D G+ V +E + +
Sbjct: 31 EVGVGIDELVNAEAFAYDFT-LNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLT 89
Query: 139 -----ISTTCHDTTFIVQGLTEGQEYLFHVMAV-----NENGMGPPLEGINPIKAKSPYD 188
+ TEG +V + + + +N I+ SP
Sbjct: 90 GEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEI 149
Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
+P +++ V ++W +P G ++GY + K ++V +
Sbjct: 150 VVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYKD------GKKVAEIGKDETS 201
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
L Y F++ A+ G S+ S+ ++
Sbjct: 202 YTFKKLNRHTIYNFKIAAKYSNG---EVSSKESLTLR 235
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 72.5 bits (177), Expect = 7e-14
Identities = 28/181 (15%), Positives = 48/181 (26%), Gaps = 15/181 (8%)
Query: 91 PPIGPLDVSEITK--HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICI-----STTC 143
P D+ + W P L + + + C+
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGI-GVLLDTNYNLFYWYEGLDHALQCVDYIKADGQN 194
Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGG 203
F ++ +++ V +EN ++ KP PP T+
Sbjct: 195 IGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQN---IVKPLPPVYLTFTRESS 251
Query: 204 DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFR 263
+ L W PL +R Y I+ E + + E RQ F
Sbjct: 252 CEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVEN----ETYTLKTTNETRQLCFV 307
Query: 264 V 264
V
Sbjct: 308 V 308
Score = 59.8 bits (144), Expect = 8e-10
Identities = 37/241 (15%), Positives = 68/241 (28%), Gaps = 18/241 (7%)
Query: 66 YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK--VTH 123
YT +S + G T + + PP V L W PP K
Sbjct: 12 YTFLISTTFGC---TSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVE 68
Query: 124 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA 183
Y ++ R+I W I T + L +G E H + + G ++
Sbjct: 69 YELKYRNIGSETWKTIITK-NLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETT 127
Query: 184 KSPYDKPSPPGIPVVTQ---VGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
+ P ++ SW + Y + G D +
Sbjct: 128 YWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLD--TNYNLFYWYEGLDHALQCV 185
Query: 241 VAICAPS-----QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI 295
I A + + + + V +E S+ + Q+++ + P
Sbjct: 186 DYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPI--RSSYFTFQLQNIVKPLPPVY 243
Query: 296 I 296
+
Sbjct: 244 L 244
Score = 56.7 bits (136), Expect = 8e-09
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 460 RVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNY 516
V ++ ++Q +P PP + T + L W P+ + +Y
Sbjct: 213 CVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDY 272
Query: 517 IVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRV-YAENVYGRSD 564
+E RE + T + + Q F V N+Y D
Sbjct: 273 EIEIREDDTTLVTATVEN--ETYTLKTTNETRQLCFVVRSKVNIYCSDD 319
Score = 46.3 bits (109), Expect = 2e-05
Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 6/130 (4%)
Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDS-LALVWRAP-IWDGGSNIT-N 515
Y + G S+ + +PPQ + D G+ L L W+ P D T
Sbjct: 12 YTFLISTTFGCTSSSDTEI---KVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVE 68
Query: 516 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTY 575
Y ++ R +W + L+ G + +S TTY
Sbjct: 69 YELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTY 128
Query: 576 GELLSGMEAP 585
G+
Sbjct: 129 WISPQGIPET 138
Score = 45.9 bits (108), Expect = 3e-05
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 67 TVNLSNSSGSV-SGTFTINITGL--PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
VN S+ + + S FT + + P PP+ L + + L W+ P +
Sbjct: 213 CVNGSSENKPIRSSYFTFQLQNIVKPLPPVY-LTFTRESSCEIKLKWSIPLGPIPARCFD 271
Query: 124 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV 163
Y +E R+ + T + T+ ++ E ++ F V
Sbjct: 272 YEIEIREDDTTLV---TATVENETYTLKTTNETRQLCFVV 308
Score = 29.8 bits (66), Expect = 3.1
Identities = 11/102 (10%), Positives = 19/102 (18%), Gaps = 9/102 (8%)
Query: 475 KIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--- 531
Q L W+ G TNY + + ++
Sbjct: 130 ISPQGIPETXVQDMDCVYYNWQYLLCSWKPG--IGVLLDTNYNLFYWYEGLDHALQCVDY 187
Query: 532 ----GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
G S + V + S +
Sbjct: 188 IKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFT 229
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 69.8 bits (170), Expect = 9e-14
Identities = 27/200 (13%), Positives = 43/200 (21%), Gaps = 20/200 (10%)
Query: 85 ITGLPGPPIGPLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CI 139
P V + L W P + G + Y V+ + W C
Sbjct: 2 TQSTHESLK-PQRVQFQSRNFHNILQWQPGRALTGN-SSVYFVQYKIYGQRQWKNKEDCW 59
Query: 140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT 199
T + + Y V A + K PP + +
Sbjct: 60 GTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWET--KIDPPVMNITQ 117
Query: 200 QVGGDFVNLSW---------DKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
G V L +K + Y + + Q+V +
Sbjct: 118 VNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAH--RAVE 175
Query: 251 IPNLIEGRQYEFRVYAQNEA 270
I L Y
Sbjct: 176 IEALTPHSSYCVVAEIYQPM 195
Score = 48.2 bits (114), Expect = 2e-06
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 7/100 (7%)
Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTRFT 537
PQ + ++ L W P N + Y V+ + + W T+
Sbjct: 7 ESLKPQRVQFQSRNFHNI-LQW-QPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQEL 64
Query: 538 TMAIT--GLSPGHQYEFRVYAENVYGRSDPSTTSDLITTY 575
+ +T Y RV A + S+ S T +
Sbjct: 65 SCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWW 104
Score = 39.0 bits (90), Expect = 0.002
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%)
Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDI--GHDSLALVWRAP----IWDGGSNI 513
RV A + + + + + P V +I + SL ++ AP + N+
Sbjct: 82 RVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNV 141
Query: 514 T-------NYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
+ Y V + + +V + I L+P Y S
Sbjct: 142 SIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQ-PMLDRRS 200
Query: 567 TTSDLI 572
S+
Sbjct: 201 QRSEER 206
Score = 35.1 bits (80), Expect = 0.035
Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 15/113 (13%)
Query: 72 NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH-------- 123
S S++ FT PP+ + + + + P +
Sbjct: 91 YSEWSMTPRFTPWWETKIDPPVMNITQVN---GSLLVILHAPNLPYRYQKEKNVSIEDYY 147
Query: 124 ---YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP 173
Y V + S+ + H ++ LT Y
Sbjct: 148 ELLYRVFIINNSLEKEQKVYEGAH-RAVEIEALTPHSSYCVVAEIYQPMLDRR 199
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 66.7 bits (163), Expect = 1e-13
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 4/110 (3%)
Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
G P ++ D P P G +++ + +SW +P + G + GY I
Sbjct: 1 GSSGSSG---PQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWE 56
Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
E + + + + L Y V A G S+++
Sbjct: 57 EYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 62.5 bits (152), Expect = 4e-12
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Query: 468 GMDSAIVKIQ-ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
S ++ D P P + +I SL + W+ P G +T Y + E+ +
Sbjct: 3 SGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRT 61
Query: 527 SW--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYG---RSDPSTTSD 570
+ +TGL+ Y V A G S + +S
Sbjct: 62 NTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSG 110
Score = 60.9 bits (148), Expect = 1e-11
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
+PGP G L SEI + + W P G +T Y + + + + + T
Sbjct: 16 DVPGPV-GHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVT 73
Query: 147 T-FIVQGLTEGQEYLFHVMAVNENGMGPP 174
+ V GLT Y V A+ G G
Sbjct: 74 LEYRVTGLTALTTYTIEVAAMTSKGQGQV 102
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 66.0 bits (161), Expect = 1e-13
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 6/102 (5%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCH 144
+ P PP L ++ +T T L W P THY+V S
Sbjct: 5 SSGPLPPPRALTLAAVTPRTVHLTWQPSA-----GATHYLVRCSPASPKGEEEEREVQVG 59
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
++ GL G++Y V ++ P
Sbjct: 60 RPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGP 101
Score = 65.6 bits (160), Expect = 2e-13
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR-----VGNTRF 536
PP+ T+ + ++ L W+ + T+Y+V VG
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEV 63
Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+ GL PG YE V + S+
Sbjct: 64 L---LDGLEPGRDYEVSVQSLRGPEGSEARGIR 93
Score = 57.5 bits (139), Expect = 1e-10
Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 5/98 (5%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
PP + V V+L+W + Y + + ++
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEV 63
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
+ L GR YE V + S P
Sbjct: 64 LLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGP 101
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 66.4 bits (162), Expect = 1e-13
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN---YIVEKREHPMSSW-IRVGNTRFT 537
PP + HD++ + W + Y V R +S + +T
Sbjct: 19 MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSL 78
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
+ TGL P YEF V S S T+ T
Sbjct: 79 SYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATT 114
Score = 56.4 bits (136), Expect = 5e-10
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 4/106 (3%)
Query: 72 NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT---HYVVER 128
+S S T +++ PP+G + +T + W K + Y V
Sbjct: 2 SSGSSGFPTSVPDLSTPMLPPVG-VQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Query: 129 RDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
R S ++ GL Y F VM
Sbjct: 61 RTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTW 106
Score = 54.5 bits (131), Expect = 3e-09
Identities = 17/109 (15%), Positives = 24/109 (22%), Gaps = 4/109 (3%)
Query: 172 GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSR---IQGYWIDK 228
G P PP + D V +SW + ++ Y +
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Query: 229 HEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
S + L YEF V S S
Sbjct: 61 RTSFSA-SAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSM 108
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 65.9 bits (161), Expect = 2e-13
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 183 AKSPYDKPSPPGIPVVTQVGGD--FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
S P P ++ + W P+ G I+ Y ++ GS W
Sbjct: 1 GSSGSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQR 59
Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
A + I NL+ Y RV A G+ S + +
Sbjct: 60 AA---SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKS 96
Score = 64.8 bits (158), Expect = 4e-13
Identities = 24/100 (24%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 479 SDRPDPPQFPTV--EDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRF 536
S PD P+ + + W PI G I YIVE W
Sbjct: 5 SSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQ-RAAS 62
Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
I L Y RV A G + S + + T G
Sbjct: 63 NFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102
Score = 62.1 bits (151), Expect = 4e-12
Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 9/108 (8%)
Query: 87 GLPGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
P P L + + HW PP + G + Y+VE W
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQRAA--S 62
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
++ L Y V AV G+G + + K S P
Sbjct: 63 NFTEIKNLLVNTLYTVRVAAVTSRGIGNW---SDSKSITTI--KGSGP 105
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 66.3 bits (162), Expect = 2e-13
Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 7/128 (5%)
Query: 167 NENGMGPPLEGINPIKAKSPYDKPSPPGIP--VVTQVGGDFVNLSWDKPLDDGGSRIQGY 224
+ GP + ++ +S D+ P +P + + + +SW P + ++GY
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNI-VVRGY 60
Query: 225 WIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI 284
I A I NL Y + A N G +P S +
Sbjct: 61 AIGYGIGSPHAQTIKVDY--KQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRP 118
Query: 285 KD--PMAA 290
P +
Sbjct: 119 HTSGPSSG 126
Score = 60.5 bits (147), Expect = 2e-11
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 2/93 (2%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
P+ P V + S+ + W P + + Y + + + + I
Sbjct: 28 PEVPSSLHVRPLV-TSIVVSWTPPE-NQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTI 85
Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
L P Y + A N G P S +
Sbjct: 86 ENLDPSSHYVITLKAFNNVGEGIPLYESAVTRP 118
Score = 59.4 bits (144), Expect = 6e-11
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 6/103 (5%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
P P + + W PP+ V Y + PH I +
Sbjct: 28 PEVPSSL--HVRPLVTSIVVSWTPPENQNI-VVRGYAIGYGI-GSPHAQTIKVDYKQRYY 83
Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
++ L Y+ + A N G G PL + PS
Sbjct: 84 TIENLDPSSHYVITLKAFNNVGEGIPLY--ESAVTRPHTSGPS 124
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 65.2 bits (159), Expect = 2e-13
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
P A+ + V + + Q +C + +I+WL+ ++ S R I E
Sbjct: 4 PEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGE-- 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+ + D+ Y C + G +T + +
Sbjct: 61 --EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 60.2 bits (146), Expect = 1e-11
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 384 TAPKFNVPPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS 440
T P+ P ++ G+ + ++ I W RD + +
Sbjct: 2 TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE 60
Query: 441 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
+ +RD+ D+ Y V + G D+ + +S
Sbjct: 61 ----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
Score = 49.4 bits (118), Expect = 8e-08
Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
D ++ ++G + +R + + + + + ++ D+G Y S+ SGS +
Sbjct: 33 LRDDVQSINWLRDGVQLVESNRTR--ITGEEVEV--RDSIPADSGLYACVTSSPSGSDTT 88
Query: 80 TFTINIT 86
F++N++
Sbjct: 89 YFSVNVS 95
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 65.2 bits (159), Expect = 3e-13
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTT 538
P V SL + W AP S++ Y + E +S V + +T
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAP--MSSSSVYYYRITYGETGGNSPVQEFTVPYSS-ST 61
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTY 575
I+GLSPG Y VYA S + Y
Sbjct: 62 ATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINY 98
Score = 60.6 bits (147), Expect = 1e-11
Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
S P V + +SWD P+ + Y I E G ++ + + S
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
I L G Y VYA E S
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMFMYS 92
Score = 58.6 bits (142), Expect = 5e-11
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCH 144
+ + P L+V T + + W+ P V +Y + + + +
Sbjct: 2 SSVSSVPTK-LEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVPYS 58
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLE 176
+T + GL+ G +Y V A E+ G
Sbjct: 59 SSTATISGLSPGVDYTITVYAWGEDSAGYMFM 90
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 65.2 bits (159), Expect = 3e-13
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTT 538
P V D SL + W A N+ Y + E S V +T
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYY-ST 65
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
I+GL PG Y VYA + + + I
Sbjct: 66 ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINY 101
Score = 61.7 bits (150), Expect = 4e-12
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
S P V + +SWD ++ Y I E G D+ + S
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTA 66
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
I L G Y VYA + ++ S+ +
Sbjct: 67 TISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 57.5 bits (139), Expect = 1e-10
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
+ + P L+V + T + + W+ V +Y + + + T
Sbjct: 5 SSVSSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGY 62
Query: 146 -TTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
+T + GL G +Y V A + G
Sbjct: 63 YSTATISGLKPGVDYTITVYAYDTFFPGYE 92
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 65.3 bits (159), Expect = 4e-13
Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTR 535
D P V SL + W AP + Y + E +S V ++
Sbjct: 26 GSVSDVPTKLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSK 81
Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
+T I+GL PG Y VYA + I
Sbjct: 82 -STATISGLKPGVDYTITVYAVTGLRLMLAGSKPISIN 118
Score = 64.5 bits (157), Expect = 7e-13
Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 11/127 (8%)
Query: 157 QEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDD 216
+ H ++ P V + +SWD P
Sbjct: 3 HHHHHHSSDYKDDDDKGEN-------LYFQGSVSDVPTKLEVVAATPTSLLISWDAP--- 52
Query: 217 GGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
++ Y I E G ++ + + S I L G Y VYA L L
Sbjct: 53 -AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
Query: 277 SASNSVQ 283
S S+
Sbjct: 112 SKPISIN 118
Score = 57.6 bits (139), Expect = 2e-10
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 78 SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI 137
G + P L+V T + + W+ P + V +Y + + +
Sbjct: 18 KGENLYFQGSVSDVPTK-LEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPV 72
Query: 138 -CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
+ +T + GL G +Y V AV +
Sbjct: 73 QEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLA 110
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 70.4 bits (171), Expect = 4e-13
Identities = 39/226 (17%), Positives = 66/226 (29%), Gaps = 19/226 (8%)
Query: 72 NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH---YVVER 128
G S I T P + L W+ + +V ++
Sbjct: 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRN 247
Query: 129 RDISMPHWICISTTCHDTT---FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKS 185
+ W I + T Q + + YL V A + N E I
Sbjct: 248 PGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQ 307
Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ-----GYWIDKHEVGSDAWQRVN 240
PP + + D ++ P G + + Y I E S+A +++
Sbjct: 308 A--FLLPPVFNI--RSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKII 363
Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA-SNSVQIK 285
+ + +PNL Y + A SS S++V K
Sbjct: 364 E---KKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEK 406
Score = 65.4 bits (158), Expect = 2e-11
Identities = 45/386 (11%), Positives = 103/386 (26%), Gaps = 33/386 (8%)
Query: 208 LSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ---INIPNLIEGRQYEFRV 264
L W++ + G+ + D + G D W +++ S + L + + R+
Sbjct: 25 LRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRI 82
Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPT 323
A+ E S +S PE+ + + + + + + ++ +
Sbjct: 83 RAEKE-NTSSWYE-VDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 140
Query: 324 ISWLKGSREITPSARHHIFAEGDTYT---LIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
++ + + I + L + Y + + + G
Sbjct: 141 FTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIK 200
Query: 381 IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS 440
+ PP V+ ++ W G H +
Sbjct: 201 TTVENEL---PPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQ 257
Query: 441 ERHAILTIRDASNV-----DTAPY--RVVAENDLGM-DSAIVKIQISDRPDPPQFPTVED 492
Y RV A + + ++ P
Sbjct: 258 IPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNI 317
Query: 493 IGH-DSLALVWRAPIWDGGSNITN-----YIVEKREHPMSSWIRVGNTRFTTMAITGLSP 546
DS + AP G + + Y + E+ ++ ++ + T + + L P
Sbjct: 318 RSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKK-TDVTVPNLKP 376
Query: 547 GHQYEFRVYAENVYGR----SDPSTT 568
Y + A + + S S
Sbjct: 377 LTVYCVKARAHTMDEKLNKSSVFSDA 402
Score = 64.6 bits (156), Expect = 3e-11
Identities = 31/204 (15%), Positives = 51/204 (25%), Gaps = 10/204 (4%)
Query: 95 PLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CISTTCHDTTFI 149
P V +I L WN G + + + M +WI C + T F
Sbjct: 11 PQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 68
Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLS 209
L +E + A EN K+ P + +
Sbjct: 69 SLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGT 128
Query: 210 WDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNE 269
D + Y + + S +R+ S+ I L Y +V A
Sbjct: 129 KDSVMWALDGLSFTYSLVIWKNSSGVEERIEN---IYSRHKIYKLSPETTYCLKVKAALL 185
Query: 270 AGLSLPSSASNSVQIKDPMAAKAP 293
+ + P
Sbjct: 186 TSWKIGVYSPVHCIKTTVENELPP 209
Score = 61.9 bits (149), Expect = 2e-10
Identities = 31/212 (14%), Positives = 59/212 (27%), Gaps = 10/212 (4%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHW--NPPKYDGGLKVTHYVVERRD 130
SS +FT GPP L+ + + + Y +
Sbjct: 90 SSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWK 149
Query: 131 ISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKP 190
S I + + L+ Y V A + + ++
Sbjct: 150 NSSGVEERIENIY--SRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENEL 207
Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ---GYWIDKHEVGSDAWQRVNVA--ICA 245
PP V+ ++V L WD + ++Q + W+++ +
Sbjct: 208 PPPENIEVSVQNQNYV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKT 266
Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
+ N+ + Y RV A + S S
Sbjct: 267 TQCVFPQNVFQKGIYLLRVQASDGNNTSFWSE 298
Score = 48.9 bits (115), Expect = 3e-06
Identities = 30/266 (11%), Positives = 66/266 (24%), Gaps = 22/266 (8%)
Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR--AVNKGGVKSTKAELII 382
I S +I + ++ + +VY E R A + + +
Sbjct: 44 QKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYE----EIKLRIRAEKENTSSWYEVDSFT 99
Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK---PKITWYRDNEVIESGGHFHVET 439
PP A DK + + +++ + ++
Sbjct: 100 PFRKAQIGPPEVHLEA-EDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI 158
Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLG-----MDSAIVKIQISDRPDPPQFPTVEDIG 494
++ I S T +V A + PP +
Sbjct: 159 ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ 218
Query: 495 HDSLALVWRAPIWDGGSNIT---NYIVEKREHPMSSWIRVGNTRFTT----MAITGLSPG 547
+ + L W + + ++ + + W ++ + + +
Sbjct: 219 NQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQK 278
Query: 548 HQYEFRVYAENVYGRSDPSTTSDLIT 573
Y RV A + S S T
Sbjct: 279 GIYLLRVQASDGNNTSFWSEEIKFDT 304
Score = 36.1 bits (82), Expect = 0.030
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 10/119 (8%)
Query: 64 GDYTVNLSNSSGSVSGTFTINITGLP--GPPIGPLDVS-EITKHTCTLHWNPPKYDGGLK 120
G Y + + S G+ + ++ I + P + + ++ PK G
Sbjct: 279 GIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTP 338
Query: 121 VT-----HYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
V Y + + + I T V L Y A +
Sbjct: 339 VIQDYPLIYEIIFWENTSNAERKIIEK--KTDVTVPNLKPLTVYCVKARAHTMDEKLNK 395
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 64.8 bits (158), Expect = 6e-13
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 6/106 (5%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
+ +P P + + W PP V Y++ P+ +
Sbjct: 15 SQVPDQPSSL--HVRPQTNCIIMSWTPPLNPNI-VVRGYIIGYGV-GSPYAETVRVDSKQ 70
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
+ ++ L Y+ + A N G G PL +S PS
Sbjct: 71 RYYSIERLESSSHYVISLKAFNNAGEGVPLY--ESATTRSITSGPS 114
Score = 64.4 bits (157), Expect = 8e-13
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 2/96 (2%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTT 538
S PD P V + + + W P+ + + YI+ + +++
Sbjct: 15 SQVPDQPSSLHVRP-QTNCIIMSWTPPL-NPNIVVRGYIIGYGVGSPYAETVRVDSKQRY 72
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+I L Y + A N G P S +
Sbjct: 73 YSIERLESSSHYVISLKAFNNAGEGVPLYESATTRS 108
Score = 61.7 bits (150), Expect = 6e-12
Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 7/110 (6%)
Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
G P P P V + + +SW PL+ ++GY I +
Sbjct: 1 GSSGSSG---PENDLDESQVPDQPSSLHVR-PQTNCIIMSWTPPLNPNI-VVRGYII-GY 54
Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
VGS + V V +I L Y + A N AG +P S
Sbjct: 55 GVGSPYAETVRVDS-KQRYYSIERLESSSHYVISLKAFNNAGEGVPLYES 103
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 68.8 bits (167), Expect = 7e-13
Identities = 27/220 (12%), Positives = 63/220 (28%), Gaps = 24/220 (10%)
Query: 66 YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYV 125
+ N S + G P + L W P + + + +
Sbjct: 74 CSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGR-NTSPDTNYTL 132
Query: 126 VERRDISMPHWICISTTCHDTT----FIVQGLTEG--QEYLFHVMAVNENGMGPPLEGIN 179
C + F + + + +++ +M + G P I
Sbjct: 133 YYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIV 192
Query: 180 PIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
P+ + KP PP I ++ D + + W+ P + + Y ++ + ++
Sbjct: 193 PL---TSRVKPDPPHIKNLSFHNDD-LYVQWENPQNFISRCLF-YEVEVNNSQTETHNVF 247
Query: 240 NV------------AICAPSQINIPNLIEGRQYEFRVYAQ 267
V + S +P ++ R+ +
Sbjct: 248 YVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVK 287
Score = 60.7 bits (146), Expect = 3e-10
Identities = 28/220 (12%), Positives = 50/220 (22%), Gaps = 12/220 (5%)
Query: 91 PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIV 150
PP+ L VS T WNPP+ Y D I
Sbjct: 5 PPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKK-----IAPETRRSIE 59
Query: 151 QGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSW 210
L E N P + + D S ++ SW
Sbjct: 60 VPLNERICLQVGSQCST-NESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSW 118
Query: 211 DKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS----QINIPNLIEGRQYEFRVYA 266
+ S Y + + + ++ + + + V
Sbjct: 119 LPGRN--TSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQI 176
Query: 267 QNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 306
+ + N V + + P I + + +
Sbjct: 177 MVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLY 216
Score = 48.7 bits (115), Expect = 3e-06
Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 18/142 (12%)
Query: 446 LTIRDASNVDTAPYRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVW 502
LT S+ + +++ +++ G IV + +PDPP + +D L + W
Sbjct: 161 LTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQW 219
Query: 503 RAP-------------IWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQ 549
P + + + N + + + + G+ P
Sbjct: 220 ENPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTL 279
Query: 550 YEFRVYA-ENVYGRSDPSTTSD 570
R+ N D S+
Sbjct: 280 NTVRIRVKTNKLCYEDDKLWSN 301
Score = 46.4 bits (109), Expect = 1e-05
Identities = 8/91 (8%), Positives = 16/91 (17%), Gaps = 4/91 (4%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITG 543
P +V ++ W P N + H +
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPPEGASS----NCSLWYFSHFGDKQDKKIAPETRRSIEVP 61
Query: 544 LSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
L+ + I+
Sbjct: 62 LNERICLQVGSQCSTNESEKPSILVEKCISP 92
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 66.9 bits (163), Expect = 8e-13
Identities = 32/229 (13%), Positives = 61/229 (26%), Gaps = 48/229 (20%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKP-----TISWLKGSREI--------------- 333
+ VP N +C + + W + I
Sbjct: 3 TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62
Query: 334 TPSARHHIFAEGDTY---TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNV 390
+ R + + + L I V DA Y C ++ GG + + +
Sbjct: 63 SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITVKVNAPYNKIN 121
Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG-----------GHFHVET 439
+ GYPK ++ W + + SG F+V +
Sbjct: 122 QRILVVD---PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTS 178
Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP--DPPQ 486
+ L I +N + ++ ++ I + P PP
Sbjct: 179 T-----LRINTTTNEI---FYCTFRRLDPEENHTAELVIPELPLAHPPN 219
Score = 53.5 bits (128), Expect = 3e-08
Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 3/105 (2%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
I + C G PK + W ++ ++ +
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
Query: 351 IINSVYGV---DADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
+ S + + + C ++ AEL+I P + P
Sbjct: 175 NVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPN 219
Score = 31.9 bits (72), Expect = 0.42
Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 3/67 (4%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDD---YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
EV T + V S + + + I + + T
Sbjct: 147 EVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAE 206
Query: 83 INITGLP 89
+ I LP
Sbjct: 207 LVIPELP 213
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 63.5 bits (154), Expect = 1e-12
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 12/99 (12%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCP---KPTISWLKG---------SREITPSARHHIFA 343
++ ++ + F + G P + W KG + + + +
Sbjct: 8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67
Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
+ + L I Y C K + L +
Sbjct: 68 KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 52.3 bits (125), Expect = 1e-08
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 403 GENVVVKIPFTGYP---KPKITWYRDNEV---IESGGHFHVETSERHAI------LTIRD 450
G ++ G P + W++ V + G H + S A L I D
Sbjct: 19 GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78
Query: 451 ASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
A T YR D + + + +
Sbjct: 79 AQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 41.5 bits (97), Expect = 6e-05
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 12/97 (12%)
Query: 2 PNALYIPEGDNTKVKIFYAGD---QPMEVS---------LTKNGRVVQSDDRFKFTVLDD 49
P + G + AG +P V +K G+ +Q D +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 50 YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86
+ I + + G Y +S F + +
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 62.5 bits (152), Expect = 2e-12
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 289 AAKAPEIIV-PLRNANAIQNHNAQFQCT-ITGCPKPTISWLKGSREITPSARHHIFAEGD 346
+K + V R+ + + F CT + P T+ W + PS + G
Sbjct: 6 PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--RAMDFNG- 62
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
L I +V DA YVC N + A L +
Sbjct: 63 --ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 54.0 bits (130), Expect = 2e-09
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 378 AELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFH 436
A L + P R + G +V + P + W R + G
Sbjct: 1 APLAAPSKPIMVTVEEQRSQS-VRPGADVTFICTAKSKSPAYTLVWTRLH-----NGKLP 54
Query: 437 VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
+ + ILTIR+ D Y N MD + +
Sbjct: 55 SRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 32.1 bits (73), Expect = 0.10
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 54 FIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
I+ ++ DAG Y SN GT T+++
Sbjct: 65 TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 62.8 bits (153), Expect = 2e-12
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV---EKREHPMSSWIRVGNTRF 536
P E G S++L+W+ P G I Y + EK + S T
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTR 67
Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
T ++GL PG +Y F+V A G S ++ T
Sbjct: 68 AT--VSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETG 103
Score = 61.2 bits (149), Expect = 8e-12
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
S PS + + G V+L W +P G I Y I +E + +
Sbjct: 4 GSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLK 62
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
+ L G +Y F+V A+ AG S A
Sbjct: 63 AVTTR-ATVSGLKPGTRYVFQVRARTSAGCGRFSQA 97
Score = 61.2 bits (149), Expect = 8e-12
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 8/112 (7%)
Query: 84 NITGLPGPPIGPLDVS--EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST 141
+ + P + + + + +L W P+ G+ + Y ++ + +
Sbjct: 3 SGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGI-ILEYEIKYYEKDKEMQSYSTL 61
Query: 142 TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
T V GL G Y+F V A G G + ++ ++ KPS P
Sbjct: 62 KAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQ---AMEVETG--KPSGP 108
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 62.1 bits (151), Expect = 4e-12
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI-RVGNTRFT 537
S P S+ L W P G I +Y + E + + + ++
Sbjct: 5 SSGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTN 63
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
T I GL PG Y +V A V G S T
Sbjct: 64 TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTL 100
Score = 59.0 bits (143), Expect = 4e-11
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
P + T + TL W P+ G+ + Y + + + T
Sbjct: 8 PSTV-PIMHQVSATMRSITLSWPQPEQPNGI-ILDYEIRYYEKEHNEFNSSMARSQTNTA 65
Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
+ GL G Y+ V A G G + ++ D G
Sbjct: 66 RIDGLRPGMVYVVQVRARTVAGYGKF---SGKMCFQTLTDSGPSSG 108
Score = 58.6 bits (142), Expect = 7e-11
Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
S PS I + LSW +P G I Y I +E + +
Sbjct: 1 GSSGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMA- 58
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
+ I L G Y +V A+ AG S + +
Sbjct: 59 RSQTNTARIDGLRPGMVYVVQVRARTVAG---YGKFSGKMCFQ 98
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 61.3 bits (149), Expect = 6e-12
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTT 538
P V SL + W A S+++ Y + E +S V + +T
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQEFTVPGSS-ST 59
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
I+GLSPG Y VYA Y S + I
Sbjct: 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINY 95
Score = 54.3 bits (131), Expect = 2e-09
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
S P V + +SWD S + Y I E G ++ + + S
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQEFTVPGSSSTA 60
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
I L G Y VYA S + +S+ +
Sbjct: 61 TISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 51.6 bits (124), Expect = 1e-08
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCH 144
+ + P L+V T + + W+ V++Y + + + +
Sbjct: 2 SSVSSVPTK-LEVVAATPTSLLISWDAS--SS--SVSYYRITYGETGGNSPVQEFTVPGS 56
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
+T + GL+ G +Y V A
Sbjct: 57 SSTATISGLSPGVDYTITVYAYYSYYDLYY 86
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 63.1 bits (153), Expect = 9e-12
Identities = 22/171 (12%), Positives = 47/171 (27%), Gaps = 30/171 (17%)
Query: 320 PKPTISWLKGSREIT----------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
+ W +GS + S I L I ++ D+ Y +
Sbjct: 26 DIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL---ANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 429
G + L + + P + + N + ++ Y+ E +
Sbjct: 83 TNGTRILNKALDLRILEMVSKPMIYWE------CSNATLTCEVLEGTDVELKLYQGKEHL 136
Query: 430 ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
S T+ AP++ A N + +S + + +
Sbjct: 137 RSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCPE 176
Score = 43.8 bits (103), Expect = 4e-05
Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 22/119 (18%)
Query: 262 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321
+ V + G + ++ ++ P I + NA C +
Sbjct: 76 YNVTVYSTNG---TRILNKALDLRILEMVSKPMIYW--------ECSNATLTCEVLEGTD 124
Query: 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
+ +G + + ++ + + C+AVN+ +S +
Sbjct: 125 VELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172
Score = 40.3 bits (94), Expect = 5e-04
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
V+ K F +L + + IK + ++D+G Y V + +++G+ +++
Sbjct: 38 LVAEFKRKMKPFLKSG-AFEILANGDLK-IKNLTRDDSGTYNVTVYSTNGTRILNKALDL 95
Query: 86 TGLPGPPIGPLDVSEITKH-TCTLHWNPP 113
L + TC +
Sbjct: 96 RILEMVSKPMIYWECSNATLTCEVLEGTD 124
Score = 39.9 bits (93), Expect = 6e-04
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 403 GENVVVKIPF--TGYPKPKITWYRDNEVIES--GGHFHVETSERHAI-----LTIRDASN 453
G + + IP ++ W R + ++ S I L I++ +
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
D+ Y V + G + + +
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDLRILEMVSK 103
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 64.5 bits (156), Expect = 9e-12
Identities = 34/238 (14%), Positives = 53/238 (22%), Gaps = 61/238 (25%)
Query: 295 IIVPLRNANAIQNHNAQFQCTIT---GCPKPTISWLKGSREITPSA-------------- 337
+ + C+ P ISWLKG+ +
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 338 ----------------RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK------GGVKS 375
R + TL + V+ D Y C+ G
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAA-PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 123
Query: 376 TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF 435
+ + P NV + D+G ++ + P T +TWY E+
Sbjct: 124 SVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG 183
Query: 436 HVETSERHAI---------------------LTIRDASNVDTAPYRVVAENDLGMDSA 472
+ L IR A D G A
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDA 241
Score = 61.5 bits (148), Expect = 1e-10
Identities = 19/168 (11%), Positives = 39/168 (23%), Gaps = 22/168 (13%)
Query: 238 RVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK-DPMAAKAPEII 296
R +VA A + + ++ + + + + SV +K +
Sbjct: 81 RASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHV 140
Query: 297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--------------- 341
+ ++ C T C ++W G
Sbjct: 141 STAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFS 200
Query: 342 ------FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
+ L+I + DA C G I+
Sbjct: 201 SEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL 248
Score = 32.6 bits (73), Expect = 0.33
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 36 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
S+ + + ++ I+ + DAG L+ G + + I
Sbjct: 199 FSSEIAGRASFSGARNLV-IRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 29.9 bits (66), Expect = 2.0
Identities = 10/85 (11%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 403 GENVVVK---IPFTGYPKPKITWYRDNEVIES----GGHFHVETSERHAILTIRDASNVD 455
G V + P I+W + S G+++ + + + +
Sbjct: 17 GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFG 76
Query: 456 TAPYRVVAENDLGMDSAIVKIQISD 480
R N + + D
Sbjct: 77 DFLGRASVANLAAPTLRLTHVHPQD 101
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 63.2 bits (153), Expect = 1e-11
Identities = 21/187 (11%), Positives = 54/187 (28%), Gaps = 16/187 (8%)
Query: 105 TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC---ISTTCHDTTFIVQGLTEGQEYLF 161
CT W +T + + + C + + + +Q F
Sbjct: 16 NCT--WQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTF 73
Query: 162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRI 221
V + + + P P + ++ + L+W+ +
Sbjct: 74 VVQLQDPREPRRQATQMLKL---QNLVIPWAPENLTLHKLSESQLELNWNNRF---LNHC 127
Query: 222 QGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLS---LPSSA 278
+ + +W +V + ++P++ ++Y FRV ++ S
Sbjct: 128 LEHLVQYRTDWDHSWTEQSVDY--RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEW 185
Query: 279 SNSVQIK 285
S+ +
Sbjct: 186 SHPIHWG 192
Score = 59.8 bits (144), Expect = 2e-10
Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 6/127 (4%)
Query: 447 TIRDASNVDTAPYRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWR 503
++ + V ++ + ++K+Q P P+ T+ + L L W
Sbjct: 61 QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN 120
Query: 504 APIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRS 563
++ ++V+ R SW ++ + +Y FRV +
Sbjct: 121 NRFL---NHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCG 177
Query: 564 DPSTTSD 570
S+
Sbjct: 178 SAQHWSE 184
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 63.5 bits (154), Expect = 1e-11
Identities = 33/194 (17%), Positives = 54/194 (27%), Gaps = 17/194 (8%)
Query: 105 TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT----TFIVQGLTEGQEYL 160
TC W + + + CI ++ + Y
Sbjct: 18 TCE--WKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYT 75
Query: 161 FHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSR 220
+ A + + +K P PG V D + L+W P
Sbjct: 76 LDLWAGQQLLWKGSFKPSEHVK-------PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYL 128
Query: 221 IQG--YWID-KHEVGSDAWQRVNVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
Y ++ E ++ NV PS +I L G Y RV A +A + S
Sbjct: 129 YNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWS 188
Query: 277 SASNSVQIKDPMAA 290
S S + +
Sbjct: 189 EWSPSTKWHNSYRE 202
Score = 46.6 bits (110), Expect = 5e-06
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 66 YTVNL-SNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP---KYDGGLKV 121
YT++L + G+F + P P L V T L W+ P +
Sbjct: 74 YTLDLWAGQQLLWKGSFKPSEHVKPRAPGN-LTVHTNVSDTLLLTWSNPYPPDNYLYNHL 132
Query: 122 THYVVERRDISMPHWICISTTCHDTT--FIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
T+ V + + + T + + L G Y V A + E
Sbjct: 133 TYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSP 192
Query: 180 PIKAKSPYDKP 190
K + Y +P
Sbjct: 193 STKWHNSYREP 203
Score = 43.9 bits (103), Expect = 5e-05
Identities = 28/134 (20%), Positives = 40/134 (29%), Gaps = 7/134 (5%)
Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAP 505
L + D + D + A L K +P P TV D+L L W P
Sbjct: 63 LLMDDVVSADNYTLDLWAGQQLLWKG-SFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNP 121
Query: 506 IWDGGSNITN--YIVEKREHPMSSWIRVGNTRF----TTMAITGLSPGHQYEFRVYAENV 559
+ Y V + R+ N + +A + L G Y RV A
Sbjct: 122 YPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQ 181
Query: 560 YGRSDPSTTSDLIT 573
+ S S
Sbjct: 182 AYNTTWSEWSPSTK 195
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 64.0 bits (155), Expect = 1e-11
Identities = 33/211 (15%), Positives = 54/211 (25%), Gaps = 22/211 (10%)
Query: 91 PPIGPLDVSEITK--HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTT- 147
GP ++ T+ W G+ Y + P +C
Sbjct: 20 AARGPEELLCFTERLEDLVCFWEEAA-SAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARG 78
Query: 148 -------FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQ 200
+ V A + + IN + P V
Sbjct: 79 AVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEV------VLLDAPVGLVARL 132
Query: 201 VG-GDFVNLSWDKPLDDGGSRIQGYWI-DKHEVGSDAWQRVNVAICAPSQINIPNLIEGR 258
V L W P + + Y + G+ + QRV + + NL
Sbjct: 133 ADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTE-CVLSNLRGRT 191
Query: 259 QYEFRVYAQ--NEAGLSLPSSASNSVQIKDP 287
+Y F V A+ + S S V + P
Sbjct: 192 RYTFAVRARMAEPSFGGFWSEWSEPVSLLTP 222
Score = 56.3 bits (135), Expect = 4e-09
Identities = 17/98 (17%), Positives = 26/98 (26%), Gaps = 1/98 (1%)
Query: 67 TVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVV 126
V ++ + IN L P+G + L W PP Y V
Sbjct: 100 RVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEV 159
Query: 127 E-RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV 163
+ + T ++ L Y F V
Sbjct: 160 DVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAV 197
Score = 48.9 bits (116), Expect = 1e-06
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 4/114 (3%)
Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIG-HDSLALVWRAPIWDGGSNITNYIV 518
RV A + ++ I D P + L W P ++ Y V
Sbjct: 100 RVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEV 159
Query: 519 E-KREHPMSSWIRVGNT-RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
+ S RV T ++ L +Y F V A + S S+
Sbjct: 160 DVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA-RMAEPSFGGFWSE 212
Score = 30.8 bits (69), Expect = 1.0
Identities = 15/101 (14%), Positives = 23/101 (22%), Gaps = 10/101 (9%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV--------EKREHPMSSWIRVGN 533
P+ + L W G Y K + G
Sbjct: 21 ARGPEELLCFTERLEDLVCFWEEAA-SAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79
Query: 534 TRFT-TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
RF ++ S E RV A + R + +
Sbjct: 80 VRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVV 120
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 63.0 bits (152), Expect = 1e-11
Identities = 21/176 (11%), Positives = 38/176 (21%), Gaps = 29/176 (16%)
Query: 318 GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV---- 373
I+W K + I + S Y C+
Sbjct: 26 DAEAKNITWFKDGKMIGFLTED-------KKKWNLGSNAKDPRGMYQCKGSQNKSKPLQV 78
Query: 374 --------KSTKAELIIMTAPKFNVPPRFRD-TAYFDKGENVVVKIPFTG---------Y 415
+ K A K + D K+ +G Y
Sbjct: 79 YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY 138
Query: 416 PKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS 471
P +I W +++ I S+ + + + Y D+
Sbjct: 139 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194
Score = 56.1 bits (134), Expect = 3e-09
Identities = 10/105 (9%), Positives = 21/105 (20%), Gaps = 2/105 (1%)
Query: 272 LSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR 331
+ + + + I +I C P I W +
Sbjct: 93 AKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDK 150
Query: 332 EITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST 376
I + + + + YVC +
Sbjct: 151 NIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 195
Score = 43.3 bits (101), Expect = 7e-05
Identities = 11/71 (15%), Positives = 22/71 (30%)
Query: 12 NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS 71
T V + E+ N + + D+ K D+ + + E +G Y
Sbjct: 128 GTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
Query: 72 NSSGSVSGTFT 82
S + +
Sbjct: 188 GSKPEDANFYL 198
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 64.1 bits (155), Expect = 2e-11
Identities = 24/253 (9%), Positives = 51/253 (20%), Gaps = 60/253 (23%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTIT---GCPKPTISWLKGSREITPSARHHIFAEGDTY- 348
P + V + C + + WL + S + +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 349 -------------------TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 389
+L++ V D Y C K K + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW------ 119
Query: 390 VPPRFRDTAYFDKGENVVVKIPFTGYPKP---KITWYRDN-------------------- 426
V P G+ ++ + K+ W +
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179
Query: 427 ----EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
+ + S + ++ D Y + + +
Sbjct: 180 FQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
Query: 483 ----DPPQFPTVE 491
P PT +
Sbjct: 240 FQRTISPTPPTDK 252
Score = 34.1 bits (77), Expect = 0.095
Identities = 8/59 (13%), Positives = 19/59 (32%)
Query: 53 IFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWN 111
I ++ +++ D G YT ++ T +++ L+ N
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGILNGN 261
Score = 33.7 bits (76), Expect = 0.15
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 53 IFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPG-PPIGPLDVSEITKHTCTLHWN 111
+ +++++K D G YT + + S+ + + LP P + V + T+ C++
Sbjct: 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQST 145
Query: 112 PPK 114
K
Sbjct: 146 EEK 148
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 65.5 bits (160), Expect = 2e-11
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA---RHHIFAEGDT 347
+A + + H QF C G P P I WL + + + R +F +G
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-- 441
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
TL + D Y+C A N GG S A L +
Sbjct: 442 -TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 56.3 bits (136), Expect = 2e-08
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI---ESGGHFHVETSER 442
+ + R + D+G V G P P I W + + +S G V
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-- 440
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
L +R A D Y +A N G DS + +
Sbjct: 441 -GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 45.9 bits (109), Expect = 3e-05
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVS-LTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
+++ EG + GD P + L+ +V + + TV D + ++ +
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLE-VRYAQV 450
Query: 61 EDAGDYTVNLSNSSGSVSGTFTINIT 86
+D G Y +N+ G+ S +++
Sbjct: 451 QDNGTYLCIAANAGGNDSMPAHLHVR 476
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 62.8 bits (152), Expect = 2e-11
Identities = 25/174 (14%), Positives = 45/174 (25%), Gaps = 20/174 (11%)
Query: 107 TLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CISTTCHDTTFIVQGLTEGQEYLFH 162
LHW P T Y V + W C T +D T + L Y
Sbjct: 21 ILHWTPIPQQSE--STCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRAR 78
Query: 163 VMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGG---- 218
V AV+ + + + + G + +P
Sbjct: 79 VRAVDGSRHSQWTVTNTRFSVDEV--TLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTY 136
Query: 219 SRIQGYWID-----KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ 267
I ++ + + G + V Q ++ E ++ +V
Sbjct: 137 ESIFSHFREYEIAIRKVPGQFTFTHKKVKHE---QFSLLTSGEVGEFCVQVKPS 187
Score = 40.5 bits (94), Expect = 6e-04
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 500 LVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFT----TMAITGLSPGHQYEFRV 554
L W S T Y V + + SW + ++ T L + Y RV
Sbjct: 22 LHWTPI--PQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARV 79
Query: 555 YAENVYGRSDPSTTSDLIT 573
A + S + T+ +
Sbjct: 80 RAVDGSRHSQWTVTNTRFS 98
Score = 35.1 bits (80), Expect = 0.038
Identities = 13/107 (12%), Positives = 27/107 (25%), Gaps = 18/107 (16%)
Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
+ KIQ+ P T E I + Y + R+ P
Sbjct: 116 GFILGKIQLPRPKMAPAQDTYESIFS----------------HFREYEIAIRKVPGQFTF 159
Query: 530 RVGNTRFTTMAITGLSPGHQYEFRV--YAENVYGRSDPSTTSDLITT 574
+ ++ ++ +V + + S + T
Sbjct: 160 THKKVKHEQFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKEECISLT 206
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 60.1 bits (146), Expect = 3e-11
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 86 TGLPGPPIGPLDVS----EITKHTCTLHWNPPKYDGGLKVTHYVVE-RRDISMPH--WIC 138
+G GP P D++ E + W PP G K+T Y++ D ++P WI
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIM 61
Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
+ + T + L Y F + A N G+GP
Sbjct: 62 ETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPL 97
Score = 58.2 bits (141), Expect = 1e-10
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 482 PDPPQFPTVEDI--GHDSLALVWRAPIWDGGSNITNYIVE---KREHPMSSWIRV---GN 533
P+ TV ++ + W+ P+ G IT YI+ + P+ WI G+
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
I L+ Y FR+ A N G S T
Sbjct: 68 RLTHQ--IMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTL 106
Score = 53.9 bits (130), Expect = 3e-09
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 190 PSPPGIPVVTQVGG--DFVNLSWDKPLDDGGSRIQGYWI---DKHEVGSDAWQRVNVAIC 244
S P V G V +SW PL+ G +I Y + + D W ++
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISG- 66
Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
I +L Y FR+ A+N G S+ + +
Sbjct: 67 DRLTHQIMDLNLDTMYYFRIQARNSKG---VGPLSDPILFR 104
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 59.1 bits (143), Expect = 5e-11
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN---YIVEKREH-PMSSWIRVGNTRFT 537
PP + HD++ + W IT+ Y V + + P ++ + N
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+ +TGL P YEF V S S T+ T
Sbjct: 69 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF 105
Score = 54.1 bits (130), Expect = 2e-09
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 8/114 (7%)
Query: 86 TGLPGPPIGPLDV--SEITKHTCTLHWNPP---KYDGGLKVTHYVVERRDISMPHWICIS 140
+G GP + P+ V S ++ T + W K+ +Y V + + +
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62
Query: 141 TTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
+++V GL Y F VM + G
Sbjct: 63 ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM---TAHGTTFELSGPSSG 113
Score = 48.3 bits (115), Expect = 3e-07
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 5/97 (5%)
Query: 185 SPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDGGSRI---QGYWIDKHEVGSDAWQRVN 240
S P PP + + D + ++W +I + Y + +
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK-YK 61
Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
A + L YEF V S S
Sbjct: 62 NANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM 98
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 64.0 bits (156), Expect = 5e-11
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI----TPSARHHIFAEGDTY 348
P I+ P + N + A+ +C + ++SW+ + + R + ++G
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG--- 397
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
TL +V D Y C N G + A L +
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
Score = 50.5 bits (121), Expect = 9e-07
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
AP PP +G +K + ++W N + + G + V +
Sbjct: 340 YAPVIVEPPA---DLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLS 395
Query: 444 A-ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
L + + DT Y + N +G +A + ++
Sbjct: 396 DGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT--GTHHHHH 439
Score = 49.4 bits (118), Expect = 2e-06
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 20 AGDQPMEVS-LTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77
A VS +T NG V+ + + VL D + + +D G YT +SNS G+
Sbjct: 365 ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN-FTNVTVQDTGMYTCMVSNSVGNT 423
Query: 78 SGTFTINITGLPGPP 92
+ + T+N+TG
Sbjct: 424 TASATLNVTGTHHHH 438
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 61.4 bits (148), Expect = 8e-11
Identities = 33/232 (14%), Positives = 66/232 (28%), Gaps = 16/232 (6%)
Query: 67 TVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVV 126
LS + S+ T G P S + T + HW + G +
Sbjct: 8 AAILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSP-ERETFSCHWTDEVHHGTKNEGPIQL 66
Query: 127 ERRDISMPHWICISTTCHDT--------TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
+ W C D F + Y + +
Sbjct: 67 FYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVD 126
Query: 179 NPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLD---DGGSRIQGYWIDKHEVGSDA 235
++ P +T + D + + W+ P + G + Y + EV
Sbjct: 127 EIVQPDPPIALNWTLLNVSLTGIHAD-IQVRWEAPRNADIQKGWMVLEYELQYKEVNETK 185
Query: 236 WQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
W+ ++ + + + +L ++YE RV ++ S + + P
Sbjct: 186 WKMMDP--ILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVLYVTLP 234
Score = 49.4 bits (117), Expect = 8e-07
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDI------GHDSLALVWRAPIW---DGG 510
++ + D + +PDPP + H + + W AP G
Sbjct: 110 KLTSNGGTV-DEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKG 168
Query: 511 SNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYA 556
+ Y ++ +E + W + T++ + L +YE RV +
Sbjct: 169 WMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRS 214
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 58.0 bits (140), Expect = 1e-10
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTT 538
D P+ V SL + W + + Y + E +S V T
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQEFTVPGPV-HT 58
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
I+GL PG Y VYA + +
Sbjct: 59 ATISGLKPGVDYTITVYAVTDHKPHADGPHT 89
Score = 54.1 bits (130), Expect = 3e-09
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 11/111 (9%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHD 145
G+ P L+V T + + W+ + +Y + + + +
Sbjct: 2 GVSDVPRD-LEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPV 56
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP-----IKAKSPYDKPS 191
T + GL G +Y V AV ++ I ++ DKPS
Sbjct: 57 HTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPS 107
Score = 51.1 bits (122), Expect = 3e-08
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 4/90 (4%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
P V + +SWD Q Y I E G ++ +
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
I L G Y VYA + +
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHT 89
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 62.5 bits (152), Expect = 2e-10
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI----TPSARHHIFAEGDT 347
AP I+ R+ N + A+ +C P ++ WL + + + R + +G
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG-- 407
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
TL + V D Y C N G + A L + TA
Sbjct: 408 -TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
Score = 50.5 bits (121), Expect = 8e-07
Identities = 20/107 (18%), Positives = 30/107 (28%), Gaps = 8/107 (7%)
Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
+AP PR +G +K P + W N + S H S +
Sbjct: 351 SAPFIMDAPR---DLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLN 405
Query: 444 A-ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP--DPPQF 487
L DT Y + N G +A + +S
Sbjct: 406 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHHH 452
Score = 41.7 bits (98), Expect = 6e-04
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVS-LTKNGRVVQSDDRF-KFTVLDDYIIIFIKEIR 59
P L I EG ++K V L NG V+ R + +VL+D + +
Sbjct: 359 PRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL-NFSHVL 415
Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
D G YT ++N +G+ + + +N++
Sbjct: 416 LSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 60.1 bits (145), Expect = 2e-10
Identities = 26/173 (15%), Positives = 47/173 (27%), Gaps = 21/173 (12%)
Query: 107 TLHWNPPKYDGGLKVTHYVVE-----RRDISMPHWICISTTCHDTTF----IVQGLTEGQ 157
L W+P G +Y VE + WI S C T + +T
Sbjct: 23 LLMWSPVIAPGE--TVYYSVEYQGEYESLYTSHIWIPSSW-CSLTEGPECDVTDDITATV 79
Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
Y V A + +P + PG+ + + L P
Sbjct: 80 PYNLRVRATLGSQTSAWSILKHPFN--RQSTILTRPGMEITKDGFHLVIELEDLGP---- 133
Query: 218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEA 270
+ + A + V + +++ + G Y + +A
Sbjct: 134 ---QFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKA 183
Score = 40.8 bits (95), Expect = 4e-04
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 4/124 (3%)
Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE 519
RV A + + +R +I D LV G
Sbjct: 84 RVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHLVIELE-DLGPQFEFLVAYW 142
Query: 520 KREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDL--ITTYGE 577
+RE +++ + + + + PG Y + V S S + GE
Sbjct: 143 RREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTF-VKAIGRYSAFSQTECVEVQGE 201
Query: 578 LLSG 581
+ G
Sbjct: 202 AIEG 205
Score = 40.1 bits (93), Expect = 7e-04
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 12/99 (12%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE-----KREHPMSSWIRVG---NTR 535
PQ +V + L+W Y VE + + WI T
Sbjct: 9 APQQLSVLST-NMKHLLMWSPV--IAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTE 65
Query: 536 FTTMAIT-GLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
+T ++ Y RV A S S
Sbjct: 66 GPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFN 104
Score = 28.5 bits (63), Expect = 4.8
Identities = 11/83 (13%), Positives = 19/83 (22%), Gaps = 17/83 (20%)
Query: 208 LSWDKPLDDGGS---RIQGYWIDKHEVGSDAWQRVNVAICAPSQINI--------PNLIE 256
L W + G + ++ + S W ++
Sbjct: 24 LMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPS------SWCSLTEGPECDVTDDITA 77
Query: 257 GRQYEFRVYAQNEAGLSLPSSAS 279
Y RV A + S S
Sbjct: 78 TVPYNLRVRATLGSQTSAWSILK 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 61.8 bits (150), Expect = 2e-10
Identities = 11/101 (10%), Positives = 24/101 (23%), Gaps = 1/101 (0%)
Query: 298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYG 357
A +C + + ++ + + + L V
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310
Query: 358 VDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTA 398
D Y C A+ + ++ EL + A
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAA 351
Score = 58.3 bits (141), Expect = 2e-09
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 388 FNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILT 447
FN G+ + ++ K+ NE + S G + S R+ L
Sbjct: 246 FNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGS-NGSVSVRNGDLF 304
Query: 448 IRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
+ D Y A + ++ V++++ + T+
Sbjct: 305 FKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLN 348
Score = 46.0 bits (109), Expect = 2e-05
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 7/115 (6%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
+A GD ++ +V ++ + V S + + + F K+++ E
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDL-FFKKVQVE 311
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYD 116
D G YT + + + + + + T + W+ P+++
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVYNFTLHG------HHDTLNAAADPWSHPQFE 360
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 56.9 bits (137), Expect = 3e-10
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 14/98 (14%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRF----- 536
+V D+ SL L W AP ++++ S+
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPPGA----FDSFLLRFGVPSPSTLEPHPRPLLQRELM 64
Query: 537 -----TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
+ + L G Y +Y ++D +
Sbjct: 65 VPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 102
Score = 56.1 bits (135), Expect = 5e-10
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCH- 144
+ P + L V+++T + L+W P + + V PH +
Sbjct: 5 SSGSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELM 64
Query: 145 ----DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
+ +++ L G Y + + ++G
Sbjct: 65 VPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 102
Score = 44.6 bits (105), Expect = 5e-06
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 4/94 (4%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDK----HEVGSDAWQRVNVAICA 245
VT V + L+W+ P S + + + QR +
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68
Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ +L G Y +Y + +
Sbjct: 69 RHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 102
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 56.7 bits (136), Expect = 4e-10
Identities = 15/108 (13%), Positives = 23/108 (21%), Gaps = 10/108 (9%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISW----------LKGSREITPSARHHIFAEG 345
+ P CT I + K + +
Sbjct: 12 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71
Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
TL I+ V D Y C A + K + + P
Sbjct: 72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSG 119
Score = 46.7 bits (110), Expect = 1e-06
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNE----------VIESGGHFHVETSERHAILTIRDA 451
GE +V+ I + + + E + + LTI
Sbjct: 22 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 81
Query: 452 SNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
+ D Y A + L +++ ++P
Sbjct: 82 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 35.1 bits (80), Expect = 0.016
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 4/71 (5%)
Query: 19 YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
Y + L QS + + I + + D G YT S+ +
Sbjct: 46 YPSSKHQHKKLVNRDLKTQSGSE----MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 101
Query: 79 GTFTINITGLP 89
+ + + P
Sbjct: 102 NSTFVRVHEKP 112
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 56.6 bits (137), Expect = 4e-10
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 9/118 (7%)
Query: 163 VMAVNENGMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDG--GS 219
+ N G G + I + D PS PP + V + +SW P G
Sbjct: 4 GSSGNRYGPGVSTD---DITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG- 59
Query: 220 RIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
I GY I +H + + + + L +G QY F+V A G PS+
Sbjct: 60 FITGYKI-RHRKTTRRGEMETLEPNNLWYL-FTGLEKGSQYSFQVSAMTVNGTGPPSN 115
Score = 49.6 bits (119), Expect = 1e-07
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Query: 461 VVAENDLGM--DSAIVKIQ-ISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSN--IT 514
+ N G + + + +SD P PPQ ++E + S+ + W P N IT
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGT-QNGFIT 62
Query: 515 NYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
Y + R+ + TGL G QY F+V A V G PS T
Sbjct: 63 GYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET 121
Score = 46.2 bits (110), Expect = 2e-06
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 67 TVNLSNSSGSVSGTFTINITGLPGPPIGP---LDVSEITKHTCTLHWNPPKYDG--GLKV 121
+ + N G T I + L P P + + + + + W PP G +
Sbjct: 3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG-FI 61
Query: 122 THYVVE-RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
T Y + R+ + + ++ GL +G +Y F V A+ NG GPP
Sbjct: 62 TGYKIRHRKTTRRGEMETLEPN--NLWYLFTGLEKGSQYSFQVSAMTVNGTGPP 113
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 59.0 bits (142), Expect = 4e-10
Identities = 30/203 (14%), Positives = 51/203 (25%), Gaps = 21/203 (10%)
Query: 105 TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC---------ISTTCHDTTFIVQGLTE 155
+C W+ + V D C + Q LT
Sbjct: 19 SCV--WSQDGALQD--TSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTT 74
Query: 156 GQEYLFHVMAVNENG-MGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPL 214
V+ ++ P + + P V V N+SW+
Sbjct: 75 VDIVTLRVLCREGVRWRVMAIQDFKPFE----NLRLMAPISLQVVHVETHRCNISWEISQ 130
Query: 215 DDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ--INIPNLIEGRQYEFRVYAQNEAGL 272
+ + W+ + Q I + L QYEF+V + G
Sbjct: 131 ASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGE 190
Query: 273 S-LPSSASNSVQIKDPMAAKAPE 294
S S + + AA +
Sbjct: 191 FTTWSPWSQPLAFRTKPAALGKD 213
Score = 45.2 bits (106), Expect = 2e-05
Identities = 19/123 (15%), Positives = 31/123 (25%), Gaps = 10/123 (8%)
Query: 461 VVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAP-IWDGGSNITNYIVE 519
M K + R P V + + W +
Sbjct: 85 REGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEAR 144
Query: 520 KREHPMSSWIRVGNT----RFTTMAITGLSPGHQYEFRVYAENVYGR----SDPSTTSDL 571
P +W + + + L+P QYEF+V + + G S S
Sbjct: 145 TLS-PGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAF 203
Query: 572 ITT 574
T
Sbjct: 204 RTK 206
Score = 39.0 bits (90), Expect = 0.002
Identities = 16/107 (14%), Positives = 25/107 (23%), Gaps = 4/107 (3%)
Query: 67 TVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVV 126
F PI L V + H C + W + +
Sbjct: 84 CREGVRWRVMAIQDFKPFENLRLMAPIS-LQVVHVETHRCNISWEISQASHYFERHLEFE 142
Query: 127 ERRDISMPHWI---CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG 170
R W ++ ++ LT +Y F V G
Sbjct: 143 ARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQG 189
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 59.2 bits (142), Expect = 2e-09
Identities = 20/171 (11%), Positives = 50/171 (29%), Gaps = 10/171 (5%)
Query: 107 TLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAV 166
+ W K + V+ + + + + + + +
Sbjct: 235 SCSWEVRK-EVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVP 293
Query: 167 NENGMGPPLEGINPIKAKSPYD-----KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRI 221
+ G + + P +A+ + +PP + V GD +L W+
Sbjct: 294 DPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVT--KDGDSYSLRWETMKMRYEHID 351
Query: 222 QGYWIDKHEVGSDAWQRVNVAICAPSQ-INIPNLIEGRQYEFRVYAQNEAG 271
+ I ++ + W+ + + +P L +Y RV +
Sbjct: 352 HTFEI-QYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRT 401
Score = 56.2 bits (134), Expect = 1e-08
Identities = 31/244 (12%), Positives = 62/244 (25%), Gaps = 16/244 (6%)
Query: 67 TVNLSNSSGSVSGTFTINITGLPGPPIGPLDVS-EITKHTCTLHWNPP------KYDGGL 119
S GT P P D+ + L W+ +
Sbjct: 84 VDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPG 143
Query: 120 KVTHYVVERR-DISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
+ VV +R S + + T + L Y+ V G
Sbjct: 144 DLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPS 203
Query: 179 NPIKAKSPYDKPSPPGIPVVTQV---GGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA 235
+P P + G ++ SW+ + S G + K + +
Sbjct: 204 KWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFY-KPSPDAGS 262
Query: 236 WQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI 295
+ C+P + ++ ++ + A SVQ + +
Sbjct: 263 AVLLREEECSP-VLREGLGSLHTRHHCQIPVPDPAT---HGQYIVSVQPRRAEKHIKSSV 318
Query: 296 IVPL 299
+ +
Sbjct: 319 NIQM 322
Score = 52.3 bits (124), Expect = 2e-07
Identities = 45/313 (14%), Positives = 83/313 (26%), Gaps = 28/313 (8%)
Query: 105 TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFH-- 162
T W + L + + + C + + + +
Sbjct: 18 HITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQ 77
Query: 163 --VMAVNENGMGPPLE--GINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGG 218
V+ + P G + + +P P ++ F L+W L
Sbjct: 78 SFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHF-LLTWSVALGSPQ 136
Query: 219 SRIQGYWIDKHEV----GSDAWQRVNVAICAPSQ--INIPNLIEGRQYEFRVYAQNEAG- 271
S + EV D+W+ + + SQ + +L+ Y RV + G
Sbjct: 137 SHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGS 196
Query: 272 --LSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ-----------NHNAQFQCTITG 318
PS S V +A + A + F
Sbjct: 197 RLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKP 256
Query: 319 CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
P + L E +P R + + + I +Y+ + K K+
Sbjct: 257 SPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKS 316
Query: 379 ELII-MTAPKFNV 390
+ I M P V
Sbjct: 317 SVNIQMAPPSLQV 329
Score = 50.0 bits (118), Expect = 1e-06
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 469 MDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW 528
+K ++ + PP +D DS +L W + ++ R+ +
Sbjct: 309 RAEKHIKSSVNIQMAPPSLQVTKD--GDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWK 366
Query: 529 IRVGNT--RFTTMAITGLSPGHQYEFRVYAENVYGRSD 564
T +MA+ L P +Y RV +
Sbjct: 367 DSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYN 404
Score = 48.8 bits (115), Expect = 3e-06
Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 10/146 (6%)
Query: 433 GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
H R ++ + D + + LG + Q +P P+ +
Sbjct: 61 ACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQ-HVQPPEPRDLQIST 119
Query: 493 IGHDSLALVWRAPIWDGGSNITN-----YIVEKREHPMSSW---IRVGNTRFTTMAITGL 544
D L W + S+ + + V + S I + NT T+ L
Sbjct: 120 DQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHL 178
Query: 545 SPGHQYEFRVYAENVYGRSDPSTTSD 570
P Y RV G S
Sbjct: 179 MPSSTYVARVRTRLAPGSRLSGRPSK 204
Score = 46.9 bits (110), Expect = 1e-05
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 8/114 (7%)
Query: 64 GDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
G Y V++ ++NI PP L V++ + +L W K
Sbjct: 299 GQYIVSVQPRRAEKHIKSSVNIQ--MAPP--SLQVTK-DGDSYSLRWETMKMRYEHIDHT 353
Query: 124 YVVE-RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV--MAVNENGMGPP 174
+ ++ R+D + T + + + L Y V G
Sbjct: 354 FEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIW 407
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 54.7 bits (131), Expect = 2e-09
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 11/101 (10%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKP--TISWLKGSREI---TPSARHHIFAEGD- 346
P+I V +AI + F C+ T +W + + H+ A+G
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 347 ----TYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELII 382
T L + +V Y C N G S A L I
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 36.2 bits (83), Expect = 0.005
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 13/97 (13%)
Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKIT--WYRDNEVIESG---GHFHVETS 440
P+ V P T G +V +T W DNE ++ + H+
Sbjct: 11 PQITVQPE---TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQ 67
Query: 441 ERH-----AILTIRDASNVDTAPYRVVAENDLGMDSA 472
IL +R+ Y+ V N G +
Sbjct: 68 GGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYS 104
Score = 29.3 bits (65), Expect = 1.2
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFT--------VLDDYIIIFIKEIRKEDAGDYTVNLS 71
+ D PM + + +Q + + +++ I+ ++ + G Y +S
Sbjct: 37 SSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVIS 96
Query: 72 NSSGSV 77
N GS
Sbjct: 97 NHFGSS 102
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 57.5 bits (138), Expect = 2e-09
Identities = 35/211 (16%), Positives = 59/211 (27%), Gaps = 38/211 (18%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITP----------------- 335
+ VP ++ + CT TG + W R
Sbjct: 3 RLSVP-PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTM 61
Query: 336 ---SARHHIFAEGDTYTLIINSVYGVDADEYVCRA-VNKGGVKSTKAELIIMTAPKF-NV 390
R + L++ D +YVC G A L + P+ V
Sbjct: 62 HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV 121
Query: 391 PPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVI----ESGGHFHVETSER--- 442
P + + + G P PKITWYR+ + + E ++ +
Sbjct: 122 SPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREA 181
Query: 443 ------HAILTIRDASNVDTAPYRVVAENDL 467
+ L +R + A + A L
Sbjct: 182 SGLLSLTSTLYLRLRKDDRDASFHCAAHYSL 212
Score = 29.0 bits (64), Expect = 3.9
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGD 65
++ + + ++ A Q E+ + + R LD + + E + D D
Sbjct: 36 FLTDRSGARPRLASAEMQGSEL----QVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERD 91
Query: 66 YT-VNLSNSSGSVSGTFTINITGLPGPPI 93
Y V + ++G+ T +N+ P
Sbjct: 92 YVCVVRAGAAGTAEATARLNVFAKPEATE 120
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 58.4 bits (140), Expect = 2e-09
Identities = 37/272 (13%), Positives = 81/272 (29%), Gaps = 32/272 (11%)
Query: 8 PEGDNTKVKIFY------AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
P+ + V + Y + E +T++ V F +V ++
Sbjct: 36 PDQEQRNVNLEYQVKINAPKEDDYETRITESKAVTILHMGFSASVRT-----ILQNDHSL 90
Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKV 121
A + ++ GT +N+T + + W +
Sbjct: 91 LASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGT--DAPED 148
Query: 122 THYVVERRDIS----MPHWIC----ISTTCH-DTTFIVQGLTEGQEYLFHVMAVNENGMG 172
T Y + R S + + C TFI+ V +++
Sbjct: 149 TQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGR--DWLAVLVNGSSKHSAI 206
Query: 173 PPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG 232
P + + + D+ +PP G +++ W+KP+ Y + H
Sbjct: 207 RPFDQLFAL---HAIDQINPPLNVTAEIEGTR-MSIQWEKPVSAFPIHCFDYEVKIHNTR 262
Query: 233 SDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
+ Q + + I + + +Y+ +V
Sbjct: 263 NGYLQIEKL----MTNAFISIIDDLSKYDVQV 290
Score = 49.1 bits (116), Expect = 2e-06
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 459 YRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN 515
V + + + D+ +PP T E I +++ W P+ + +
Sbjct: 195 VLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAE-IEGTRMSIQWEKPVSAFPIHCFD 253
Query: 516 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRV 554
Y V+ T I+ + +Y+ +V
Sbjct: 254 YEVKIHNTRNGYLQIEKLM--TNAFISIIDDLSKYDVQV 290
Score = 41.4 bits (96), Expect = 6e-04
Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 11/143 (7%)
Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ-GYWIDKHEVGSDAWQRVNVAICAPS 247
PP + G V L W D + Y + + D ++
Sbjct: 11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRIT-----E 65
Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
+ L G R QN SL +S+ S ++ P IV L
Sbjct: 66 SKAVTILHMGFSASVRTILQN--DHSLLASSWASAELHAP-PGSPGTSIVNLT--CTTNT 120
Query: 308 HNAQFQCTITGCPKPTISWLKGS 330
+ + +W+ G+
Sbjct: 121 TEDNYSRLRSYQVSLHCTWMVGT 143
Score = 38.7 bits (89), Expect = 0.004
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAP-IWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
PP T++ G + L W+ + + Y V+ +
Sbjct: 12 LLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESKA--- 68
Query: 541 ITGLSPGHQYEFRVYAEN--VYGRSDPSTTS 569
+T L G R +N S ++
Sbjct: 69 VTILHMGFSASVRTILQNDHSLLASSWASAE 99
Score = 36.8 bits (84), Expect = 0.014
Identities = 23/244 (9%), Positives = 48/244 (19%), Gaps = 26/244 (10%)
Query: 80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT-HYVVERRDISMPHWIC 138
+ PP+ + L W P V Y V+ +
Sbjct: 3 DLLPDEKISLLPPVN-FTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYET 61
Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP--PLEGINPIKAKSPYDKP------ 190
T T L G + N++ + SP
Sbjct: 62 RITESKAVT----ILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCT 117
Query: 191 --SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD------AWQRVNVA 242
+ + ++ +W D Y++ + +
Sbjct: 118 TNTTEDNYSRLRSYQVSLHCTWMVGTD--APEDTQYFLYYRYGSWTEECQEYSMDTLGRN 175
Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNA 302
I V ++ P ++ D + P +
Sbjct: 176 IACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQIN--PPLNVTAEIEG 233
Query: 303 NAIQ 306
+
Sbjct: 234 TRMS 237
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 56.6 bits (136), Expect = 3e-09
Identities = 34/195 (17%), Positives = 61/195 (31%), Gaps = 28/195 (14%)
Query: 105 TCTLHWNPPK----YDGGLKVTHY-------VVERRDISMPHWICISTTCHDTTFIVQGL 153
TC W+ + L++ ++ + C + I Q +
Sbjct: 19 TCR--WSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPI 76
Query: 154 TEGQEYLFHVMAVNENGMG--PPLEGINPIKAKSPYDKPSPPGIPVVTQVGG-DFVNLSW 210
Y + + G PP + P KP PP + +SW
Sbjct: 77 FLLSGYTMWIRINHSLGSLDSPPTC-VLPDS----VVKPLPPSSVKAEITINIGLLKISW 131
Query: 211 DKPLDDGGS---RIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ 267
+KP+ + +I+ Y + EV W+ V +++P Y +V +
Sbjct: 132 EKPVFPENNLQFQIR-YGLSGKEVQ---WKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCK 187
Query: 268 NEAGLSLPSSASNSV 282
GL S+ SN
Sbjct: 188 RLDGLGYWSNWSNPA 202
Score = 49.7 bits (118), Expect = 6e-07
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 459 YRVVAENDLG-MDSAIVKIQISD--RPDPPQFPTVEDIGHDS-LALVWRAPIWDGGSNIT 514
+ + LG +DS + +P PP E + L + W P++ N
Sbjct: 84 MWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVF--PENNL 141
Query: 515 NYIVE-KREHPMSSW--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR------SDP 565
+ + W V + + ++++ Y +V + + G S+P
Sbjct: 142 QFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNP 201
Query: 566 STT 568
+ T
Sbjct: 202 AYT 204
Score = 43.5 bits (102), Expect = 6e-05
Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 5/112 (4%)
Query: 66 YTVNLSNSSGSVS---GTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT 122
+ +++S GS+ + P PP I + W P + +
Sbjct: 84 MWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPEN-NLQ 142
Query: 123 HYVVERRDISMPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAVNENGMGP 173
+ W + + Y V +G+G
Sbjct: 143 FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGY 194
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 52.9 bits (127), Expect = 7e-09
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 291 KAPEIIVPL-RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF------- 342
K + PL +N ++ A C + ++ W +++
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63
Query: 343 --AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
A ++ ++ V D +Y C + VK++KA L ++ P
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTCS-LFTMPVKTSKAYLTVLGVP 108
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 53.1 bits (127), Expect = 8e-09
Identities = 11/104 (10%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE--------ITPSARHHI-FA 343
+ + +C + ++ WL S + ++++ +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
+ ++ + +V D Y C V + + ++I++ K
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCL-HYSDSVSTKEVKVIVLATMK 104
Score = 32.7 bits (74), Expect = 0.099
Identities = 9/97 (9%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI---------LTIRDASN 453
G+ + +K + + W + + V + ++ + +T+ + +
Sbjct: 16 GQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTL 75
Query: 454 VDTAPYR-VVAENDLGMDSAIVKIQISDRPDPPQFPT 489
D Y+ + + + V + + + + ++P+
Sbjct: 76 QDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPS 112
Score = 30.0 bits (67), Expect = 0.86
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 29 LTKNGRVVQSDDRFKFTVLDDYII-IFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITG 87
+ N V + +++ + I + + +D G Y S + + +
Sbjct: 43 IFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLA 101
Query: 88 LPGPPI 93
Sbjct: 102 TMKGEF 107
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 52.3 bits (125), Expect = 1e-08
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 15/107 (14%)
Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS----------ARH 339
+ ++ L + +A F ++ + T W E+ + R+
Sbjct: 6 SGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRY 63
Query: 340 HIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
I +G + LI+++V D+ V + GV+ + A L I +
Sbjct: 64 RIEQKGLQHRLILHAVKHQDSGALVG--FSCPGVQDS-AALTIQESS 107
Score = 30.7 bits (69), Expect = 0.35
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 13/74 (17%)
Query: 31 KNGRVVQSDDRFKFTVLDDYIIIF----------IKEIRKEDAGDYTVNLSNSSGSVSGT 80
NG ++S++ + ++ +D+G + S V +
Sbjct: 42 LNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDS 98
Query: 81 FTINITGLPGPPIG 94
+ I GP G
Sbjct: 99 AALTIQESSGPSSG 112
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 52.1 bits (125), Expect = 1e-08
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWD-GGSNITNYIVEKREH---PMSSWIRVG-NTRF 536
P + + ++ L W + I + + R S + +
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+I+ L P Y+ ++ N G S+ S T
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETK 106
Score = 49.8 bits (119), Expect = 8e-08
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDK-PLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
+ P I V + L W P + + I G++I SD + +
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 249 --INIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
+I +L Y+ ++ NE G S S+
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNV 100
Score = 49.4 bits (118), Expect = 1e-07
Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 9/115 (7%)
Query: 86 TGLPGPPIGPLDVS--EITKHTCTLHWN-PPKYDGGLKVTHYVVERRDIS---MPHWICI 139
+G GP GP + + T L W P + + + + R +
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
+ L Y + NE G + ++ G
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSN---VMICETKARSGPSSG 114
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 51.7 bits (124), Expect = 2e-08
Identities = 15/93 (16%), Positives = 21/93 (22%), Gaps = 3/93 (3%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
+ L L W +Y + V R +
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVL---L 66
Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
T L P Y RV G S + T+
Sbjct: 67 TKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS 99
Score = 50.6 bits (121), Expect = 4e-08
Identities = 11/89 (12%), Positives = 22/89 (24%), Gaps = 4/89 (4%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
+G L + + L W + Y + + +
Sbjct: 6 SGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEP--- 62
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
++ L Y+ V + G GP
Sbjct: 63 -RVLLTKLQPDTTYIVRVRTLTPLGPGPF 90
Score = 47.1 bits (112), Expect = 7e-07
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 9/97 (9%)
Query: 190 PSPPGIPV-VTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
S G+ + + + + L+W Y + + Q V +
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVL-----EPR 63
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
+ + L Y RV G P S + +
Sbjct: 64 VLLTKLQPDTTYIVRVRTLTPLG---PGPFSPDHEFR 97
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 50.7 bits (122), Expect = 2e-08
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
P P S+ L W A +T Y V + TT I
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTAS--TDNVGVTGYDVY------NGTALATTVTGTTATI 55
Query: 542 TGLSPGHQYEFRVYAENVYG-RSDPSTT 568
+GL+ Y F V A++ G S S
Sbjct: 56 SGLAADTSYTFTVKAKDAAGNVSAASNA 83
Score = 48.8 bits (117), Expect = 1e-07
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
P+ P T + LSW D+ G + GY +V + +
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGY-----DVYNGT---ALATTVTGTTA 53
Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
I L Y F V A++ AG S+ASN+V +K
Sbjct: 54 TISGLAADTSYTFTVKAKDAAGNV--SAASNAVSVK 87
Score = 47.7 bits (114), Expect = 3e-07
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
P P L + T + TL W + G VT Y V +TT TT
Sbjct: 4 PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGTAL-------ATTVTGTTA 53
Query: 149 IVQGLTEGQEYLFHVMAVNENG 170
+ GL Y F V A + G
Sbjct: 54 TISGLAADTSYTFTVKAKDAAG 75
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 51.3 bits (123), Expect = 2e-08
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
P P G V + + +T L WN Y V+R S + I+T T +
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAAPG-----ANSYNVKRSTKSGGPYTTIATNITSTNY 59
Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPP 174
G+ G +Y + V AV+
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETLN 85
Score = 49.7 bits (119), Expect = 8e-08
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 484 PPQFPT----VEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-NTRFTT 538
P FPT V D ++ L W A +Y V++ + + N T
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNITSTN 58
Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
TG++ G +Y + V A + + S + L
Sbjct: 59 YTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 45.5 bits (108), Expect = 2e-06
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 190 PSPP-GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
P+ P G+ V G+ NL+W+ Y + + + + I + +
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNITSTN- 58
Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
+ G +Y + V A + +L S+ +
Sbjct: 59 YTDTGVATGTKYYYVVSAVSNGVETLNSAEAIL 91
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 53.6 bits (128), Expect = 3e-08
Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 49/236 (20%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCP---KPTISWLKGSRE-----------------I 333
++ P A+ +A C + + W+ S
Sbjct: 6 SVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSA 65
Query: 334 TPSARHHIFAEG---DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNV 390
R I +G L I++V D+ +Y+C + + EL
Sbjct: 66 PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL---KVAALGS 122
Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI----------ESGGHFHVETS 440
Y D G ++ + YP+P+I W + + G + V S
Sbjct: 123 DLHVDVKGYKDGGIHLECRST-GWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAAS 181
Query: 441 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHD 496
+ +R +S + L I I+D P F + + H
Sbjct: 182 -----VIMRGSSGEG---VSCTIRSSLLGLEKTASISIAD----PFFRSAQHHHHH 225
Score = 40.5 bits (94), Expect = 7e-04
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 3/95 (3%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGD-TY 348
A + ++ +C TG P+P I W E P+ + A+G Y
Sbjct: 117 VAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLY 176
Query: 349 TLIINSVYGVDADE-YVCRAVNKGGVKSTKAELII 382
+ + + + E C + A + I
Sbjct: 177 AVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211
Score = 28.5 bits (63), Expect = 4.7
Identities = 13/109 (11%), Positives = 25/109 (22%), Gaps = 8/109 (7%)
Query: 9 EGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT 67
V ++ G + S GR D + + I + D+G Y
Sbjct: 44 SSLRQVVNVYADGKEVEDRQSAPYRGRTSILRD----GITAGKAALRIHNVTASDSGKYL 99
Query: 68 VNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH---WNPP 113
+ + + L + + W P
Sbjct: 100 CYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQ 148
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 52.8 bits (126), Expect = 5e-08
Identities = 27/200 (13%), Positives = 51/200 (25%), Gaps = 21/200 (10%)
Query: 107 TLHWNPPKYDGGLKVTHYVVERRDISMP-HWI----CISTT---CHDTTFIVQGLTEGQE 158
L W P + Y V + W C T C Q L +
Sbjct: 22 YLTWLPGLGNPQD--VTYFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYN--K 77
Query: 159 YLFHVMAVNENGMGPPLEGINPIKAKSPYD--KPSPPGIPVVTQVGGDFVNLSWDKPLDD 216
+ V V+ + P +E + +P+PP + + N ++ P
Sbjct: 78 FKGRVRTVSPSSKSPWVE----SEYLDYLFEVEPAPPVLVLTQTEEILSANATYQLPPCM 133
Query: 217 GGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
++ Y + + G+ V + + S
Sbjct: 134 PPLDLK-YEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYS 192
Query: 277 SASNS--VQIKDPMAAKAPE 294
S ++ P A +
Sbjct: 193 KFSKPTCFLLEVPEANASGS 212
Score = 32.3 bits (73), Expect = 0.32
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE-KREHPMSSWIRVGNTRFTT---- 538
PPQ T+ + S+ L W G Y V + W V T
Sbjct: 8 PPQNVTLLSQ-NFSVYLTWLPG--LGNPQDVTYFVAYQSSPTRRRWREVEECAGTKELLC 64
Query: 539 --MAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
M + ++++ RV + +S +
Sbjct: 65 SMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESE 97
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 50.0 bits (120), Expect = 6e-08
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 89 PGPPIGPLDVSEITKHTCTLHWNPPKYDG--GLKVTHYVVERRDISMPHWICISTTCHDT 146
G P L V+ +T T L W+PP G ++ Y V RDI+ + TT DT
Sbjct: 9 SGFPQN-LHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNITT--DT 64
Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPP 174
F + GL Y V A G GP
Sbjct: 65 RFTLTGLKPDTTYDIKVRAWTSKGSGPL 92
Score = 47.3 bits (113), Expect = 4e-07
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSN--ITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
PQ V + + L W P+ N I +Y V R+ ++ T T +
Sbjct: 11 FPQNLHVTGLTTSTTELAWDPPVLAE-RNGRIISYTVVFRDINSQQELQNITTD-TRFTL 68
Query: 542 TGLSPGHQYEFRVYAENVYGRSDPS 566
TGL P Y+ +V A G S
Sbjct: 69 TGLKPDTTYDIKVRAWTSKGSGPLS 93
Score = 47.3 bits (113), Expect = 5e-07
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 183 AKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDG--GSRIQGYWIDKHEVGSDAWQRV 239
S PS P VT + L+WD P+ G RI Y + ++ S +
Sbjct: 1 GSSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQN 59
Query: 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
++ + L Y+ +V A G S
Sbjct: 60 ITTD---TRFTLTGLKPDTTYDIKVRAWTSKGSGPLSP 94
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 51.5 bits (123), Expect = 7e-08
Identities = 25/189 (13%), Positives = 56/189 (29%), Gaps = 34/189 (17%)
Query: 303 NAIQNHNAQFQCTITGCPKPTISWLKGSREIT----------PSARHHIFAEGDTYTLII 352
+ N F P + W K ++ S ++ ++ + + +L I
Sbjct: 6 YGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64
Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIM-TAPKFNVPPRFRDTAYFDKGENVVVKIP 411
++ D DEY + N ++ M + P + N +
Sbjct: 65 YNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYW-----------ECSNATLTCE 113
Query: 412 FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS 471
++ Y+ E + S T+ AP++ A N + +S
Sbjct: 114 VLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQES 162
Query: 472 AIVKIQISD 480
+ + +
Sbjct: 163 EMEVVNCPE 171
Score = 34.1 bits (78), Expect = 0.061
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 6/110 (5%)
Query: 5 LYIPEGDNTK-VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDA 63
++P K V D+ E+ ++ +R + I + D
Sbjct: 15 FHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL-DTVSGSLT-IYNLTSSDE 72
Query: 64 GDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP 113
+Y + N + ++ F + + + P+ + S T TC +
Sbjct: 73 DEYEMESPNITDTM--KFFLYVLEMVSKPMIYWECSNATL-TCEVLEGTD 119
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 49.7 bits (119), Expect = 1e-07
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 10/114 (8%)
Query: 90 GPPIGPLDVSEITKHTCTLHWNPPKYD---GGLKVTHYVVE-RRDISMPHWICISTTCHD 145
P L + + +HW PP G ++T Y + R+ +
Sbjct: 20 AAPQN-LSLEVRNSKSIMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVSGTQ 76
Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT 199
+ +++GL G EY F V A+ NG GP + + A++ +P V+
Sbjct: 77 LSQLIEGLDRGTEYNFRVAALTINGTGPATD---WLSAETFESDLDETRVPEVS 127
Score = 47.4 bits (113), Expect = 1e-06
Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 12/135 (8%)
Query: 170 GMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDD---GGSRIQGYW 225
G + ++ D PS P + + + W P G +I GY
Sbjct: 1 GSSGSS---GDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNG--QITGYK 55
Query: 226 IDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
I + + + I L G +Y FRV A G P++ S +
Sbjct: 56 IRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTG-PATDWLSAETF 114
Query: 286 --DPMAAKAPEIIVP 298
D + PE+ P
Sbjct: 115 ESDLDETRVPEVSGP 129
Score = 43.9 bits (104), Expect = 2e-05
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 12/126 (9%)
Query: 468 GMDSAIVKIQ-ISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSN--ITNYIV----E 519
S V ++ +SD P PQ ++E S+ + W+ P N IT Y +
Sbjct: 3 SGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPAT-QNGQITGYKIRYRKA 61
Query: 520 KREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELL 579
R+ ++ + G + I GL G +Y FRV A + G + T+ L
Sbjct: 62 SRKSDVTETLVSGTQ--LSQLIEGLDRGTEYNFRVAALTINGTGPATDWL-SAETFESDL 118
Query: 580 SGMEAP 585
P
Sbjct: 119 DETRVP 124
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 49.4 bits (117), Expect = 3e-07
Identities = 13/131 (9%), Positives = 41/131 (31%), Gaps = 10/131 (7%)
Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
+ + S + + + + + + +C + ++
Sbjct: 12 FERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQ 71
Query: 326 WLKGSREI--------TPSARHHIFAEG-DTYTLIINSVYGVDADEYVCRAVNKGGVKST 376
W +++ R + ++ I++V D EY C + V++
Sbjct: 72 WSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS-IFTMPVRTA 130
Query: 377 KAELIIMTAPK 387
K+ + ++ P+
Sbjct: 131 KSLVTVLGIPQ 141
Score = 29.0 bits (64), Expect = 2.2
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 29 LTKNGRVVQSDDRFK--FTVLDDYIIIFIKEIRKEDAGDYT--VNLSNSSGSVSGTFTIN 84
L + D+R + + + I I + D G+YT + + + +
Sbjct: 80 LYFGEKRALRDNRIQLVTSTPHELSIS-ISNVALADEGEYTCSI---FTMPVRTAKSLVT 135
Query: 85 ITGLPGPPI 93
+ G+P PI
Sbjct: 136 VLGIPQKPI 144
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 50.5 bits (120), Expect = 3e-07
Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 37/226 (16%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPT-----ISWLK-------------GSREITP 335
+ P + C + ++W + +
Sbjct: 2 VVQAP-TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 336 SARHHIFAEGDT-----YTLIINSVYGVDADEYVCRAVNKG-GVKSTKAELIIMTAPKFN 389
S R A +L + + D Y C V G +S L ++ P+
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQ-- 118
Query: 390 VPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSER---HAI 445
+ + + G P +ITW+ D + S ++
Sbjct: 119 -NTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSL 177
Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
+ +S VD E++ ++ + ++ +P
Sbjct: 178 WILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLT-----VYYPHHH 218
Score = 28.1 bits (62), Expect = 7.0
Identities = 19/104 (18%), Positives = 26/104 (25%), Gaps = 11/104 (10%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYII-----IFIKEIRKEDAGDYTVNLSNS-S 74
M V G R +F + + +R ED G YT
Sbjct: 43 ESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQ 102
Query: 75 GSVSGTFTINITGLPGPPIGPLDVSEITKH----TCTLH-WNPP 113
GS S + + P V + C PP
Sbjct: 103 GSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPP 146
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 50.5 bits (120), Expect = 3e-07
Identities = 25/197 (12%), Positives = 50/197 (25%), Gaps = 23/197 (11%)
Query: 89 PGPPIGPLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CISTTC 143
P V + + L W+ G T Y +E + W+ C T
Sbjct: 2 EDPSDLLQHVKFQSSNFENILTWDSGP--EGTPDTVYSIEYKTYGERDWVAKKGCQRITR 59
Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYD--KPSPPGIPVVTQV 201
V+ + Y V AV+ G S PP + +++V
Sbjct: 60 KSCNLTVETGNLTELYYARVTAVSAGGRSATKM----TDRFSSLQHTTLKPPDVTCISKV 115
Query: 202 GGDFVNLSWDKPL--DDGGSRI---QGYWIDKHEVG---SDAWQRVNVAICAPSQINIPN 253
+ + G R+ + + + + +Q +
Sbjct: 116 RSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGG--KQREYEFFG 173
Query: 254 LIEGRQYEFRVYAQNEA 270
L ++ +
Sbjct: 174 LTPDTEFLGTIMILVPT 190
Score = 40.8 bits (95), Expect = 5e-04
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTR 535
D D Q + +++ L W + G+ T Y +E + + W+
Sbjct: 2 EDPSDLLQHVKFQSSNFENI-LTWDSG--PEGTPDTVYSIEYKTYGERDWVAKKGCQRIT 58
Query: 536 FTTMAITG--LSPGHQYEFRVYAENVYGRSDPSTT 568
+ +T + Y RV A + GRS T
Sbjct: 59 RKSCNLTVETGNLTELYYARVTAVSAGGRSATKMT 93
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 48.2 bits (115), Expect = 3e-07
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 10/113 (8%)
Query: 170 GMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI-- 226
G P+ ++ PS P + + + W +P + G +IQGY +
Sbjct: 1 GSSGSSG---PVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYY 56
Query: 227 -DKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
+ W + NVA I NL+ + Y +V A G SS
Sbjct: 57 TMDPTQHVNNWMKHNVA--DSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107
Score = 46.6 bits (111), Expect = 1e-06
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 82 TINITGLPGPPIGP---LDVSEITKHTCTLHWNPPKYDGGLKVTHYVV---ERRDISMPH 135
+ P + ++ T + W P+ G ++ Y V + +
Sbjct: 8 PVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNN 66
Query: 136 WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
W+ + + L + Y V+A G GP
Sbjct: 67 WMKHNVA-DSQITTIGNLVPQKTYSVKVLAFTSIGDGPL 104
Score = 46.6 bits (111), Expect = 1e-06
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 6/112 (5%)
Query: 468 GMDSAIVKIQIS-DRP-DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV---EKRE 522
S V Q S P P+ + ++ + W+ P G I Y V
Sbjct: 3 SGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPT 61
Query: 523 HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
+++W++ I L P Y +V A G S+ +IT
Sbjct: 62 QHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ 113
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 48.1 bits (115), Expect = 4e-07
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 12/119 (10%)
Query: 82 TINITGLPGPPIGP---LDVSEITKHTCTLHWNPPKYDG------GLKVTHYVVERRDIS 132
+ I+ P GP + + +T + + W PK + G ++ +
Sbjct: 5 SSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNG 64
Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
+ + T + + L + +Y V A N G GP I A + PS
Sbjct: 65 QYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS---EINATTLESGPS 120
Score = 42.7 bits (101), Expect = 3e-05
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 179 NPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPL-DDGGSRIQGY---WIDKHEVGS 233
+ P PP + V + ++W P + I+GY + + +
Sbjct: 4 GSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSN 63
Query: 234 DAWQRVNVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
+ V + S + NL + QY V A N AG SS
Sbjct: 64 GQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS 108
Score = 40.0 bits (94), Expect = 3e-04
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 480 DRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGS-NITNYIV--------EKREHPMSSWI 529
PD PP T++ + S+ + W+AP + + I Y + ++ +
Sbjct: 13 AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 72
Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
G++ T + L QY V A N G S+ + T
Sbjct: 73 ATGDSEVYT--LDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT 114
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 49.7 bits (118), Expect = 5e-07
Identities = 34/210 (16%), Positives = 57/210 (27%), Gaps = 25/210 (11%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
+ + R A + + C+ T CP+P L+ T R+ G +
Sbjct: 1 EPFWADLQPRVAFVERGGSLWLNCS-TNCPRPERGGLE-----TSLRRNGT-QRGLRWLA 53
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF----NVPPRFRDTAYFDKGENV 406
+ VC + + P +PP GEN
Sbjct: 54 RQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQP------VGENF 107
Query: 407 VVKIPFTG-YPKPK--ITWYRDNEVIESGGHFHVETSERHAI--LTIRDASNVDTAPYRV 461
+ G P+ +T R + + R A+ T+ A +
Sbjct: 108 TLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSC 167
Query: 462 VAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
AE DL + S P + T
Sbjct: 168 RAELDLRPHGLGLFENSS---APRELRTFS 194
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 47.4 bits (113), Expect = 6e-07
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 6/90 (6%)
Query: 91 PPIGPLDVS--EITKHTCTLHWN-PPKYDGGLKVTHYVV---ERRDISMPHWICISTTCH 144
P GP ++ L W P + + + + + +
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
++ L Y + NE G
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEF 93
Score = 46.6 bits (111), Expect = 1e-06
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 484 PPQFPTVEDIGHDSLALVWRAPIWD-GGSNITNYIV---EKREHPMSSWIRV---GNTRF 536
P E + + L W + I + + S + R G+ ++
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQW 66
Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
I L P Y+ ++ N G S+ S T
Sbjct: 67 HM--IGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 46.2 bits (110), Expect = 1e-06
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 190 PSPPGIPVVTQVGGDFVNLSWDK-PLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
+ P I V + L W P + + IQG++I SD + S+
Sbjct: 5 ITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSK 64
Query: 249 --INIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
I +L Y+ ++ NE G S S+
Sbjct: 65 QWHMIGHLQPETSYDIKMQCFNEGGESEFSN 95
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 46.9 bits (111), Expect = 9e-07
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 189 KPSPPGIPVVTQVGGD--FVNLSWDKP--LDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
KP PP V V + + ++W P D S +++ + D WQ V +
Sbjct: 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVEL--S 64
Query: 245 APSQINIPNLIEGRQYEFRVYAQNE 269
+ I + G++Y +V A++
Sbjct: 65 NGTAHTITDAYAGKEYIIQVAAKDN 89
Score = 45.8 bits (108), Expect = 2e-06
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 473 IVKIQISDRPDPPQFPTVEDI--GHDSLALVWRAPI-WDGGSNIT-NYIVEKREHPMSSW 528
VK PDPP+ + L + W+ P W + + + R + W
Sbjct: 5 SVK------PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQW 58
Query: 529 IRVGNTRFTTMAITGLSPGHQYEFRVYAENVY 560
V + T IT G +Y +V A++
Sbjct: 59 QHVELSNGTAHTITDAYAGKEYIIQVAAKDNE 90
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 47.0 bits (112), Expect = 1e-06
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 17/116 (14%)
Query: 90 GPPIGPLDVSEITKHTCTLHWNPPKYD---GGLKVTHYVV--------ERRDISMPHWIC 138
P + V+ + +HW+P G + Y + +R+
Sbjct: 16 VAPGN-VRVNVVNSTLAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHIEKKI 72
Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
++ T ++ GL Y +V VN G GP +P G
Sbjct: 73 LTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP---DRVFNTPEGSGPSSG 125
Score = 40.5 bits (95), Expect = 2e-04
Identities = 21/111 (18%), Positives = 29/111 (26%), Gaps = 13/111 (11%)
Query: 179 NPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDD---GGSRIQGYWI------DK 228
+ S D P PG V V + WD G +QGY I
Sbjct: 3 SGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSS 60
Query: 229 HEVGSDAWQRVNVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
+ ++ + +P L Y V N G S
Sbjct: 61 SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPD 111
Score = 36.6 bits (85), Expect = 0.004
Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 17/108 (15%)
Query: 480 DRPD-PPQFPTVEDIGHDSLALVWRAPIWD---GGSNITNYIV----------EKREHPM 525
D P P V + + W G ++ Y + R H
Sbjct: 12 DLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHIE 69
Query: 526 SSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
+ ++ M + GL P Y V N G S T
Sbjct: 70 KKILTFQGSKTHGM-LPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT 116
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 46.7 bits (111), Expect = 1e-06
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 7/112 (6%)
Query: 170 GMGPPLEGINPIKAKSPYDKPS--PPGIPVVTQVGGDFVNLSWDKP-LDDGGSRIQGYWI 226
G I A + PS P + V D V++ W KP + GY I
Sbjct: 1 GSSGSSG---WILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRI 57
Query: 227 DKHEVGSDAWQRVNVAICAP-SQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
+ + + + S+ I + R+ A G+ S
Sbjct: 58 SHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSD 109
Score = 40.6 bits (95), Expect = 2e-04
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 91 PPIGPLDVSEITKHTCT---LHWNPP--KYDGGLKVTHYVVERRDISMPHW--ICISTTC 143
P + PL+V+ + + W P K G ++ Y + S +
Sbjct: 18 PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDG-ELVGYRISHVWQSAGISKELLEEVGQ 76
Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
+ + + + AV G+GP
Sbjct: 77 NGSRARISVQVHNATCTVRIAAVTRGGVGPF 107
Score = 37.1 bits (86), Expect = 0.003
Identities = 16/108 (14%), Positives = 27/108 (25%), Gaps = 10/108 (9%)
Query: 468 GMDSAIVKIQ-ISDRPD-PPQFPTVE-DIGHDSLALVWRAPIWDG-GSNITNYIVEKREH 523
S + P P TV + D++ + W P + Y +
Sbjct: 3 SGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQ 62
Query: 524 ---PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYG---RSDP 565
+ + I+ R+ A G SDP
Sbjct: 63 SAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDP 110
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 46.4 bits (110), Expect = 2e-06
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDK-PLDDGGSRIQGYWIDK 228
G + + PS P VV V L+W++ + S + GY +
Sbjct: 1 GSSGSSG---TVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFY 57
Query: 229 HEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
+ Q +N + + L Y V A + G S
Sbjct: 58 RTSSQNNVQVLNT---NKTSAELV-LPIKEDYIIEVKATTDGGDGTSSE 102
Score = 46.0 bits (109), Expect = 2e-06
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 82 TINITGLPGPPIGPLD--VSEITKHTCTLHWNPPK-YDGGLKVTHYVVERRDISMPHWIC 138
T+N+T PP P V T L+W K + +VT Y V R S +
Sbjct: 8 TVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQV 67
Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
++T T L ++Y+ V A + G G
Sbjct: 68 LNTN---KTSAELVLPIKEDYIIEVKATTDGGDGTS 100
Score = 34.4 bits (79), Expect = 0.022
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 7/90 (7%)
Query: 484 PPQFPTVEDIGHDSLALVWRA-PIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT 542
PP + L W + S +T Y V R ++ + + T A
Sbjct: 21 PPGNVVWNATDT-KVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNK--TSAEL 77
Query: 543 GLSPGHQYEFRVYAENVYG---RSDPSTTS 569
L Y V A G S+
Sbjct: 78 VLPIKEDYIIEVKATTDGGDGTSSEQIRIP 107
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 45.8 bits (108), Expect = 2e-06
Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
T +I SL L+W+ + SN T Y + SS + V R I
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDSSNLNVSEPRAV---I 63
Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTS 569
GL Y V P
Sbjct: 64 PGLRSSTFYNITVCPVLGDIEGTPGFLQ 91
Score = 35.8 bits (82), Expect = 0.005
Identities = 17/95 (17%), Positives = 23/95 (24%), Gaps = 6/95 (6%)
Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
S + + L W D+ S Y I H G +NV+
Sbjct: 3 SGSSGAIQVFDVTAVNISATSLTLIWKVS-DNESSSNYTYKI--HVAGETDSSNLNVSE- 58
Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
+ IP L Y V P
Sbjct: 59 --PRAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQ 91
Score = 35.4 bits (81), Expect = 0.007
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 12/105 (11%)
Query: 91 PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIV 150
+ + I+ + TL W + T Y + + + + ++
Sbjct: 9 IQVFDVTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDS----SNLNVSEPRAVI 63
Query: 151 QGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGI 195
GL Y V V + G P + P P G
Sbjct: 64 PGLRSSTFYNITVCPVLGDIEGTPGF-------LQVHTPPVPSGP 101
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 46.6 bits (111), Expect = 2e-06
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 170 GMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKP-LDDGGSRIQGYWID 227
G I+A++ PS PP + +G V +SW P D I Y +
Sbjct: 1 GSSGSS---GTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVA 57
Query: 228 KHEVGSDAWQRVNVAICAPSQ--INIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
V + R V + ++ L + +Y V A + G SS
Sbjct: 58 YEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESS 109
Score = 44.7 bits (106), Expect = 8e-06
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 9/114 (7%)
Query: 468 GMDSAIVKIQ-ISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSN--ITNYIV----E 519
S ++ + P PPQ +G ++ + W P D N IT Y V
Sbjct: 3 SGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADS-RNGVITQYSVAYEAV 61
Query: 520 KREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
E + + ++ + GL +Y V A G S+ + T
Sbjct: 62 DGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRT 115
Score = 42.0 bits (99), Expect = 7e-05
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 90 GPPIGPLDVSEITKHTCTLHWNPPKYDG------GLKVTHYVVERRDISMPHWICISTTC 143
PP + + T + W PP D V + V+ D IS
Sbjct: 20 APPQK-VMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISRE- 77
Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
+++ + GL + EY V A + G GP P+ ++ D PS P
Sbjct: 78 -HSSWDLVGLEKWTEYRVWVRAHTDVGPGPESS---PVLVRTDEDVPSGP 123
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 47.7 bits (113), Expect = 2e-06
Identities = 20/168 (11%), Positives = 50/168 (29%), Gaps = 13/168 (7%)
Query: 321 KPTISWLKGSREITPS--ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG--VKST 376
K ++ + G I P R + +++I ++ D Y C + K
Sbjct: 37 KMVLTMMSGDMNIWPEYKNRTIFDITNN-LSIVILALRPSDEGTYECVVLKYEKDAFKRE 95
Query: 377 KAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH 436
+ ++ P D ++ G+P+P ++W + E + +
Sbjct: 96 HLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTV 155
Query: 437 VETSER-----HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
+ E + L +N + + + + +
Sbjct: 156 SQDPETELYAVSSKLDFNMTTNHS---FMCLIKYGHLRVNQTFNWNTA 200
Score = 36.1 bits (83), Expect = 0.015
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 307 NHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIF-AEGDTYTLIIN-SVYGVDADEY 363
++ + C+ +G P+P +SWL+ E+ E + Y + +
Sbjct: 121 SNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSF 180
Query: 364 VCRAVNKG 371
+C
Sbjct: 181 MCLIKYGH 188
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 46.0 bits (108), Expect = 2e-06
Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 13/104 (12%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCP---KPTISWLKGSR---EITPSARHHIFAEGD--- 346
+ + + +A + G KPTI W KG AR +
Sbjct: 16 LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSAS 75
Query: 347 ---TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
T L I V D Y K S + + AP+
Sbjct: 76 NVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV-EAPR 118
Score = 40.9 bits (95), Expect = 1e-04
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 402 KGENVVVKIPFTGYP---KPKITWYRDN---EVIESGGHFHV-ETSERHAI-----LTIR 449
G++ VV G KP I W++ +SG F E+ + L I
Sbjct: 26 TGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIG 85
Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQI 478
D YR+ + DS I +
Sbjct: 86 KVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 32.1 bits (72), Expect = 0.16
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 2 PNALYIPEGDNTKVKIFYAGDQ---PMEVS---------LTKNGRVVQSDDRFKFTVLDD 49
P+++ + G + V G + + +K+G +
Sbjct: 19 PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVY 78
Query: 50 YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
+ + I ++ D G Y + + S F I++
Sbjct: 79 TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 48.7 bits (115), Expect = 2e-06
Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 15/178 (8%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
+ V + + C+ T C +P + ++ TP + + G+ +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCS-TSCDQPKLLGIE-----TPLPKKELLLPGNNRKVYEL 54
Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT 413
S + + +C + G + K L + P+ ++ G+N+ ++
Sbjct: 55 SNVQ-EDSQPMCYSNCPDGQSTAKTFLTVYWTPER--VELAPLPSWQPVGKNLTLRCQVE 111
Query: 414 G-YPKPKIT--WYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
G P+ +T R + ++ E +E + +R A + E DL
Sbjct: 112 GGAPRANLTVVLLRGEKELKREP-AVGEPAEVTTTVLVRRDH--HGANFSCRTELDLR 166
Score = 46.4 bits (109), Expect = 1e-05
Identities = 22/204 (10%), Positives = 52/204 (25%), Gaps = 16/204 (7%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGC---PKPTISWLKGSREITPSARHHIFAEGDTYT 349
+ + + N +C + G T+ L+G +E+ R E T
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK---REPAVGEPAEVT 143
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNV------PPRFRDTAYFDKG 403
+ + CR + + + PP+ +
Sbjct: 144 TTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD 203
Query: 404 ENVVVKIPFTGYPKP---KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
V G ++ ++ + + ++ A +++ A + T
Sbjct: 204 TQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLT 262
Query: 461 VVAENDLGMDSAIVKIQISDRPDP 484
+ + I P P
Sbjct: 263 CAVILGNQSQETLQTVTIYSFPAP 286
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 47.5 bits (112), Expect = 3e-06
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 459 YRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVE-DIGHDSLALVWRAP-IWDGGSNI 513
+ +G + + +P+ P +V G + + + + +
Sbjct: 87 GKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKV 146
Query: 514 TNYIVEKREHPMSSWIRVGNTRFTTMAIT--GLSPGHQYEFRV 554
+ V R+ + N T + + L P YE +V
Sbjct: 147 LMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189
Score = 44.8 bits (105), Expect = 3e-05
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 5/103 (4%)
Query: 66 YTVNLSNSSG---SVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP--KYDGGLK 120
N+ G + P P V + + +N +
Sbjct: 87 GKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKV 146
Query: 121 VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV 163
+ H V R++ W ++ + T + + L Y V
Sbjct: 147 LMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189
Score = 42.1 bits (98), Expect = 2e-04
Identities = 25/191 (13%), Positives = 59/191 (30%), Gaps = 17/191 (8%)
Query: 102 TKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLF 161
++H+ T + P + ++ ++ + T +
Sbjct: 35 SQHSLTCAFEDPDVNTTNLEFEICGALVEVKCLNFRKLQEIYFIETKKFL-------LIG 87
Query: 162 HVMAVNENGMGPPLEG-INPIKAKSPYDKPSPP-GIPVVTQVGGDFVNLSWDKP-LDDGG 218
+ G I+ KP P + VV + G + ++++ L
Sbjct: 88 KSNICVKVGEKSLTCKKIDLTT----IVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKY 143
Query: 219 SRIQGYWID-KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
++ + + + E + W VN++ + + L YE +V + + S
Sbjct: 144 VKVLMHDVAYRQEKDENKWTHVNLSSTKLT-LLQRKLQPAAMYEIKVRSIPDHYFKGFWS 202
Query: 278 A-SNSVQIKDP 287
S S + P
Sbjct: 203 EWSPSYYFRTP 213
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 45.4 bits (108), Expect = 3e-06
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 8/110 (7%)
Query: 170 GMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDK 228
G S D PS P V + +++ W+ L+ ++ Y I
Sbjct: 1 GSSGSSG---VAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRY 54
Query: 229 HEVGSDAWQRVNVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
V + + + NL+ QY V A N AG PS
Sbjct: 55 WAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSD 104
Score = 44.3 bits (105), Expect = 1e-05
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 468 GMDSAIVKIQ-ISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV---EKRE 522
S + I D P P V+ + +++ W + + +Y + +
Sbjct: 3 SGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHD 59
Query: 523 HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
++ ++ + + L P QY V A N G PS + T
Sbjct: 60 KEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT 110
Score = 40.4 bits (95), Expect = 2e-04
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 11/108 (10%)
Query: 90 GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVV---ERRDISMPHWICISTTCHDT 146
P + V ++ ++HW V Y + D + T +
Sbjct: 20 EAPTE-VGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANR-VQVTSQEY 74
Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
+ ++ L +Y V A N G GPP + I+A + G
Sbjct: 75 SARLENLLPDTQYFIEVGACNSAGCGPPSD---MIEAFTKKASGPSSG 119
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 47.1 bits (111), Expect = 3e-06
Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 13/182 (7%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
K E+ V + + + C+ T C +P + L+ S + E +
Sbjct: 1 KVFEVHVRPKKLAVEPKGSLEVNCS-TTCNQPEVGGLETS------LNKILLDEQAQWKH 53
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI 410
+ S C G +S + + + P+ + K + ++
Sbjct: 54 YLVSNIS-HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRV 112
Query: 411 PFTGYPKPKIT--WYRDNEVIESGGHFHVETSERHAILTIRD-ASNVDT-APYRVVAEND 466
P T P +T +R NE + + + A T A D + +A D
Sbjct: 113 P-TVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD 171
Query: 467 LG 468
L
Sbjct: 172 LM 173
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 46.6 bits (109), Expect = 1e-05
Identities = 43/308 (13%), Positives = 81/308 (26%), Gaps = 56/308 (18%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINS 354
+V L C + I+W S E+ S + TL I
Sbjct: 10 VVELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSSEVLGSGK----------TLTIQV 57
Query: 355 VYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG 414
DA +Y C G + L+++ + + + ++
Sbjct: 58 KEFGDAGQYTCHK----GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKN 113
Query: 415 YPKPKITWYRDNE------------------------VIESGGHFHVETSERHAILTIRD 450
Y W+ S + E + ++
Sbjct: 114 YSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQE 173
Query: 451 ASNVDTA------PYRVVAENDLGMDSAIVKIQISD--RPDPPQFPTVEDI-GHDSLALV 501
S A V A + L + I D +PDPP+ ++ + + +
Sbjct: 174 DSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVS 233
Query: 502 WRAPI-WDGGSNITN--YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAEN 558
W P W + + + V+ + T T+ + V A++
Sbjct: 234 WEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTS---ATVICRKNASISVRAQD 290
Query: 559 VYGRSDPS 566
Y S S
Sbjct: 291 RYYSSSWS 298
Score = 41.3 bits (95), Expect = 6e-04
Identities = 38/285 (13%), Positives = 69/285 (24%), Gaps = 45/285 (15%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
+ ++ T + VL + I+ DAG YT + S S
Sbjct: 30 TPEEDGITWTLDQSSE---------VLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLL 80
Query: 81 FT------------INITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
+ P ++ T W
Sbjct: 81 LLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGS 140
Query: 129 RD---ISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKS 185
D ++ + + E QE A + ++ ++ +K +
Sbjct: 141 SDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQ 200
Query: 186 P--------YDKPSPPGIPVVTQVGGDF-VNLSWDKPLDDGGSRIQGYWIDKHEV----- 231
KP PP + + V +SW+ P D S Y+ V
Sbjct: 201 YTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYP--DTWSTPHSYFSLTFCVQVQGK 258
Query: 232 GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
+ + +I + V AQ+ S S
Sbjct: 259 SKREKKDRV-----FTDKTSATVICRKNASISVRAQDRYYSSSWS 298
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 44.9 bits (106), Expect = 2e-05
Identities = 23/191 (12%), Positives = 53/191 (27%), Gaps = 40/191 (20%)
Query: 303 NAIQNHNAQFQCTITGCPKP-TISWLKGSRE-------------ITPSARHHIFAEGDTY 348
NAI N ++WL + + + + +
Sbjct: 10 NAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG 69
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MTAPKFNVPPRFRDTAYFDKGEN 405
L I +V D +Y R +++ + + + ++ P + N
Sbjct: 70 ALRIYNVSKEDRGDYYMRMLHETEDQWK-ITMEVYEMVSKPMIYW-----------ECSN 117
Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
+ ++ Y+ E + S T+ AP++ A N
Sbjct: 118 ATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVN 166
Query: 466 DLGMDSAIVKI 476
+ +S + +
Sbjct: 167 RVSQESEMEVV 177
Score = 37.6 bits (87), Expect = 0.004
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 8 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK--FTVLDDYIIIFIKEIRKEDAGD 65
P ++ + +Q + + NG+ + FK + + I + KED GD
Sbjct: 25 PLASYQRLTWLHTTNQKI-LEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGD 83
Query: 66 YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP 113
Y + + + + T+ + + P+ + S T TC +
Sbjct: 84 YYMRMLHETED-QWKITMEVYEMVSKPMIYWECSNATL-TCEVLEGTD 129
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 44.6 bits (105), Expect = 2e-05
Identities = 27/192 (14%), Positives = 51/192 (26%), Gaps = 28/192 (14%)
Query: 303 NAIQNHNAQFQCTITGCPKPT-ISWLKGSREI---------------TPSARHHIFAEGD 346
N I + K I+WL + T +
Sbjct: 9 NGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ 68
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV 406
+Y+L ++++ D Y + K K + L I+ + N+ + + +
Sbjct: 69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLR-NIQVTNHSQLFQNMTCEL 127
Query: 407 VVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
+ W + S + V R + Y +AEN
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRIS----------SEQDYTCIAEN 177
Query: 466 DLGMDSAIVKIQ 477
+ S V Q
Sbjct: 178 AVSNLSFSVSAQ 189
Score = 34.2 bits (78), Expect = 0.057
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 30 TKNGRVVQSDDRFK--FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITG 87
TK+ + ++ + Y + + ++ ED G Y +S + + ++T+ I
Sbjct: 48 TKSPEIHVTNPKQGKRLNFTQSYSLQ-LSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR 106
Query: 88 LPGPPIGPLDVSEITKHTCTLHW 110
TC LH
Sbjct: 107 QLRNIQVTNHSQLFQNMTCELHL 129
Score = 27.6 bits (61), Expect = 10.0
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 10/64 (15%)
Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
D + G + S + + R DYT N+ ++S +
Sbjct: 136 ADDNVSFRWEALGNTLSSQPN----------LTVSWDPRISSEQDYTCIAENAVSNLSFS 185
Query: 81 FTIN 84
+
Sbjct: 186 VSAQ 189
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 42.2 bits (99), Expect = 4e-05
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 198 VTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD----AWQRVNVAICAPSQINIPN 253
+ V ++W IQGY + + +WQ ++ + + N
Sbjct: 24 PVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81
Query: 254 LIEGRQYEFRVYAQNEAGLSLPSSA 278
L +G YE +V + S +
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSES 106
Score = 41.4 bits (97), Expect = 8e-05
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 8/91 (8%)
Query: 490 VEDIGHDSLALVWRAPIWDGGSNITNYIVEKRE----HPMSSWIR--VGNTRFTTMAITG 543
+ ++ + W I Y V R+ SSW + +
Sbjct: 24 PVVLTPTTVQVTWTVD--RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81
Query: 544 LSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
L G YE +V + S + + TT
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVRTT 112
Score = 41.0 bits (96), Expect = 1e-04
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 5/92 (5%)
Query: 87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDG---GLKVTHYVVERRDISMPHWICIS-TT 142
L + + +T T + W + G +V Y + W +
Sbjct: 13 ELGDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRV-MYRQTSGLQATSSWQNLDAKV 71
Query: 143 CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
+ + ++ L +G Y V G
Sbjct: 72 PTERSAVLVNLKKGVTYEIKVRPYFNEFQGMD 103
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 43.4 bits (101), Expect = 8e-05
Identities = 21/185 (11%), Positives = 43/185 (23%), Gaps = 16/185 (8%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGDTYT 349
K ++ P + Q C + ++ W ++ + ++
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLD-----TSLGAVQSDTGRSV 60
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 409
L + + A VC G +L++ P A V
Sbjct: 61 LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPN---QLTVSPAALVPGDPEVACT 117
Query: 410 IPFTGYPKP----KITWYRDNEVIESGGHFHVET-SERHAILTIRDASNVDTAPYRVVA- 463
P + + +E E E D T +R+
Sbjct: 118 AH-KVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPL 176
Query: 464 ENDLG 468
+
Sbjct: 177 GTPVP 181
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 39.8 bits (92), Expect = 2e-04
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 484 PPQFPTVEDIGH--DSLALVWRAPIWDGGSNITNYIVE-KREHPMSSWIRVG-NTRFTTM 539
P + + +S + W AP S+I+ YI+ + ++ + W +
Sbjct: 7 GPVEVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHLNSY 63
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
I GL PG YE ++ + YG + T D TT
Sbjct: 64 TIKGLKPGVVYEGQLISIQQYGHQE-VTRFDFTTT 97
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 39.7 bits (92), Expect = 4e-04
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 482 PDPPQFPTVEDIGHDSLALV-WRAPIWD-----GGSNITNYIVEKREHPMSSWIRVGNTR 535
P PPQ TV+ + V WR P+ G+N+T Y V + ++ I
Sbjct: 18 PAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFP-TAD 76
Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
T + + L V + G S S
Sbjct: 77 STAVELVRLRSLEAKGVTVRTLSAQGESVDS 107
Score = 38.2 bits (88), Expect = 0.002
Identities = 27/126 (21%), Positives = 37/126 (29%), Gaps = 10/126 (7%)
Query: 73 SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYD-----GGLKVTHYVVE 127
SSGS F+ G P PP + +T T + W PP G VT Y V
Sbjct: 2 SSGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVY 61
Query: 128 RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
+ + I T T + L + V ++ G
Sbjct: 62 AKGQRVAEV--IFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSA---VAAVPPEL 116
Query: 188 DKPSPP 193
P P
Sbjct: 117 LVPPTP 122
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 40.9 bits (95), Expect = 5e-04
Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 22/148 (14%)
Query: 66 YTVNLSNSSGSVS---GTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP----KYDGG 118
++V +++ SG S G+F + + P PP DV+ + W +
Sbjct: 75 FSVQITDQSGQYSQECGSFLLAESIKPAPP---FDVTVTFSGQYQISWRSDYEDPAFYML 131
Query: 119 LKVTHYVVERRDIS-----MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP 173
Y ++ R+ P IS + + + Y V A G
Sbjct: 132 KGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSS- 190
Query: 174 PLEGI-----NPIKAKSPYDKPSPPGIP 196
+G +P+ ++ ++
Sbjct: 191 -YQGTWSEWSDPVIFQTQSEELKEHHHH 217
Score = 40.9 bits (95), Expect = 5e-04
Identities = 31/193 (16%), Positives = 53/193 (27%), Gaps = 23/193 (11%)
Query: 97 DVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEG 156
++ + T TL W + + T + R + H TCH V
Sbjct: 19 EMWNLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATY---TCH---MDVFHFMAD 72
Query: 157 QEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDD 216
+ + + KP+PP VT G +SW +D
Sbjct: 73 DIFSVQIT-DQSGQYSQECGSFLLAE----SIKPAPPFDVTVTFSGQ--YQISWRSDYED 125
Query: 217 GGSRIQGYWIDKHEV----GSDAWQRVNVAICAPSQ-----INIPNLIEGRQYEFRVYAQ 267
+ + ++E+ D W + + YE +V A
Sbjct: 126 PAFYMLKGKL-QYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAG 184
Query: 268 NEAGLSLPSSASN 280
G S + S
Sbjct: 185 PMPGSSYQGTWSE 197
Score = 38.2 bits (88), Expect = 0.003
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 11/124 (8%)
Query: 458 PYRVVAENDLG-MDSAIVKIQISD--RPDPPQFPTVEDIGHDSL--ALVWRAPIWDGGSN 512
+ V + G +++ +P PP TV G + + P +
Sbjct: 74 IFSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVTFSGQYQISWRSDYEDPAFYMLKG 133
Query: 513 ITNYIVEKREHPMSSWIRV------GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
Y ++ R + ++R ++ YE +V A + G S
Sbjct: 134 KLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQG 193
Query: 567 TTSD 570
T S+
Sbjct: 194 TWSE 197
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 40.1 bits (93), Expect = 6e-04
Identities = 29/190 (15%), Positives = 66/190 (34%), Gaps = 17/190 (8%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
+ V + + C+ T C +P + ++ TP + + G+ +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCS-TSCDQPKLLGIE-----TPLPKKELLLPGNNRKVYEL 54
Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK--IP 411
S D+ + +C + G + K L + P+ V + G+ + ++ +
Sbjct: 55 SNVQEDS-QPMCYSNCPDGQSTAKTFLTVYWTPE-RVELAPLPSWQP-VGKQLTLRCQVE 111
Query: 412 FTGYPKPKIT--WYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
G P+ ++T R + ++ E +E + +R + A + E DL
Sbjct: 112 -GGAPRAQLTVVLLRGEKELKREP-AVGEPAEVTTTVLVR--RDHHGAQFSCRTELDLRP 167
Query: 470 DSAIVKIQIS 479
+ S
Sbjct: 168 QGLELFENTS 177
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 39.1 bits (90), Expect = 0.001
Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 12/118 (10%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNV-DTAPYRV 461
G +V + P + W ++ + + H L ++D S V D+ Y
Sbjct: 14 GTSVELTCPL--DSDENLKWEKNGQELPQKHDKH---------LVLQDFSEVEDSGYYVC 62
Query: 462 VAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE 519
+K ++ D + +D A + + +
Sbjct: 63 YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSR 120
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 37.6 bits (86), Expect = 0.002
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 18/105 (17%)
Query: 86 TGLPGPPIGPLDVSEITKHTCTLH--WNPPKYDGG--LKVTHYVVERRDISMPHWICIST 141
+ P P V I+K+ +H W PP G L+ + Y+ R + +
Sbjct: 2 SSGSSGPGAPSTVR-ISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVF 60
Query: 142 TC----HDTTFIVQGL---------TEGQEYLFHVMAVNENGMGP 173
T+ V T +F + A NE G GP
Sbjct: 61 MRIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGP 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.003
Identities = 90/539 (16%), Positives = 149/539 (27%), Gaps = 204/539 (37%)
Query: 15 VKIFYAGDQPMEVSLTKNG-----RVVQSDD-RFKFTVL------DDYIIIFIKEIRKED 62
+K + + K R V + + + DDY F +E+R
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-VAIFGGQGNTDDY---F-EELRD-- 175
Query: 63 AGDYTVNLSNSSGSVSGTFTINITG-LPGPPIGPLDVSEITKHTCTLH-W--NP---PKY 115
L + + G L LD ++ + W NP P
Sbjct: 176 -------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 116 DGGLKVTHYVVERRDISMPHWICISTTCH-DTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
D Y++ IS P I + H T + G T G+ L + G
Sbjct: 229 D-------YLLSIP-ISCP-LIGVIQLAHYVVTAKLLGFTPGE--LRSYLK----GATGH 273
Query: 175 LEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQG-YWIDKHEVGS 233
+G+ + A V SW+ I ++I G
Sbjct: 274 SQGL--VTA-------------VAIAETD-----SWESFFVSVRKAITVLFFI-----GV 308
Query: 234 DAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA--- 290
++ P+ P+++E +N G+ PS PM +
Sbjct: 309 RCYE------AYPNTSLPPSILED-------SLENNEGV--PS----------PMLSISN 343
Query: 291 -KAPEIIVPLRNANA---------IQNHNAQFQCTITGCPKPTISWLKG----------- 329
++ + N+ I N ++G P S L G
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG---PPQS-LYGLNLTLRKAKAP 399
Query: 330 -----SREITP-SAR----HHIFAEGDTYTLII----NSVYGVDADEYVCRAVNKGGVKS 375
SR P S R + F L + +S V A + + + + K V
Sbjct: 400 SGLDQSR--IPFSERKLKFSNRF-------LPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 376 TKAELIIMTAPKFNVPPRFRDTAYFDKGENV----------VVKIPFTGYPKPKITWYRD 425
++ I P + DT FD G ++ +V P + W
Sbjct: 451 NAKDIQI---PVY-------DT--FD-GSDLRVLSGSISERIVDCIIR---LP-VKW--- 490
Query: 426 NEVIESGGHFHV------ETSERHAILTIR----------DASNVDTAPYRVVAENDLG 468
E H+ S +LT R A +D P ++D G
Sbjct: 491 -ETTTQFKATHILDFGPGGAS-GLGVLTHRNKDGTGVRVIVAGTLDINP-----DDDYG 542
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.004
Identities = 41/353 (11%), Positives = 97/353 (27%), Gaps = 96/353 (27%)
Query: 248 QINIPNLIEGRQYEFRVYAQNEAG-LSLPSSASNSVQIKDPMAAKAPEIIVPLRNA-NAI 305
+IN L+ + E R + + N Q+ + + LR A +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
+ + G K +W+ +Y + + + +
Sbjct: 148 RPAKNVLIDGVLGSGK---TWVALD-----VCL--------SYKVQCKMDFKI----F-- 185
Query: 366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT-----------G 414
+N S + L ++ + + P + T+ D N+ ++I
Sbjct: 186 -WLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 415 YPKPKI----TWYRDNEVIESGGHFHVE--TSERHAILTIRDASNVD-----TAPYRVVA 463
Y + + + + F++ +LT R D T + +
Sbjct: 243 YENCLLVLLNVQ--NAKAWNA---FNLSCKI-----LLTTRFKQVTDFLSAATTTHISLD 292
Query: 464 ENDLGMD--------SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN 515
+ + + + + D P + V L+++
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQD--LPRE---VLTTNPRRLSIIAE------------ 335
Query: 516 YIVEKREHPMSS--WIRVGNTRFTT---MAITGLSPG---HQYE-FRVYAENV 559
R+ + W V + TT ++ L P ++ V+ +
Sbjct: 336 ---SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Score = 33.7 bits (76), Expect = 0.20
Identities = 44/298 (14%), Positives = 76/298 (25%), Gaps = 97/298 (32%)
Query: 339 HHIFAEGDTYTLIINSVYGVDADEYV----CRAVN---KGGVKSTKAELIIMTAPKFNVP 391
HH+ E + + V D +V C+ V K + + + II
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII------MSK 58
Query: 392 PRFRDTAYF-----DKGENVVVKIPFTG------Y-------------PKPKITWY---- 423
T K E +V K F Y P Y
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 424 ----RDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVAENDLGMDSAIVKIQI 478
DN+V ++V S L +R A + A ++ G+ +
Sbjct: 117 DRLYNDNQVFAK---YNV--SRLQPYLKLRQALLELRPAKNVLID----GVLGS------ 161
Query: 479 SDRPDPPQFPTVEDIGHDSLAL-VWRAPIWDGGSNITNYIVEKREHPMSS---WIRVGNT 534
G +AL V + K + M W+ + N
Sbjct: 162 ---------------GKTWVALDVCLS--------------YKVQCKMDFKIFWLNLKNC 192
Query: 535 RFTTMAITGLSP-GHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISLITL 591
+ L +Q + + + + + + LL L+ L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 38.6 bits (88), Expect = 0.006
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
R A+ +C+ + W + + + + L+I ++ D
Sbjct: 541 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKN--LLIFNLSEGD 597
Query: 360 ADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDT 397
+ Y C + T +++ + V P+
Sbjct: 598 SGVYQCLSEE-RVKNKTVFQVVAKHVLEVKVVPKPVVA 634
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 37.5 bits (86), Expect = 0.006
Identities = 21/177 (11%), Positives = 42/177 (23%), Gaps = 15/177 (8%)
Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGD----TYTLIINSVYGVDADEYVCRA 367
F+ ++ R + P + GD +L I D Y R
Sbjct: 42 FRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRV 101
Query: 368 VNKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENV----VVKIPFTGYPKPKITW 422
VK S + + + P + G + P +W
Sbjct: 102 ERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSW 161
Query: 423 YRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
+ + R + LT+ + + +Q++
Sbjct: 162 TGNALSPLDP------ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 36.9 bits (84), Expect = 0.018
Identities = 11/72 (15%), Positives = 16/72 (22%), Gaps = 4/72 (5%)
Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
+ + N C + T SW H L I ++
Sbjct: 508 QKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCI---LFIENLTAQQ 563
Query: 360 ADEYVCRAVNKG 371
Y C A
Sbjct: 564 YGHYFCEAQEGS 575
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 34.0 bits (77), Expect = 0.031
Identities = 7/57 (12%), Positives = 13/57 (22%)
Query: 320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST 376
P I W + I + + + + YVC +
Sbjct: 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 88
Score = 29.7 bits (66), Expect = 0.89
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY 459
G V++ P YP +I W +++ I S+ L++++ S ++ + Y
Sbjct: 21 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDH-LSLKEFSELEQSGY 74
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85,
glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A
{Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Length = 626
Score = 34.4 bits (78), Expect = 0.13
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 7/115 (6%)
Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
+ + I ++ + + P P V +D + +W+ SN+ +Y V
Sbjct: 509 FAAEGNETGLAEFYIGQLAVGADSEKPAAPNVNVRQYDPDPSGIQL-VWEKQSNVHHYRV 567
Query: 519 EKREHPMSSWIRVGNTRFTTMAITGLSP---GHQYEFRVYAENVYG-RSDPSTTS 569
K I G + + + GL + + A + SD
Sbjct: 568 YKETKHGKELI--GTSAGDRIYLEGLVEESKQNDVRLHIEALSETFVPSDARMID 620
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 33.3 bits (76), Expect = 0.23
Identities = 36/232 (15%), Positives = 67/232 (28%), Gaps = 34/232 (14%)
Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITG-CPKP-TISWLKGSREITPSARHHIFAEGDT 347
K P + ++ + A C + P+P T+SW G+ +
Sbjct: 130 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGL 189
Query: 348 YTL---IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGE 404
Y+L + + Y+C +K + + K + P G
Sbjct: 190 YSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLG-GP 248
Query: 405 NVVVKIP-----------------FTGY-PKP---KITWYRDNEVIESGGHFHVE----- 438
+V + P + K WY D + + E
Sbjct: 249 SVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNS 308
Query: 439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTV 490
T ++LT+ ++ Y+ N A ++ IS P+ P V
Sbjct: 309 TYRVVSVLTVLHQDWLNGKEYKCKVSN--KALPAPIEKTISKAKGQPREPQV 358
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 32.7 bits (74), Expect = 0.24
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
+L + + +A EY C V +L ++ +P + D + E+
Sbjct: 82 ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLL---DQVGMKENEDKY 138
Query: 408 VKIPFTGYPKP-KITWYRDNEVIESGGHFH--VETSE 441
+ YP+ ITW + + V T
Sbjct: 139 MCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGP 175
Score = 28.5 bits (63), Expect = 5.9
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 55 IKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKH---TCTLH 109
+ I+ E+AG+Y + + GT + + P + V C
Sbjct: 86 LPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESS 143
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 30.4 bits (69), Expect = 0.45
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 413 TGYPKPKITWYR------DNEVIESGGHF--HVETSERHAILTIRDASNVDTAPYR 460
Y WYR + E I GG + V + + L I D + D YR
Sbjct: 27 ASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR 82
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 30.5 bits (68), Expect = 0.49
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 35 VVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTFTINI 85
V D + F D + IK + +D+G Y + ++N+ G V + F + I
Sbjct: 61 NVSFSDIYGFDYGD--FALSIKSAKLQDSGHYLLEITNTGGKVCNKNFQLLI 110
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 32.3 bits (74), Expect = 0.53
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 528 WIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
W + ++R + + L G Y+F V A N G+ +P T+
Sbjct: 737 WYYLTDSRTVS--YSNLPQGT-YQFLVKAANSDGKWNPIPTA 775
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix,
dynamic fluctuations, conformational exchange, chaps,
cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 89
Score = 29.7 bits (66), Expect = 0.58
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 511 SNITNYIVEKR-EHPMSSW--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST 567
S+I+ YI+ R ++ + W + + I GL PG YE ++ + YG + T
Sbjct: 10 SHISKYILRWRPKNSVGRWKEATIPGHL-NSYTIKGLKPGVVYEGQLISIQQYGHQE-VT 67
Query: 568 TSDLITTYGEL 578
D TT
Sbjct: 68 RFDFTTTSTST 78
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 31.9 bits (73), Expect = 0.60
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 528 WIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
W + T + PG YEF V A TTS
Sbjct: 731 WYTINEQNSVT--FRNIPPGK-YEFLVKARLHNQDWSEDTTS 769
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 30.3 bits (68), Expect = 0.62
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 55 IKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86
I +++KED Y + + +G+ + I +
Sbjct: 77 ISKVQKEDNSTYIMRVLKKTGNEQ-EWKIKLQ 107
Score = 28.7 bits (64), Expect = 2.0
Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 13/93 (13%)
Query: 298 PLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSRE------------ITPSARHHIFAE 344
L + + N + + ++W + + + +
Sbjct: 10 HLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD 69
Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 377
+ L I+ V D Y+ R + K G +
Sbjct: 70 PQSGALYISKVQKEDNSTYIMRVLKKTGNEQEW 102
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 29.9 bits (67), Expect = 0.77
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 22 DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT--VNLSNSSGSVSG 79
DQ + + G + + + + ++ + D G+Y + + G+ +G
Sbjct: 43 DQLLAICNADLGWHISPSFKDRVAPGPGLGLT-LQSLTVNDTGEYFCIYH-TYPDGTYTG 100
Query: 80 TFTINITGLPGPPIGP 95
+ + G
Sbjct: 101 RIFLEVLESSVAEHGA 116
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 29.9 bits (67), Expect = 0.88
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 55 IKEIRKEDAGDYT--VNLSNSSGSVSGTFTINI 85
I ++R EDAGDY +N + + + + I
Sbjct: 76 ISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.4 bits (66), Expect = 1.1
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 55 IKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86
I +RKED G Y + + + + I +
Sbjct: 77 ISNVRKEDKGTYYMRVLRETEN---ELKITLE 105
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 29.6 bits (66), Expect = 1.2
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 6 YIPEGDNTKVKIFYA--GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDA 63
Y PEG + IF+ G ++ T R+ ++ I I + D
Sbjct: 39 YQPEGGRDAISIFHYAKGQPYIDEVGTFKERI-----QWVGDPSWKDGSIVIHNLDYSDN 93
Query: 64 GDYTVNLSNSSGSVSGTFTINITGLPGPP 92
G +T ++ N V T + + P
Sbjct: 94 GTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
Score = 26.9 bits (59), Expect = 9.1
Identities = 14/125 (11%), Positives = 34/125 (27%), Gaps = 28/125 (22%)
Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPKP----TISWLKGSREITPSARHHIFAEGDTY-- 348
++ R C+ + +W + +A+G Y
Sbjct: 2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 61
Query: 349 --------------------TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 388
+++I+++ D + C N + +++ + K
Sbjct: 62 EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK- 120
Query: 389 NVPPR 393
VP R
Sbjct: 121 -VPTR 124
>2kzw_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI-2, protein structure initiative;
NMR {Methanosarcina mazei}
Length = 145
Score = 29.5 bits (66), Expect = 1.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 62 DAGDYTVNL--SNSSGSVSGTFTINIT 86
+ G+Y V+L SN + S S + TI
Sbjct: 112 NEGEYIVSLIVSNENDSDSASVTIRAL 138
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 28.6 bits (63), Expect = 2.6
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 61 EDAGDYTVNL--SNSSGSVSGTFTINITG 87
E G Y V++ N++G + ++G
Sbjct: 91 ESPGIYRVSVRAENTAGHDEAVLFVQVSG 119
>1w9s_A BH0236 protein, BHCBM6; carbohydrate-binding module, lectin,
beta-glucan, carbohydrate binding, glycoside hydrolase;
1.59A {Bacillus halodurans} SCOP: b.18.1.10 PDB:
1w9t_A* 1w9w_A*
Length = 142
Score = 28.7 bits (64), Expect = 3.1
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 63 AGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDV 98
++ + +S + G I G +G + V
Sbjct: 58 RDASSIEVRVASDTPGGRIEIRTGSPTGTLLGDVQV 93
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 29.5 bits (66), Expect = 3.5
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 15/73 (20%)
Query: 429 IESGGHFHVETSER--HAILTIRDASNVD---TAPY--RVVAEN------DLGMDSAIVK 475
+ GG F++ T ILT A +D Y ++ EN L +A V
Sbjct: 418 VNEGGFFNITTDPESNQGILTT--AKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVT 475
Query: 476 IQISDRPDPPQFP 488
+ + D + P F
Sbjct: 476 VTVEDVNEAPFFV 488
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 29.6 bits (67), Expect = 3.7
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 429 IESGGHFHVETSER--HAILTIRDASNVD---TAPY--RVVAEN------DLGMDSAIVK 475
+ GG F++ T ILT +D Y ++ EN L +A V
Sbjct: 269 VNEGGFFNITTDPESNQGILTTAKG--LDFELRKQYVLQITVENAEPFSVPLPTSTATVT 326
Query: 476 IQISDRPDPPQFP 488
+ + D + P F
Sbjct: 327 VTVEDVNEAPFFV 339
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 29.5 bits (67), Expect = 4.1
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 410 IPFTGYPKPKITWYRDNE 427
P K+ W ++ +
Sbjct: 127 PMHPMAPIYKLLWLKNKK 144
>2v4v_A GH59 galactosidase; hydrolase, family 6 carbohydrate binding
module, CCCBM6; HET: XYP; 1.50A {Clostridium
cellulolyticum}
Length = 129
Score = 28.2 bits (63), Expect = 4.2
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 63 AGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDV 98
G +S + G I + G IG V
Sbjct: 48 DGVGGFQARVASATSGGNIEIRLDSSTGTLIGTCPV 83
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 27.9 bits (62), Expect = 4.2
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 28/118 (23%)
Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKP----TISWLKGSREITPSARHHIFAEGDTY- 348
I P + A C T P+ I WL + + I GD
Sbjct: 7 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIY 66
Query: 349 -----------------------TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
++ + ++ D Y C+ GV + K L+++
Sbjct: 67 DDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 29.2 bits (64), Expect = 4.5
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
T + V Y+ EL + PK ++ P A + ++
Sbjct: 255 TFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELL 314
Query: 409 KIPFTGYPKP--KITWYRDNE 427
+ YP ++ W
Sbjct: 315 CLVSHFYPSGGLEVEWELRGG 335
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 29.1 bits (65), Expect = 4.7
Identities = 37/237 (15%), Positives = 65/237 (27%), Gaps = 42/237 (17%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITG-CPKP-TISWLKGSREITPSARHHIFAE-- 344
AP + + C + G P+P T++W GS S H A
Sbjct: 120 KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL---SSGVHTFPAVLQ 176
Query: 345 GDTYTLIINSVYGVDA-----DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAY 399
D YTL S V + C + ++ PP
Sbjct: 177 SDLYTLS--SSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPN 234
Query: 400 FDKGENVVVKIP-----------------FTGY----PKPKITWYRDNEVIESGGHFHVE 438
G +V + P P +I+W+ +N + +
Sbjct: 235 LLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHR 294
Query: 439 -----TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTV 490
T + L I+ + ++ + + A ++ IS + P V
Sbjct: 295 EDYNSTLRVVSALPIQHQDWMSGKEFK--CKVNNKDLPAPIERTISKPKGSVRAPQV 349
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 28.9 bits (65), Expect = 4.9
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 410 IPFTGYPKPKITWYRDNE 427
P Y K+ W +NE
Sbjct: 137 SPVASYTLTKVAWVAENE 154
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 28.8 bits (65), Expect = 6.0
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 34/126 (26%)
Query: 391 PPRFRDTAYF-----DKGENVVVKI-------PFTGYPKPKITWYRDNEVIESGGHFHVE 438
PP F ++ ++ + +V + P T + G F +
Sbjct: 220 PPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDP----TGRFAIL 275
Query: 439 TSER--HAILTIRDASNVD---TAPY--RVVAENDLG---------MDSAIVKIQISDRP 482
T ++T+ +D + V AEN + +A V + + D
Sbjct: 276 TDPNSNDGLVTV--VKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVN 333
Query: 483 DPPQFP 488
+ P F
Sbjct: 334 ENPYFA 339
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 28.8 bits (65), Expect = 6.0
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 410 IPFTGYPKPKITWYRDNE 427
PK+ ++R +
Sbjct: 130 PMTAASILPKLVFWRASF 147
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 27.2 bits (60), Expect = 6.0
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 313 QCTITGCPKPTISWLKGSREITPSARHHIF---AEGDTYTLIINSVYGVDADEYVCRAVN 369
C + C + + + S+R+ + +GD +LII +V D Y CR
Sbjct: 35 FCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGD-VSLIIKNVTLDDHGTYCCRIQF 93
Query: 370 KGGVKSTKAEL 380
G + K EL
Sbjct: 94 PGLMNDKKLEL 104
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 28.8 bits (64), Expect = 6.2
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 27/120 (22%)
Query: 467 LGMDSAIVKIQISDRPDPPQFPTVEDIGHD--SLALVWRAPIWDGGSNITNYIV------ 518
L + + + S D PQ V + +D S+ LVW+AP + I +Y +
Sbjct: 20 LMVGTPMAMAAKSSSLDAPQQLQVPTLAYDESSIVLVWKAP--EDTRKIVDYQIFSAGKL 77
Query: 519 -------EKREHPMSSWIR----------VGNTRFTTMAITGLSPGHQYEFRVYAENVYG 561
P +I + GL P Y+F V A+ G
Sbjct: 78 LGKASDNNDNFSPAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADG 137
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 27.3 bits (61), Expect = 6.4
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 422 WYR------DNEVIESGGHF--HVETSERHAILTIRDASNVDTAPYR 460
WYR + + I GG + V+ + L I D D+ Y+
Sbjct: 36 WYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYK 82
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 28.7 bits (65), Expect = 6.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 410 IPFTGYPKPKITWYRDNE 427
+ G+ PK+ W + +E
Sbjct: 122 LMMPGFTAPKLLWVQRHE 139
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 28.3 bits (64), Expect = 7.0
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 410 IPFTGYPKPKITWYRDNE 427
K+ W +E
Sbjct: 133 GVTQQLVTAKLRWIERHE 150
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 27.7 bits (62), Expect = 8.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPS 566
A+ G G +++ V A + YG+ D +
Sbjct: 48 ALEGHEVGDKFDVAVGANDAYGQYDEN 74
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein,
chaperone; 1.95A {Methanocaldococcus jannaschii} PDB:
3pra_A
Length = 157
Score = 27.3 bits (61), Expect = 9.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPS 566
AI + G + E + E +G+ DPS
Sbjct: 60 AILEMDVGEEREVVLPPEKAFGKRDPS 86
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Length = 151
Score = 27.3 bits (61), Expect = 9.8
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPS 566
A+ + G + ++ AE YG +
Sbjct: 61 AVLDMEVGDEKTVKIPAEKAYGNRNEM 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,418,049
Number of extensions: 592362
Number of successful extensions: 3952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2502
Number of HSP's successfully gapped: 1170
Length of query: 591
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 492
Effective length of database: 3,937,614
Effective search space: 1937306088
Effective search space used: 1937306088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.4 bits)