BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12426
(616 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 103/199 (51%), Gaps = 6/199 (3%)
Query: 307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSG 365
+D P PP+ LK +TK+S L W P DGG+ I +Y+VEK + + + +
Sbjct: 3 MDTPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHK 61
Query: 366 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDH 425
T + + L EG Y FRV A N+ G LP + A + RP PG+ T+ D ++
Sbjct: 62 TSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE---RPLPPGKITLMDVTRNS 118
Query: 426 VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIA 485
V L W P+ DGGS I YI+E + K G + A +T ++ L +GEEY FRV A
Sbjct: 119 VSLSWEKPEHDGGSRILGYIVEMQTK-GSDKWATCATVKVTEATITGLIQGEEYSFRVSA 177
Query: 486 VNKGGPGEPSKASAPVTCK 504
N+ G +P + S PV K
Sbjct: 178 QNEKGISDPRQLSVPVIAK 196
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 265 IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD---KGTAKVTVLDIPSPPEGPLKPSN 321
+ + T KV + G S + + +N +G + V + P PP G + +
Sbjct: 55 VATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPP-GKITLMD 113
Query: 322 ITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNF 381
+T++S +L W P DGG+ IL Y+VE + +W V T LI+G +Y+F
Sbjct: 114 VTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSF 173
Query: 382 RVKAVNKIGESLPLVCQSPITAKD 405
RV A N+ G S P P+ AKD
Sbjct: 174 RVSAQNEKGISDPRQLSVPVIAKD 197
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 75/199 (37%), Gaps = 53/199 (26%)
Query: 408 GRPDRPGQPT---VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPAN 464
G D PG P V + K V L W PP DGGS I YI+EK+ +
Sbjct: 1 GAMDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCH 60
Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQE 524
T+ V L+EG Y FRV+A N+ G G P++ + V R
Sbjct: 61 KTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER------------------ 102
Query: 525 YNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNG 584
P P K DV ++ + + W++P +G
Sbjct: 103 --------------------------------PLPPGKITLMDVTRNSVSLSWEKPEHDG 130
Query: 585 GSAIKGYEVERRERTSGRW 603
GS I GY VE + + S +W
Sbjct: 131 GSRILGYIVEMQTKGSDKW 149
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 89 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK----GKCYHLVGTLLKDSI-Y 143
KV L EG Y FRVLA N+ G G P++ TA + +++ GK + T S+ +
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYGIGLPAE-TAESVKASERPLPPGKITLMDVTRNSVSLSW 123
Query: 144 EQLKRSG--------LFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG 195
E+ + G + Q W CA + + + LI+G +Y FRV A N+
Sbjct: 124 EKPEHDGGSRILGYIVEMQTKGSDKWATCATVK--VTEATITGLIQGEEYSFRVSAQNEK 181
Query: 196 GPGEPSDPTAPHIAR 210
G +P + P IA+
Sbjct: 182 GISDPRQLSVPVIAK 196
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 49 WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
WEK G G ++++ W CA + + + LI+G +Y FRV A N+
Sbjct: 123 WEKPEHDGGSRILGYIVEMQTKGSDKWATCATVK--VTEATITGLIQGEEYSFRVSAQNE 180
Query: 109 GGPGEPSDPTAPHIAR 124
G +P + P IA+
Sbjct: 181 KGISDPRQLSVPVIAK 196
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 105/235 (44%), Gaps = 22/235 (9%)
Query: 187 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 246
++V A N+GG S + + K+ + + + G I G+P P
Sbjct: 77 YQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 247 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS--KRGDSGIYTLAVKNSWGTDKGTAKV 304
W I + ++++ T L VF + +R D+G Y + KN +G D+ T ++
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSL-VFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
V D+P PP G +K S++++ S NL W P DGG+ I +Y+VEK RW+ +G
Sbjct: 194 DVADVPDPPRG-VKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR 252
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT 419
T NL Y FRV A NK G S +P P +PT+T
Sbjct: 253 ETRYTVINLFGKTSYQFRVIAENKFGLS----------------KPSEPSEPTIT 291
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 119/305 (39%), Gaps = 40/305 (13%)
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS--TKLKVF 277
+++L ++ VR SN V G P P +W II+ + + K +L +
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67
Query: 278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTV-----LDIPSPPEG--PLKPSNITKSSCNLE 330
D+ +Y + N G+ GTA + V + +P EG + S +
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP 127
Query: 331 WRAPRD-----DGGTDIL----HYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNF 381
+ D G D++ HY V T P G +E D F
Sbjct: 128 FSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG------------VERKDAGF 175
Query: 382 RVK-AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSP 440
V A N+ G D PD P V+D +D V+L WT P DGGS
Sbjct: 176 YVVCAKNRFG------IDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSK 229
Query: 441 ISQYIIEKKPKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
I+ YI+EK W + + A T +V +L Y+FRVIA NK G +PS+ S
Sbjct: 230 ITNYIVEKCATTAERWLR--VGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSE 287
Query: 500 PVTCK 504
P K
Sbjct: 288 PTITK 292
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 528 FITLLFKNFVLDLNEGL------------KSMVKLSYIDNVPGKPSKPEATDVDKDHIKI 575
F +L+F N V + G + V+L D VP P + +DV +D + +
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD-VPDPPRGVKVSDVSRDSVNL 217
Query: 576 KWQQPISNGGSAIKGYEVERRERTSGRWIKI 606
W +P S+GGS I Y VE+ T+ RW+++
Sbjct: 218 TWTEPASDGGSKITNYIVEKCATTAERWLRV 248
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 74 IWEKCAQT--------EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 125
I EKCA T + + V++L Y+FRV+A NK G +PS+P+ P I +
Sbjct: 234 IVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Query: 126 KKGKCYH 132
K + +
Sbjct: 294 DKTRAMN 300
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 160 IWEKCAQT--------EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 211
I EKCA T + + V++L Y+FRV+A NK G +PS+P+ P I +
Sbjct: 234 IVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Query: 212 KKVSPYINRDQ 222
K +N D+
Sbjct: 294 DKTRA-MNYDE 303
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
P+ P P + + + V L W PP DGGS ++ Y IEK+ G C + T T+
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPC-AKSRYTYTT 68
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPV 501
+ L+ G++YEFR+IA NK G +P + +APV
Sbjct: 69 IEGLRAGKQYEFRIIAENKHGQSKPCEPTAPV 100
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
P PP P+ NI + L W+ P DGG+ + +Y +EK + G W P TYT
Sbjct: 10 PEPPRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTT 68
Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPI 401
E L G Y FR+ A NK G+S P +P+
Sbjct: 69 IEGLRAGKQYEFRIIAENKHGQSKPCEPTAPV 100
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
W CA++ + L G QYEFR++A NK G +P +PTAP
Sbjct: 56 WSPCAKSR--YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAP 99
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
W CA++ + L G QYEFR++A NK G +P +PTAP
Sbjct: 56 WSPCAKSR--YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAP 99
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
P P P ++ + + + W+ P +GGS + Y +E+RE G W
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSW 56
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 115/285 (40%), Gaps = 21/285 (7%)
Query: 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYT 288
G+ +V P + W + + + +K+ K + + L++ + D G Y
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 289 LAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE 348
N GT + + D+PS P G +K +++++ + + P GG I HY V+
Sbjct: 175 CTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233
Query: 349 KMDMETGRW-VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGE----SLPLVCQSPITA 403
++ + W + T NL Y RV AVN G+ + + P+
Sbjct: 234 VKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVRE 293
Query: 404 KDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE--KKPKYGPW-EKACI 460
P P GQP+ K + + DGG+PI +YI++ K K W EK
Sbjct: 294 PSP---PSIHGQPSSGKSFKLSIT-----KQDDGGAPILEYIVKYRSKDKEDQWLEKK-- 343
Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
V N + L+ YE ++ A N+ G EP+ + KP
Sbjct: 344 VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKP 388
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 96/276 (34%), Gaps = 40/276 (14%)
Query: 242 GEPIPTKEW--LCNDITIISKD-----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 294
GEPIP W + T D R ++ S+ L + D K DSG Y +
Sbjct: 26 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85
Query: 295 WGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI-------LHYVV 347
G G K LDI P+ I+ + W + D+ +H+
Sbjct: 86 IG---GHQKSMYLDIEYAPKF------ISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136
Query: 348 EKMDMETGRWVPMGDVSGTYTRAENLI------EGHDY-NFRVKAVNKIGESLPLVCQSP 400
+K+ + + TY+ +I +D+ + A N IG Q
Sbjct: 137 DKLVLPAKNTTNLK----TYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF----QEY 188
Query: 401 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI 460
I A P P + + + + + P GG PI Y ++ K K
Sbjct: 189 ILALADV--PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR 246
Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSK 496
T + +L+ YE RV AVN G G+ SK
Sbjct: 247 SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK 282
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 553 IDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIR 612
+ +VP P + ++ + K+ + +P S+GG I Y+V+ +E S W + ++
Sbjct: 192 LADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ 251
Query: 613 T 613
T
Sbjct: 252 T 252
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDS 284
D KVRAG + E V G T W+ I + K+ N + +KL + +++
Sbjct: 16 DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHC 75
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG-PLKPSN 321
G YTL V+N G+ + +TV+D P PP G P PS+
Sbjct: 76 GCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPSGPSS 113
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKR 281
SDI + G GEP P W C I S++ RF I N D T L + D ++
Sbjct: 13 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK 72
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
D G+YTL++ N +G+D T + + I
Sbjct: 73 QDGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
DI + G L GEP P V W GG ++
Sbjct: 14 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIH 47
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKR 281
SDI + G GEP P W C I S++ RF I N D T L + D ++
Sbjct: 15 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK 74
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
D G+YTL++ N +G+D T + + I
Sbjct: 75 QDGGLYTLSLGNEFGSDSATVNIHIRSI 102
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
DI + G L GEP P V W GG ++
Sbjct: 16 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIH 49
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP-KYGPWEKACIVPANITATS 469
D PG+P + + V L+W P+ GG I+ YI+EK+ G W KA +
Sbjct: 12 DPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 470 VPDLKEGEEYEFRVIAVNKGG----PGEPSKASAPVTCK 504
V L E YEFRVIA N G P EPS A +TC+
Sbjct: 72 VSGLTEDAAYEFRVIAKNAAGAISPPSEPSDA---ITCR 107
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP--MGDVSGTYTR 369
PP P+ P NIT+ + L+W P GG I Y+VEK D+ GRW+ ++
Sbjct: 13 PPGKPV-PLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 370 AENLIEGHDYNFRVKAVNKIGE-SLPLVCQSPITAKD 405
L E Y FRV A N G S P IT +D
Sbjct: 72 VSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRD 108
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 560 PSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIK 605
P KP ++ + + +KW +P GG I Y VE+R+ +GRW+K
Sbjct: 14 PGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLK 59
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 299 KGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM--ETGR 356
G V D+P+PP L+ ++ S L W P DD + I +++E D + G
Sbjct: 6 SGPTPAPVYDVPNPPFD-LELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGL 63
Query: 357 WVPMGDVSGTYTRAE-NLIEGHDYNFRVKAVNKIGESLP 394
W +VSGT T A+ NL +Y+FRV AVN IG+SLP
Sbjct: 64 WHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLP 102
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP---KYGPWEKACIVPA 463
+ P+ P +TD V L WTP D SPI+++IIE + K G W V
Sbjct: 14 YDVPNPPFDLELTDQLDKSVQLSWTP-GDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 464 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
T + +L Y FRV+AVN G PS+AS
Sbjct: 73 TQTTAQL-NLSPYVNYSFRVMAVNSIGKSLPSEAS 106
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 153 DQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK 212
D H +W + G T L+L Y FRV+AVN G PS+ + ++ +A
Sbjct: 56 DAMHKPGLWHHQTEVSG-TQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKAS 114
Query: 213 K 213
+
Sbjct: 115 E 115
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 411 DRPGQPTVTD----WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANIT 466
DRPG P + WG ++V L WTPPK DG + I+ Y I+K K I + T
Sbjct: 16 DRPGPPQIVKIEDVWG-ENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRT 74
Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
+ ++ +L G EY FRV + N G E + +
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMT 106
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD- 362
+ ++D P PP+ +K ++ + L W P+DDG I Y ++K D ++ W + +
Sbjct: 12 IQIIDRPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEH 70
Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIG--ESLPLVCQSPITAKD 405
T L+ G++Y FRV + N G E + +S + A+D
Sbjct: 71 YHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARD 115
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
PG P + DV +++ + W P +G +AI GY +++ ++ S W + RT +
Sbjct: 18 PGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSAT 77
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 88 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCY 131
+ +L+ GN+Y FRV + N G E + T A+ GK Y
Sbjct: 76 ATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIY 119
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
L D V + S +F + GEP PT W + I ++K+ D L++ +
Sbjct: 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLDI 309
DSG+YT VKNS G+ + K+T+ I
Sbjct: 73 DSGLYTCTVKNSAGSVSSSCKLTIKAI 99
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP--KYGPWEKA-CIVPANIT 466
P+ P +PT++ + V + W P + +GG PI + +E K K G W A +P +
Sbjct: 18 PEAPDRPTISTASETSVYVTWIP-RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
+ + L++G Y+FRV A+N G EPS S P
Sbjct: 77 SVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV 113
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 311 SPPEGPLKP--SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME-TGRWVPMGDV---S 364
SPPE P +P S +++S + W PR +GG I + VE ++ G W+ S
Sbjct: 16 SPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPS 74
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSP 400
L +G Y FRV+A+N +GES P P
Sbjct: 75 RLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRP 110
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 89 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI 122
++ L +G Y+FRV A+N G EPS P+ P++
Sbjct: 79 EITGLEKGISYKFRVRALNMLGESEPSAPSRPYV 112
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI 208
++ L +G Y+FRV A+N G EPS P+ P++
Sbjct: 79 EITGLEKGISYKFRVRALNMLGESEPSAPSRPYV 112
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 279
R ++ D+ + G + ++G P+P +W +I ++K+ +D ++ L V
Sbjct: 11 RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTE 70
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS-PPEGPLK 318
++ D G+YT N G + ++K+ + P P PLK
Sbjct: 71 EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLK 110
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
S++ + EF+ V G+P+PT W+ N +I D F+IV + L++ + D
Sbjct: 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG---GSNLRILGVVKSD 376
Query: 284 SGIYTLAVKNSWGTDKGTAKVTV 306
G Y +N G + +A++ V
Sbjct: 377 EGFYQCVAENEAGNAQSSAQLIV 399
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 208 IARAKKV---SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITIISKDR 262
I+R KV P Q I G VIG+P+PT W N D+ I D
Sbjct: 110 ISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDS 169
Query: 263 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTVLDIP 310
+V S L++ + GDSG+Y + +N T G A+V +L P
Sbjct: 170 RVVVL--PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDP 216
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 410 PDRPGQP--TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANIT 466
P P P T++ + ++L WT P DG SP+ +YI+E PW V T
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKAT 76
Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+ +V L Y+FR+ AVN G G+ SK + V+
Sbjct: 77 SVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS 112
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 302 AKVTVLDIPSPPEGPLKP-SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM 360
A + V +P PE P+ S + + + NL W P D G + ++ Y++E M W +
Sbjct: 10 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILE-MSENNAPWTVL 67
Query: 361 ---GDVSGTYTRAENLIEGHDYNFRVKAVNKIGE 391
D T + L+ Y FR+ AVN +G+
Sbjct: 68 LASVDPKATSVTVKGLVPARSYQFRLCAVNDVGK 101
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF--DSKRGD 283
IK++AG +++ IG P PT W D + D KS+ +F +KR D
Sbjct: 12 IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLV--DAKSSTTSIFFPSAKRAD 69
Query: 284 SGIYTLAVKNSWGTDKGTAKVTV 306
SG Y L VKN G D+ +V V
Sbjct: 70 SGNYKLKVKNELGEDEAIFEVIV 92
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTK 273
+P + L D VR G + I V GEP P WL N + + RF + +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
L++ ++RGD+G YT N +G + A++ V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
+SD + GSN + G+P PT WL N + S++R +++ D L+
Sbjct: 300 ISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGD----LRFSKLSLE 355
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTV 306
DSG+Y +N GT +A++ V
Sbjct: 356 DSGMYQCVAENKHGTIYASAELAV 379
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKP--KYGPWEKACIVPANITATSVPDLKEGEEYEFR 482
+ L W PP DGGSPIS Y +E P K P E + + +V L G+ Y FR
Sbjct: 25 EIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPRE---VYQGSEVECTVSSLLPGKTYSFR 81
Query: 483 VIAVNKGGPG 492
+ A NK G G
Sbjct: 82 LRAANKMGFG 91
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 328 NLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVN 387
L W P DGG+ I Y VE +E + S +L+ G Y+FR++A N
Sbjct: 27 QLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAAN 86
Query: 388 KIG 390
K+G
Sbjct: 87 KMG 89
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 4/164 (2%)
Query: 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYT 288
G+ +V P + W + + + +K+ K + + L++ + D G Y
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 289 LAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE 348
N GT + + D+PS P G +K +++++ + + P GG I HY V+
Sbjct: 175 CTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233
Query: 349 KMDMETGRW-VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGE 391
++ + W + T NL Y RV AVN G+
Sbjct: 234 VKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ 277
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 96/276 (34%), Gaps = 40/276 (14%)
Query: 242 GEPIPTKEW--LCNDITIISKD-----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 294
GEPIP W + T D R ++ S+ L + D K DSG Y +
Sbjct: 26 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85
Query: 295 WGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI-------LHYVV 347
G G K LDI P+ I+ + W + D+ +H+
Sbjct: 86 IG---GHQKSMYLDIEYAPKF------ISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136
Query: 348 EKMDMETGRWVPMGDVSGTYTRAENLI------EGHDY-NFRVKAVNKIGESLPLVCQSP 400
+K+ + + TY+ +I +D+ + A N IG Q
Sbjct: 137 DKLVLPAKNTTNLK----TYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF----QEY 188
Query: 401 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI 460
I A P P + + + + + P GG PI Y ++ K K
Sbjct: 189 ILALADV--PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR 246
Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSK 496
T + +L+ YE RV AVN G G+ SK
Sbjct: 247 SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK 282
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 553 IDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIR 612
+ +VP P + ++ + K+ + +P S+GG I Y+V+ +E S W + ++
Sbjct: 192 LADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ 251
Query: 613 T 613
T
Sbjct: 252 T 252
>pdb|1TDQ|A Chain A, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 283
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 287 YTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYV 346
Y +++ GT++ A T L+ + T +S +LEW D+ + Y
Sbjct: 81 YEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEW----DNSEAEAQEYK 136
Query: 347 VEKMDMETGRW----VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 402
V + ++ VP G T T +L+ G +Y + AV +S+P + +
Sbjct: 137 VVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIP----ATMN 192
Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVP 462
A+ D P VT + + L WT K G PI Y I P G VP
Sbjct: 193 ARTEL---DSPRDLMVTASSETSISLIWT--KASG--PIDHYRITFTPSSG-ISSEVTVP 244
Query: 463 ANITATSVPDLKEGEEYEFRVIA 485
+ T+ ++ DL+ G EY + A
Sbjct: 245 RDRTSYTLTDLEPGAEYIISITA 267
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 26/191 (13%)
Query: 316 PLKPSNITK---SSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW------VPMG----- 361
P P N+T+ S L W PR+DG ++ V +M + W +P G
Sbjct: 4 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63
Query: 362 -DVSGTYTRA-ENLIEGHDYNFRVKAV-----NKIGESLPLVCQSPITAKDPFGRPDRPG 414
++ ++T + +L H Y FR+ AV NK + P A DP P+
Sbjct: 64 SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE--- 120
Query: 415 QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP--KYGPWEKACIVPANITATSVPD 472
+ ++ + V L W+ I+ Y +P G + KA I A+ + +
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 473 LKEGEEYEFRV 483
L+ YEF++
Sbjct: 181 LETATMYEFKL 191
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPIS----QYIIEKKPK----------YGPWEKA 458
P P VT + V L W P+ DG PI QY + K K YG +
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63
Query: 459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+ + TA SV DLK Y FR++AV + S SA +P
Sbjct: 64 SELGKSFTA-SVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 109
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 214
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 26/191 (13%)
Query: 316 PLKPSNITK---SSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW------VPMG----- 361
P P N+T+ S L W PR+DG ++ V +M + W +P G
Sbjct: 4 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63
Query: 362 -DVSGTYTRA-ENLIEGHDYNFRVKAV-----NKIGESLPLVCQSPITAKDPFGRPDRPG 414
++ ++T + +L H Y FR+ AV NK + P A DP P+
Sbjct: 64 SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE--- 120
Query: 415 QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP--KYGPWEKACIVPANITATSVPD 472
+ ++ + V L W+ I+ Y +P G + KA I A+ + +
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 473 LKEGEEYEFRV 483
L+ YEF++
Sbjct: 181 LETATMYEFKL 191
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPIS----QYIIEKKPK----------YGPWEKA 458
P P VT + V L W P+ DG PI QY + K K YG +
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63
Query: 459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+ + TA SV DLK Y FR++AV + S SA +P
Sbjct: 64 SELGKSFTA-SVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 109
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 411 DRPGQPTVT--DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WEKACIVPANIT 466
D P P +T D ++ W + D SPI Y I+ + P W+ A N
Sbjct: 4 DVPNAPKLTGITCQADKAEIHWEQ-QGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTD 62
Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
++ V + Y FRVIA NK G PS S T +P
Sbjct: 63 SSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQP 101
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 75/198 (37%), Gaps = 24/198 (12%)
Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRW------V 358
V D+P+ P+ L + W + D + ILHY ++ W V
Sbjct: 2 VQDVPNAPK--LTGITCQADKAEIHWEQ-QGDNRSPILHYTIQFNTSFTPASWDAAYEKV 58
Query: 359 PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD--PFGRPDR-PGQ 415
P D S + +Y FRV A NKIG S P T + PF PD GQ
Sbjct: 59 PNTDSSFVV----QMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQ 114
Query: 416 PTVTDWGKDHVDLEWTP-PKKDGGSPISQYIIEKKPKY--GPWEKACIVPANITATSVPD 472
T +++ + WTP P+ + +P Y + K WE I + D
Sbjct: 115 GT----EPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIAD 170
Query: 473 LKEGEEYEFRVIAVNKGG 490
+Y +V+A+N G
Sbjct: 171 QPTFVKYLIKVVAINDRG 188
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 179 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP-YINRDQLSDIKVRAGSNFEFD 237
+ + N + + A N G G+ + TA + +A+ P ++ R L + VR GS
Sbjct: 70 VTKANSGRYSLKATN--GSGQATS-TAELLVKAETAPPNFVQR--LQSMTVRQGSQVRLQ 124
Query: 238 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
+ V G P P ++ + I S F+I + L + ++ DSG Y++ NS G
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 298 DKGTAKVTV 306
TA++ V
Sbjct: 185 ATSTAELLV 193
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF---KIVNDDKSTKLKVFDS 279
L + V GS F+ ++ G P+P W D +IS +I D KL +
Sbjct: 12 LQSVVVLEGSTATFEAHISGFPVPEVSWF-RDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
+ +SG Y+L N G TA++ V +PP
Sbjct: 71 TKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 179 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP-YINRDQLSDIKVRAGSNFEFD 237
+ + N + + A N G G+ + TA + +A+ P ++ R L + VR GS
Sbjct: 70 VTKANSGRYSLKATN--GSGQATS-TAELLVKAETAPPNFVQR--LQSMTVRQGSQVRLQ 124
Query: 238 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
+ V G P P ++ + I S F+I + L + ++ DSG Y++ NS G
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 298 DKGTAKVTV 306
TA++ V
Sbjct: 185 ATSTAELLV 193
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF---KIVNDDKSTKLKVFDS 279
L + V GS F+ ++ G P+P W D +IS +I D KL +
Sbjct: 12 LQSVVVLEGSTATFEAHISGFPVPEVSWF-RDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
+ +SG Y+L N G TA++ V +PP
Sbjct: 71 TKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE--KKPKYGPWEKACIVPANITA 467
P P +P VTD K+ V L W P G P S YIIE + W+ T
Sbjct: 16 PGPPSKPQVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANH-VKTTL 73
Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
+V L+ Y F V A+N G +PS S PV +
Sbjct: 74 YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 553 IDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVER-RERTSGRWIKI 606
+ ++PG PSKP+ TDV K+ + + W QP + G Y +E + S W +
Sbjct: 12 LSDLPGPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTV 65
>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Mouse Myosin-Binding Protein C, Fast-Type Homolog
Length = 111
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 428 LEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAV 486
L+W PP + G I Y++E + W A P +V DL G FRV+ V
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 487 NKGGPGEPSKASAPVTCK 504
N G EP+ PVT +
Sbjct: 87 NIAGRSEPATLLQPVTIR 104
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 328 NLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYTRAENLIEGHDYNFRVKA 385
L+WR P G I Y+VE + WVP V ++L G FRV
Sbjct: 26 TLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVG 85
Query: 386 VNKIGESLPLVCQSPITAKD 405
VN G S P P+T ++
Sbjct: 86 VNIAGRSEPATLLQPVTIRE 105
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPS---NITKSSCNLEWRAPRDDGGTDILHYVVEKMDM 352
G+ + V P P P+KPS I S + W P+D+GG I YVVE +
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEG 60
Query: 353 ETG-RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL---PLVCQSPITA 403
G +W + + + L G Y RV ++ G+S L+ Q+P +
Sbjct: 61 SNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVS 115
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 410 PDRPG---QPTVTDWGKDH---VDLEWTPPKKDGGSPISQYIIE--KKPKYGPWEKACIV 461
PD+PG +P+V GK H + W PPK +GG+ I++Y++E + WE ++
Sbjct: 15 PDKPGIPVKPSVK--GKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWE---MI 69
Query: 462 PANITATSVPD-LKEGEEYEFRVIAVNKGG 490
+ T + D L G Y RV ++ GG
Sbjct: 70 YSGATREHLCDRLNPGCFYRLRVYCISDGG 99
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 541 NEGLKSMVKLSYIDNVPGKPSKPEATDVDKDH-IKIKWQQPISNGGSAIKGYEVERRERT 599
+ G +V+ + + PG P KP H KI W P NGG+ I Y VE E +
Sbjct: 2 SSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGS 61
Query: 600 SG-RWIKITPDPIR 612
+G +W I R
Sbjct: 62 NGNKWEMIYSGATR 75
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 199 EPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 257
E D +A K V PY + L D++V GS FD V G P P W +D +
Sbjct: 24 ENEDAFLEEVAEEKPHVKPYFTKTIL-DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV 82
Query: 258 ISKDRFKIVNDDK-STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
F+I D++ + L + + D YT NS G TA++ V
Sbjct: 83 KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 37/81 (45%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
+ V G + F + GEP+PT WL + + R ++ + ++ + D G
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEG 83
Query: 286 IYTLAVKNSWGTDKGTAKVTV 306
Y++ V+NS G + +T+
Sbjct: 84 NYSVVVENSEGKQEAEFTLTI 104
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 37/81 (45%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
+ V G + F + GEP+PT WL + + R ++ + ++ + D G
Sbjct: 18 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEG 77
Query: 286 IYTLAVKNSWGTDKGTAKVTV 306
Y++ V+NS G + +T+
Sbjct: 78 NYSVVVENSEGKQEAEFTLTI 98
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 32/183 (17%)
Query: 325 SSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV---SGTYTRAENLIEG----- 376
S+ +++ P GG IL Y E W +G+ S Y E +EG
Sbjct: 22 STAQVQFDEPEATGGVPILKYKAE--------WRAVGEEVWHSKWYDAKEASMEGIVTIV 73
Query: 377 -----HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRP---GQPTVTDWGKDHVDL 428
Y R+ A+N G+ L + + P P P GQ G+D +
Sbjct: 74 GLKPETTYAVRLAALN--GKGLGEISAASEFKTQPVREPSAPKLEGQ-----MGEDGNSI 126
Query: 429 EWTPPKKD-GGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN 487
+ K+D GGSPI Y++ + W+ +P+ + L EYE V+A N
Sbjct: 127 KVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAEN 186
Query: 488 KGG 490
+ G
Sbjct: 187 QQG 189
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 199 EPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 257
E D +A K V PY + L D+ V GS FD V G P P W +D +
Sbjct: 24 ENEDAFLEEVAEEKPHVKPYFTKTIL-DMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPV 82
Query: 258 ISKDRFKIVNDDK-STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
F+I D++ + L + + D YT NS G TA++ V
Sbjct: 83 KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 26/191 (13%)
Query: 320 SNITKSSCNLEWRAPRDD-GGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHD 378
S+IT +S + W APR G I H+ + VP S T T NL G +
Sbjct: 11 SDITANSFTVHWVAPRAPITGYIIRHHAEHSVGRPRQDRVPPSRNSITLT---NLNPGTE 67
Query: 379 YNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT--VTDWGKDHVDLEW---TPP 433
Y + AVN ES PL+ Q + P PT + W V + + T
Sbjct: 68 YVVSIIAVNGREESPPLIGQQATVSDIPRDLEVIASTPTSLLISWEPPAVSVRYYRITYG 127
Query: 434 KKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE 493
+ G SP+ ++ VP + + ++ ++K G +Y + AV G G+
Sbjct: 128 ETGGNSPVQEF---------------TVPGSKSTATINNIKPGADYTITLYAVT--GRGD 170
Query: 494 PSKASAPVTCK 504
+S PV+
Sbjct: 171 SPASSKPVSIN 181
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 32/183 (17%)
Query: 325 SSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV---SGTYTRAENLIEG----- 376
S+ +++ P GG IL Y E W +G+ S Y E +EG
Sbjct: 22 STAQVQFDEPEATGGVPILKYKAE--------WRAVGEEVWHSKWYDAKEASMEGIVTIV 73
Query: 377 -----HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRP---GQPTVTDWGKDHVDL 428
Y R+ A+N G+ L + + P P P GQ G+D +
Sbjct: 74 GLKPETTYAVRLAALN--GKGLGEISAASEFKTQPVREPSAPKLEGQR-----GEDGNSI 126
Query: 429 EWTPPKKD-GGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN 487
+ K+D GGSPI Y++ + W+ +P+ + L EYE V+A N
Sbjct: 127 KVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAEN 186
Query: 488 KGG 490
+ G
Sbjct: 187 QQG 189
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG-D 283
++ + G D V G P P W N T+ S D K++ +K +F+ R D
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASD 73
Query: 284 SGIYTLAVKNSWGTDKGTAKVTVL 307
+G Y KN G T ++ VL
Sbjct: 74 AGAYACVAKNRAGEATFTVQLDVL 97
>pdb|1X5X|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type Iii Domain Containing Protein 3
Length = 109
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
P P +T G + L+W+ P YI+E + + + A +V +
Sbjct: 11 PASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKN 70
Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
L+ +Y+F+VIA N G PS+ TC
Sbjct: 71 LRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC 101
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDS 284
+ ++ G NV G+P P WL N+ + S D + ++ + DS
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Query: 285 GIYTLAVKNSWGTDKGTAKVTVL 307
G Y L VKN +G++ V+V
Sbjct: 292 GKYGLVVKNKYGSETSDFTVSVF 314
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 280
D ++D + GS+ + G+P P WL + + S++R ++ + V +
Sbjct: 299 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLE-- 356
Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTV 306
DSG+Y +N GT +A++TV
Sbjct: 357 --DSGMYQCVAENKHGTVYASAELTV 380
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
++DI V + ++ G P PT WL N ++++DR +I + L +
Sbjct: 302 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLS 357
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVL 307
D+G+Y +N G +A+++V+
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELSVI 382
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDW-RAGGNPL 43
P I+ + + GTT+K + +G PVP + W RA G P+
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 247
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDS 284
+ ++ G NV G+P P WL N+ + D + ++ + DS
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 285 GIYTLAVKNSWGTDKGTAKVTVL 307
G Y L VKN +G++ V+V
Sbjct: 187 GKYGLVVKNKYGSETSDFTVSVF 209
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
++DI V + ++ G P PT WL N ++++DR +I + L +
Sbjct: 301 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLS 356
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVL 307
D+G+Y +N G +A+++V+
Sbjct: 357 DAGMYQCVAENKHGVIFSSAELSVI 381
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDW-RAGGNPL 43
P I+ + + GTT+K + +G PVP + W RA G P+
Sbjct: 204 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 246
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 203 PTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR 262
P P R K P Q D+ G N + +G P+P W
Sbjct: 100 PLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR----------- 148
Query: 263 FKIVNDDKSTK--------LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
K++ ST LK+F+ + D GIY +N G DK A++ V
Sbjct: 149 -KVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 5/41 (12%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE 348
DIP+PP + +N TK+S L+W+AP D+ G+ I ++V+E
Sbjct: 19 DIPNPP----RIANRTKNSLTLQWKAPSDN-GSKIQNFVLE 54
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE 447
PD P P + + K+ + L+W P D GS I +++E
Sbjct: 18 PDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLE 54
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
K+ P I R + ++K+ G +G P P+ W+ D + R ++ +S
Sbjct: 98 KMKPKITRPPI-NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESG 153
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGT 297
L++ + ++ D+G Y KNS GT
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGT 178
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 242 GEPIPTKEWLCNDITIISKDRFKI-----VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 296
G P P W + I + DR+++ VN D + L + D G+Y K+ G
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514
Query: 297 TDKGTAKVTVLDIP 310
+ +AK+ V +P
Sbjct: 515 VAEHSAKLNVYGLP 528
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPMGD 362
+ + D+PS P G +K +++++ + + P GG I HY V+ ++ + W +
Sbjct: 12 LALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH 70
Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGE 391
T NL Y RV AVN G+
Sbjct: 71 GVQTMVVLNNLEPNTTYEIRVAAVNGKGQ 99
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 34/87 (39%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
P P + + + + + P GG PI Y ++ K K T
Sbjct: 18 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV 77
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSK 496
+ +L+ YE RV AVN G G+ SK
Sbjct: 78 LNNLEPNTTYEIRVAAVNGKGQGDYSK 104
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 553 IDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIR 612
+ +VP P + ++ + K+ + +P S+GG I Y+V+ +E S W + ++
Sbjct: 14 LADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ 73
Query: 613 T 613
T
Sbjct: 74 T 74
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 227 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGI 286
+V G N F +NV +P +W N + + + N L++ D DSG
Sbjct: 19 RVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGT 78
Query: 287 YTLAVKNSWG--TDKGTAKVT 305
Y N G +D T VT
Sbjct: 79 YRAVCTNYKGEASDYATLDVT 99
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 181 EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV 240
E +Q ++ +A N G S P ++ R + V+P + +S ++ G N
Sbjct: 173 ETDQGKYECVATNSAGV-RYSSPANLYV-RVQNVAPRFSILPMSH-EIMPGGNVNITCVA 229
Query: 241 IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 300
+G P+P +W+ + +D + + L++ D K DS YT +S G +
Sbjct: 230 VGSPMPYVKWMQGAEDLTPEDDMPVGRN----VLELTDVK--DSANYTCVAMSSLGVIEA 283
Query: 301 TAKVTVLDIP 310
A++TV +P
Sbjct: 284 VAQITVKSLP 293
>pdb|1LWR|A Chain A, Solution Structure Of The Ncam Fibronectin Type Iii Module
2
Length = 96
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 434 KKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG 490
+ DGGSPI Y+++ + W+ +P+ + L EYE V+A N+ G
Sbjct: 26 QDDGGSPIRHYLVKYRALASEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 82
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 6/150 (4%)
Query: 177 LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEF 236
L +++ +Q + P + +A +V P+ + +S + + G + F
Sbjct: 159 LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVS-VDLALGESGTF 217
Query: 237 DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 296
+V G W ++ I +K+ + + L V +GD+G YT N G
Sbjct: 218 KCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG 277
Query: 297 TDKGTAKVTVLDIPSPPE--GPLKPSNITK 324
D +A+ L + PP L+PS I K
Sbjct: 278 KDSCSAQ---LGVQEPPRFIKKLEPSRIVK 304
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
P + R + ++ G++ + + G P W + + S ++KI++++ T +
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 443
Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ + D G Y N G+D +T + +PP K S+I+
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVGSIT---LKAPPRFVKKLSDIS 488
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 222 QLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDS 279
+LSDI G + + G EPI W + I+ + D I + L+ +
Sbjct: 483 KLSDISTVVGEEVQLQATIEGAEPISVA-WFKDKGEIVRESDNIWISYSENIATLQFSRA 541
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
+ ++G YT +KN GT + A ++VL+
Sbjct: 542 EPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Query: 204 TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF 263
+A + + +K+ P R +L D+ G F+ + G W + +
Sbjct: 90 SAVLVIKERKLPPSFAR-KLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANL 148
Query: 264 KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNI 322
+ L++ + + G Y + N GT +AK+T+ + PP LKP ++
Sbjct: 149 QTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSV 207
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
L D V G +F +V G P+P WL N I + + +L + D+
Sbjct: 18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI---QYARSTCEAGVAELHIQDALPE 74
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTV 306
D G YT +N+ G +A VTV
Sbjct: 75 DHGTYTCLAENALGQVSCSAWVTV 98
>pdb|2IC2|A Chain A, Crystal Structure Of The First Fniii Domain Of Ihog
pdb|2IC2|B Chain B, Crystal Structure Of The First Fniii Domain Of Ihog
Length = 115
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP--------------KYGPWEKA 458
P P VT + V L W P+ DG PI + ++ + YG +
Sbjct: 6 PTPPNVTRLSDESVXLRWXVPRNDG-LPIVIFKVQYRXVGKRKNWQTTNDNIPYGKPKWN 64
Query: 459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+ + TA SV DLK Y FR++AV + S SA +P
Sbjct: 65 SELGKSFTA-SVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 110
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
+ + G + F +V G W ++ I +K+ + + L V +GD+G
Sbjct: 15 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 286 IYTLAVKNSWGTDKGTAKVTVLDIPSPPE--GPLKPSNITK 324
YT N G D +A+ L + +PP L+PS I K
Sbjct: 75 QYTCYASNVAGKDSCSAQ---LGVQAPPRFIKKLEPSRIVK 112
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTKLKVFDSKRGDSGI 286
+ G IG P P W+ N + +S R+ + K L++ +S+ D G
Sbjct: 124 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL----KDGFLQIENSREEDQGK 179
Query: 287 YTLAVKNSWGTDKGTA 302
Y +NS GT+ A
Sbjct: 180 YECVAENSMGTEHSKA 195
>pdb|2EKJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Collagen
Alpha-1(Xx) Chain
Length = 105
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPK--YGPWEKACIVPANITATSVPDLKEGEEYEF 481
D + + WTPP + Y + P GP EK+ VP + ++PDL+ +Y
Sbjct: 22 DSLQVSWTPPL----GRVLHYWLTYAPASGLGP-EKSVSVPGARSHVTLPDLQAATKYRV 76
Query: 482 RVIAVNKGGPGEPSKASAPVTC 503
V A+ G E A+ C
Sbjct: 77 LVSAIYAAGRSEAVSATGQTAC 98
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 187 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 246
++V A N+GG S + + K+ + + + G I G+P P
Sbjct: 77 YQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 247 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS--KRGDSGIYTLAVKNSWGTDKGTAKV 304
W I + ++++ T L VF + +R D+G Y + KN +G D+ T ++
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSL-VFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 305 TVLD 308
V D
Sbjct: 194 DVAD 197
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS--TKLKVF 277
+++L ++ VR SN V G P P +W II+ + + K +L +
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67
Query: 278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTV-----LDIPSPPEG 315
D+ +Y + N G+ GTA + V + +P EG
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 32.7 bits (73), Expect = 0.56, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 422 GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEF 481
G+ V L W P++ G I +Y I+ K + + A T +V LK G Y F
Sbjct: 23 GQTSVSLLWQEPEQPNGI-ILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVF 81
Query: 482 RVIAVNKGGPGEPSKASAPVTCKP 505
+V A G G S+A T KP
Sbjct: 82 QVRARTSAGCGRFSQAMEVETGKP 105
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 187 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 246
++V A N+GG S + + K+ + + + G I G+P P
Sbjct: 75 YQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 132
Query: 247 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS--KRGDSGIYTLAVKNSWGTDKGTAKV 304
W I + ++++ T L VF + +R D+G Y + KN +G D+ T ++
Sbjct: 133 VITWQKGQDLIDNNGHYQVIVTRSFTSL-VFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 191
Query: 305 TVLD 308
V D
Sbjct: 192 DVAD 195
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS--TKLKVF 277
+++L ++ VR SN V G P P +W II+ + + K +L +
Sbjct: 6 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 65
Query: 278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTV-----LDIPSPPEG 315
D+ +Y + N G+ GTA + V + +P EG
Sbjct: 66 SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 108
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
LS +++ G + F IGEP + IIS R + + ++L ++++
Sbjct: 9 LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 68
Query: 283 DSGIYTLAVKNSWG-TDKGTA------KVTVLDIPSPPE 314
D+GIY ++ G T + T K+T ++ SP E
Sbjct: 69 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQE 107
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 215 SPYINRDQLSD---IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
+PY R + D + V A + F G P P+ WL N + R +
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 272 TKLKVFDSKR-GDSGIYTLAVKNSWGTDKGTAKVTVLD 308
V +S D G YT V+N +G+ + T + VL+
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 216
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTKLKVFDSKRGDSGI 286
+ G IG P P W+ N + +S R+ + K L++ +S+ D G
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL----KDGFLQIENSREEDQGK 177
Query: 287 YTLAVKNSWGTDKGTA 302
Y +NS GT+ A
Sbjct: 178 YECVAENSMGTEHSKA 193
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
++V +G+ E V+GEP P W + + +R D L + + D+G
Sbjct: 24 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 83
Query: 286 IYTLAVKNSWGTDKGTAKVTVLDIPS 311
+Y +N+ G A VTVL+ P+
Sbjct: 84 VYVCRARNAAGEAYAAAAVTVLEPPA 109
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP--KYGPWEKACIVPANITA 467
P P VT+ V L W + P++ Y I+ + GP+++ V T
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSGNSE---PVTYYGIQYRAAGTEGPFQEVDGVAT--TR 62
Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKA 497
S+ L EY FRV+AVN G G PS+A
Sbjct: 63 YSIGGLSPFSEYAFRVLAVNSIGRGPPSEA 92
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
++V +G+ E V+GEP P W + + +R D L + + D+G
Sbjct: 24 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 83
Query: 286 IYTLAVKNSWGTDKGTAKVTVLDIPS 311
+Y +N+ G A VTVL+ P+
Sbjct: 84 VYVCRARNAAGEAYAAAAVTVLEPPA 109
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYTRAENLI 374
L ++T ++ + WR P G + YV+E T W+ + T L
Sbjct: 14 LTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLP 73
Query: 375 EGHDYNFRVKAVNKIGESLPLVCQSPITAKD 405
RVKAVN G S P PI K+
Sbjct: 74 TDAKIFVRVKAVNAAGASEPKYYSQPILVKE 104
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 426 VDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484
V + W PP G + + Y++E + W A + T ++ L + RV
Sbjct: 24 VTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVK 83
Query: 485 AVNKGGPGEPSKASAPVTCK 504
AVN G EP S P+ K
Sbjct: 84 AVNAAGASEPKYYSQPILVK 103
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
+ + G + F +V G W ++ I +K+ + + L V +GD+G
Sbjct: 15 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 286 IYTLAVKNSWGTDKGTAKVTVLDIPSPPE--GPLKPSNITK 324
YT N G D +A+ L + PP L+PS I K
Sbjct: 75 QYTCYASNVAGKDSCSAQ---LGVQEPPRFIKKLEPSRIVK 112
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 215 SPYINRDQLSD---IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
+PY R + D + V A + F G P P+ WL N + R +
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 272 TKLKVFDSKR-GDSGIYTLAVKNSWGTDKGTAKVTVLD 308
V +S D G YT V+N +G+ + T + VL+
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 108
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 16/206 (7%)
Query: 290 AVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEK 349
A+K++ + VT L+ SPP + ++ T+++ + WR + + V
Sbjct: 93 ALKDTLTSRPAQGVVTTLENVSPPRR-ARVTDATETTITISWRTKTETITGFQVDAVPAN 151
Query: 350 MDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGR 409
R + S T T L G DY + +N S P+V D
Sbjct: 152 GQTPIQRTIKPDVRSYTIT---GLQPGTDYKIYLYTLNDNARSSPVVI-------DASTA 201
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE-KKPKYGPWEKACIVPANITAT 468
D P + + + W PP+ I+ YII+ +KP P E +T
Sbjct: 202 IDAPSNLRFLATTPNSLLVSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPGVTEA 257
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEP 494
++ L+ G EY VIA+ EP
Sbjct: 258 TITGLEPGTEYTIYVIALKNNQKSEP 283
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
LS +++ G + F IGEP + IIS R + + ++L ++++
Sbjct: 11 LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 70
Query: 283 DSGIYTLAVKNSWG-TDKGTA------KVTVLDIPSPPE 314
D+GIY ++ G T + T K+T ++ SP E
Sbjct: 71 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQE 109
>pdb|3P9Z|A Chain A, Crystal Structure Of Uroporphyrinogen-Iii Synthetase From
Helicobacter Pylori 26695
Length = 229
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 527 PFITLLF--KNFVLDLNEGLKSMVKLSYIDNVPGKP-SKPEATDVDKDHIKIKWQQPISN 583
PF L+F KN V L E LK+ KL + N+P S+P A + H K+ + ++
Sbjct: 37 PFNALIFTSKNAVFSLLETLKNSPKLKXLQNIPAYALSEPTAKTLQDHHFKVAFXGEKAH 96
Query: 584 GGSAIK 589
G ++
Sbjct: 97 GKEFVQ 102
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 16/206 (7%)
Query: 290 AVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEK 349
A+K++ + VT L+ SPP + ++ T+++ + WR + + V
Sbjct: 74 ALKDTLTSRPAQGVVTTLENVSPPRR-ARVTDATETTITISWRTKTETITGFQVDAVPAN 132
Query: 350 MDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGR 409
R + S T T L G DY + +N S P+V D
Sbjct: 133 GQTPIQRTIKPDVRSYTIT---GLQPGTDYKIYLYTLNDNARSSPVVI-------DASTA 182
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE-KKPKYGPWEKACIVPANITAT 468
D P + + + W PP+ I+ YII+ +KP P E +T
Sbjct: 183 IDAPSNLRFLATTPNSLLVSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPGVTEA 238
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEP 494
++ L+ G EY VIA+ EP
Sbjct: 239 TITGLEPGTEYTIYVIALKNNQKSEP 264
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 40 GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT-EGDTPKGKVLDLIEGNQ 98
G P + W+ + G + ++ N PI + +T GD +++DL
Sbjct: 22 GKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTM 81
Query: 99 YEFRVLAVNKGGPGEPSDP 117
Y FR+ A N G G SDP
Sbjct: 82 YYFRIQARNSKGVGPLSDP 100
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 461 VPANITATSVPD--------LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 507
VP++ +VPD L+ G Y+FRV +N G G S+ SA TC P F
Sbjct: 33 VPSDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGF 87
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
++V +G+ E V+GEP P W + + +R D L + + D+G
Sbjct: 23 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 82
Query: 286 IYTLAVKNSWGTDKGTAKVTVLDIP 310
+Y +N+ G A VTVL+ P
Sbjct: 83 VYVCRARNAAGEAYAAAAVTVLEPP 107
>pdb|1WIS|A Chain A, Solution Structure Of The Fifth Fniii Domain From Human
Kiaa1514 Protein
Length = 124
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 410 PDRPGQPT---VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIV---- 461
P+ PG PT +++ G V L++ P DG + IS++++E + G E+ ++
Sbjct: 15 PELPGPPTNLGISNIGPRSVTLQFRP-GYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLS 73
Query: 462 -PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
+ + VPDL Y FR+ VN G PS+ S
Sbjct: 74 NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPS 111
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV--NDDKSTKLKVFDSK-RGDSGI 286
+G F GEP P W+ +S RF+++ +D + L++ + + D I
Sbjct: 21 SGGVASFVCQATGEPKPRITWM-KKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAI 79
Query: 287 YTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
Y NS G +AK++VL+ P G
Sbjct: 80 YECTATNSLGEINTSAKLSVLEEDQLPSG 108
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVND-DKSTKLKVFDS 279
+L K+ G F V G P P W + I K D + I D D + L S
Sbjct: 14 KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAS 73
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
D G YT+ N G T ++ V + S P
Sbjct: 74 TLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPS 108
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 24/186 (12%)
Query: 307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG----D 362
+++P P + L +IT SS L W P + + I+ Y + + G +P+ D
Sbjct: 21 MEVPQPTD--LSFVDITDSSIGLRW-TPLN--SSTIIGYRITVV--AAGEGIPIFEDFVD 73
Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWG 422
S Y L G DY+ V V GES P TA P P T+ G
Sbjct: 74 SSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQ-TAVPP------PTDLRFTNIG 126
Query: 423 KDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA--CIVPANITATSVPDLKEGEEYE 480
D + + W PP ++ +++ P + A I P++ A + +L G EY
Sbjct: 127 PDTMRVTWAPPPSID---LTNFLVRYSPVKNEEDVAELSISPSD-NAVVLTNLLPGTEYV 182
Query: 481 FRVIAV 486
V +V
Sbjct: 183 VSVSSV 188
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCN---DITIISKDRFKIVN----------DDKSTKL 274
V GSN EF V +P P +WL + + + I D V D + L
Sbjct: 128 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 187
Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
+ + D+G YT NS G +A +TVL+
Sbjct: 188 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 221
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCN---DITIISKDRFKIVN----------DDKSTKL 274
V GSN EF V +P P +WL + + + I D V D + L
Sbjct: 127 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 186
Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
+ + D+G YT NS G +A +TVL+
Sbjct: 187 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV--NDDKSTKLKVFDSK-RGDSGI 286
+G F GEP P W+ +S RF+++ +D + L++ + + D I
Sbjct: 20 SGGVASFVCQATGEPKPRITWM-KKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAI 78
Query: 287 YTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
Y NS G +AK++VL+ P G
Sbjct: 79 YECTATNSLGEINTSAKLSVLEEEQLPPG 107
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCN---DITIISKDRFKIVN----------DDKSTKL 274
V GSN EF V +P P +WL + + + I D V D + L
Sbjct: 127 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 186
Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
+ + D+G YT NS G +A +TVL+
Sbjct: 187 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 284
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 22 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DK 79
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLD 308
G YT V+N +G+ T + V++
Sbjct: 80 GNYTCVVENEYGSINHTYHLDVVE 103
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 284
V A + +F G P+PT WL N + R +K+ N S L + D
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWS--LIMESVVPSDK 80
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLD 308
G YT V+N +G+ T + V++
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVE 104
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 284
V A + +F G P+PT WL N + R +K+ N S L + D
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWS--LIMESVVPSDK 80
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLD 308
G YT V+N +G+ T + V++
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVE 104
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 284
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 31 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP--SDK 88
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLD 308
G YT V+N +G+ T + V++
Sbjct: 89 GNYTCVVENEYGSINHTYHLDVVE 112
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 284
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 21 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP--SDK 78
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLD 308
G YT V+N +G+ T + V++
Sbjct: 79 GNYTCVVENEYGSINHTYHLDVVE 102
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 284
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DK 80
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLD 308
G YT V+N +G+ T + V++
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVE 104
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 473 LKEGEEYEFRVIAVNKGGPG 492
LK+ EY FRV+A NK GPG
Sbjct: 78 LKKYTEYSFRVVAYNKHGPG 97
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 30 PVPHVDWRA-GGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG 88
P P + RA +P ++ WE G+ K+ + +G + + T G
Sbjct: 18 PGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTING 77
Query: 89 KVLDLIEGNQYEFRVLAVNKGGPG 112
L + +Y FRV+A NK GPG
Sbjct: 78 ----LKKYTEYSFRVVAYNKHGPG 97
>pdb|1QR4|A Chain A, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
pdb|1QR4|B Chain B, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
Length = 186
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 320 SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR-WVPMGDVSGTYTRAENLIEGHD 378
S+IT++S + W PR + + Y V + + G V D S T T+ L+ G D
Sbjct: 104 SDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVD 159
Query: 379 YNFRVKAVNKIGESLPL 395
YN + +V ES P+
Sbjct: 160 YNVNIISVKGFEESEPI 176
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 213 KVSPYINRDQLSDIKVRAGSNF---EFDINVIGEPIPTKEWLCNDITIISKDR---FKIV 266
K +PY + + ++ A F +F G P+PT WL N + R +K+
Sbjct: 13 KRAPYWTNTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 72
Query: 267 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
N S ++ D G YT V+N +G+ T + V++
Sbjct: 73 NQHWSLIMESVVP--SDKGNYTCVVENEYGSINHTYHLDVVE 112
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 426 VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA--CIVPANITATSVPDLKEGEEYEFRV 483
V L W PP + G+ I + + + E+A P ++ T V +LK Y FRV
Sbjct: 34 VRLSWRPPAEAKGN-IQTFTVFFSREGDNRERALNTTQPGSLQLT-VGNLKPEAMYTFRV 91
Query: 484 IAVNKGGPGEPSK 496
+A N+ GPGE S+
Sbjct: 92 VAYNEWGPGESSQ 104
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
LS +++ G + F IGEP + IIS R + + ++L ++++
Sbjct: 7 LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 66
Query: 283 DSGIYTLAVKNSWG 296
D+GIY ++ G
Sbjct: 67 DAGIYRCQATDAKG 80
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKL 274
P + R + V F G P+PT W + + + ++D R K + + L
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV---L 64
Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV--LDIPSPPEGPLKPSNI 322
++ +K GD+G YT G +A + V +P P P P+ I
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLI 114
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDS 279
+++ V GS+ F + V+G+P P EW N + I DR + +D +L + D
Sbjct: 10 ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDV 69
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTV 306
DS + N G A + V
Sbjct: 70 TGEDSASIMVKAINIAGETSSHAFLLV 96
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 29/112 (25%)
Query: 226 IKVRAGSNFEFDINVIGEPIPT----------------------------KEWLCNDITI 257
I V AG+ D+ + G+P PT EW+ + +
Sbjct: 28 IVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLL 87
Query: 258 ISKD-RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
+ R ++ + V +++ D G+YT+ VKN G D+ V V+D
Sbjct: 88 CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
>pdb|1J4B|A Chain A, Recombinant Mouse-muscle Adenylosuccinate Synthetase
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With
6-Phosphoryl-Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|2DGN|A Chain A, Mouse Muscle Adenylosuccinate Synthetase Partially Ligated
Complex With Gtp, 2'-Deoxy-Imp
Length = 457
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 57 GDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 104
GD KGKV+DL+ + I +C +G G + +++G +Y+F +L
Sbjct: 42 GDEGKGKVVDLLATDADIVSRC---QGGNNAGHTV-VVDGKEYDFHLL 85
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 13 KLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
KL G+TL +G P+PH W PL
Sbjct: 14 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 44
>pdb|2KBG|A Chain A, Solution Structure Of The Second Fibronectin Type-Iii
Module Of Ncam2
Length = 114
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVSGT-- 366
PSPP +PS+ ++ +DDGG IL Y+V+ + + +W+ V G
Sbjct: 9 PSPPSIHGQPSSGKSFKLSI---TKQDDGGAPILEYIVKYRSKDKEDQWLE-KKVQGNKD 64
Query: 367 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQ 398
+ E+L Y ++ A N++G S P V +
Sbjct: 65 HIILEHLQWTMGYEVQITAANRLGYSEPTVYE 96
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 284
V A + +F G P PT WL N + R +K+ N S L D
Sbjct: 30 VPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWS--LIXESVVPSDK 87
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLD 308
G YT V+N +G+ T + V++
Sbjct: 88 GNYTCVVENEYGSINHTYHLDVVE 111
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 250 WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD- 308
WL + + + +R +I ++ ++V DS DSG+Y + G+D V V D
Sbjct: 36 WLRDGVQLAESNRTRITGEE----VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDA 91
Query: 309 IPSPP 313
+PS P
Sbjct: 92 LPSGP 96
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 284
V A + +F G P PT WL N + R +K+ N S L D
Sbjct: 23 VPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWS--LIXESVVPSDK 80
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLD 308
G YT V+N +G+ T + V++
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVE 104
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 13 KLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
KL G+TL +G P+PH W PL
Sbjct: 129 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 159
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK----DRFKIVNDDKS 271
P+I D D+ + G E P+ + +WL + T++S R ++ND
Sbjct: 8 PFI-MDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 64
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
V S D+G+YT V N G +A + V PS
Sbjct: 65 NFSHVLLS---DTGVYTCMVTNVAGNSNASAYLNVSSGPS 101
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 413 PGQP---TVTDWGKDHVDLEWTPPKKDGGSPISQY-IIEKKPKYGPWEKACIVPANITAT 468
PGQP + + L WTPP+ D I+ Y ++ K ++G ++ I P T+
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIEPG--TSY 72
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPG 492
+ LK Y FR+ A + G G
Sbjct: 73 RLQGLKPNSLYYFRLAARSPQGLG 96
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 10 GDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
GD+ + G + D + G P P + W+ G P +RP
Sbjct: 17 GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKP--VRP 52
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
L+D V G I E IP K W N + + DR K+V + KL + ++
Sbjct: 14 LTDQTVNLGKEICLKCE-ISENIPGK-WTKNGLPVQESDRLKVVQKGRIHKLVIANALTE 71
Query: 283 DSGIYTLA 290
D G Y A
Sbjct: 72 DEGDYVFA 79
>pdb|3N6L|A Chain A, The Crystal Strucutre Of Rna-Dependent Rna Polymerase Of
Ev71 Virus
pdb|3N6M|A Chain A, Crystal Structure Of Ev71 Rdrp In Complex With Gtp
pdb|3N6N|A Chain A, Crystal Structure Of Ev71 Rdrp In Complex With Br-Utp
Length = 462
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 122 IARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCP--IWEKCAQTEGDTPKGKVLDL 179
I + KKGK + + L DS+Y ++ L++ FH P I DT K+ L
Sbjct: 165 IDKIKKGKSRLIEASSLNDSVYLRMAFGHLYETFHANPGTITGSAVGCNPDTFWSKLPIL 224
Query: 180 IEGNQYEF 187
+ G+ + F
Sbjct: 225 LPGSLFAF 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,195,686
Number of Sequences: 62578
Number of extensions: 1083260
Number of successful extensions: 2071
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 328
length of query: 616
length of database: 14,973,337
effective HSP length: 105
effective length of query: 511
effective length of database: 8,402,647
effective search space: 4293752617
effective search space used: 4293752617
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)