Query psy12426
Match_columns 616
No_of_seqs 308 out of 2985
Neff 11.3
Searched_HMMs 46136
Date Fri Aug 16 19:00:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 3.7E-57 8E-62 457.5 48.2 530 1-601 240-863 (1051)
2 KOG3513|consensus 100.0 2E-55 4.3E-60 445.0 49.4 473 63-608 259-770 (1051)
3 KOG4221|consensus 100.0 1E-46 2.2E-51 379.2 46.6 575 5-608 240-977 (1381)
4 KOG4221|consensus 100.0 3E-46 6.4E-51 375.8 43.0 523 9-598 147-759 (1381)
5 KOG4222|consensus 100.0 4.3E-40 9.2E-45 329.8 25.6 496 46-596 199-789 (1281)
6 KOG4222|consensus 100.0 2.5E-29 5.4E-34 253.0 24.1 540 1-607 31-694 (1281)
7 KOG4194|consensus 99.8 6.6E-20 1.4E-24 173.7 16.9 271 1-308 503-797 (873)
8 PHA02785 IL-beta-binding prote 99.8 3.6E-19 7.8E-24 169.4 20.7 242 10-298 34-318 (326)
9 KOG0196|consensus 99.8 1.2E-16 2.5E-21 157.1 20.9 195 308-505 330-537 (996)
10 KOG4194|consensus 99.7 9.1E-16 2E-20 146.0 19.9 207 172-391 574-786 (873)
11 cd05762 Ig8_MLCK Eighth immuno 99.6 1.3E-14 2.9E-19 111.2 13.4 93 221-313 5-97 (98)
12 PHA02826 IL-1 receptor-like pr 99.6 6.1E-14 1.3E-18 124.7 17.8 109 172-295 98-211 (227)
13 cd05851 Ig3_Contactin-1 Third 99.5 1.4E-14 3E-19 109.0 6.8 82 1-115 1-82 (88)
14 PHA02785 IL-beta-binding prote 99.5 4.2E-12 9.2E-17 121.1 22.6 234 135-391 57-317 (326)
15 cd05762 Ig8_MLCK Eighth immuno 99.5 1.3E-13 2.7E-18 105.9 8.8 85 2-115 1-85 (98)
16 cd05747 Ig5_Titin_like M5, fif 99.5 1.9E-13 4E-18 104.3 9.4 86 1-115 3-88 (92)
17 KOG3515|consensus 99.5 6.3E-11 1.4E-15 119.4 28.0 352 174-601 363-734 (741)
18 cd05737 Ig_Myomesin_like_C C-t 99.4 8.1E-13 1.8E-17 100.7 9.3 83 6-115 5-87 (92)
19 cd05747 Ig5_Titin_like M5, fif 99.4 4.5E-12 9.7E-17 96.7 12.6 89 215-304 3-91 (92)
20 cd05851 Ig3_Contactin-1 Third 99.4 2.8E-12 6.1E-17 96.4 10.6 86 216-306 2-87 (88)
21 cd04968 Ig3_Contactin_like Thi 99.4 9.4E-13 2E-17 99.6 8.0 82 2-115 1-82 (88)
22 cd05870 Ig5_NCAM-2 Fifth immun 99.4 1E-12 2.3E-17 101.5 8.3 85 1-115 2-93 (98)
23 cd04972 Ig_TrkABC_d4 Fourth do 99.4 1.5E-12 3.2E-17 98.9 8.8 84 4-115 2-85 (90)
24 cd05848 Ig1_Contactin-5 First 99.4 2E-12 4.2E-17 98.6 9.2 82 2-114 2-87 (94)
25 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 8E-12 1.7E-16 93.3 12.3 83 224-306 3-86 (86)
26 cd05737 Ig_Myomesin_like_C C-t 99.4 7.7E-12 1.7E-16 95.3 12.4 86 221-306 6-92 (92)
27 cd05891 Ig_M-protein_C C-termi 99.4 2.4E-12 5.2E-17 97.7 9.3 83 6-115 5-87 (92)
28 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 2.9E-12 6.2E-17 95.7 9.3 78 10-115 3-81 (86)
29 cd05728 Ig4_Contactin-2-like F 99.4 2.1E-12 4.6E-17 96.6 8.4 77 7-115 4-80 (85)
30 cd05852 Ig5_Contactin-1 Fifth 99.4 5E-12 1.1E-16 90.8 9.7 73 231-306 1-73 (73)
31 cd05852 Ig5_Contactin-1 Fifth 99.4 1.5E-12 3.3E-17 93.5 6.9 68 17-115 1-68 (73)
32 cd05745 Ig3_Peroxidasin Third 99.4 1.7E-12 3.6E-17 94.4 6.8 69 16-115 1-69 (74)
33 cd05730 Ig3_NCAM-1_like Third 99.4 4.7E-12 1E-16 97.4 9.5 85 1-115 1-87 (95)
34 cd05732 Ig5_NCAM-1_like Fifth 99.4 2.7E-12 5.8E-17 99.3 7.9 85 1-115 2-91 (96)
35 cd05735 Ig8_DSCAM Eight immuno 99.4 1.6E-11 3.4E-16 92.3 11.8 83 231-313 1-88 (88)
36 cd05749 Ig2_Tyro3_like Second 99.4 4.7E-12 1E-16 92.6 8.7 72 7-114 3-75 (81)
37 cd04972 Ig_TrkABC_d4 Fourth do 99.3 2.3E-11 5.1E-16 92.3 12.3 85 222-306 6-90 (90)
38 cd05745 Ig3_Peroxidasin Third 99.3 7.9E-12 1.7E-16 90.8 9.1 74 230-306 1-74 (74)
39 cd05892 Ig_Myotilin_C C-termin 99.3 1.7E-11 3.6E-16 88.4 10.0 73 234-306 1-75 (75)
40 PF07679 I-set: Immunoglobulin 99.3 2.3E-11 4.9E-16 92.9 11.2 86 221-306 5-90 (90)
41 PF07679 I-set: Immunoglobulin 99.3 6.6E-12 1.4E-16 95.9 7.8 84 2-114 1-84 (90)
42 cd05868 Ig4_NrCAM Fourth immun 99.3 4.1E-12 8.9E-17 92.6 6.3 70 17-115 1-70 (76)
43 cd05849 Ig1_Contactin-1 First 99.3 8.3E-12 1.8E-16 94.6 8.1 81 1-114 1-86 (93)
44 cd04975 Ig4_SCFR_like Fourth i 99.3 5.9E-12 1.3E-16 96.6 7.0 83 9-114 10-93 (101)
45 cd05850 Ig1_Contactin-2 First 99.3 1.6E-11 3.5E-16 93.7 9.3 82 2-114 2-87 (94)
46 cd05892 Ig_Myotilin_C C-termin 99.3 8.8E-12 1.9E-16 89.8 7.4 69 20-115 1-70 (75)
47 cd05869 Ig5_NCAM-1 Fifth immun 99.3 9.6E-12 2.1E-16 95.9 8.0 86 1-115 2-92 (97)
48 cd05748 Ig_Titin_like Immunogl 99.3 4.4E-11 9.5E-16 87.1 11.1 73 234-306 2-74 (74)
49 cd05867 Ig4_L1-CAM_like Fourth 99.3 1.2E-11 2.6E-16 90.4 7.9 67 17-115 1-70 (76)
50 cd04975 Ig4_SCFR_like Fourth i 99.3 4E-11 8.6E-16 92.0 11.1 84 224-307 11-100 (101)
51 cd05865 Ig1_NCAM-1 First immun 99.3 9.8E-12 2.1E-16 94.5 7.6 80 9-115 7-90 (96)
52 cd05730 Ig3_NCAM-1_like Third 99.3 6.2E-11 1.3E-15 91.2 12.3 84 223-308 10-94 (95)
53 cd05863 Ig2_VEGFR-3 Second imm 99.3 7.8E-12 1.7E-16 87.3 6.4 60 20-115 1-60 (67)
54 PF00041 fn3: Fibronectin type 99.3 1E-11 2.2E-16 93.8 7.5 84 411-495 1-85 (85)
55 cd04968 Ig3_Contactin_like Thi 99.3 6.6E-11 1.4E-15 89.5 11.8 83 220-306 5-87 (88)
56 cd07693 Ig1_Robo First immunog 99.3 1.2E-11 2.5E-16 96.9 7.9 86 1-114 1-92 (100)
57 cd05758 Ig5_KIRREL3-like Fifth 99.3 2.5E-11 5.4E-16 93.7 9.6 89 1-115 2-94 (98)
58 cd05893 Ig_Palladin_C C-termin 99.3 3.8E-11 8.3E-16 86.7 9.8 73 234-306 1-75 (75)
59 cd05740 Ig_CEACAM_D4 Fourth im 99.3 2.1E-11 4.6E-16 91.9 8.7 82 1-114 1-83 (91)
60 cd05723 Ig4_Neogenin Fourth im 99.3 4.6E-11 1E-15 85.8 10.0 71 233-306 1-71 (71)
61 cd05728 Ig4_Contactin-2-like F 99.3 5E-11 1.1E-15 89.2 10.4 81 222-306 5-85 (85)
62 cd05893 Ig_Palladin_C C-termin 99.3 7.7E-12 1.7E-16 90.3 5.8 69 20-115 1-70 (75)
63 KOG3515|consensus 99.3 2.8E-10 6.1E-15 114.8 18.0 414 12-453 216-733 (741)
64 cd05869 Ig5_NCAM-1 Fifth immun 99.3 1.2E-10 2.6E-15 89.7 12.2 84 223-306 9-97 (97)
65 cd05723 Ig4_Neogenin Fourth im 99.3 1.6E-11 3.5E-16 88.2 6.8 66 19-115 1-66 (71)
66 cd04973 Ig1_FGFR First immunog 99.2 3.3E-11 7.2E-16 88.6 8.3 72 9-113 1-72 (79)
67 cd05743 Ig_Perlecan_D2_like Im 99.2 2.8E-11 6E-16 88.9 7.8 71 17-115 1-71 (78)
68 cd05743 Ig_Perlecan_D2_like Im 99.2 8.2E-11 1.8E-15 86.4 10.3 75 231-305 1-75 (78)
69 cd05865 Ig1_NCAM-1 First immun 99.2 9.9E-11 2.1E-15 89.1 11.0 84 223-306 7-95 (96)
70 cd05870 Ig5_NCAM-2 Fifth immun 99.2 1.3E-10 2.8E-15 89.7 11.6 83 223-305 8-97 (98)
71 cd05891 Ig_M-protein_C C-termi 99.2 1.8E-10 4E-15 87.4 12.1 84 223-306 8-92 (92)
72 cd05866 Ig1_NCAM-2 First immun 99.2 1.6E-10 3.6E-15 86.8 11.6 82 223-305 7-90 (92)
73 cd05866 Ig1_NCAM-2 First immun 99.2 4.2E-11 9.1E-16 90.0 8.4 77 8-113 6-83 (92)
74 cd04969 Ig5_Contactin_like Fif 99.2 8.4E-11 1.8E-15 85.2 9.6 73 231-306 1-73 (73)
75 cd04978 Ig4_L1-NrCAM_like Four 99.2 2.1E-11 4.5E-16 89.5 6.5 70 17-115 1-70 (76)
76 cd05746 Ig4_Peroxidasin Fourth 99.2 1.4E-11 3E-16 88.0 5.3 65 20-115 1-65 (69)
77 cd05724 Ig2_Robo Second immuno 99.2 4.2E-11 9.2E-16 90.4 8.0 76 8-114 2-79 (86)
78 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 4E-11 8.7E-16 85.1 7.2 65 17-115 1-65 (69)
79 cd04969 Ig5_Contactin_like Fif 99.2 3.3E-11 7.2E-16 87.3 6.8 68 17-115 1-68 (73)
80 cd05722 Ig1_Neogenin First imm 99.2 5.2E-11 1.1E-15 91.5 7.9 76 6-112 3-86 (95)
81 cd05732 Ig5_NCAM-1_like Fifth 99.2 2.4E-10 5.3E-15 88.2 11.7 84 223-306 8-96 (96)
82 cd05744 Ig_Myotilin_C_like Imm 99.2 1.9E-10 4.2E-15 83.4 10.4 73 234-306 1-75 (75)
83 cd05854 Ig6_Contactin-2 Sixth 99.2 2.4E-10 5.2E-15 85.1 11.0 79 232-310 1-85 (85)
84 cd05868 Ig4_NrCAM Fourth immun 99.2 1.6E-10 3.6E-15 84.1 9.7 74 231-306 1-75 (76)
85 cd05867 Ig4_L1-CAM_like Fourth 99.2 2.5E-10 5.3E-15 83.4 10.7 72 231-306 1-75 (76)
86 cd05864 Ig2_VEGFR-2 Second imm 99.2 3.1E-11 6.8E-16 85.5 5.7 63 20-115 1-63 (70)
87 cd05748 Ig_Titin_like Immunogl 99.2 8.4E-11 1.8E-15 85.6 8.1 69 19-115 1-69 (74)
88 cd05859 Ig4_PDGFR-alpha Fourth 99.2 2.1E-10 4.6E-15 88.2 10.7 83 225-307 12-100 (101)
89 cd04976 Ig2_VEGFR Second immun 99.2 4.2E-11 9.1E-16 85.8 6.2 63 20-114 1-63 (71)
90 cd05773 Ig8_hNephrin_like Eigh 99.2 5.3E-10 1.2E-14 87.7 12.7 81 230-310 22-108 (109)
91 cd05746 Ig4_Peroxidasin Fourth 99.2 1.2E-10 2.5E-15 83.2 8.1 68 234-304 1-68 (69)
92 cd05760 Ig2_PTK7 Second immuno 99.2 6.4E-11 1.4E-15 86.6 6.8 66 20-115 1-67 (77)
93 cd05859 Ig4_PDGFR-alpha Fourth 99.2 8.5E-11 1.8E-15 90.4 7.7 83 11-115 12-94 (101)
94 KOG0196|consensus 99.2 8.1E-10 1.8E-14 109.9 16.2 145 408-601 330-486 (996)
95 cd04978 Ig4_L1-NrCAM_like Four 99.2 2.8E-10 6E-15 83.5 9.6 75 231-306 1-75 (76)
96 cd04967 Ig1_Contactin First Ig 99.2 1.9E-10 4.2E-15 87.4 8.9 81 2-113 2-86 (91)
97 cd05735 Ig8_DSCAM Eight immuno 99.2 1.4E-10 3E-15 87.2 8.0 75 17-115 1-76 (88)
98 cd05863 Ig2_VEGFR-3 Second imm 99.2 2.6E-10 5.6E-15 79.6 8.8 65 234-306 1-65 (67)
99 cd05857 Ig2_FGFR Second immuno 99.2 1.6E-10 3.4E-15 87.0 8.3 78 11-115 3-80 (85)
100 cd05857 Ig2_FGFR Second immuno 99.2 4.2E-10 9.1E-15 84.6 10.6 81 226-306 4-85 (85)
101 cd04973 Ig1_FGFR First immunog 99.2 3.6E-10 7.8E-15 83.1 9.9 77 224-305 2-78 (79)
102 cd05773 Ig8_hNephrin_like Eigh 99.2 2.7E-10 6E-15 89.4 9.7 91 1-115 4-99 (109)
103 cd05744 Ig_Myotilin_C_like Imm 99.2 1.6E-10 3.5E-15 83.8 7.8 69 20-115 1-70 (75)
104 cd05855 Ig_TrkB_d5 Fifth domai 99.2 1.4E-10 3E-15 83.8 7.3 71 22-115 3-73 (79)
105 cd05739 Ig3_RPTP_IIa_LAR_like 99.1 3.6E-10 7.8E-15 80.2 9.1 68 231-304 1-68 (69)
106 cd05740 Ig_CEACAM_D4 Fourth im 99.1 6.1E-10 1.3E-14 84.0 10.7 82 221-306 8-90 (91)
107 cd05738 Ig2_RPTP_IIa_LAR_like 99.1 1.8E-10 3.9E-15 83.5 7.4 63 20-113 1-65 (74)
108 cd05853 Ig6_Contactin-4 Sixth 99.1 4.5E-10 9.7E-15 82.4 9.4 79 232-310 1-85 (85)
109 cd05876 Ig3_L1-CAM Third immun 99.1 3.4E-10 7.5E-15 81.2 8.7 70 234-306 1-70 (71)
110 cd04977 Ig1_NCAM-1_like First 99.1 3.9E-10 8.4E-15 85.6 9.3 75 9-111 7-82 (92)
111 cd05752 Ig1_FcgammaR_like Frst 99.1 1.3E-10 2.8E-15 84.5 6.1 67 2-108 1-68 (78)
112 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 6.7E-10 1.5E-14 81.5 9.9 71 236-306 3-80 (81)
113 cd04976 Ig2_VEGFR Second immun 99.1 5.2E-10 1.1E-14 80.1 8.8 69 234-306 1-69 (71)
114 cd05733 Ig6_L1-CAM_like Sixth 99.1 1.9E-10 4E-15 84.1 6.4 68 20-115 1-72 (77)
115 cd05855 Ig_TrkB_d5 Fifth domai 99.1 8.2E-10 1.8E-14 79.7 9.6 70 236-305 3-77 (79)
116 cd05726 Ig4_Robo Fhird immunog 99.1 1.1E-10 2.4E-15 88.5 5.1 68 17-115 1-76 (90)
117 cd05874 Ig6_NrCAM Sixth immuno 99.1 2.5E-10 5.5E-15 83.1 6.7 67 20-114 1-71 (77)
118 cd05864 Ig2_VEGFR-2 Second imm 99.1 7.3E-10 1.6E-14 78.5 8.7 67 235-306 2-68 (70)
119 cd07693 Ig1_Robo First immunog 99.1 1.5E-09 3.2E-14 84.8 11.3 91 215-306 1-99 (100)
120 cd05726 Ig4_Robo Fhird immunog 99.1 7.7E-10 1.7E-14 83.9 9.3 76 231-309 1-84 (90)
121 cd04970 Ig6_Contactin_like Six 99.1 1.3E-09 2.8E-14 81.7 10.3 79 232-310 1-85 (85)
122 cd05736 Ig2_Follistatin_like S 99.1 1.2E-09 2.5E-14 80.0 9.9 73 235-307 2-74 (76)
123 cd05898 Ig5_KIRREL3 Fifth immu 99.1 7.7E-10 1.7E-14 83.5 9.0 89 1-115 2-94 (98)
124 cd05873 Ig_Sema4D_like Immunog 99.1 4.3E-10 9.3E-15 82.8 7.2 67 9-108 3-70 (87)
125 cd05848 Ig1_Contactin-5 First 99.1 2.3E-09 4.9E-14 81.7 11.4 75 223-299 8-86 (94)
126 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 4.3E-10 9.4E-15 82.5 7.2 74 21-115 2-75 (81)
127 cd05738 Ig2_RPTP_IIa_LAR_like 99.1 1.3E-09 2.8E-14 79.0 9.5 70 234-306 1-73 (74)
128 cd05876 Ig3_L1-CAM Third immun 99.1 2.9E-10 6.4E-15 81.6 5.9 65 20-115 1-65 (71)
129 cd05758 Ig5_KIRREL3-like Fifth 99.1 3.1E-09 6.7E-14 82.0 11.9 82 223-304 8-97 (98)
130 cd05725 Ig3_Robo Third immunog 99.1 4.1E-10 8.8E-15 80.6 6.5 64 20-115 1-64 (69)
131 cd05760 Ig2_PTK7 Second immuno 99.1 1.5E-09 3.3E-14 79.2 9.6 71 234-306 1-74 (77)
132 cd05856 Ig2_FGFRL1-like Second 99.1 5.5E-10 1.2E-14 83.5 7.3 73 11-113 3-75 (82)
133 cd04974 Ig3_FGFR Third immunog 99.1 8.4E-10 1.8E-14 83.5 8.3 80 17-115 1-84 (90)
134 cd07702 Ig2_VEGFR-1 Second imm 99.1 3.4E-10 7.3E-15 80.3 5.6 58 20-109 1-59 (72)
135 cd05849 Ig1_Contactin-1 First 99.0 2.5E-09 5.4E-14 81.1 10.6 73 223-299 8-85 (93)
136 cd05725 Ig3_Robo Third immunog 99.0 1.3E-09 2.8E-14 78.0 8.5 69 234-306 1-69 (69)
137 cd05854 Ig6_Contactin-2 Sixth 99.0 5.2E-10 1.1E-14 83.3 6.6 71 18-115 1-76 (85)
138 cd05763 Ig_1 Subgroup of the i 99.0 1.1E-09 2.3E-14 79.9 8.0 71 234-306 1-74 (75)
139 cd05754 Ig3_Perlecan_like Thir 99.0 4.7E-10 1E-14 84.1 6.3 78 4-115 3-81 (85)
140 cd05850 Ig1_Contactin-2 First 99.0 4.5E-09 9.8E-14 80.1 11.7 73 223-299 8-86 (94)
141 cd05764 Ig_2 Subgroup of the i 99.0 2.1E-09 4.6E-14 78.1 9.5 73 231-306 1-74 (74)
142 cd05724 Ig2_Robo Second immuno 99.0 2.5E-09 5.3E-14 80.7 10.1 74 223-299 3-78 (86)
143 cd05858 Ig3_FGFR-2 Third immun 99.0 2.2E-09 4.7E-14 81.4 9.8 76 231-306 1-89 (90)
144 cd04977 Ig1_NCAM-1_like First 99.0 4.6E-09 9.9E-14 79.7 11.3 82 223-305 7-91 (92)
145 cd05875 Ig6_hNeurofascin_like 99.0 1E-09 2.2E-14 80.0 6.9 65 20-114 1-71 (77)
146 cd05856 Ig2_FGFRL1-like Second 99.0 2.3E-09 5E-14 80.1 9.0 78 226-305 4-81 (82)
147 cd05731 Ig3_L1-CAM_like Third 99.0 2.1E-09 4.5E-14 77.6 8.4 70 234-306 1-70 (71)
148 cd04974 Ig3_FGFR Third immunog 99.0 1.8E-09 3.9E-14 81.7 8.3 76 231-306 1-89 (90)
149 cd05858 Ig3_FGFR-2 Third immun 99.0 1.1E-09 2.3E-14 83.1 7.1 80 17-115 1-84 (90)
150 cd05763 Ig_1 Subgroup of the i 99.0 9.1E-10 2E-14 80.3 6.1 66 20-115 1-69 (75)
151 cd05736 Ig2_Follistatin_like S 99.0 1.6E-09 3.4E-14 79.3 7.3 68 20-115 1-68 (76)
152 cd05749 Ig2_Tyro3_like Second 99.0 4.7E-09 1E-13 76.8 9.6 70 222-299 4-74 (81)
153 cd05764 Ig_2 Subgroup of the i 99.0 1.4E-09 3E-14 79.2 6.8 67 17-114 1-68 (74)
154 cd05722 Ig1_Neogenin First imm 99.0 6.4E-09 1.4E-13 79.8 10.1 80 223-305 6-94 (95)
155 cd05750 Ig_Pro_neuregulin Immu 99.0 3.9E-09 8.4E-14 77.2 8.1 69 234-302 1-73 (75)
156 cd05734 Ig7_DSCAM Seventh immu 99.0 2.7E-09 5.8E-14 78.7 7.3 64 20-114 1-72 (79)
157 cd05756 Ig1_IL1R_like First im 98.9 3.3E-09 7.1E-14 80.4 7.7 81 224-306 7-94 (94)
158 cd05750 Ig_Pro_neuregulin Immu 98.9 1.8E-09 3.8E-14 79.0 6.0 70 20-115 1-72 (75)
159 cd05882 Ig1_Necl-1 First (N-te 98.9 6.3E-09 1.4E-13 78.8 8.8 72 9-107 4-83 (95)
160 cd07701 Ig1_Necl-3 First (N-te 98.9 5.2E-09 1.1E-13 79.7 8.3 73 9-108 4-84 (95)
161 cd05731 Ig3_L1-CAM_like Third 98.9 2.1E-09 4.5E-14 77.6 5.8 64 20-114 1-64 (71)
162 cd05756 Ig1_IL1R_like First im 98.9 2.1E-09 4.6E-14 81.4 5.9 79 9-115 6-89 (94)
163 cd05845 Ig2_L1-CAM_like Second 98.9 2.7E-09 5.8E-14 79.6 6.2 80 1-111 2-84 (95)
164 cd05765 Ig_3 Subgroup of the i 98.9 6.4E-09 1.4E-13 77.3 8.2 73 231-306 1-81 (81)
165 cd07702 Ig2_VEGFR-1 Second imm 98.9 1.1E-08 2.5E-13 72.5 8.9 62 235-300 2-64 (72)
166 cd04979 Ig_Semaphorin_C Immuno 98.9 4.1E-09 8.9E-14 79.8 7.1 72 8-110 2-75 (89)
167 cd04970 Ig6_Contactin_like Six 98.9 4.1E-09 8.8E-14 79.0 6.9 71 18-115 1-76 (85)
168 cd05765 Ig_3 Subgroup of the i 98.9 3.2E-09 6.8E-14 79.0 6.3 72 17-115 1-76 (81)
169 cd05733 Ig6_L1-CAM_like Sixth 98.9 5.8E-09 1.3E-13 76.2 7.4 64 234-299 1-70 (77)
170 cd05874 Ig6_NrCAM Sixth immuno 98.9 1.4E-08 3.1E-13 73.9 8.5 65 234-300 1-71 (77)
171 KOG4802|consensus 98.9 9.6E-08 2.1E-12 87.4 15.5 178 310-494 145-342 (516)
172 cd05853 Ig6_Contactin-4 Sixth 98.9 7.5E-09 1.6E-13 76.0 6.4 71 18-115 1-76 (85)
173 cd07701 Ig1_Necl-3 First (N-te 98.8 3.8E-08 8.2E-13 74.9 10.4 82 223-305 4-94 (95)
174 cd05898 Ig5_KIRREL3 Fifth immu 98.8 5.8E-08 1.3E-12 73.4 11.2 88 215-304 2-97 (98)
175 cd05875 Ig6_hNeurofascin_like 98.8 2.6E-08 5.7E-13 72.5 8.9 64 234-299 1-70 (77)
176 cd05734 Ig7_DSCAM Seventh immu 98.8 2.7E-08 5.8E-13 73.3 9.0 68 234-304 1-77 (79)
177 cd05895 Ig_Pro_neuregulin-1 Im 98.8 9.7E-09 2.1E-13 75.0 6.3 70 20-115 1-73 (76)
178 cd05742 Ig1_VEGFR_like First i 98.8 2E-08 4.4E-13 75.0 8.1 76 231-306 1-83 (84)
179 cd04967 Ig1_Contactin First Ig 98.8 4.2E-08 9.1E-13 74.5 9.9 65 231-299 19-86 (91)
180 cd05727 Ig2_Contactin-2-like S 98.8 1.3E-08 2.9E-13 76.0 6.8 77 6-112 7-86 (96)
181 cd05882 Ig1_Necl-1 First (N-te 98.8 1E-07 2.2E-12 72.3 11.7 70 224-293 5-83 (95)
182 KOG4258|consensus 98.8 6.8E-08 1.5E-12 96.9 13.5 132 319-451 496-651 (1025)
183 cd05861 Ig1_PDGFR-alphabeta Fr 98.8 5E-08 1.1E-12 72.5 9.4 77 231-307 1-83 (84)
184 cd05895 Ig_Pro_neuregulin-1 Im 98.8 4E-08 8.6E-13 71.8 8.7 69 234-302 1-74 (76)
185 cd05873 Ig_Sema4D_like Immunog 98.8 7E-08 1.5E-12 71.2 9.8 68 223-295 3-71 (87)
186 cd05754 Ig3_Perlecan_like Thir 98.8 4.7E-08 1E-12 73.2 8.8 78 221-304 6-84 (85)
187 cd05742 Ig1_VEGFR_like First i 98.8 7.3E-09 1.6E-13 77.4 4.2 73 17-115 1-78 (84)
188 cd05753 Ig2_FcgammaR_like Seco 98.8 2.2E-08 4.7E-13 74.1 6.3 67 11-113 8-75 (83)
189 cd05729 Ig2_FGFR_like Second i 98.7 1.5E-07 3.3E-12 70.7 10.6 80 226-305 4-84 (85)
190 cd05729 Ig2_FGFR_like Second i 98.7 5.5E-08 1.2E-12 73.2 8.0 76 11-113 3-78 (85)
191 PHA02826 IL-1 receptor-like pr 98.7 9.2E-07 2E-11 79.1 16.7 157 224-389 30-211 (227)
192 cd05752 Ig1_FcgammaR_like Frst 98.7 7.5E-08 1.6E-12 70.0 7.7 61 223-294 7-68 (78)
193 cd04979 Ig_Semaphorin_C Immuno 98.7 9.7E-08 2.1E-12 72.2 8.4 80 223-307 3-87 (89)
194 smart00408 IGc2 Immunoglobulin 98.7 7.4E-08 1.6E-12 67.6 7.0 63 16-110 1-63 (63)
195 cd00063 FN3 Fibronectin type 3 98.7 4.8E-07 1E-11 69.2 11.8 86 410-496 1-87 (93)
196 cd05757 Ig2_IL1R_like Second i 98.7 1.7E-07 3.7E-12 70.5 8.5 76 226-305 5-85 (92)
197 PF13895 Ig_2: Immunoglobulin 98.6 7.5E-08 1.6E-12 71.5 6.2 69 1-110 1-69 (80)
198 PF00041 fn3: Fibronectin type 98.6 2E-07 4.4E-12 70.0 8.4 81 312-394 2-84 (85)
199 cd05757 Ig2_IL1R_like Second i 98.6 9.3E-08 2E-12 72.0 5.7 71 11-113 4-79 (92)
200 cd05845 Ig2_L1-CAM_like Second 98.6 1.5E-07 3.2E-12 70.3 6.4 78 216-296 3-83 (95)
201 cd07690 Ig1_CD4 First immunogl 98.6 1.4E-07 3.1E-12 70.9 6.2 87 12-112 2-91 (94)
202 cd05717 Ig1_Necl-1-3_like Firs 98.6 4.1E-07 8.9E-12 69.8 8.8 74 9-109 4-85 (95)
203 cd05861 Ig1_PDGFR-alphabeta Fr 98.6 1.7E-07 3.7E-12 69.6 6.2 70 17-110 1-70 (84)
204 cd05717 Ig1_Necl-1-3_like Firs 98.5 1.1E-06 2.4E-11 67.4 10.4 82 223-305 4-94 (95)
205 cd05871 Ig_Semaphorin_classIII 98.5 2.8E-07 6.1E-12 69.4 6.9 64 11-107 5-74 (91)
206 cd05897 Ig2_IL1R2_like Second 98.5 1.7E-07 3.8E-12 70.2 5.1 71 11-110 4-79 (95)
207 cd05871 Ig_Semaphorin_classIII 98.5 1.1E-06 2.5E-11 66.1 9.5 79 225-308 5-90 (91)
208 cd05885 Ig2_Necl-4 Second immu 98.5 3.4E-07 7.4E-12 65.9 6.2 70 19-114 1-71 (80)
209 cd05771 IgC_Tapasin_R Tapasin- 98.5 2.6E-06 5.6E-11 70.7 12.4 115 173-294 2-130 (139)
210 smart00409 IG Immunoglobulin. 98.5 3.2E-06 6.9E-11 63.5 12.0 83 224-306 2-85 (86)
211 smart00410 IG_like Immunoglobu 98.5 3.2E-06 6.9E-11 63.5 12.0 83 224-306 2-85 (86)
212 cd07690 Ig1_CD4 First immunogl 98.5 7.9E-07 1.7E-11 66.9 7.6 72 226-297 2-90 (94)
213 cd05727 Ig2_Contactin-2-like S 98.5 5.3E-07 1.1E-11 67.5 6.6 74 223-298 10-86 (96)
214 smart00408 IGc2 Immunoglobulin 98.4 1.6E-06 3.4E-11 60.6 8.2 63 230-296 1-63 (63)
215 cd05751 Ig1_LILRB1_like First 98.4 6.7E-07 1.5E-11 67.6 6.3 80 2-115 3-83 (91)
216 cd05881 Ig1_Necl-2 First (N-te 98.4 7.4E-06 1.6E-10 61.6 11.4 71 224-294 5-84 (95)
217 cd05753 Ig2_FcgammaR_like Seco 98.4 1.6E-06 3.5E-11 64.1 7.7 64 226-297 9-73 (83)
218 cd05862 Ig1_VEGFR First immuno 98.4 2.2E-06 4.7E-11 63.9 8.1 77 231-307 1-85 (86)
219 smart00410 IG_like Immunoglobu 98.4 2.9E-06 6.3E-11 63.7 8.9 75 9-111 1-76 (86)
220 smart00409 IG Immunoglobulin. 98.4 2.9E-06 6.3E-11 63.7 8.9 75 9-111 1-76 (86)
221 cd05860 Ig4_SCFR Fourth immuno 98.3 7.3E-06 1.6E-10 61.4 10.2 84 224-307 11-100 (101)
222 PF00047 ig: Immunoglobulin do 98.3 1.6E-06 3.5E-11 60.8 6.4 63 17-105 1-64 (64)
223 PF00047 ig: Immunoglobulin do 98.3 2.9E-06 6.3E-11 59.5 7.4 61 231-291 1-64 (64)
224 cd04983 IgV_TCR_alpha_like Imm 98.3 2.6E-06 5.6E-11 67.4 8.0 89 7-110 3-94 (109)
225 cd05872 Ig_Sema4B_like Immunog 98.3 1.3E-06 2.8E-11 63.9 5.3 65 9-106 3-67 (85)
226 PF13895 Ig_2: Immunoglobulin 98.3 5.1E-06 1.1E-10 61.4 8.1 70 226-305 9-79 (80)
227 cd05899 IgV_TCR_beta Immunoglo 98.2 6.6E-06 1.4E-10 65.0 8.5 86 7-109 3-95 (110)
228 smart00060 FN3 Fibronectin typ 98.2 1.4E-05 3.1E-10 59.2 10.1 76 412-491 3-82 (83)
229 KOG4258|consensus 98.2 1.5E-05 3.3E-10 80.6 12.5 138 415-600 493-653 (1025)
230 PF13927 Ig_3: Immunoglobulin 98.2 1.2E-06 2.6E-11 63.9 3.6 74 1-107 1-75 (75)
231 cd05759 Ig2_KIRREL3-like Secon 98.2 5E-06 1.1E-10 61.6 6.7 71 19-112 1-72 (82)
232 cd05881 Ig1_Necl-2 First (N-te 98.2 1.6E-05 3.4E-10 59.8 8.7 80 9-107 4-83 (95)
233 cd05860 Ig4_SCFR Fourth immuno 98.2 1.2E-05 2.6E-10 60.3 7.9 81 9-113 10-92 (101)
234 cd05896 Ig1_IL1RAPL-1_like Fir 98.1 1.6E-05 3.4E-10 59.8 8.3 80 224-305 8-103 (104)
235 cd05897 Ig2_IL1R2_like Second 98.1 1.4E-05 3E-10 60.1 7.7 71 226-298 5-81 (95)
236 cd05872 Ig_Sema4B_like Immunog 98.1 1.6E-05 3.5E-10 58.2 7.8 74 224-303 4-77 (85)
237 cd05862 Ig1_VEGFR First immuno 98.1 9.7E-06 2.1E-10 60.4 6.4 74 17-115 1-79 (86)
238 KOG0613|consensus 98.1 0.00011 2.4E-09 78.6 15.7 260 224-496 342-615 (1205)
239 PF10179 DUF2369: Uncharacteri 98.0 0.0039 8.4E-08 57.3 22.9 217 268-492 11-286 (300)
240 cd04980 IgV_L_kappa Immunoglob 98.0 2.3E-05 5.1E-10 61.4 7.4 84 7-107 5-92 (106)
241 cd04983 IgV_TCR_alpha_like Imm 98.0 6.1E-05 1.3E-09 59.5 9.0 73 223-295 5-93 (109)
242 cd05759 Ig2_KIRREL3-like Secon 97.9 0.0001 2.2E-09 54.6 9.4 65 234-298 2-72 (82)
243 cd04982 IgV_TCR_gamma Immunogl 97.9 3.8E-05 8.3E-10 61.4 7.3 86 7-107 3-98 (116)
244 cd05880 Ig_EVA1 Immunoglobulin 97.9 9.4E-05 2E-09 58.7 9.3 89 8-111 4-104 (115)
245 cd05879 Ig_P0 Immunoglobulin ( 97.9 9.4E-05 2E-09 58.3 9.0 92 9-112 5-106 (116)
246 KOG0613|consensus 97.9 0.00023 4.9E-09 76.3 14.0 323 166-494 387-714 (1205)
247 cd05751 Ig1_LILRB1_like First 97.9 5.3E-05 1.2E-09 57.2 7.0 65 226-294 11-75 (91)
248 cd05899 IgV_TCR_beta Immunoglo 97.9 9.9E-05 2.1E-09 58.3 8.7 71 223-294 5-94 (110)
249 cd05900 Ig_Aggrecan Immunoglob 97.9 0.00015 3.3E-09 56.7 9.5 78 230-307 1-109 (112)
250 KOG4802|consensus 97.9 0.0001 2.2E-09 68.2 9.6 93 454-596 198-293 (516)
251 cd00098 IgC Immunoglobulin Con 97.8 4.6E-05 1E-09 58.4 6.3 31 15-45 11-43 (95)
252 PF13927 Ig_3: Immunoglobulin 97.8 4E-05 8.7E-10 55.7 5.1 58 233-293 17-75 (75)
253 cd04980 IgV_L_kappa Immunoglob 97.8 0.00012 2.5E-09 57.4 7.9 72 223-294 7-93 (106)
254 cd05761 Ig2_Necl-1-4_like Seco 97.8 8.5E-05 1.9E-09 54.8 6.7 25 20-44 2-27 (82)
255 cd05884 Ig2_Necl-3 Second immu 97.8 0.0001 2.2E-09 54.3 7.0 25 20-44 2-27 (83)
256 cd00099 IgV Immunoglobulin var 97.8 0.00011 2.5E-09 57.5 7.8 70 227-296 2-91 (105)
257 cd00099 IgV Immunoglobulin var 97.8 8.3E-05 1.8E-09 58.3 7.0 85 13-110 2-91 (105)
258 cd05715 Ig_P0-like Immunoglobu 97.8 0.0002 4.4E-09 57.1 9.1 93 8-111 4-105 (116)
259 cd05896 Ig1_IL1RAPL-1_like Fir 97.8 7.9E-05 1.7E-09 56.1 6.2 76 10-110 8-94 (104)
260 cd07699 IgC_L Immunoglobulin C 97.8 5.2E-05 1.1E-09 58.2 5.4 44 1-44 1-46 (100)
261 cd05885 Ig2_Necl-4 Second immu 97.8 0.00025 5.5E-09 51.1 8.5 64 234-298 2-69 (80)
262 cd05714 Ig_CSPGs_LP Immunoglob 97.7 0.00038 8.3E-09 54.5 10.2 79 230-308 1-104 (106)
263 cd05741 Ig_CEACAM_D1_like Firs 97.7 0.00012 2.5E-09 55.8 7.0 78 17-110 1-81 (92)
264 cd05877 Ig_LP_like Immunoglobu 97.7 0.00031 6.6E-09 55.1 9.5 78 230-307 1-103 (106)
265 cd05774 Ig_CEACAM_D1 First imm 97.7 0.00018 3.9E-09 55.5 7.8 68 226-296 8-94 (105)
266 cd00063 FN3 Fibronectin type 3 97.7 0.0006 1.3E-08 51.6 10.8 81 312-394 3-85 (93)
267 cd05900 Ig_Aggrecan Immunoglob 97.7 0.00026 5.7E-09 55.3 8.2 29 84-112 72-100 (112)
268 cd07705 Ig2_Necl-1 Second immu 97.7 0.00019 4.2E-09 52.9 7.1 26 19-44 1-27 (83)
269 cd05879 Ig_P0 Immunoglobulin ( 97.7 0.00087 1.9E-08 52.9 11.1 75 223-297 5-105 (116)
270 cd05774 Ig_CEACAM_D1 First imm 97.7 0.00015 3.3E-09 55.9 6.6 83 9-110 5-94 (105)
271 cd04982 IgV_TCR_gamma Immunogl 97.7 0.00024 5.2E-09 56.8 8.0 71 223-293 5-98 (116)
272 cd05755 Ig2_ICAM-1_like Second 97.7 9.2E-05 2E-09 56.0 5.1 51 9-59 8-87 (100)
273 cd05711 Ig_FcalphaRI Immunoglo 97.6 0.00033 7.1E-09 53.2 8.2 73 2-106 2-75 (94)
274 PF07686 V-set: Immunoglobulin 97.6 0.0002 4.3E-09 57.1 7.5 90 8-108 7-101 (114)
275 cd05880 Ig_EVA1 Immunoglobulin 97.6 0.00067 1.4E-08 53.8 10.1 75 223-297 5-104 (115)
276 cd05714 Ig_CSPGs_LP Immunoglob 97.6 0.00023 5E-09 55.8 7.4 78 16-110 1-92 (106)
277 cd05713 Ig_MOG_like Immunoglob 97.6 0.00058 1.2E-08 52.8 9.3 76 231-306 1-99 (100)
278 PF08205 C2-set_2: CD80-like C 97.6 0.00023 5E-09 53.6 6.8 27 17-43 14-41 (89)
279 cd05877 Ig_LP_like Immunoglobu 97.6 0.00028 6E-09 55.3 7.3 85 16-112 1-94 (106)
280 cd04984 IgV_L_lambda Immunoglo 97.6 0.00022 4.7E-09 54.9 6.2 78 13-107 2-84 (98)
281 cd05741 Ig_CEACAM_D1_like Firs 97.6 0.00044 9.6E-09 52.5 7.8 64 231-297 1-82 (92)
282 cd04984 IgV_L_lambda Immunoglo 97.5 0.00037 8E-09 53.6 7.3 67 227-293 2-84 (98)
283 cd07706 IgV_TCR_delta Immunogl 97.5 0.00045 9.7E-09 55.1 7.9 86 7-107 4-93 (116)
284 cd05718 Ig1_PVR_like First imm 97.5 0.00087 1.9E-08 51.6 9.3 75 232-306 1-97 (98)
285 cd05775 Ig_SLAM-CD84_like_N N- 97.5 0.00058 1.3E-08 52.3 8.1 77 230-306 3-96 (97)
286 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.00043 9.3E-09 52.5 7.1 39 1-43 2-42 (93)
287 cd05771 IgC_Tapasin_R Tapasin- 97.5 0.00056 1.2E-08 56.6 8.5 41 1-42 38-80 (139)
288 cd05883 Ig2_Necl-2 Second immu 97.5 0.00031 6.8E-09 50.8 5.9 67 19-110 1-68 (82)
289 cd05878 Ig_Aggrecan_like Immun 97.5 0.0012 2.5E-08 51.9 9.7 77 231-307 2-107 (110)
290 cd05712 Ig_Siglec_N Immunoglob 97.5 0.00068 1.5E-08 54.3 8.5 87 7-107 4-101 (119)
291 cd05775 Ig_SLAM-CD84_like_N N- 97.5 0.00036 7.8E-09 53.4 6.2 80 15-111 2-86 (97)
292 cd05878 Ig_Aggrecan_like Immun 97.4 0.00077 1.7E-08 52.9 7.7 29 84-112 70-98 (110)
293 PHA02987 Ig domain OX-2-like p 97.4 0.00048 1E-08 57.5 6.7 83 9-106 22-105 (189)
294 PHA03376 BARF1; Provisional 97.4 0.0073 1.6E-07 50.2 13.2 79 170-255 85-163 (221)
295 cd05715 Ig_P0-like Immunoglobu 97.4 0.0017 3.7E-08 51.7 9.6 75 223-297 5-105 (116)
296 cd05713 Ig_MOG_like Immunoglob 97.4 0.0007 1.5E-08 52.4 7.1 27 85-111 64-90 (100)
297 PHA02987 Ig domain OX-2-like p 97.4 0.0018 3.9E-08 54.1 9.6 85 224-308 23-123 (189)
298 cd05711 Ig_FcalphaRI Immunoglo 97.4 0.00083 1.8E-08 51.0 7.1 68 225-293 9-76 (94)
299 smart00407 IGc1 Immunoglobulin 97.3 0.0011 2.4E-08 47.8 7.3 26 19-44 1-28 (75)
300 cd05769 IgC_TCR_beta T cell re 97.3 0.00048 1E-08 53.9 5.1 44 1-44 2-47 (115)
301 cd07700 IgV_CD8_beta Immunoglo 97.2 0.0016 3.5E-08 50.9 7.5 89 12-106 1-92 (107)
302 cd05902 Ig_Neurocan Immunoglob 97.2 0.0043 9.4E-08 48.3 9.4 77 231-307 2-107 (110)
303 cd05768 IgC_CH4 CH4 domain (fo 97.2 0.00058 1.2E-08 52.6 4.5 43 2-44 1-45 (102)
304 cd05772 IgC_SIRP Signal-regula 97.2 0.0024 5.3E-08 49.8 8.0 34 11-44 15-50 (111)
305 cd05716 Ig_pIgR Immunoglobulin 97.2 0.001 2.2E-08 51.2 5.9 83 12-109 2-87 (98)
306 COG3401 Fibronectin type 3 dom 97.2 0.032 6.9E-07 51.3 15.9 160 324-497 83-247 (343)
307 cd04981 IgV_H Immunoglobulin ( 97.2 0.0027 5.8E-08 50.6 8.4 88 8-107 3-97 (117)
308 cd05901 Ig_Versican Immunoglob 97.2 0.0078 1.7E-07 47.0 10.6 38 270-307 77-114 (117)
309 cd05888 Ig1_Nectin-4_like Frst 97.2 0.0041 8.9E-08 47.9 9.1 74 233-306 2-99 (100)
310 cd07706 IgV_TCR_delta Immunogl 97.2 0.0026 5.6E-08 50.7 8.2 71 223-293 6-93 (116)
311 PF07686 V-set: Immunoglobulin 97.1 0.0022 4.7E-08 51.0 7.7 72 223-294 8-101 (114)
312 cd05887 Ig1_Nectin-3_like Firs 97.1 0.0059 1.3E-07 46.1 9.3 74 233-306 2-95 (96)
313 cd05846 Ig1_MRC-OX-2_like Firs 97.1 0.0034 7.3E-08 48.1 8.1 76 231-306 1-96 (97)
314 KOG4152|consensus 97.1 0.0041 9E-08 59.8 10.1 123 369-495 650-789 (830)
315 smart00060 FN3 Fibronectin typ 97.1 0.0047 1E-07 45.1 8.7 72 317-391 7-82 (83)
316 KOG4367|consensus 97.1 0.00057 1.2E-08 63.6 4.2 79 422-503 451-530 (699)
317 KOG4152|consensus 97.1 0.001 2.2E-08 63.8 5.6 75 471-595 652-726 (830)
318 cd05712 Ig_Siglec_N Immunoglob 97.0 0.0059 1.3E-07 48.8 9.0 73 222-294 5-102 (119)
319 cd05766 IgC_MHC_II_beta Class 97.0 0.0029 6.3E-08 47.9 6.7 30 15-44 12-43 (94)
320 cd05716 Ig_pIgR Immunoglobulin 97.0 0.0053 1.1E-07 47.2 8.1 69 226-294 2-86 (98)
321 KOG3632|consensus 96.9 0.0022 4.8E-08 66.4 7.1 222 317-595 584-813 (1335)
322 COG4733 Phage-related protein, 96.9 0.032 7E-07 57.5 15.1 138 354-496 648-787 (952)
323 cd07700 IgV_CD8_beta Immunoglo 96.9 0.0044 9.5E-08 48.5 7.4 67 227-293 2-93 (107)
324 cd05902 Ig_Neurocan Immunoglob 96.9 0.003 6.5E-08 49.2 6.3 78 17-109 2-95 (110)
325 cd05720 Ig_CD8_alpha Immunoglo 96.9 0.0041 8.8E-08 48.3 7.1 66 228-293 3-90 (104)
326 cd05720 Ig_CD8_alpha Immunoglo 96.9 0.0029 6.3E-08 49.1 6.2 87 13-106 2-89 (104)
327 cd05886 Ig1_Nectin-1_like Firs 96.9 0.015 3.4E-07 44.3 9.9 36 271-306 62-98 (99)
328 cd05883 Ig2_Necl-2 Second immu 96.9 0.012 2.7E-07 42.6 8.7 62 234-295 2-67 (82)
329 cd00098 IgC Immunoglobulin Con 96.9 0.0052 1.1E-07 46.9 7.3 68 229-296 11-86 (95)
330 cd05718 Ig1_PVR_like First imm 96.8 0.0041 8.9E-08 47.8 6.7 77 18-107 1-83 (98)
331 PF10179 DUF2369: Uncharacteri 96.8 0.4 8.7E-06 44.4 23.6 114 272-391 128-285 (300)
332 cd05721 IgV_CTLA-4 Immunoglobu 96.8 0.007 1.5E-07 46.6 7.5 83 8-106 4-94 (115)
333 cd07705 Ig2_Necl-1 Second immu 96.8 0.018 3.9E-07 42.4 9.5 62 234-296 2-70 (83)
334 cd05846 Ig1_MRC-OX-2_like Firs 96.8 0.0045 9.8E-08 47.4 6.4 25 83-107 58-82 (97)
335 cd07694 Ig2_CD4 Second immunog 96.8 0.017 3.6E-07 41.9 8.6 64 225-294 8-73 (88)
336 cd07692 Ig_CD3_epsilon Immunog 96.7 0.0012 2.6E-08 44.6 2.5 38 15-55 5-55 (65)
337 cd05847 IgC_CH2_IgE CH2 domain 96.7 0.0071 1.5E-07 45.6 6.9 30 15-44 12-43 (94)
338 cd05761 Ig2_Necl-1-4_like Seco 96.7 0.014 3.1E-07 42.9 8.3 64 234-297 2-70 (82)
339 TIGR00864 PCC polycystin catio 96.6 2.6 5.5E-05 51.1 38.8 189 89-310 1663-1867(2740)
340 cd07704 Ig2_Nectin-3-4_like Se 96.6 0.0079 1.7E-07 45.2 6.5 39 2-40 1-41 (97)
341 PF07654 C1-set: Immunoglobuli 96.6 0.0072 1.6E-07 44.6 6.3 30 15-44 6-37 (83)
342 cd05770 IgC_beta2m Class I maj 96.6 0.0077 1.7E-07 45.2 6.3 31 14-44 12-44 (93)
343 cd05884 Ig2_Necl-3 Second immu 96.6 0.016 3.6E-07 42.5 7.8 62 234-295 2-69 (83)
344 PHA03376 BARF1; Provisional 96.6 0.018 3.9E-07 48.0 8.6 74 225-298 20-113 (221)
345 cd05767 IgC_MHC_II_alpha Class 96.6 0.0088 1.9E-07 45.1 6.4 30 15-44 13-44 (94)
346 cd05888 Ig1_Nectin-4_like Frst 96.5 0.015 3.3E-07 44.7 7.8 27 84-110 62-89 (100)
347 cd07697 IgC_TCR_gamma T cell r 96.5 0.0099 2.1E-07 44.9 6.5 37 8-44 7-45 (96)
348 PF01108 Tissue_fac: Tissue fa 96.5 0.013 2.9E-07 45.7 7.3 83 408-493 20-106 (107)
349 cd07696 IgC_CH3 CH3 domain (th 96.4 0.0093 2E-07 45.2 6.0 35 8-42 5-42 (96)
350 cd05901 Ig_Versican Immunoglob 96.4 0.017 3.8E-07 45.1 7.5 30 84-113 77-106 (117)
351 cd04981 IgV_H Immunoglobulin ( 96.4 0.02 4.3E-07 45.6 7.9 70 224-293 5-97 (117)
352 cd00096 Ig Immunoglobulin doma 96.4 0.016 3.4E-07 40.9 6.8 61 235-295 2-66 (74)
353 cd04986 IgC_CH2 CH2 domain (se 96.3 0.007 1.5E-07 45.8 4.6 42 1-42 3-47 (99)
354 cd05755 Ig2_ICAM-1_like Second 96.3 0.021 4.6E-07 43.3 7.1 70 227-297 12-87 (100)
355 smart00406 IGv Immunoglobulin 96.3 0.011 2.3E-07 43.5 5.3 22 83-104 59-80 (81)
356 cd07691 Ig_CD3_gamma_delta Imm 96.2 0.0057 1.2E-07 41.7 3.1 35 17-55 6-54 (69)
357 PF09294 Interfer-bind: Interf 96.2 0.011 2.4E-07 46.1 5.4 69 416-486 8-87 (106)
358 cd05719 Ig2_PVR_like Second im 96.2 0.019 4.1E-07 43.4 6.3 37 2-39 1-38 (95)
359 cd00096 Ig Immunoglobulin doma 96.1 0.021 4.5E-07 40.2 6.2 66 20-109 1-66 (74)
360 cd05886 Ig1_Nectin-1_like Firs 96.0 0.038 8.2E-07 42.2 7.4 28 83-110 60-88 (99)
361 cd05889 Ig1_DNAM-1_like First 96.0 0.095 2.1E-06 39.6 9.3 70 233-302 2-91 (96)
362 cd07703 Ig2_Nectin-2_like Seco 96.0 0.03 6.5E-07 42.2 6.4 30 10-39 6-38 (95)
363 cd05889 Ig1_DNAM-1_like First 95.9 0.039 8.5E-07 41.7 7.0 77 18-107 1-81 (96)
364 cd05772 IgC_SIRP Signal-regula 95.7 0.17 3.6E-06 39.6 9.9 66 227-294 17-91 (111)
365 cd07698 IgC_MHC_I_alpha3 Class 95.7 0.089 1.9E-06 39.8 8.2 64 231-294 14-82 (93)
366 smart00406 IGv Immunoglobulin 95.6 0.048 1E-06 39.9 6.6 57 234-290 2-80 (81)
367 cd05887 Ig1_Nectin-3_like Firs 95.6 0.038 8.3E-07 41.8 5.8 29 83-111 57-86 (96)
368 cd07694 Ig2_CD4 Second immunog 95.6 0.056 1.2E-06 39.3 6.2 62 11-106 8-71 (88)
369 cd07692 Ig_CD3_epsilon Immunog 95.4 0.039 8.4E-07 37.5 4.7 51 229-293 5-55 (65)
370 cd04985 IgC_CH1 CH1 domain (fi 95.4 0.053 1.2E-06 41.0 6.0 41 1-42 1-43 (95)
371 KOG4367|consensus 95.2 0.019 4.1E-07 53.9 3.6 73 322-395 450-522 (699)
372 cd07699 IgC_L Immunoglobulin C 94.8 0.082 1.8E-06 40.5 5.7 31 228-258 14-46 (100)
373 smart00407 IGc1 Immunoglobulin 94.8 0.26 5.7E-06 35.3 7.9 61 234-294 2-70 (75)
374 KOG4228|consensus 94.6 0.16 3.4E-06 54.8 8.8 101 286-394 1-101 (1087)
375 COG3401 Fibronectin type 3 dom 94.6 2.6 5.6E-05 39.3 15.3 205 275-493 127-333 (343)
376 PF08205 C2-set_2: CD80-like C 94.6 0.38 8.2E-06 35.9 8.8 66 231-296 14-85 (89)
377 cd07689 Ig2_VCAM-1 Second immu 94.5 0.12 2.5E-06 38.7 5.4 39 1-43 3-44 (99)
378 cd07697 IgC_TCR_gamma T cell r 94.3 0.15 3.3E-06 38.6 5.9 30 230-259 15-46 (96)
379 cd05767 IgC_MHC_II_alpha Class 94.2 0.34 7.4E-06 36.5 7.6 29 231-259 15-45 (94)
380 TIGR00864 PCC polycystin catio 94.1 20 0.00043 44.2 35.2 342 11-392 1706-2116(2740)
381 cd05766 IgC_MHC_II_beta Class 94.0 0.37 8.1E-06 36.4 7.6 30 230-259 13-44 (94)
382 PHA02982 hypothetical protein; 93.9 1.4 3E-05 37.8 11.1 119 225-361 33-171 (251)
383 cd05770 IgC_beta2m Class I maj 93.7 0.37 7.9E-06 36.2 7.0 63 230-293 14-81 (93)
384 cd07691 Ig_CD3_gamma_delta Imm 92.9 0.47 1E-05 32.6 5.7 49 231-293 6-54 (69)
385 PF07654 C1-set: Immunoglobuli 92.7 0.87 1.9E-05 33.4 7.7 62 231-295 8-77 (83)
386 KOG3632|consensus 92.6 1.2 2.6E-05 47.4 10.8 198 284-493 644-857 (1335)
387 cd05721 IgV_CTLA-4 Immunoglobu 92.4 0.95 2.1E-05 35.2 7.6 67 225-291 7-93 (115)
388 cd05768 IgC_CH4 CH4 domain (fo 92.1 0.51 1.1E-05 36.3 5.9 30 230-259 15-46 (102)
389 PF01108 Tissue_fac: Tissue fa 91.6 1.5 3.2E-05 34.1 8.2 72 317-391 28-104 (107)
390 cd05769 IgC_TCR_beta T cell re 91.5 0.84 1.8E-05 35.9 6.6 33 228-260 15-49 (115)
391 PF07495 Y_Y_Y: Y_Y_Y domain; 91.1 0.46 1E-05 33.0 4.4 46 444-493 10-55 (66)
392 cd05719 Ig2_PVR_like Second im 90.9 2.2 4.7E-05 32.3 8.1 62 233-297 17-84 (95)
393 PF09067 EpoR_lig-bind: Erythr 90.7 0.78 1.7E-05 35.2 5.6 81 409-491 7-95 (104)
394 PHA03270 envelope glycoprotein 90.5 18 0.00039 35.2 15.3 80 172-258 182-264 (466)
395 cd07703 Ig2_Nectin-2_like Seco 90.5 1.9 4E-05 32.6 7.4 66 233-299 17-86 (95)
396 cd05847 IgC_CH2_IgE CH2 domain 90.3 1.4 3E-05 33.2 6.6 64 231-294 14-85 (94)
397 cd07696 IgC_CH3 CH3 domain (th 90.0 1.9 4.2E-05 32.6 7.2 29 228-256 11-42 (96)
398 KOG1480|consensus 89.9 0.18 3.9E-06 51.8 1.9 54 6-59 133-208 (909)
399 KOG4597|consensus 89.6 0.88 1.9E-05 44.1 6.1 87 220-306 200-291 (560)
400 PF06328 Lep_receptor_Ig: Ig-l 89.4 2.8 6.1E-05 31.1 7.4 42 9-51 10-56 (89)
401 cd07704 Ig2_Nectin-3-4_like Se 89.1 3.5 7.7E-05 31.1 7.8 70 224-294 9-83 (97)
402 KOG4806|consensus 89.0 20 0.00044 33.7 15.4 118 370-492 288-436 (454)
403 PHA03271 envelope glycoprotein 88.2 26 0.00057 33.9 14.6 83 170-258 205-290 (490)
404 KOG4806|consensus 88.1 22 0.00048 33.5 13.5 110 277-391 289-435 (454)
405 PHA03042 CD47-like protein; Pr 88.0 0.95 2.1E-05 40.6 4.8 41 17-57 31-93 (286)
406 PF06328 Lep_receptor_Ig: Ig-l 87.9 4.8 0.0001 29.9 7.8 66 224-291 11-81 (89)
407 PHA02633 hypothetical protein; 87.2 1.9 4.2E-05 28.9 4.7 38 272-309 18-55 (63)
408 PHA02982 hypothetical protein; 87.0 2.7 5.9E-05 36.0 6.7 90 11-114 33-128 (251)
409 cd04986 IgC_CH2 CH2 domain (se 86.6 2.1 4.5E-05 32.6 5.4 29 228-256 16-47 (99)
410 PF08204 V-set_CD47: CD47 immu 86.1 0.97 2.1E-05 36.0 3.5 28 16-43 26-58 (130)
411 KOG4597|consensus 85.7 0.63 1.4E-05 45.0 2.7 32 7-38 201-232 (560)
412 TIGR00868 hCaCC calcium-activa 85.6 63 0.0014 35.7 24.9 86 409-496 755-860 (863)
413 PF07354 Sp38: Zona-pellucida- 85.5 1.3 2.8E-05 39.7 4.3 46 245-293 12-58 (271)
414 PF06832 BiPBP_C: Penicillin-B 85.1 3.7 8E-05 30.6 6.2 37 19-56 31-80 (89)
415 PF11465 Receptor_2B4: Natural 85.1 8.5 0.00018 29.3 7.7 71 234-306 30-106 (108)
416 PF07495 Y_Y_Y: Y_Y_Y domain; 83.1 5.5 0.00012 27.5 6.0 38 354-393 18-55 (66)
417 PHA03269 envelope glycoprotein 82.9 54 0.0012 32.7 16.4 84 169-259 286-373 (566)
418 PF08204 V-set_CD47: CD47 immu 81.9 3.6 7.9E-05 32.9 5.1 78 228-306 24-119 (130)
419 cd04985 IgC_CH1 CH1 domain (fi 81.9 9.2 0.0002 28.9 7.1 27 230-256 15-43 (95)
420 PF09067 EpoR_lig-bind: Erythr 81.0 11 0.00024 29.0 7.4 78 310-391 8-95 (104)
421 PLN02533 probable purple acid 81.0 6.8 0.00015 39.4 8.0 71 408-484 39-121 (427)
422 PHA03052 Hypothetical protein; 79.5 4.7 0.0001 27.5 4.1 35 9-43 4-41 (69)
423 PF09294 Interfer-bind: Interf 79.3 8.3 0.00018 29.8 6.5 69 317-386 8-87 (106)
424 KOG1480|consensus 77.8 1 2.2E-05 46.7 1.0 55 135-199 156-210 (909)
425 cd07689 Ig2_VCAM-1 Second immu 77.5 13 0.00029 28.1 6.5 66 228-294 12-85 (99)
426 PF09240 IL6Ra-bind: Interleuk 76.4 31 0.00068 26.2 9.1 78 413-492 2-87 (99)
427 PF14292 SusE: SusE outer memb 73.4 33 0.00072 27.3 8.6 69 418-486 39-121 (122)
428 PHA03042 CD47-like protein; Pr 71.4 29 0.00064 31.6 8.2 70 228-304 28-102 (286)
429 PF02010 REJ: REJ domain; Int 70.3 4.1 8.8E-05 41.5 3.3 21 372-392 268-288 (440)
430 PHA03273 envelope glycoprotein 69.9 1.2E+02 0.0027 30.2 15.7 80 172-258 198-280 (486)
431 PHA03052 Hypothetical protein; 69.6 25 0.00055 24.1 5.7 34 224-257 5-41 (69)
432 KOG1225|consensus 68.5 14 0.00031 37.6 6.4 110 363-483 415-524 (525)
433 COG4733 Phage-related protein, 61.6 2.4E+02 0.0053 30.7 15.4 121 271-394 659-785 (952)
434 PHA02865 MHC-like TNF binding 60.9 35 0.00076 32.5 7.1 21 19-39 216-238 (338)
435 PF06832 BiPBP_C: Penicillin-B 59.3 70 0.0015 23.6 8.0 56 233-300 31-86 (89)
436 PRK14081 triple tyrosine motif 57.7 2.7E+02 0.0058 29.8 26.1 244 225-492 395-654 (667)
437 cd05890 Ig2_Nectin-1_like Seco 53.9 24 0.00052 26.3 3.8 21 18-38 21-42 (98)
438 PHA02633 hypothetical protein; 51.8 19 0.00042 24.3 2.7 25 171-195 17-41 (63)
439 PF11465 Receptor_2B4: Natural 49.9 27 0.00059 26.7 3.6 30 168-197 67-96 (108)
440 KOG1948|consensus 49.2 4E+02 0.0086 29.3 15.5 97 135-245 918-1014(1165)
441 PF02010 REJ: REJ domain; Int 48.3 5.9 0.00013 40.3 0.0 170 172-349 148-340 (440)
442 PHA03189 UL14 tegument protein 46.6 42 0.00091 31.0 4.9 25 9-33 59-83 (348)
443 KOG1225|consensus 45.2 49 0.0011 33.9 5.8 120 412-595 368-489 (525)
444 PHA02914 Immunoglobulin-like d 44.3 1E+02 0.0023 29.9 7.3 92 7-108 269-368 (500)
445 PF07354 Sp38: Zona-pellucida- 43.1 39 0.00085 30.7 4.2 22 85-106 36-57 (271)
446 PLN02533 probable purple acid 42.8 93 0.002 31.5 7.4 19 366-384 103-121 (427)
447 PF03921 ICAM_N: Intercellular 41.8 1.5E+02 0.0032 22.2 9.1 81 223-311 10-90 (91)
448 KOG1948|consensus 41.6 5.2E+02 0.011 28.5 16.9 22 271-292 945-966 (1165)
449 PF11344 DUF3146: Protein of u 40.2 23 0.00049 24.8 1.8 15 472-486 66-80 (80)
450 PF10342 GPI-anchored: Ser-Thr 39.1 1.6E+02 0.0034 21.8 7.3 59 423-485 12-78 (93)
451 PF00801 PKD: PKD domain; Int 38.8 48 0.001 22.9 3.5 28 12-40 6-34 (69)
452 PHA02914 Immunoglobulin-like d 37.8 1.1E+02 0.0023 29.8 6.3 120 224-361 272-418 (500)
453 PHA03270 envelope glycoprotein 37.5 1.7E+02 0.0036 29.0 7.6 41 1-44 221-264 (466)
454 TIGR03000 plancto_dom_1 Planct 34.7 82 0.0018 22.4 3.8 25 462-486 25-49 (75)
455 PHA03273 envelope glycoprotein 34.2 55 0.0012 32.5 4.0 41 1-44 237-280 (486)
456 PF11049 KSHV_K1: Glycoprotein 33.8 36 0.00077 23.2 1.9 33 21-55 2-45 (71)
457 PHA03240 envelope glycoprotein 32.8 48 0.001 28.8 3.0 28 11-38 32-59 (258)
458 PF07353 Uroplakin_II: Uroplak 32.8 65 0.0014 26.6 3.5 24 465-488 101-124 (184)
459 PHA03271 envelope glycoprotein 32.3 61 0.0013 31.6 3.9 34 11-44 254-290 (490)
460 PHA03189 UL14 tegument protein 31.0 3.2E+02 0.0069 25.7 7.9 74 223-296 59-157 (348)
461 PHA02865 MHC-like TNF binding 29.8 1.8E+02 0.004 27.9 6.5 21 233-253 216-238 (338)
462 KOG4228|consensus 29.7 93 0.002 34.8 5.2 109 381-503 2-110 (1087)
463 KOG1026|consensus 28.9 61 0.0013 34.9 3.6 33 12-44 202-234 (774)
464 PHA03286 envelope glycoprotein 28.6 2.2E+02 0.0048 28.4 6.9 32 170-201 125-156 (492)
465 PHA03269 envelope glycoprotein 28.6 74 0.0016 31.8 3.8 34 11-44 336-372 (566)
466 TIGR00868 hCaCC calcium-activa 26.8 4.6E+02 0.01 29.3 9.8 38 559-596 755-795 (863)
467 PHA03112 IL-18 binding protein 26.8 74 0.0016 25.9 3.0 29 12-40 33-63 (141)
468 PHA02579 7 baseplate wedge sub 23.3 1.9E+02 0.004 31.0 5.7 71 409-486 4-85 (1030)
469 TIGR03096 nitroso_cyanin nitro 23.0 2.4E+02 0.0052 23.0 5.2 18 8-25 59-76 (135)
470 PF09423 PhoD: PhoD-like phosp 21.9 1.5E+02 0.0032 30.4 5.0 21 86-106 64-84 (453)
471 PHA03112 IL-18 binding protein 21.2 4.2E+02 0.009 21.8 6.1 68 229-296 36-120 (141)
472 PF13754 Big_3_4: Bacterial Ig 21.2 2.4E+02 0.0051 18.5 4.1 28 467-495 15-42 (54)
473 PF14292 SusE: SusE outer memb 20.6 1.9E+02 0.0041 23.0 4.4 32 568-599 42-73 (122)
474 PF09423 PhoD: PhoD-like phosp 20.4 86 0.0019 32.1 2.9 21 465-485 63-83 (453)
475 PF08329 ChitinaseA_N: Chitina 20.1 4.6E+02 0.01 21.3 6.2 65 322-393 35-99 (133)
No 1
>KOG3513|consensus
Probab=100.00 E-value=3.7e-57 Score=457.51 Aligned_cols=530 Identities=20% Similarity=0.295 Sum_probs=414.2
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCe-eee-------------e-------ccceEEEeecCCCC
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGN-PLN-------------L-------RPIWEKCAQTEGDT 59 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~-~l~-------------~-------~G~Y~C~a~n~~~~ 59 (616)
+|+|-...|+......|+.|.|.|.|.|+|.|+|.|.|.|+ +++ + +|.|+|.|+|..|.
T Consensus 240 ~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~ 319 (1051)
T KOG3513|consen 240 APKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS 319 (1051)
T ss_pred CCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccc
Confidence 68898888889999999999999999999999999999887 332 1 99999999999887
Q ss_pred ------------------Cc-------e-eEeeeccCCccc----eeeccccC----------CCCCceEecCcccCCeE
Q psy12426 60 ------------------PK-------G-KVLDLIEGNHPI----WEKCAQTE----------GDTPKGKVLDLIEGNQY 99 (616)
Q Consensus 60 ------------------~~-------~-~v~~~~~~~~p~----w~~~~~~~----------~~~~~l~i~~l~~~~~~ 99 (616)
++ . ...+|.+.|.|. |++++.+. +..+.|.|.+|++.|+|
T Consensus 320 ~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg 399 (1051)
T KOG3513|consen 320 ATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSG 399 (1051)
T ss_pred ceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCe
Confidence 11 1 344665557777 99999773 34577999999999999
Q ss_pred EEEEEEEcCCCCCCCCCCCCcceeecCC---Cce--------------eeeecCcccccEEEEeeccCcccccccCCCce
Q psy12426 100 EFRVLAVNKGGPGEPSDPTAPHIARAKK---GKC--------------YHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWE 162 (616)
Q Consensus 100 ~y~c~a~n~~g~~~~~~~~~~~~~~~~~---p~~--------------~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (616)
.|+|.|.|..|...+++...+....... |.. .++.+.|.+.|.|.+ .++. ...+...
T Consensus 400 ~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k--~~~~----~~~~~r~ 473 (1051)
T KOG3513|consen 400 VYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLK--GGEK----LLQSGRI 473 (1051)
T ss_pred EEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEc--CCcc----cccCceE
Confidence 9999999999999888433322221111 111 112289999999999 5221 1111111
Q ss_pred EecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEee
Q psy12426 163 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG 242 (616)
Q Consensus 163 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~ 242 (616)
. . ..+.+|.|.+++.+|.|.|+|.|.|..|..... ..+.+ ..++.|. ..+....+..|+.+.|.|++..
T Consensus 474 ~--i--~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~---~~L~V---kd~tri~-~~P~~~~v~~g~~v~l~Ce~sh 542 (1051)
T KOG3513|consen 474 R--I--LEDGTLEISNVTRSDAGKYTCVAENKLGKAEST---GNLIV---KDATRIT-LAPSNTDVKVGESVTLTCEASH 542 (1051)
T ss_pred E--E--CCCCcEEecccCcccCcEEEEEEEcccCccceE---EEEEE---ecCceEE-eccchhhhccCceEEEEeeccc
Confidence 1 1 244589999999999999999999999986532 12222 2556664 4788899999999999999997
Q ss_pred ecCc--eeEEEECCeeecc---cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCc
Q psy12426 243 EPIP--TKEWLCNDITIIS---KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPL 317 (616)
Q Consensus 243 ~p~~--~~~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~ 317 (616)
.+.. .+.|.+||..+.. ...+......+...|+|.+++..+.|.|.|.|.....+.+..+.+.|..+|.+|.. +
T Consensus 543 D~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~-v 621 (1051)
T KOG3513|consen 543 DPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPD-V 621 (1051)
T ss_pred CCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCc-e
Confidence 7654 7899999997643 34444443332357999999999999999999998888888999999999999997 8
Q ss_pred cceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccc-----cceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426 318 KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS-----GTYTRAENLIEGHDYNFRVKAVNKIGES 392 (616)
Q Consensus 318 ~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~-----~~~~~i~~L~~~~~y~~~v~a~n~~g~~ 392 (616)
.+..+....+.|+|++..+ +.++|..|.|+.+......|....... ..+.++.+|.|...|+|||.|.|..|.|
T Consensus 622 ~~~~i~~t~~~lsW~~g~d-n~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~g 700 (1051)
T KOG3513|consen 622 HVDDISDTTARLSWSPGSD-NNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIG 700 (1051)
T ss_pred eEeeeccceEEEEeecCCC-CCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccC
Confidence 8999999999999996554 456799999999988888898775411 1346788999999999999999999999
Q ss_pred CCccccCCEEccCCCCCC-CCCCCCEEEEecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCC--CceEeEeecCCccEE
Q psy12426 393 LPLVCQSPITAKDPFGRP-DRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYG--PWEKACIVPANITAT 468 (616)
Q Consensus 393 ~~~~~s~~~~~~~~~~~p-~~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~ 468 (616)
+++.+|..+... +++| ..|.++.......+.+.|.|++.. ...+++-.+|+|.|+..+. .|......+.+...+
T Consensus 701 ePS~pS~~~rT~--ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~ 778 (1051)
T KOG3513|consen 701 EPSPPSEKVRTP--EAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRY 778 (1051)
T ss_pred CCCCCccceecC--CCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceE
Confidence 999888776643 4444 457788888888999999999744 3445678899999999887 798887776655666
Q ss_pred EcC--CCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccc
Q psy12426 469 SVP--DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKS 546 (616)
Q Consensus 469 ~l~--~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 546 (616)
.+. ...|.+.|.++|+|+|..|.|+.|........+
T Consensus 779 V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~E------------------------------------------ 816 (1051)
T KOG3513|consen 779 VVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGE------------------------------------------ 816 (1051)
T ss_pred EEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCC------------------------------------------
Confidence 654 456699999999999999999877654433322
Q ss_pred eeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCC
Q psy12426 547 MVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG 601 (616)
Q Consensus 547 ~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~ 601 (616)
..++.+|..+.+...+.+.+.|+|++|..+ ||.+++|+|+|...++.
T Consensus 817 -------d~P~~ap~~~~~~~~s~s~~~v~W~~~~~~-nG~l~gY~v~Y~~~~~~ 863 (1051)
T KOG3513|consen 817 -------DEPPVAPTKLSAKPLSSSEVNLSWKPPLWD-NGKLTGYEVKYWKINEK 863 (1051)
T ss_pred -------CCCCCCCccceeecccCceEEEEecCcCcc-CCccceeEEEEEEcCCC
Confidence 245788999999999999999999998766 69999999999977655
No 2
>KOG3513|consensus
Probab=100.00 E-value=2e-55 Score=444.98 Aligned_cols=473 Identities=20% Similarity=0.299 Sum_probs=348.2
Q ss_pred eEeeeccCCccc----eeeccccCC--------CCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcc---------
Q psy12426 63 KVLDLIEGNHPI----WEKCAQTEG--------DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH--------- 121 (616)
Q Consensus 63 ~v~~~~~~~~p~----w~~~~~~~~--------~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~--------- 121 (616)
..++|.+.|.|. |.+.+.... -...|.|.+++.+|+|.|+|.|.|..|.........+.
T Consensus 259 v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~ 338 (1051)
T KOG3513|consen 259 VKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKP 338 (1051)
T ss_pred EEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhccc
Confidence 344777778877 999877422 23679999999999999999999999955443111110
Q ss_pred -eeecCCCceee----eecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCC
Q psy12426 122 -IARAKKGKCYH----LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG 196 (616)
Q Consensus 122 -~~~~~~p~~~~----~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g 196 (616)
.+.+..-.++. ..|.|.+.|+|++ ++-+++ ...+..+ ..-....|+|.+|+..|+|.|+|.|.|.+|
T Consensus 339 ~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk--Ng~pl~---~~~r~~~---~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G 410 (1051)
T KOG3513|consen 339 QDTEADTGSNVTLECKASGKPNPTVKWLK--NGEPLE---PAERDPR---YKIDDGTLIISNVQESDSGVYQCIAENKYG 410 (1051)
T ss_pred ceeEecCCCCeEEEEEecCCCCCceEEee--CCeecC---ccCCCcc---eEEeCCEEEEEecccccCeEEEeeeecccc
Confidence 01111111222 3399999999999 533433 1111111 112334899999999999999999999999
Q ss_pred CCCCCCCCCCEEeccccCCCceeccCC-cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEE
Q psy12426 197 PGEPSDPTAPHIARAKKVSPYINRDQL-SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275 (616)
Q Consensus 197 ~~~~s~~~~~~~~~~~~~~P~~~~~~~-~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~ 275 (616)
....+ ..++....+|.|..... ..+.+..|.++.+.|...+.|.+.++|.+++..+..+.|+.+..++ +|.
T Consensus 411 ~i~an-----A~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG---tL~ 482 (1051)
T KOG3513|consen 411 TIYAN-----AELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG---TLE 482 (1051)
T ss_pred eEeee-----eEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC---cEE
Confidence 86644 33333345676653333 3367889999999999999999999999999988888999998887 999
Q ss_pred ecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEE--E---
Q psy12426 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEK--M--- 350 (616)
Q Consensus 276 i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~--~--- 350 (616)
|.+++.+|.|.|+|.|.|..|.......|.|.+++..-..|.......+..+.|.|+...+..- ...|.+.. +
T Consensus 483 I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~l--d~~f~W~~nG~~id 560 (1051)
T KOG3513|consen 483 ISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSL--DITFTWKKNGRPID 560 (1051)
T ss_pred ecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCc--ceEEEEEECCEEhh
Confidence 9999999999999999999999999999999998876555555556678899999997544322 12222211 1
Q ss_pred -eCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEE
Q psy12426 351 -DMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 429 (616)
Q Consensus 351 -~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~ 429 (616)
.................+++.++.-.+.+.|.|.+......... ...+.+. ++|.+|.++++..++.+++.|+
T Consensus 561 ~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~---~A~l~V~---gpPgpP~~v~~~~i~~t~~~ls 634 (1051)
T KOG3513|consen 561 FNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASA---RADLLVR---GPPGPPPDVHVDDISDTTARLS 634 (1051)
T ss_pred ccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhc---ccceEEe---cCCCCCCceeEeeeccceEEEE
Confidence 01112222222222245777766555555666666554333221 2334443 7888999999999999999999
Q ss_pred ecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCcc---EEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426 430 WTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANIT---ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505 (616)
Q Consensus 430 W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~---~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~ 505 (616)
|.+ ..+++++|.+|.|+.+.... .|.....+++... +.++-+|.|...|+|||.|+|..|.|++|.++...++.+
T Consensus 635 W~~-g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~e 713 (1051)
T KOG3513|consen 635 WSP-GSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPE 713 (1051)
T ss_pred eec-CCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCC
Confidence 995 55677789999999998866 9998887766554 577889999999999999999999999999999888765
Q ss_pred CcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeC-CCCCC
Q psy12426 506 RFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQ-PISNG 584 (616)
Q Consensus 506 ~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~-p~~~~ 584 (616)
. .+-.+|.++.......+.+.|+|+| +...+
T Consensus 714 a------------------------------------------------~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~q 745 (1051)
T KOG3513|consen 714 A------------------------------------------------APSVNPSNVKGGGGSPTELVITWEPLPEEEQ 745 (1051)
T ss_pred C------------------------------------------------CCccCCccccccCCCCceEEEEeccCCHHHc
Confidence 4 3347788888888899999999999 65677
Q ss_pred CCceeeeEEEEeecCCC-CeEEccC
Q psy12426 585 GSAIKGYEVERRERTSG-RWIKITP 608 (616)
Q Consensus 585 ~~~i~~Y~i~~~~~~~~-~w~~~~~ 608 (616)
||+-.+|+|.||..+.. +|.+...
T Consensus 746 NG~gfgY~Vswr~~g~~~~W~~~~v 770 (1051)
T KOG3513|consen 746 NGPGFGYRVSWRPQGADKEWKEVIV 770 (1051)
T ss_pred cCCCceEEEEEEeCCCCcccceeEe
Confidence 99999999999999987 9987544
No 3
>KOG4221|consensus
Probab=100.00 E-value=1e-46 Score=379.17 Aligned_cols=575 Identities=18% Similarity=0.243 Sum_probs=402.1
Q ss_pred CCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee----------------------ccceEEEeecCCCC---
Q psy12426 5 DRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL----------------------RPIWEKCAQTEGDT--- 59 (616)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~----------------------~G~Y~C~a~n~~~~--- 59 (616)
+++.|...++.+|++|.|.|.++|.|+|+|.|.|||..|.. +|.|+|+|.|..++
T Consensus 240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~ida 319 (1381)
T KOG4221|consen 240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDA 319 (1381)
T ss_pred eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCccccc
Confidence 35678899999999999999999999999999999987743 99999999995332
Q ss_pred ---------------Cce--------eEeeeccCCccc----eeeccccC--------CCCCceEecCcccCCeEEEEEE
Q psy12426 60 ---------------PKG--------KVLDLIEGNHPI----WEKCAQTE--------GDTPKGKVLDLIEGNQYEFRVL 104 (616)
Q Consensus 60 ---------------~~~--------~v~~~~~~~~p~----w~~~~~~~--------~~~~~l~i~~l~~~~~~~y~c~ 104 (616)
|.. ...+|...|.|+ |++++... ...+.+.|..+-..|.+.|+|.
T Consensus 320 saev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcv 399 (1381)
T KOG4221|consen 320 SAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCV 399 (1381)
T ss_pred ceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhh
Confidence 111 223455557777 99998762 2234488888999999999999
Q ss_pred EEcCCCCCCCCCCCCcce--------eecCCCcee-------eee----------cCcccccEEEEeeccCcccccccCC
Q psy12426 105 AVNKGGPGEPSDPTAPHI--------ARAKKGKCY-------HLV----------GTLLKDSIYEQLKRSGLFDQFHLCP 159 (616)
Q Consensus 105 a~n~~g~~~~~~~~~~~~--------~~~~~p~~~-------~~~----------g~p~~~~~~~~~~~~~~~~~~~~~~ 159 (616)
|.|+.|..+..+...... ..+..|.++ +|+ ++++..|+|++ . ....
T Consensus 400 aen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~--~-------~~~~ 470 (1381)
T KOG4221|consen 400 AENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFY--K-------VEGD 470 (1381)
T ss_pred hccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEE--e-------cCCc
Confidence 999999887763221110 111122221 122 78889999998 5 2333
Q ss_pred CceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEE
Q psy12426 160 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN 239 (616)
Q Consensus 160 ~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~ 239 (616)
.|.+............+.+|++...|.++|.|.|..|.+.++.. +.+....++|.. ...+....+.|.
T Consensus 471 ~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~p---LkV~t~pEgp~~---------~~a~ats~~ti~ 538 (1381)
T KOG4221|consen 471 VRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAP---LKVTTQPEGPVQ---------LQAYATSPTTIL 538 (1381)
T ss_pred hhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCc---eEEecCCCCCcc---------ccccccCcceEE
Confidence 45554444443378999999999999999999999999887643 333333333321 344556668899
Q ss_pred EeeecCc----eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe---cCCCC
Q psy12426 240 VIGEPIP----TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL---DIPSP 312 (616)
Q Consensus 240 ~~~~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~---~~p~~ 312 (616)
+.|.+++ .+.|++...... +....+....+...++|.+|.+.+.|.|+|.|.|..|.+..+..+.|. ..|++
T Consensus 539 v~WepP~~~n~~I~~yk~~ys~~-~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~Psa 617 (1381)
T KOG4221|consen 539 VTWEPPPFGNGPITGYKLFYSED-DTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSA 617 (1381)
T ss_pred EEecCCCCCCCCceEEEEEEEcC-CCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCC
Confidence 9999887 899999766554 222233333445699999999999999999999999988777777664 46766
Q ss_pred CCCCccceeecCCeEEEEEeCCCCCC-CCceEEEEEEEEeCCCCC---EEEccccccceEEeccccCCCeEEEEEEEEec
Q psy12426 313 PEGPLKPSNITKSSCNLEWRAPRDDG-GTDILHYVVEKMDMETGR---WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK 388 (616)
Q Consensus 313 p~~~~~~~~~~~~~~~l~W~~~~~~~-~~~i~~y~v~~~~~~~~~---~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~ 388 (616)
|.+.+.+...++.++++.|.+|.... ...+..|.++++...... |... ......+.+.+|++++.|.|++.|.+.
T Consensus 618 PP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v-~~n~~~~l~~~Lep~T~Y~vrIsa~t~ 696 (1381)
T KOG4221|consen 618 PPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVV-KGNTTQYLFNGLEPNTQYRVRISAMTV 696 (1381)
T ss_pred CCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeec-ccchhhhHhhcCCCCceEEEEEEEecc
Confidence 66658888999999999999876543 668999999998543322 2222 235677888999999999999999999
Q ss_pred CcCCCCccccCCEEccCCC-----CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeec
Q psy12426 389 IGESLPLVCQSPITAKDPF-----GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVP 462 (616)
Q Consensus 389 ~g~~~~~~~s~~~~~~~~~-----~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~ 462 (616)
.|.|+++.+ +...++. ..|.+|..+++. ...+++.+.|.+|...+. .+.+|.|.|+...+ .....+.++
T Consensus 697 nGtGpaS~w---~~aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~Pp~~~~~-~vrgY~ig~r~g~~~p~~~tIrl~ 771 (1381)
T KOG4221|consen 697 NGTGPASEW---VSAETPESDLDERVPGKPSELHVH-PGSNSIVVSWTPPPHPNI-VVRGYKIGYRPGSGIPDTGTIRLD 771 (1381)
T ss_pred CCCCCcccc---eeccCccccccccCCCCCceeeec-cCceeEEEEeCCCCChhh-hhcceEEeeecccCCCCCccEEec
Confidence 999998654 4444432 233444444433 367899999998766544 58999999986554 445556677
Q ss_pred CCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEec-c-------CcCCCeecc-ccccceeeee-ec------
Q psy12426 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK-P-------RFVAPVIDQ-YALQDMTAQE-YN------ 526 (616)
Q Consensus 463 ~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~-~-------~~~~p~~~~-~~~~~~~v~~-~~------ 526 (616)
.....|.|..|.|+..|.++++|+|..|.|.+......+... + ++.+|.-.. ..+..+.+++ |.
T Consensus 772 ~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~t 851 (1381)
T KOG4221|consen 772 EKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQT 851 (1381)
T ss_pred ceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEEEecCCCcc
Confidence 788999999999999999999999999999876543333221 1 223333332 2344444443 21
Q ss_pred -----ceeEEEe----eCeeeecc-------------------cc---cc-c----e----eeeeeeecC-CCCCCCCeE
Q psy12426 527 -----PFITLLF----KNFVLDLN-------------------EG---LK-S----M----VKLSYIDNV-PGKPSKPEA 565 (616)
Q Consensus 527 -----~~~~~~~----~~~~~~~~-------------------~~---~~-~----~----~~~~~~~~~-~~~P~~~~~ 565 (616)
++++|.- ++..+.+- ++ ++ + . +...+...+ ..||+++++
T Consensus 852 ~~~~~yTVr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv 931 (1381)
T KOG4221|consen 852 TDNRIYTVRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTV 931 (1381)
T ss_pred ccceEEEEEEeecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhcee
Confidence 6777762 22222220 00 01 1 1 344444444 478888885
Q ss_pred Eee-cCCcEEEEeeCCCCCCCCceeeeEEEEeecCC---CCeEEccC
Q psy12426 566 TDV-DKDHIKIKWQQPISNGGSAIKGYEVERRERTS---GRWIKITP 608 (616)
Q Consensus 566 ~~~-~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~---~~w~~~~~ 608 (616)
... ..+++.+.|.||... ||.|.+|.|.|..... .+|+....
T Consensus 932 ~p~e~P~~v~v~WqPp~e~-nG~I~~Yii~Ys~~~n~~~~dWt~~t~ 977 (1381)
T KOG4221|consen 932 QPDEKPTTVIVHWQPPTEP-NGEITEYIIYYSTDGNTPEHDWTIETT 977 (1381)
T ss_pred cccCCCCccccccCCCcCC-CCceeeEEEEEecCCCCchhhceeeec
Confidence 443 589999999988755 8999999999975543 47887554
No 4
>KOG4221|consensus
Probab=100.00 E-value=3e-46 Score=375.84 Aligned_cols=523 Identities=18% Similarity=0.258 Sum_probs=374.6
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee---------------------ccceEEEeecCCCC--------
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL---------------------RPIWEKCAQTEGDT-------- 59 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~---------------------~G~Y~C~a~n~~~~-------- 59 (616)
+.+.++..|+++.|+|.+++.|.|.+.|.||..++.. .|.|+|.+++....
T Consensus 147 ~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~l 226 (1381)
T KOG4221|consen 147 PESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAEL 226 (1381)
T ss_pred ccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEE
Confidence 7889999999999999999999999999999885532 99999999998322
Q ss_pred -----------------Cc------e--eEeeeccCCccc----eeeccccC---------CCCCceEecCcccCCeEEE
Q psy12426 60 -----------------PK------G--KVLDLIEGNHPI----WEKCAQTE---------GDTPKGKVLDLIEGNQYEF 101 (616)
Q Consensus 60 -----------------~~------~--~v~~~~~~~~p~----w~~~~~~~---------~~~~~l~i~~l~~~~~~~y 101 (616)
|. + .+++|...|.|. |++++... ....+|.|.+++..|+|.|
T Consensus 227 tv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~Y 306 (1381)
T KOG4221|consen 227 TVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKY 306 (1381)
T ss_pred EecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceE
Confidence 11 1 455666666666 99988773 2246788999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCccee--ecCCCceee--------ee----cCcccccEEEEeeccCcccccccCCCceEeccc
Q psy12426 102 RVLAVNKGGPGEPSDPTAPHIA--RAKKGKCYH--------LV----GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQT 167 (616)
Q Consensus 102 ~c~a~n~~g~~~~~~~~~~~~~--~~~~p~~~~--------~~----g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (616)
.|+|.|......+++-..+..- ....|+++. |. |.|++.+.|++ + |.+. .+ .+|.+..
T Consensus 307 tC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~k--N-gd~~--ip-sdy~ki~-- 378 (1381)
T KOG4221|consen 307 TCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYK--N-GDRI--IP-SDYFKIV-- 378 (1381)
T ss_pred EEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEe--c-Cccc--Cc-ccceEec--
Confidence 9999995444444411222111 112233222 22 88999999999 4 4322 33 4555432
Q ss_pred CCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccc-cCCCceeccCCcceEEEcCCeEEEEEEEe-----
Q psy12426 168 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVI----- 241 (616)
Q Consensus 168 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~-~~~P~~~~~~~~~~~v~~g~~~~l~c~~~----- 241 (616)
++. .++|..+-..|.|.|+|.|.|..|......... +..+.. ...+.+ ...+.++.+..-+...+.|.+.
T Consensus 379 -~~~-~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~-vv~~p~~~~s~~~-~sap~~lv~~~~~srfi~~tw~~p~~~ 454 (1381)
T KOG4221|consen 379 -GGG-NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLE-VVPQPASASSDLL-PSAPRDLVANLVSSRFIQLTWRPPAQI 454 (1381)
T ss_pred -CCC-CcEEEEEecccchhhhhhhccCcccccchhhhe-eccCCcccccCcc-ccCCcceecccccceeEEEeecCcccc
Confidence 222 288888999999999999999999755332211 211110 001111 1222333333333333444433
Q ss_pred eecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCcccee
Q psy12426 242 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSN 321 (616)
Q Consensus 242 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~ 321 (616)
+.+.+.++|++-..... ..+.......+ ....+.++++...|.++|.|.|..|....+..|.|...|..|.. +....
T Consensus 455 ~g~i~~~~v~~~~~~~~-rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~-~~a~a 531 (1381)
T KOG4221|consen 455 SGNISTYTVFYKVEGDV-RERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQ-LQAYA 531 (1381)
T ss_pred CCCcceEEEEEecCCch-hhhheeccCCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCcc-ccccc
Confidence 33455677775433222 22332222323 68899999999999999999999999999999999998887766 77777
Q ss_pred ecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCE
Q psy12426 322 ITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPI 401 (616)
Q Consensus 322 ~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~ 401 (616)
.+...+.+.|++|.. ++.+|.+|.+.+...+...|.... ....+++|.+|.+.+.|.|+|.|.|..|.|.. +..+
T Consensus 532 ts~~ti~v~WepP~~-~n~~I~~yk~~ys~~~~~~~~~~~-~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~s---S~~i 606 (1381)
T KOG4221|consen 532 TSPTTILVTWEPPPF-GNGPITGYKLFYSEDDTGKELRVE-NNATEYTINGLEKYTEYSIRVVAYNSAGSGVS---SADI 606 (1381)
T ss_pred cCcceEEEEecCCCC-CCCCceEEEEEEEcCCCCceEEEe-cCccEEEeecCCCccceEEEEEEecCCCCCCC---CCce
Confidence 888999999998875 456999999999887666666553 45678999999999999999999999999876 5677
Q ss_pred EccCCCCCCCCCCC-CEEEEecCCeEEEEecCCCC-CCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCe
Q psy12426 402 TAKDPFGRPDRPGQ-PTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEE 478 (616)
Q Consensus 402 ~~~~~~~~p~~p~~-~~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~ 478 (616)
.+.+..+.|++|++ +++...+.++|.|+|.+|.. ..++.|.+|.|+|+.... .......+.++...|.+.+|+|++.
T Consensus 607 ~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~ 686 (1381)
T KOG4221|consen 607 TVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQ 686 (1381)
T ss_pred EEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCce
Confidence 88788888988876 99999999999999998764 455569999999997654 3344445566788999999999999
Q ss_pred EEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCC
Q psy12426 479 YEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPG 558 (616)
Q Consensus 479 Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (616)
|.|||.|.|..|.|++|.+...-|....... ..|.
T Consensus 687 Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e---------------------------------------------~vp~ 721 (1381)
T KOG4221|consen 687 YRVRISAMTVNGTGPASEWVSAETPESDLDE---------------------------------------------RVPG 721 (1381)
T ss_pred EEEEEEEeccCCCCCcccceeccCccccccc---------------------------------------------cCCC
Confidence 9999999999999999987665544322110 2244
Q ss_pred CCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeec
Q psy12426 559 KPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRER 598 (616)
Q Consensus 559 ~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~ 598 (616)
+|..+. .....++|.+.|.||... +-.+.||+|.||..
T Consensus 722 ~ps~l~-~~~g~~si~vsW~Pp~~~-~~~vrgY~ig~r~g 759 (1381)
T KOG4221|consen 722 KPSELH-VHPGSNSIVVSWTPPPHP-NIVVRGYKIGYRPG 759 (1381)
T ss_pred CCceee-eccCceeEEEEeCCCCCh-hhhhcceEEeeecc
Confidence 555443 334678999999997654 57889999999743
No 5
>KOG4222|consensus
Probab=100.00 E-value=4.3e-40 Score=329.77 Aligned_cols=496 Identities=20% Similarity=0.261 Sum_probs=344.9
Q ss_pred ccceEEEeecCCCC-------------------CceeEe--------eeccCCccc----eeecccc--------CCCCC
Q psy12426 46 RPIWEKCAQTEGDT-------------------PKGKVL--------DLIEGNHPI----WEKCAQT--------EGDTP 86 (616)
Q Consensus 46 ~G~Y~C~a~n~~~~-------------------~~~~v~--------~~~~~~~p~----w~~~~~~--------~~~~~ 86 (616)
+|.|.|+|+|..|. |+..+. +|.++|+|. |.+.... ..++.
T Consensus 199 ~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~q 278 (1281)
T KOG4222|consen 199 EGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQ 278 (1281)
T ss_pred CceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccc
Confidence 78888888887664 233222 234557877 6664433 23336
Q ss_pred ceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCccee--ecCCC--------ceee----eecCcccccEEEEeeccCcc
Q psy12426 87 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA--RAKKG--------KCYH----LVGTLLKDSIYEQLKRSGLF 152 (616)
Q Consensus 87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~--~~~~p--------~~~~----~~g~p~~~~~~~~~~~~~~~ 152 (616)
++.|..+.+.|+|.|.|.|.|..|....++..+++.- ....| ..++ ..|+|.+.+.|.+ . |-+
T Consensus 279 tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~k--e-g~q 355 (1281)
T KOG4222|consen 279 TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLK--E-GSQ 355 (1281)
T ss_pred cccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEec--c-Ccc
Confidence 7889999999999999999999998887743322110 00111 1222 2399999999998 3 222
Q ss_pred cccc---cCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEE
Q psy12426 153 DQFH---LCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVR 229 (616)
Q Consensus 153 ~~~~---~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 229 (616)
+-.. ......+. .+ .....|.|++++..|.|.|.|...+..|.+........+......-||.++...+.+.+..
T Consensus 356 ~llf~~~p~~~~~r~-sv-s~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~ 433 (1281)
T KOG4222|consen 356 DLLFSASPPSSNGRG-SV-SPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLP 433 (1281)
T ss_pred eecccCCCCCcCccc-ee-cCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccc
Confidence 2000 11111111 11 1122899999999999999999988888755433222222222224566666777778888
Q ss_pred cCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy12426 230 AGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308 (616)
Q Consensus 230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~ 308 (616)
.+..+.+.|.+.+.|.+.+.|.+++..+... .+..+...+ +++|.++...|.|.|+|.+.+..|....++.+.+..
T Consensus 434 v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~---~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~ 510 (1281)
T KOG4222|consen 434 VGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIG---SLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEK 510 (1281)
T ss_pred cCcccccChhhhCCCCCCchhhhcccccccCCcccceeeec---eeeeeeeecCCCcceeeeccCcccccccceeeEhhh
Confidence 8999999999999999999999998876533 333333333 899999999999999999999999998888887743
Q ss_pred ---------------CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEe-CCCCCEEEccc-cccceEEec
Q psy12426 309 ---------------IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD-METGRWVPMGD-VSGTYTRAE 371 (616)
Q Consensus 309 ---------------~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~-~~~~~~~~~~~-~~~~~~~i~ 371 (616)
.|.+|..+ .+..+....+.|+|......+..++..|.+++.. .-...|..... ...+...|.
T Consensus 511 ~~~s~q~~r~~D~S~~pS~p~~p-~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~ 589 (1281)
T KOG4222|consen 511 AGSSQQFCRCEDPSALPSPPGTP-GVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIR 589 (1281)
T ss_pred cCcccccccCCChhhCCCCCCCC-ccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceeeec
Confidence 23344442 4667888999999998766677889999987754 44556777654 556789999
Q ss_pred cccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCC------------C-CCCCC-EEEEecCCeEEEEecCCCCCC
Q psy12426 372 NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP------------D-RPGQP-TVTDWGKDHVDLEWTPPKKDG 437 (616)
Q Consensus 372 ~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p------------~-~p~~~-~~~~~~~~~v~l~W~~p~~~~ 437 (616)
+|.+...|.|.|+|.|..|.+.++..+..+........- + ....+ ....++.+++.|.|..+...+
T Consensus 590 gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~ 669 (1281)
T KOG4222|consen 590 GLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHG 669 (1281)
T ss_pred CcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccC
Confidence 999999999999999999998887766666543111000 0 11111 123457889999999876645
Q ss_pred CCcceeEEEEEeeCCC---CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeecc
Q psy12426 438 GSPISQYIIEKKPKYG---PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQ 514 (616)
Q Consensus 438 ~~~i~~Y~i~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~ 514 (616)
..-|.+|+|.|+.... +|...........++.+.+|.|++.|+|.++.+...|.+-.+.++...+....+++|.
T Consensus 670 ~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PS--- 746 (1281)
T KOG4222|consen 670 SQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPS--- 746 (1281)
T ss_pred cccccceEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCC---
Confidence 5569999999998765 6776655556677899999999999999999998877655555555444444333332
Q ss_pred ccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCC---CeEEeecCCcEEEEeeC-CCCCCCCceee
Q psy12426 515 YALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSK---PEATDVDKDHIKIKWQQ-PISNGGSAIKG 590 (616)
Q Consensus 515 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~---~~~~~~~~~~i~l~W~~-p~~~~~~~i~~ 590 (616)
.+|.. +.....+.+++.|+|.+ |.+..||.+.+
T Consensus 747 -------------------------------------------app~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg 783 (1281)
T KOG4222|consen 747 -------------------------------------------APPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQG 783 (1281)
T ss_pred -------------------------------------------CCCCCccccccccCCCceeeEEecCCcccccCCcccc
Confidence 34445 34556688899999999 55777999999
Q ss_pred eEEEEe
Q psy12426 591 YEVERR 596 (616)
Q Consensus 591 Y~i~~~ 596 (616)
|.|..-
T Consensus 784 ~ki~~~ 789 (1281)
T KOG4222|consen 784 YKIECS 789 (1281)
T ss_pred eeEEee
Confidence 998764
No 6
>KOG4222|consensus
Probab=99.97 E-value=2.5e-29 Score=253.00 Aligned_cols=540 Identities=21% Similarity=0.286 Sum_probs=363.1
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-----------------------------ccceEE
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-----------------------------RPIWEK 51 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-----------------------------~G~Y~C 51 (616)
||+|+ ++|.|..|..|+.++|.|.++|.|+|.|+|||+|..... .|.|.|
T Consensus 31 ~p~ii-ehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c 109 (1281)
T KOG4222|consen 31 PPRII-EHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC 109 (1281)
T ss_pred CCceE-ecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence 57887 889999999999999999999999999999999953211 899999
Q ss_pred EeecCCCC--------------------Cc--------eeEeeecc-CCccc----eeecccc----------CCCCCce
Q psy12426 52 CAQTEGDT--------------------PK--------GKVLDLIE-GNHPI----WEKCAQT----------EGDTPKG 88 (616)
Q Consensus 52 ~a~n~~~~--------------------~~--------~~v~~~~~-~~~p~----w~~~~~~----------~~~~~~l 88 (616)
.|.|..|. |. .-+++|.. .|.|. |.+++.+ .+..+.|
T Consensus 110 vasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~L 189 (1281)
T KOG4222|consen 110 VASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNL 189 (1281)
T ss_pred eecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcE
Confidence 99999776 11 13344422 24444 8888877 3566889
Q ss_pred EecCcccCCeEEEEEEEEcCCCCCCCCCCCCcce---eecCCCceee------------eecCcccccEEEEeeccCccc
Q psy12426 89 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI---ARAKKGKCYH------------LVGTLLKDSIYEQLKRSGLFD 153 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~---~~~~~p~~~~------------~~g~p~~~~~~~~~~~~~~~~ 153 (616)
.|.++...|+|.|.|.|.|..|+-+...-..... .....|.+.. +-|.|.+.++|.+ +++.++
T Consensus 190 lIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk--~~~~~P 267 (1281)
T KOG4222|consen 190 LISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKK--DDPSLP 267 (1281)
T ss_pred EEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeec--cCCCCC
Confidence 9999999999999999999999776552111100 1111222211 2288999999999 644333
Q ss_pred ccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCe
Q psy12426 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN 233 (616)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~ 233 (616)
..++. +-....++.|.+..+.|+|.|.|.|.|..|.-+.+. ..++ ..+|.| ...+.+..+..|..
T Consensus 268 ----~~ry~----i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa---~ltV---~apP~f-~kkp~dq~v~lg~~ 332 (1281)
T KOG4222|consen 268 ----RSRYS----ILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASA---TLTV---QAPPSF-GKKPRDQKVALGGT 332 (1281)
T ss_pred ----cccee----eeeccccccccccCCCcccceeeecccccccccccc---ceEE---ecCccc-ccccCccccccCce
Confidence 22222 223345899999999999999999999999876552 2332 256766 34456777888999
Q ss_pred EEEEEEEeeecCceeEEEECCeee-c-------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITI-I-------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~-~-------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~ 305 (616)
++|.|.+.+.|.+.+.|.+.+... . ...+..+...+ .|+|.++...|.|.|.|...+..|.......+.
T Consensus 333 vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~ 409 (1281)
T KOG4222|consen 333 VTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLE 409 (1281)
T ss_pred EEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEE
Confidence 999999999999999999987652 1 12334444344 899999999999999999999888765544444
Q ss_pred EecC---CCCCCC----CccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC--CCEE-EccccccceEEeccccC
Q psy12426 306 VLDI---PSPPEG----PLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET--GRWV-PMGDVSGTYTRAENLIE 375 (616)
Q Consensus 306 v~~~---p~~p~~----~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~--~~~~-~~~~~~~~~~~i~~L~~ 375 (616)
+.+. -.||.. +.+-+......+.+.|..-.. +. +.+.+...+- ..|. .........+.+.+|..
T Consensus 410 qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~----P~--p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~ 483 (1281)
T KOG4222|consen 410 QTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGA----PT--PNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKG 483 (1281)
T ss_pred EEeeeccCCCCceeeecccccccccCcccccChhhhCC----CC--CCchhhhcccccccCCcccceeeeceeeeeeeec
Confidence 3221 122211 111111113334444432111 11 1111111100 0011 11112345688889999
Q ss_pred CCeEEEEEEEEecCcCCCCccccCCEEc------------cCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCccee
Q psy12426 376 GHDYNFRVKAVNKIGESLPLVCQSPITA------------KDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQ 443 (616)
Q Consensus 376 ~~~y~~~v~a~n~~g~~~~~~~s~~~~~------------~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~ 443 (616)
.+.|.|+|.|.+..|+..++ ..+.+ ..+...|++|....+..++.++++|+|.+....+..++.+
T Consensus 484 ~DtG~YTc~as~~~ges~wS---atl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~ 560 (1281)
T KOG4222|consen 484 PDTGRYTCIASDESGESTWS---ATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASG 560 (1281)
T ss_pred CCCcceeeeccCcccccccc---eeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccch
Confidence 99999999999998887654 22322 2233557888888889999999999999765557789999
Q ss_pred EEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeec--cccccc
Q psy12426 444 YIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVID--QYALQD 519 (616)
Q Consensus 444 Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~--~~~~~~ 519 (616)
|.+++...+- .|...... ...+.+.|.+|+|++.|.|.|+|.|..|.+.++..+..+++.++.-+-+.. .+...+
T Consensus 561 yiieafs~~~~etw~~ta~~-v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ 639 (1281)
T KOG4222|consen 561 YIIEAFSPDLGETWQTTAGR-VKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRE 639 (1281)
T ss_pred hHHHHhhhhhcccccccccc-cccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHh
Confidence 9998865543 67665332 346789999999999999999999999999999888877665431111100 000000
Q ss_pred eeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCe-EEeecCCcEEEEeeCCCCCCCCceeeeEEEEeec
Q psy12426 520 MTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPE-ATDVDKDHIKIKWQQPISNGGSAIKGYEVERRER 598 (616)
Q Consensus 520 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~ 598 (616)
+ .+.-..+. ....+.+++.+.|..+.+.+..-|.+|+|.||..
T Consensus 640 l------------------------------------s~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~ 683 (1281)
T KOG4222|consen 640 L------------------------------------SNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSL 683 (1281)
T ss_pred h------------------------------------cccceeeccccccchhheeeeeeeecccCcccccceEEEeccC
Confidence 0 00111111 4456889999999998876679999999999988
Q ss_pred CC--CCeEEcc
Q psy12426 599 TS--GRWIKIT 607 (616)
Q Consensus 599 ~~--~~w~~~~ 607 (616)
.. .+|..+.
T Consensus 684 ~~~~a~~s~~~ 694 (1281)
T KOG4222|consen 684 GSQLAQWSNAG 694 (1281)
T ss_pred ccccccccccc
Confidence 75 4677544
No 7
>KOG4194|consensus
Probab=99.84 E-value=6.6e-20 Score=173.73 Aligned_cols=271 Identities=17% Similarity=0.210 Sum_probs=187.2
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEee--ecCCeeeeeeCCeeeee-----ccceEEEeecCCCCCceeEeeeccCCcc
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIG--EPVPHVDWRAGGNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHP 73 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g--~P~p~v~W~~~~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p 73 (616)
.|+|..+ |+++....|+.++|+|.|.+ ..+-.+.|.|+.+.+.. ...|.-.+.|..
T Consensus 503 kpqI~~q-Pe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~---------------- 565 (873)
T KOG4194|consen 503 KPQIVTQ-PETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGT---------------- 565 (873)
T ss_pred CcceecC-chHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCc----------------
Confidence 3788855 99999999999999999876 33337999999863321 222222221110
Q ss_pred ceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCc---ceeecCCCceeee------------ecCcc
Q psy12426 74 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP---HIARAKKGKCYHL------------VGTLL 138 (616)
Q Consensus 74 ~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~---~~~~~~~p~~~~~------------~g~p~ 138 (616)
.+....-.+.|.+.+|.-+|+|.|+|.+.|..|...+...... .......|.++++ .|.|.
T Consensus 566 ----~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~ 641 (873)
T KOG4194|consen 566 ----FGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPR 641 (873)
T ss_pred ----cchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCC
Confidence 0111222467899999999999999999999997765411100 1122244555542 19999
Q ss_pred cccEEEEeeccCc-ccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCc
Q psy12426 139 KDSIYEQLKRSGL-FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 217 (616)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~ 217 (616)
+.+.|.+ ++|. |+ ..+-.+. .+-.++-.+.|.|+.++|.|.|+|.|.|.+|..... +++++. +.|.
T Consensus 642 PeIawqk--dggtdFP----AA~eRRl-~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isan-AtL~V~-----e~p~ 708 (873)
T KOG4194|consen 642 PEIAWQK--DGGTDFP----AARERRL-HVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISAN-ATLTVL-----ETPS 708 (873)
T ss_pred cceeehh--cCCCCCc----hhhhhee-eecCCCCEEEEecccccccceeEEeeeccccceeec-eEEEEe-----cCCc
Confidence 9999999 7664 43 2222222 222344478899999999999999999999986543 223232 3455
Q ss_pred eeccCCcceEEEcCCeEEEEEEEeeecC-ceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426 218 INRDQLSDIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 296 (616)
Q Consensus 218 ~~~~~~~~~~v~~g~~~~l~c~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g 296 (616)
+.. +..+..|..|+++.+.|.+.+.|. |++.|+|+++++.-..+..... +...+++.+....|.|.|+|...|..|
T Consensus 709 f~~-PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d--~dQllvv~~~~~~daG~yTcem~~~~~ 785 (873)
T KOG4194|consen 709 FSI-PLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPD--GDQLLVVKENLVEDAGIYTCEMSNTLG 785 (873)
T ss_pred ccc-cccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCC--CCeEEEEEehhhhhcceEEEEEEeecc
Confidence 432 256788999999999999999988 9999999998877665554433 334788888889999999999999988
Q ss_pred CceeeEEEEEec
Q psy12426 297 TDKGTAKVTVLD 308 (616)
Q Consensus 297 ~~~~~~~l~v~~ 308 (616)
.......+.+..
T Consensus 786 ~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 786 TERIHICLLVYQ 797 (873)
T ss_pred ceeeEEEEEEee
Confidence 776555555443
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.83 E-value=3.6e-19 Score=169.41 Aligned_cols=242 Identities=11% Similarity=0.041 Sum_probs=155.8
Q ss_pred CceEecCCCeEEEEEEE-----eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426 10 GDIKLSAGTTLKFDANI-----IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD 84 (616)
Q Consensus 10 ~~~~v~~g~~v~l~C~~-----~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~ 84 (616)
....+.+|+.+.|.|.+ .|.|.|.|+|+|+|..... ... ...
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~----~~~-----------------------------~~~ 80 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR----IIP-----------------------------IDN 80 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce----EEE-----------------------------ccC
Confidence 34457789999999986 7999999999999853220 000 011
Q ss_pred CCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCccee------ecCCCcee--------e-------eecCcccccEE
Q psy12426 85 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA------RAKKGKCY--------H-------LVGTLLKDSIY 143 (616)
Q Consensus 85 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~------~~~~p~~~--------~-------~~g~p~~~~~~ 143 (616)
...+.|..+...|+|.|.|.|.|..|....+....+... ....|..+ . +.+.+.+.+.|
T Consensus 81 g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W 160 (326)
T PHA02785 81 GSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIW 160 (326)
T ss_pred CceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEE
Confidence 235778889999999999999998876554311111000 01111111 1 11567778999
Q ss_pred EEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCC-CCCCEEeccccCCCceeccC
Q psy12426 144 EQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD-PTAPHIARAKKVSPYINRDQ 222 (616)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~-~~~~~~~~~~~~~P~~~~~~ 222 (616)
++ . .. ....+ ... .....|.|.+++.+|.|.|+|.|.|..|...... ....+.+.....+|.+ ..
T Consensus 161 ~k--~-~~----~~~~r---~~~--~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~--~~ 226 (326)
T PHA02785 161 SG--H-RR----LRNKR---LKQ--RTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM--QL 226 (326)
T ss_pred cc--C-Cc----cCCcc---eEe--cCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee--cC
Confidence 77 3 11 11111 111 1234899999999999999999999877533210 0111222223345544 23
Q ss_pred CcceEEEcCCeEEEEEEEeeecCc---eeEEEECCeeeccc-----CcEEEEecC--------CceEEEecCCCCCCcEE
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIP---TKEWLCNDITIISK-----DRFKIVNDD--------KSTKLKVFDSKRGDSGI 286 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~---~~~W~~~~~~~~~~-----~~~~~~~~~--------~~~~l~i~~l~~~~~g~ 286 (616)
+....+..|+.+.|.|.+.+.|.+ .+.|++|+..+... .++...... ....|.|.+++.+|.|.
T Consensus 227 p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~ 306 (326)
T PHA02785 227 PEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATT 306 (326)
T ss_pred CCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCee
Confidence 467778889999999999998864 89999999877432 122222110 13579999999999999
Q ss_pred EEEEEEcCCCCc
Q psy12426 287 YTLAVKNSWGTD 298 (616)
Q Consensus 287 y~c~a~n~~g~~ 298 (616)
|+|.|.|..|..
T Consensus 307 Y~C~A~n~~~~~ 318 (326)
T PHA02785 307 FTCMAFTIPSIS 318 (326)
T ss_pred eEEEEEeccCce
Confidence 999999977543
No 9
>KOG0196|consensus
Probab=99.75 E-value=1.2e-16 Score=157.12 Aligned_cols=195 Identities=25% Similarity=0.350 Sum_probs=153.3
Q ss_pred cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEe--CCCCCEEEccc----------cccceEEeccccC
Q psy12426 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD--METGRWVPMGD----------VSGTYTRAENLIE 375 (616)
Q Consensus 308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~--~~~~~~~~~~~----------~~~~~~~i~~L~~ 375 (616)
.+|+.|.+ + +..+++.++.|.|.+|.+.++..-..|.+..+. .....+..+.. -....+.+.+|.+
T Consensus 330 ~PPSaP~n-l-is~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a 407 (996)
T KOG0196|consen 330 RPPSAPRN-L-ISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLA 407 (996)
T ss_pred CCCCccce-e-eeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccc
Confidence 35555555 3 345889999999999999998888888876654 22334444432 2356789999999
Q ss_pred CCeEEEEEEEEecCcCCC-CccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCC
Q psy12426 376 GHDYNFRVKAVNKIGESL-PLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP 454 (616)
Q Consensus 376 ~~~y~~~v~a~n~~g~~~-~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~ 454 (616)
.+.|+|.|.|.|+...-. .......+.+.+....|++...++......++++|+|..|..+++. |..|+|.|.+.+.+
T Consensus 408 h~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~-ildYEvky~ek~~~ 486 (996)
T KOG0196|consen 408 HTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGV-ILDYEVKYYEKDED 486 (996)
T ss_pred ccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCc-ceeEEEEEeecccc
Confidence 999999999999876432 2233556677777888999999999999999999999999888775 99999999988653
Q ss_pred ceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426 455 WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505 (616)
Q Consensus 455 ~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~ 505 (616)
...........+..+|.+|+|++.|.|+|+|++..|.|.+|....+.|..+
T Consensus 487 e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 487 ERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred ccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 333344455678999999999999999999999999999999988877654
No 10
>KOG4194|consensus
Probab=99.71 E-value=9.1e-16 Score=146.04 Aligned_cols=207 Identities=15% Similarity=0.165 Sum_probs=145.7
Q ss_pred CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEE
Q psy12426 172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL 251 (616)
Q Consensus 172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~ 251 (616)
..|.+.++...|.|.|+|.+.|.+|...+....+.+ ...|.| ...|.++.+..|+.+.|.|.+.|.|.|.|.|.
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV-----~~~PsF-tktP~dltl~tg~mArl~CaAtG~P~PeIawq 647 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTV-----NQAPSF-TKTPEDLTLRTGQMARLECAATGHPRPEIAWQ 647 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEe-----eccCcc-ccCcccceeecccceeeeeeccCCCCcceeeh
Confidence 467899999999999999999999987655433333 356887 56678999999999999999999999999999
Q ss_pred ECCee-eccc--CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEE
Q psy12426 252 CNDIT-IISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCN 328 (616)
Q Consensus 252 ~~~~~-~~~~--~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~ 328 (616)
++|.. ++.. .|+.+. .....+.|.|+..+|.|.|+|.|.|.+|..++.+.++|.+.|.+...-.......+..+.
T Consensus 648 kdggtdFPAA~eRRl~Vm--pedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~v 725 (873)
T KOG4194|consen 648 KDGGTDFPAARERRLHVM--PEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLV 725 (873)
T ss_pred hcCCCCCchhhhheeeec--CCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEE
Confidence 98876 4332 344333 233489999999999999999999999999999999999988765531223445678899
Q ss_pred EEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc---cccccceEEeccccCCCeEEEEEEEEecCcC
Q psy12426 329 LEWRAPRDDGGTDILHYVVEKMDMETGRWVPM---GDVSGTYTRAENLIEGHDYNFRVKAVNKIGE 391 (616)
Q Consensus 329 l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~---~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~ 391 (616)
|+|..-..... -++.|.+.+..-.... ......-+.+......+.+.|.|...|..|.
T Consensus 726 lqC~a~~~~a~-----pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~ 786 (873)
T KOG4194|consen 726 LQCLAEGAPAD-----PRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGT 786 (873)
T ss_pred EEEecCCCCCC-----ccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccc
Confidence 99986333211 1223322222111110 1122333455544455566777777777765
No 11
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.62 E-value=1.3e-14 Score=111.25 Aligned_cols=93 Identities=33% Similarity=0.523 Sum_probs=85.8
Q ss_pred cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426 221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 300 (616)
Q Consensus 221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~ 300 (616)
..+.++.+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+......+.|.|.++...|+|.|+|.|.|..|....
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~ 84 (98)
T cd05762 5 QFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQA 84 (98)
T ss_pred ECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeE
Confidence 44678899999999999999999999999999999998777888777777789999999999999999999999999999
Q ss_pred eEEEEEecCCCCC
Q psy12426 301 TAKVTVLDIPSPP 313 (616)
Q Consensus 301 ~~~l~v~~~p~~p 313 (616)
++.|.|.+.|.+|
T Consensus 85 ~~~l~V~~~P~pP 97 (98)
T cd05762 85 QVNLTVVDKPDPP 97 (98)
T ss_pred EEEEEEecCCCCC
Confidence 9999999999887
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.60 E-value=6.1e-14 Score=124.74 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=83.2
Q ss_pred CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEee-----ecCc
Q psy12426 172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG-----EPIP 246 (616)
Q Consensus 172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-----~p~~ 246 (616)
..|.|.+++.+|+|.|+|.|.|..|....+ ..+.+ ..+ +.+..+.+|+.+.|.|.+.+ .|.|
T Consensus 98 ~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~---i~L~V----~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p 164 (227)
T PHA02826 98 ENLWIGNVINIDEGIYICTISSGNICEEST---IRLTF----DSG------TINYQFNSGKDSKLHCYGTDGISSTFKDY 164 (227)
T ss_pred CeEEECCCChHHCEEEEEEEEECCcceEEE---EEEEE----ecC------CccceEecCCCEEEEeeCCCCccccCCCc
Confidence 379999999999999999999977653321 11222 111 23456788999999999863 3578
Q ss_pred eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426 247 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 295 (616)
Q Consensus 247 ~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~ 295 (616)
.+.|+|++..+..+.++.+... ...|.|.+++.+|+|.|+|.|....
T Consensus 165 ~I~WyKng~~l~~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 165 TLTWYKNGNIVLYTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred eEEEEECCEECCCCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEeE
Confidence 9999999999876666665533 3489999999999999999999854
No 13
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.54 E-value=1.4e-14 Score=108.99 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=68.4
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ 80 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~ 80 (616)
||.|... +.+..+.+|+.|.|.|.+.|+|.|.|+|+|++..+.....+ .
T Consensus 1 ~p~i~~~-~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~---------------------------- 49 (88)
T cd05851 1 PADINVK-FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--S---------------------------- 49 (88)
T ss_pred CCceEEc-cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--e----------------------------
Confidence 7888855 89999999999999999999999999999999877532211 1
Q ss_pred cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.....|.|.++.+.|.|.|.|.|.|..|.....
T Consensus 50 --~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 82 (88)
T cd05851 50 --MSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQ 82 (88)
T ss_pred --cCCCEEEECcCChhhCEEEEEEEEcCCCceEEE
Confidence 123579999999999999999999999976554
No 14
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.51 E-value=4.2e-12 Score=121.15 Aligned_cols=234 Identities=17% Similarity=0.105 Sum_probs=138.5
Q ss_pred cCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccC
Q psy12426 135 GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV 214 (616)
Q Consensus 135 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~ 214 (616)
|.|.+.++|++ +++..+ ... .. .....+.|.++..+|+|.|+|.|.|..|....+ ..+.+... .
T Consensus 57 g~p~~~i~W~K--~g~~~~--------~~~-~~-~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s---~~L~V~~~-~ 120 (326)
T PHA02785 57 GYNILDILWEK--RGADND--------RII-PI-DNGSNMLILNPTQSDSGIYICITKNETYCDMMS---LNLTIVSV-S 120 (326)
T ss_pred CCCCceEEEEE--CCCccc--------eEE-Ec-cCCceEEEcccCcccCeEEEEEEECCCcceEEE---EEEEEEec-C
Confidence 66678899999 521111 111 11 123357899999999999999999988764432 12222211 1
Q ss_pred CCceeccCCcceEEEcCCeEEEEEE-----EeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEE
Q psy12426 215 SPYINRDQLSDIKVRAGSNFEFDIN-----VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL 289 (616)
Q Consensus 215 ~P~~~~~~~~~~~v~~g~~~~l~c~-----~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c 289 (616)
+|.+. ..+....+.+|..+.|.|. ..+.+.+.+.|+++.. + ...++..... ..|.|.+++..|.|.|+|
T Consensus 121 ~~~~~-~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~---~~L~i~~v~~~d~G~Y~C 194 (326)
T PHA02785 121 ESNID-LISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTP---GIITIEDVRKNDAGYYTC 194 (326)
T ss_pred CCccc-eeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCC---CeEEEeecChhhCeEEEE
Confidence 23221 1223455778999999997 2367888999987643 2 3344443322 389999999999999999
Q ss_pred EEEcCCCCcee----eEEEEEecCCCCCC--CCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEE--eCCC------C
Q psy12426 290 AVKNSWGTDKG----TAKVTVLDIPSPPE--GPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM--DMET------G 355 (616)
Q Consensus 290 ~a~n~~g~~~~----~~~l~v~~~p~~p~--~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~--~~~~------~ 355 (616)
.|.|..|.... .+.+.+..+..+|. .|.......++.+.|.|.+........ ..+.+... .... .
T Consensus 195 ~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~-~~v~W~kng~~i~~~~~~~~~ 273 (326)
T PHA02785 195 VLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTD-ADVFWISNGMYYEEDDEDGDG 273 (326)
T ss_pred EEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCC-ceEEEEECCEECCCcCCCCce
Confidence 99998876533 23344443333331 122233445778999998754332110 11222111 0000 0
Q ss_pred CEEEccc--------cccceEEeccccCCCeEEEEEEEEecCcC
Q psy12426 356 RWVPMGD--------VSGTYTRAENLIEGHDYNFRVKAVNKIGE 391 (616)
Q Consensus 356 ~~~~~~~--------~~~~~~~i~~L~~~~~y~~~v~a~n~~g~ 391 (616)
....... .....+.|.++...+.+.|.|.|.|..|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 274 RISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred eEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 0010000 11346889999999999999999997754
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.49 E-value=1.3e-13 Score=105.87 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=71.3
Q ss_pred CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT 81 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~ 81 (616)
|.|. +.|+++.+.+|+.+.|.|.+.|.|+|.|.|+|+|++|.....|.-..
T Consensus 1 p~~~-~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~---------------------------- 51 (98)
T cd05762 1 PQII-QFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN---------------------------- 51 (98)
T ss_pred CceE-ECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe----------------------------
Confidence 5666 45999999999999999999999999999999999997544443321
Q ss_pred CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
......|.|.++...|+|.|.|.|.|..|.....
T Consensus 52 ~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~ 85 (98)
T cd05762 52 TENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ 85 (98)
T ss_pred cCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence 1224689999999999999999999999987765
No 16
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.49 E-value=1.9e-13 Score=104.32 Aligned_cols=86 Identities=17% Similarity=0.301 Sum_probs=71.0
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ 80 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~ 80 (616)
||+|. ..|++..+.+|+++.|.|.+.|+|.|.+.|+|+|..+....+|.-.-
T Consensus 3 ~~~~~-~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--------------------------- 54 (92)
T cd05747 3 PATIL-TKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS--------------------------- 54 (92)
T ss_pred CCccc-ccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE---------------------------
Confidence 68887 45899999999999999999999999999999998876545543321
Q ss_pred cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
......|.|.++...|.|.|.|.|.|..|.....
T Consensus 55 -~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 88 (92)
T cd05747 55 -TEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQ 88 (92)
T ss_pred -cCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEE
Confidence 1224689999999999999999999999976543
No 17
>KOG3515|consensus
Probab=99.47 E-value=6.3e-11 Score=119.42 Aligned_cols=352 Identities=12% Similarity=-0.001 Sum_probs=176.5
Q ss_pred EEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeec-CceeEEEE
Q psy12426 174 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP-IPTKEWLC 252 (616)
Q Consensus 174 l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~ 252 (616)
+.+..+...+.+.|.|.|.+.......+. .........|.+...........+.+.......+.+.| .+.+.|..
T Consensus 363 ~~~q~~~~~~~g~v~c~a~~~~~~~~sss----~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~ 438 (741)
T KOG3515|consen 363 HYAQPSSQQDGGQVTCPADNLELAHSSSS----SFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTF 438 (741)
T ss_pred eeecccchhcCceEEcccccccccccccc----ceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhhee
Confidence 44556677899999999988764422221 22222234454433333334444555444444444554 45899999
Q ss_pred CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEe
Q psy12426 253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWR 332 (616)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~ 332 (616)
++..+.......+..........+.++...|.|.|.|.|.|..|.......+.+...|..-..........++++...|.
T Consensus 439 ~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~ 518 (741)
T KOG3515|consen 439 RLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECM 518 (741)
T ss_pred cceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceee
Confidence 88887655443333333333455667888999999999999999887766655555443222112223333444444443
Q ss_pred CCCCCCCCceEEEEEEEEeCCCCCEEEc------cccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCC
Q psy12426 333 APRDDGGTDILHYVVEKMDMETGRWVPM------GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406 (616)
Q Consensus 333 ~~~~~~~~~i~~y~v~~~~~~~~~~~~~------~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~ 406 (616)
. .... ....+.-+.+......-... .......+.+.+-.....|.+.|.+.+ .+.++.....+.+...
T Consensus 519 q--~~~~-~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~pA~~~~~l~~~s~ 592 (741)
T KOG3515|consen 519 Q--DEQP-QDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG---SSPPAGLSLVLKAYSA 592 (741)
T ss_pred c--cccc-cchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecC---CCCccccceEEEeccc
Confidence 2 1111 11111111111000000000 001122333333333444555555544 1222211122221111
Q ss_pred CCCCCCCCCCEEE------------EecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCC
Q psy12426 407 FGRPDRPGQPTVT------------DWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDL 473 (616)
Q Consensus 407 ~~~p~~p~~~~~~------------~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L 473 (616)
...-..+.++... ....-+....|..-. .+-.. ...|..-+.. . ..+..+-.+-+-
T Consensus 593 ~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~-~~~~~~~~~~------~----~~~s~~~~~~~~ 661 (741)
T KOG3515|consen 593 LIVTVRTPNMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEG-PHIREKATQQ------G----QTHSSSEWILNH 661 (741)
T ss_pred ccccccCCceeeeccCcccccccceecccccceeecccCCCcccCC-ceEEEeeeec------c----ccccccccccCC
Confidence 1100111111111 112234445555321 11111 1111111111 1 011112223345
Q ss_pred CCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeee
Q psy12426 474 KEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYI 553 (616)
Q Consensus 474 ~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (616)
.++..|.+.|.+.|..|.+..+..+...
T Consensus 662 ~~~~~y~~~c~t~n~lg~~~v~~~~~~~---------------------------------------------------- 689 (741)
T KOG3515|consen 662 IDGSDYENGCTTQNLLGSDHVSGAIHSG---------------------------------------------------- 689 (741)
T ss_pred cchhhhcceeeecccCCCccccceecCC----------------------------------------------------
Confidence 5788899999999999998877654432
Q ss_pred ecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCC
Q psy12426 554 DNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG 601 (616)
Q Consensus 554 ~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~ 601 (616)
+.++.|.++...+.+..+|.|.|.+-. + +|--..|.+.|...+..
T Consensus 690 -t~~~~~~n~~~~~~~~~~i~l~~~p~f-d-gg~~q~f~~~~~~~~~~ 734 (741)
T KOG3515|consen 690 -TASVGPINLTYDNLTYSTISLEWMPGF-D-GGLQQRFFLKYYDLGTM 734 (741)
T ss_pred -cCCCCccceEeeeeeeeeeceeeeecc-c-cccccceeeehhhcCCc
Confidence 457889999999999999999999643 3 57778899998866654
No 18
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.43 E-value=8.1e-13 Score=100.69 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=68.1
Q ss_pred CCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426 6 RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT 85 (616)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~ 85 (616)
..-|..+.+.+|+++.|.|.+.|.|.|.|.|+|+++.+.....|.....+ ...
T Consensus 5 ~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~---------------------------~~~ 57 (92)
T cd05737 5 GGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQ---------------------------GKY 57 (92)
T ss_pred ccCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcC---------------------------CCE
Confidence 34567789999999999999999999999999999998766666554211 113
Q ss_pred CceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.+|.|.++...|.|.|.|.|.|..|.....
T Consensus 58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05737 58 ASLTIKGVSSEDSGKYGIVVKNKYGGETVD 87 (92)
T ss_pred EEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence 479999999999999999999999976543
No 19
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.42 E-value=4.5e-12 Score=96.68 Aligned_cols=89 Identities=26% Similarity=0.457 Sum_probs=76.9
Q ss_pred CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
+|.| ...+.+..+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+........|.|.++...|.|.|+|.|.|.
T Consensus 3 ~~~~-~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 3 PATI-LTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCcc-cccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 4555 345678999999999999999999999999999999887777777766666679999999999999999999999
Q ss_pred CCCceeeEEE
Q psy12426 295 WGTDKGTAKV 304 (616)
Q Consensus 295 ~g~~~~~~~l 304 (616)
.|....++.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9988776654
No 20
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.40 E-value=2.8e-12 Score=96.41 Aligned_cols=86 Identities=26% Similarity=0.411 Sum_probs=70.7
Q ss_pred CceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 295 (616)
Q Consensus 216 P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~ 295 (616)
|.|. ..+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+....++.. . ...|.|.+++.+|.|.|+|.|.|..
T Consensus 2 p~i~-~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~--~--~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 2 ADIN-VKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM--S--GAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CceE-EccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec--C--CCEEEECcCChhhCEEEEEEEEcCC
Confidence 5553 345678899999999999999999999999999887755443332 2 2389999999999999999999999
Q ss_pred CCceeeEEEEE
Q psy12426 296 GTDKGTAKVTV 306 (616)
Q Consensus 296 g~~~~~~~l~v 306 (616)
|.....+.|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd05851 77 GKDKHQARVYV 87 (88)
T ss_pred CceEEEEEEEE
Confidence 99888887766
No 21
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.40 E-value=9.4e-13 Score=99.62 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=66.4
Q ss_pred CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT 81 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~ 81 (616)
|.++...|.+..+.+|+.+.|.|.+.|+|.|.|+|+|++..+...+.+.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~------------------------------- 49 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS------------------------------- 49 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-------------------------------
Confidence 3344456899999999999999999999999999999987654333221
Q ss_pred CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.....|.|.+++..|+|.|.|.|.|..|.....
T Consensus 50 -~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 50 -MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred -EeCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence 124689999999999999999999999976544
No 22
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.40 E-value=1e-12 Score=101.47 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--Ceeeee-----ccceEEEeecCCCCCceeEeeeccCCcc
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHP 73 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p 73 (616)
+|+|. .++++.+.+|+.++|.|.+.|.|.|.|+|+|+ +..+.. .++|....
T Consensus 2 ~p~i~--~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~-------------------- 59 (98)
T cd05870 2 QPHII--QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG-------------------- 59 (98)
T ss_pred CCEEE--eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee--------------------
Confidence 58886 48899999999999999999999999999995 333321 23333221
Q ss_pred ceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 74 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 74 ~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
......|.|.++.+.|+|.|.|.|.|..|....+
T Consensus 60 --------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 93 (98)
T cd05870 60 --------QHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKS 93 (98)
T ss_pred --------cCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeE
Confidence 1123579999999999999999999999976554
No 23
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.40 E-value=1.5e-12 Score=98.87 Aligned_cols=84 Identities=19% Similarity=0.154 Sum_probs=66.5
Q ss_pred cCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426 4 IDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG 83 (616)
Q Consensus 4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~ 83 (616)
|..++|+++++.+|+.+.|.|.+.|+|.|.|.|+|+|..+...+.+.-. + ..
T Consensus 2 ~~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~--~--------------------------~~ 53 (90)
T cd04972 2 IPVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE--T--------------------------TV 53 (90)
T ss_pred ccccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE--e--------------------------cC
Confidence 4457789999999999999999999999999999999877532221000 0 11
Q ss_pred CCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
....|.|.++.+.|.|.|.|.|.|..|....+
T Consensus 54 ~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 54 DIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 23579999999999999999999999976554
No 24
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.39 E-value=2e-12 Score=98.59 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=64.1
Q ss_pred CccCCCCCCceEec---CCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426 2 PHIDRRHLGDIKLS---AGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC 78 (616)
Q Consensus 2 P~i~~~~~~~~~v~---~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~ 78 (616)
|.+.. .|.++.+. +|+.+.|.|.+.|.|.|.|+|+|+|..|...+.+.+..
T Consensus 2 P~f~~-~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~------------------------- 55 (94)
T cd05848 2 PVFVQ-EPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL------------------------- 55 (94)
T ss_pred CeeEE-CCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe-------------------------
Confidence 66664 48887765 47899999999999999999999999887444443332
Q ss_pred cccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCCC
Q psy12426 79 AQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 79 ~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~~ 114 (616)
....|.|.++. +.|.|.|+|.|.|..|....
T Consensus 56 -----~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 56 -----IDGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred -----eCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 13578888874 69999999999999996643
No 25
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.39 E-value=8e-12 Score=93.29 Aligned_cols=83 Identities=29% Similarity=0.524 Sum_probs=71.9
Q ss_pred cceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 302 (616)
..+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++.+.|+|.|+|.|.|..|....+.
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 3567889999999999999999999999999988653 467776666677999999999999999999999999988777
Q ss_pred EEEE
Q psy12426 303 KVTV 306 (616)
Q Consensus 303 ~l~v 306 (616)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 6653
No 26
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.39 E-value=7.7e-12 Score=95.29 Aligned_cols=86 Identities=26% Similarity=0.475 Sum_probs=73.0
Q ss_pred cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426 221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299 (616)
Q Consensus 221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~ 299 (616)
..+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++...|+|.|+|.|.|..|...
T Consensus 6 ~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 6 GLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred cCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 345667899999999999999999999999999998877777666544 4456899999999999999999999999888
Q ss_pred eeEEEEE
Q psy12426 300 GTAKVTV 306 (616)
Q Consensus 300 ~~~~l~v 306 (616)
..+.+.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 7776653
No 27
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.39 E-value=2.4e-12 Score=97.74 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=69.3
Q ss_pred CCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426 6 RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT 85 (616)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~ 85 (616)
...|..+.+.+|+++.|.|.+.|.|.|.+.|+|+++.+...+.|.....+ ...
T Consensus 5 ~~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~---------------------------~~~ 57 (92)
T cd05891 5 GGLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ---------------------------GKY 57 (92)
T ss_pred ccCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC---------------------------CCE
Confidence 34588999999999999999999999999999999988766666655321 112
Q ss_pred CceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.+|.|.++.+.|.|.|.|.|.|..|.....
T Consensus 58 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 58 ASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 479999999999999999999999987655
No 28
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.38 E-value=2.9e-12 Score=95.70 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=63.8
Q ss_pred CceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426 10 GDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG 88 (616)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l 88 (616)
..+.+.+|+.+.|.|.+.|.|.|.|.|+|+++++.. .++|.-.. ......|
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~----------------------------~~~~~~L 54 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVES----------------------------YKDLSSF 54 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEE----------------------------cCCeEEE
Confidence 467899999999999999999999999999998874 34443321 1124689
Q ss_pred EecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 89 KVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.|.++.+.|+|.|.|.|.|..|.....
T Consensus 55 ~I~~~~~~D~G~Y~c~a~N~~G~~~~~ 81 (86)
T cd05894 55 VIEGAEREDEGVYTITVTNPVGEDHAS 81 (86)
T ss_pred EECCCccCcCEEEEEEEEeCCCcEEEE
Confidence 999999999999999999999976543
No 29
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.38 E-value=2.1e-12 Score=96.64 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=65.7
Q ss_pred CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426 7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP 86 (616)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~ 86 (616)
..|++..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+...+.+... ..
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~--------------------------------~~ 51 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--------------------------------AG 51 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe--------------------------------CC
Confidence 4689999999999999999999999999999999988754444322 35
Q ss_pred ceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 87 KGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.|.|.++...|.|.|+|.|.|..|....+
T Consensus 52 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05728 52 DLRITKLSLSDSGMYQCVAENKHGTIYAS 80 (85)
T ss_pred EEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence 78999999999999999999999975443
No 30
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.37 E-value=5e-12 Score=90.83 Aligned_cols=73 Identities=22% Similarity=0.404 Sum_probs=64.5
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+...+ +|.|.+++..|.|.|+|.|.|..|....++.|.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 678999999999999999999999888777777775544 8999999999999999999999999988887764
No 31
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.37 E-value=1.5e-12 Score=93.49 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=58.0
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG 96 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~ 96 (616)
|+++.|.|.+.|.|.|.|+|+|++..+...++|.-. ...+|.|.++++.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~-------------------------------~~g~L~I~~v~~~ 49 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW-------------------------------DDGSLEILNITKL 49 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc-------------------------------CCCEEEECcCChh
Confidence 789999999999999999999999877655555322 2458999999999
Q ss_pred CeEEEEEEEEcCCCCCCCC
Q psy12426 97 NQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 97 ~~~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|+|.|.|..|....+
T Consensus 50 D~G~Y~C~A~N~~G~~~~~ 68 (73)
T cd05852 50 DEGSYTCFAENNRGKANST 68 (73)
T ss_pred HCEEEEEEEECCCCceeEE
Confidence 9999999999999987655
No 32
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.36 E-value=1.7e-12 Score=94.38 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=57.3
Q ss_pred CCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426 16 AGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE 95 (616)
Q Consensus 16 ~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~ 95 (616)
+|+++.|.|.+.|+|.|.|+|+|+|..+.....+.- .....|.|.++.+
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~-------------------------------~~~~~L~I~~v~~ 49 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV-------------------------------LSSGTLRISRVAL 49 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEE-------------------------------ccCCeEEEeeCCH
Confidence 699999999999999999999999998764333211 1245899999999
Q ss_pred CCeEEEEEEEEcCCCCCCCC
Q psy12426 96 GNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 96 ~~~~~y~c~a~n~~g~~~~~ 115 (616)
.|.|.|.|.|.|..|....+
T Consensus 50 ~D~G~Y~C~A~N~~G~~~~~ 69 (74)
T cd05745 50 HDQGQYECQAVNIVGSQRTV 69 (74)
T ss_pred HhCEEEEEEEEeCCCceeEE
Confidence 99999999999999976544
No 33
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.36 E-value=4.7e-12 Score=97.44 Aligned_cols=85 Identities=22% Similarity=0.399 Sum_probs=67.6
Q ss_pred CCccCCCC-CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426 1 APHIDRRH-LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC 78 (616)
Q Consensus 1 ~P~i~~~~-~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~ 78 (616)
||.|...+ +.++.+..|+.+.|.|.+.|.|.|.|.|+|+|..+... ..|.-.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~-------------------------- 54 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN-------------------------- 54 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--------------------------
Confidence 78887553 34668999999999999999999999999999987643 222111
Q ss_pred cccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.....|.|.++...|.|.|.|.|.|..|.....
T Consensus 55 ----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (95)
T cd05730 55 ----EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAE 87 (95)
T ss_pred ----CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence 123569999999999999999999999976544
No 34
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.35 E-value=2.7e-12 Score=99.26 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=67.2
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-----ccceEEEeecCCCCCceeEeeeccCCccce
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIW 75 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w 75 (616)
+|+|. .+.+..+.+|+++.|.|.+.|.|.|.|+|+|++..+.. .|+|....
T Consensus 2 ~P~i~--~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~---------------------- 57 (96)
T cd05732 2 QPKIT--YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRG---------------------- 57 (96)
T ss_pred Cccce--ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeC----------------------
Confidence 58886 47789999999999999999999999999999866542 23332110
Q ss_pred eeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
......|.|.++...|.|.|.|.|.|..|....+
T Consensus 58 ------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 91 (96)
T cd05732 58 ------HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQS 91 (96)
T ss_pred ------CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEE
Confidence 1123579999999999999999999999976544
No 35
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.35 E-value=1.6e-11 Score=92.28 Aligned_cols=83 Identities=28% Similarity=0.494 Sum_probs=70.4
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEe--cCC--ceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVN--DDK--STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~--~~~--~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~ 305 (616)
|+.+.|.|.+.|.|.+.+.|++++..+... .++.+.. .+. .+.|.|.++...|.|.|+|.|.|..|.......|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 678999999999999999999999877543 3555442 122 36899999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy12426 306 VLDIPSPP 313 (616)
Q Consensus 306 v~~~p~~p 313 (616)
|..+|.+|
T Consensus 81 V~~~P~~P 88 (88)
T cd05735 81 VQEPPDPP 88 (88)
T ss_pred EeCCCCCC
Confidence 99988876
No 36
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.35 E-value=4.7e-12 Score=92.56 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=57.8
Q ss_pred CCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426 7 RHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT 85 (616)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~ 85 (616)
+.|+++.|.+|+.+.|+|.+.|+|.| .|.|+|||.++.. .+ ....
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~--------------------------------~~~~ 48 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PP--------------------------------APSP 48 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CC--------------------------------CCCC
Confidence 46899999999999999999999999 7999999998762 11 1123
Q ss_pred CceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426 86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~ 114 (616)
..|.|.++. |.|.|+|.|.|..|....
T Consensus 49 s~L~i~~~~--d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 49 SVLNVPGLN--ETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence 467777764 678999999999996543
No 37
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.34 E-value=2.3e-11 Score=92.26 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=70.4
Q ss_pred CCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 301 (616)
Q Consensus 222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~ 301 (616)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++...|.|.|+|.|.|..|....+
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 34567799999999999999999999999999988765444333334445689999999999999999999999998887
Q ss_pred EEEEE
Q psy12426 302 AKVTV 306 (616)
Q Consensus 302 ~~l~v 306 (616)
+.|.+
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 77653
No 38
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.34 E-value=7.9e-12 Score=90.79 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=63.4
Q ss_pred cCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... ..|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 588999999999999999999999998766555554433 38999999999999999999999999888877654
No 39
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.32 E-value=1.7e-11 Score=88.36 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=61.5
Q ss_pred EEEEEEEeeecCceeEEEECCeeecc-cCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|+|++..+.. ..++.+... .+..+|.|.++...|.|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 46899999999999999999998864 356666544 33458999999999999999999999999988887764
No 40
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.32 E-value=2.3e-11 Score=92.91 Aligned_cols=86 Identities=30% Similarity=0.536 Sum_probs=78.3
Q ss_pred cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426 221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 300 (616)
Q Consensus 221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~ 300 (616)
..+.++.+..|+++.|.|.+.+.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|....
T Consensus 5 ~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~ 84 (90)
T PF07679_consen 5 KKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATA 84 (90)
T ss_dssp EESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEE
T ss_pred EecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEE
Confidence 34578899999999999999999999999999999999888898888888899999999999999999999999888888
Q ss_pred eEEEEE
Q psy12426 301 TAKVTV 306 (616)
Q Consensus 301 ~~~l~v 306 (616)
.+.|.|
T Consensus 85 ~~~l~V 90 (90)
T PF07679_consen 85 SVNLTV 90 (90)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 777764
No 41
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.31 E-value=6.6e-12 Score=95.89 Aligned_cols=84 Identities=18% Similarity=0.447 Sum_probs=70.8
Q ss_pred CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT 81 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~ 81 (616)
|+|. ..+.++.+.+|+.+.|.|.+.|.|.|.|.|+++|..+...+.|.-...
T Consensus 1 P~~~-~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~--------------------------- 52 (90)
T PF07679_consen 1 PVFT-KKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESD--------------------------- 52 (90)
T ss_dssp EEEE-EESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEE---------------------------
T ss_pred CEEE-EecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecc---------------------------
Confidence 5666 448999999999999999999999999999999999987666654421
Q ss_pred CCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426 82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~ 114 (616)
.....|.|.++...|.|.|.|.|.|..|....
T Consensus 53 -~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~ 84 (90)
T PF07679_consen 53 -GGSSSLTIKNVTREDAGTYTCVASNSSGEATA 84 (90)
T ss_dssp -TTEEEEEESSESGGGSEEEEEEEEETTEEEEE
T ss_pred -cceeEEccCCCChhhCEEEEEEEEECCCEEEE
Confidence 13578999999999999999999999886543
No 42
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.31 E-value=4.1e-12 Score=92.55 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=55.5
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG 96 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~ 96 (616)
|+.+.|.|.+.|+|.|.|+|+|+|+++......... ......|.|.++++.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~-----------------------------~~~~~~l~i~~v~~~ 51 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSR-----------------------------KVDGDTIIFSKVQER 51 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceE-----------------------------EecCCEEEECCCCHh
Confidence 789999999999999999999999988632111111 012347889999999
Q ss_pred CeEEEEEEEEcCCCCCCCC
Q psy12426 97 NQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 97 ~~~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|+|.|.|..|....+
T Consensus 52 D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd05868 52 SSAVYQCNASNEYGYLLAN 70 (76)
T ss_pred hCEEEEEEEEcCCCEEEEE
Confidence 9999999999999977655
No 43
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.31 E-value=8.3e-12 Score=94.62 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=63.2
Q ss_pred CCccCCCCCCceEecCCC---eEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426 1 APHIDRRHLGDIKLSAGT---TLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWE 76 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~---~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~ 76 (616)
+|.+.. .|.++.+.++. .+.|.|.+.|+|.|.|+|+|++..+.. .+.| ..
T Consensus 1 ~P~f~~-~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~--~~----------------------- 54 (93)
T cd05849 1 GPVFEE-QPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY--SM----------------------- 54 (93)
T ss_pred CCEEEE-CCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE--EE-----------------------
Confidence 467774 48888777665 899999999999999999999988753 2333 21
Q ss_pred eccccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCCC
Q psy12426 77 KCAQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 77 ~~~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~~ 114 (616)
....|.|.++. ..|.|.|+|.|.|..|....
T Consensus 55 -------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 55 -------VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred -------ECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 13578888885 68999999999999996543
No 44
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.30 E-value=5.9e-12 Score=96.58 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=63.5
Q ss_pred CCceEecCCCeEEEEEEEee-ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426 9 LGDIKLSAGTTLKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK 87 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~ 87 (616)
-..+.+.+|++++|.|.+.| .|+|.|.|+|||.+|...+.+.-...+. ........
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~-----------------------~~~~~~~~ 66 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENE-----------------------SEYRYVSE 66 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEecc-----------------------CcceEEEE
Confidence 45788999999999999999 9999999999999987433322221100 00011367
Q ss_pred eEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426 88 GKVLDLIEGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 88 l~i~~l~~~~~~~y~c~a~n~~g~~~~ 114 (616)
|.|..+.+.|.|.|.|.|.|..|....
T Consensus 67 L~i~~v~~~D~G~Ytc~A~N~~G~~~~ 93 (101)
T cd04975 67 LKLVRLKESEAGTYTFLASNSDASKSL 93 (101)
T ss_pred EEEeecCHhhCeeEEEEEECCCccEEE
Confidence 999999999999999999999996543
No 45
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.30 E-value=1.6e-11 Score=93.66 Aligned_cols=82 Identities=12% Similarity=0.249 Sum_probs=62.8
Q ss_pred CccCCCCCCceEecCC---CeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426 2 PHIDRRHLGDIKLSAG---TTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC 78 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g---~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~ 78 (616)
|.+. +.|+++.+.+| ++|.|.|.+.|+|.|.|+|+|+|..+..........
T Consensus 2 P~f~-~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~------------------------- 55 (94)
T cd05850 2 PVFE-EQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL------------------------- 55 (94)
T ss_pred CeeE-ECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-------------------------
Confidence 6666 45999988777 589999999999999999999999886422211111
Q ss_pred cccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCCC
Q psy12426 79 AQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 79 ~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~~ 114 (616)
..+.|.|.++. ..|.|.|+|.|.|..|....
T Consensus 56 -----~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 56 -----VAGNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred -----ECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 13568887765 59999999999999996543
No 46
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.30 E-value=8.8e-12 Score=89.81 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=54.6
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ 98 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~ 98 (616)
|.|.|.+.|.|.|.|.|+|++..|.. ..+|+....+ ....+|.|.++...|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~---------------------------~g~~~L~I~~~~~~D~ 53 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDN---------------------------SGRVTLLIKNVNKKDA 53 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcC---------------------------CCcEEEEECCCChhhC
Confidence 58999999999999999999998874 3444433211 1124799999999999
Q ss_pred EEEEEEEEcCCCCCCCC
Q psy12426 99 YEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 99 ~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|.|.|..|.....
T Consensus 54 G~Y~C~A~N~~G~~~~~ 70 (75)
T cd05892 54 GWYTVSAVNEAGVATCH 70 (75)
T ss_pred EEEEEEEEcCcCeEEEE
Confidence 99999999999976544
No 47
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.30 E-value=9.6e-12 Score=95.86 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-----ccceEEEeecCCCCCceeEeeeccCCccce
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIW 75 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w 75 (616)
.|+|... +....+..|+.++|.|.+.|.|.|.|+|+|++..+.. .|+|.-..
T Consensus 2 ~p~i~~~-~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~---------------------- 58 (97)
T cd05869 2 KPKITYV-ENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRS---------------------- 58 (97)
T ss_pred CceEEEc-cCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEc----------------------
Confidence 4888633 5555566689999999999999999999999877642 12221110
Q ss_pred eeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
......|.|.++...|.|.|.|.|.|..|....+
T Consensus 59 ------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 92 (97)
T cd05869 59 ------HARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS 92 (97)
T ss_pred ------CccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence 1123579999999999999999999999977554
No 48
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.30 E-value=4.4e-11 Score=87.06 Aligned_cols=73 Identities=32% Similarity=0.519 Sum_probs=65.1
Q ss_pred EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|++++..+..+.++.+........|.|.++...|+|.|+|.|.|..|....++.+.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 6799999999999999999999987777777777667789999999999999999999999999888777654
No 49
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.29 E-value=1.2e-11 Score=90.41 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=55.3
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeeecc---ceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCc
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRP---IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDL 93 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G---~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l 93 (616)
|+++.|.|.+.|.|.|.|+|+|+|..+.... .|. .....|.|.++
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~--------------------------------~~~~~L~I~~~ 48 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH--------------------------------VSSGALILTDV 48 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE--------------------------------eeCCEEEECCC
Confidence 7899999999999999999999999876421 221 12467999999
Q ss_pred ccCCeEEEEEEEEcCCCCCCCC
Q psy12426 94 IEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 94 ~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
++.|.|.|.|.|.|..|.....
T Consensus 49 ~~~D~G~Y~C~a~N~~G~~~~~ 70 (76)
T cd05867 49 QPSDTAVYQCEARNRHGNLLAN 70 (76)
T ss_pred ChhhCEEEEEEEECCCCeEEEE
Confidence 9999999999999999975443
No 50
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.29 E-value=4e-11 Score=91.99 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=70.2
Q ss_pred cceEEEcCCeEEEEEEEee-ecCceeEEEECCeeecccCcEEEEecC-----CceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426 224 SDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDD-----KSTKLKVFDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~l~~~~~g~y~c~a~n~~g~ 297 (616)
..+.+..|+.+.|.|.+.| .|.|.+.|+|+|..+.......+...+ ..+.|.|..+.++|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 5678899999999999999 899999999999988755444333221 2468999999999999999999999999
Q ss_pred ceeeEEEEEe
Q psy12426 298 DKGTAKVTVL 307 (616)
Q Consensus 298 ~~~~~~l~v~ 307 (616)
....+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 8888887764
No 51
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.29 E-value=9.8e-12 Score=94.54 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=61.7
Q ss_pred CCceEecCCCeEEEEEEEeeecC-Ceeeeee-CCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPV-PHVDWRA-GGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT 85 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~-~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~ 85 (616)
|.+..+.+|+++.|.|.+.|.|. |.|+|+| ++..+.. ..+|.-... ....
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~---------------------------~~~~ 59 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRN---------------------------DDYS 59 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeC---------------------------CCCc
Confidence 77778999999999999999995 7999998 7776654 223332211 1113
Q ss_pred CceEecCcccCCeEEEEEEEEcCC-CCCCCC
Q psy12426 86 PKGKVLDLIEGNQYEFRVLAVNKG-GPGEPS 115 (616)
Q Consensus 86 ~~l~i~~l~~~~~~~y~c~a~n~~-g~~~~~ 115 (616)
..|.|.++.+.|.|.|+|.|.|.. |.+..+
T Consensus 60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 60 STLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred eEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 589999999999999999999986 665544
No 52
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.29 E-value=6.2e-11 Score=91.18 Aligned_cols=84 Identities=18% Similarity=0.344 Sum_probs=70.1
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 301 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~ 301 (616)
..+..+..|+.+.|.|.+.|.|.+.+.|++++..+... .++... .....|.|.++...|.|.|+|.|.|..|....+
T Consensus 10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (95)
T cd05730 10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAE 87 (95)
T ss_pred ccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence 34567889999999999999999999999999887654 344333 233479999999999999999999999998888
Q ss_pred EEEEEec
Q psy12426 302 AKVTVLD 308 (616)
Q Consensus 302 ~~l~v~~ 308 (616)
+.|.|..
T Consensus 88 ~~L~V~~ 94 (95)
T cd05730 88 IHLKVFA 94 (95)
T ss_pred EEEEEEe
Confidence 8887753
No 53
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.29 E-value=7.8e-12 Score=87.27 Aligned_cols=60 Identities=15% Similarity=0.282 Sum_probs=50.8
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY 99 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~ 99 (616)
++|.|.+.|.|.|.++|+|||++|... .....|.|.++...|.|
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------------------------------------~~~~~L~i~~v~~~D~G 44 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK------------------------------------HSQHSLQIKDVTEASAG 44 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc------------------------------------CCcCEEEECCCCHHHCE
Confidence 579999999999999999999988621 12458999999999999
Q ss_pred EEEEEEEcCCCCCCCC
Q psy12426 100 EFRVLAVNKGGPGEPS 115 (616)
Q Consensus 100 ~y~c~a~n~~g~~~~~ 115 (616)
.|.|.|.|..|....+
T Consensus 45 ~YtC~a~N~~g~~~~~ 60 (67)
T cd05863 45 TYTLVLWNSAAGLEKR 60 (67)
T ss_pred EEEEEEEECCccEEEE
Confidence 9999999999965433
No 54
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.29 E-value=1e-11 Score=93.81 Aligned_cols=84 Identities=35% Similarity=0.622 Sum_probs=70.4
Q ss_pred CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCc-eEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPW-EKACIVPANITATSVPDLKEGEEYEFRVIAVNKG 489 (616)
Q Consensus 411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~-~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~ 489 (616)
++|.++++..++.+++.|.|..|. ..+..+.+|.|+|+..++.. ............++|.+|.|++.|.|+|+|+|..
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred CcCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 367889999999999999999876 55667999999999887732 3334455667799999999999999999999999
Q ss_pred CCCCCC
Q psy12426 490 GPGEPS 495 (616)
Q Consensus 490 G~g~~s 495 (616)
|.|++|
T Consensus 80 g~g~~S 85 (85)
T PF00041_consen 80 GEGPPS 85 (85)
T ss_dssp EEEEEE
T ss_pred cCcCCC
Confidence 988764
No 55
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.28 E-value=6.6e-11 Score=89.48 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=68.7
Q ss_pred ccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299 (616)
Q Consensus 220 ~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~ 299 (616)
...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........ ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 5 ~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 80 (88)
T cd04968 5 VVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISM----SGAVLKIPNIQFEDEGTYECEAENIKGKDT 80 (88)
T ss_pred EECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEE----eCCEEEECCCCcccCEEEEEEEEECCCcEE
Confidence 4445778889999999999999999999999998876654433321 224899999999999999999999999988
Q ss_pred eeEEEEE
Q psy12426 300 GTAKVTV 306 (616)
Q Consensus 300 ~~~~l~v 306 (616)
....|.|
T Consensus 81 ~~~~l~V 87 (88)
T cd04968 81 HQGRIYV 87 (88)
T ss_pred EEEEEEE
Confidence 8877765
No 56
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.28 E-value=1.2e-11 Score=96.88 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=61.8
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee----ccceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWE 76 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~ 76 (616)
||.|... |.++.+.+|+.+.|.|.+.|+|.|.|+|+|+|..+.. .+.......+
T Consensus 1 ~P~i~~~-p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~--------------------- 58 (100)
T cd07693 1 PPRIVEH-PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPS--------------------- 58 (100)
T ss_pred CCeEEec-CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecC---------------------
Confidence 7888854 8999999999999999999999999999999988763 1111111000
Q ss_pred eccccCCCCCceEe--cCcccCCeEEEEEEEEcCCCCCCC
Q psy12426 77 KCAQTEGDTPKGKV--LDLIEGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 77 ~~~~~~~~~~~l~i--~~l~~~~~~~y~c~a~n~~g~~~~ 114 (616)
.....+.+ ..+...|.|.|.|.|.|..|....
T Consensus 59 ------~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s 92 (100)
T cd07693 59 ------GSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS 92 (100)
T ss_pred ------CcEEEEEeeccCCCcCcCEEEEEEEEccccceec
Confidence 00111122 234689999999999999997543
No 57
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.28 E-value=2.5e-11 Score=93.73 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=68.2
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK 77 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~ 77 (616)
||.|. . +..+.+.+|+.+.|.|.+.|.|.| .|.|++++..+.. .++|.-.....
T Consensus 2 pp~i~-~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~--------------------- 58 (98)
T cd05758 2 PPIIT-S-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS--------------------- 58 (98)
T ss_pred CCeEc-C-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecC---------------------
Confidence 67775 3 667889999999999999999999 5999999998864 35665542110
Q ss_pred ccccCCCCCceEecCcccCC-eEEEEEEEEcCCCCCCCC
Q psy12426 78 CAQTEGDTPKGKVLDLIEGN-QYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 78 ~~~~~~~~~~l~i~~l~~~~-~~~y~c~a~n~~g~~~~~ 115 (616)
.......|.|.++...| .|.|.|.|.|..|.....
T Consensus 59 ---~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~ 94 (98)
T cd05758 59 ---PGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAI 94 (98)
T ss_pred ---CCceEEEEEECCccccccceeEEEEEEcCCCcccEE
Confidence 01112479999999955 899999999999986554
No 58
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.28 E-value=3.8e-11 Score=86.68 Aligned_cols=73 Identities=26% Similarity=0.409 Sum_probs=60.9
Q ss_pred EEEEEEEeeecCceeEEEECCeeecc-cCcEEEEecC-CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|+|++..+.. ..++.+...+ ....|.|.++.++|.|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 46899999999999999999988764 3566665443 3347999999999999999999999999988887754
No 59
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.28 E-value=2.1e-11 Score=91.93 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=65.0
Q ss_pred CCccC-CCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426 1 APHID-RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA 79 (616)
Q Consensus 1 ~P~i~-~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~ 79 (616)
.|.|. -..++++.+.+|++|+|.|.+.|. .|.|.|+|++..+. .+.+.-
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~-~~~~~~---------------------------- 50 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLV-PPRLQL---------------------------- 50 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECC-CCCEEE----------------------------
Confidence 47773 334668899999999999999999 99999999998775 233211
Q ss_pred ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~ 114 (616)
......|.|.++.+.|.|.|+|.|.|..|....
T Consensus 51 --~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 51 --SNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred --eCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 112458999999999999999999999996543
No 60
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.27 E-value=4.6e-11 Score=85.80 Aligned_cols=71 Identities=31% Similarity=0.606 Sum_probs=60.8
Q ss_pred eEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 233 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 233 ~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
++.|.|.+.|.|.|.+.|++++..+....++.+...+ .|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 3679999999999999999999988766666665444 6888899999999999999999999888877754
No 61
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.27 E-value=5e-11 Score=89.17 Aligned_cols=81 Identities=27% Similarity=0.501 Sum_probs=69.3
Q ss_pred CCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 301 (616)
Q Consensus 222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~ 301 (616)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++.... ..|.|.++...|.|.|+|.|.|..|....+
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA----GDLRITKLSLSDSGMYQCVAENKHGTIYAS 80 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeC----CEEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence 3567889999999999999999999999999999887666655432 289999999999999999999999988877
Q ss_pred EEEEE
Q psy12426 302 AKVTV 306 (616)
Q Consensus 302 ~~l~v 306 (616)
+.|.|
T Consensus 81 ~~l~V 85 (85)
T cd05728 81 AELAV 85 (85)
T ss_pred EEEEC
Confidence 77653
No 62
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.27 E-value=7.7e-12 Score=90.30 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=53.8
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ 98 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~ 98 (616)
|.|.|.+.|.|.|.|+|+|++..+.. .++|.....+ .....|.|.++.+.|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~---------------------------~~~~~L~I~~v~~~D~ 53 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDN---------------------------CGYICLLIQGATKEDA 53 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcC---------------------------CCEEEEEECCCCHHHC
Confidence 58999999999999999999998864 3344332110 0123689999999999
Q ss_pred EEEEEEEEcCCCCCCCC
Q psy12426 99 YEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 99 ~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|.|.|..|....+
T Consensus 54 G~Y~C~A~N~~G~~~~~ 70 (75)
T cd05893 54 GWYTVSAKNEAGIVSCT 70 (75)
T ss_pred EEEEEEEEcCCCEEEEE
Confidence 99999999999977554
No 63
>KOG3515|consensus
Probab=99.26 E-value=2.8e-10 Score=114.85 Aligned_cols=414 Identities=12% Similarity=0.047 Sum_probs=229.2
Q ss_pred eEecCCCeEEEEEE-EeeecCCeeeeeeCCeeeee--------------------ccceE------EEeecCC-CC----
Q psy12426 12 IKLSAGTTLKFDAN-IIGEPVPHVDWRAGGNPLNL--------------------RPIWE------KCAQTEG-DT---- 59 (616)
Q Consensus 12 ~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~l~~--------------------~G~Y~------C~a~n~~-~~---- 59 (616)
..+.+|+.++|.|. ..|+|.++++|+++...+.. .|.+. |.|.|.. ++
T Consensus 216 qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~ta 295 (741)
T KOG3515|consen 216 QSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITA 295 (741)
T ss_pred CcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeee
Confidence 67899999999998 56899999999998655432 44444 9999921 10
Q ss_pred -----------C---------ceeEeeeccCCccc----eeeccccC---------------CCCCceEecCcccCCeEE
Q psy12426 60 -----------P---------KGKVLDLIEGNHPI----WEKCAQTE---------------GDTPKGKVLDLIEGNQYE 100 (616)
Q Consensus 60 -----------~---------~~~v~~~~~~~~p~----w~~~~~~~---------------~~~~~l~i~~l~~~~~~~ 100 (616)
+ ...+.++..+++|. |.+..... .....+.+..+...+.+.
T Consensus 296 v~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~ 375 (741)
T KOG3515|consen 296 VQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQ 375 (741)
T ss_pred cccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCce
Confidence 0 01344444445544 77743331 111234455567788999
Q ss_pred EEEEEEcCCCCCCCCCCCCcceeecCCCcee-------e------------eecC-cccccEEEEeeccCcccccccCCC
Q psy12426 101 FRVLAVNKGGPGEPSDPTAPHIARAKKGKCY-------H------------LVGT-LLKDSIYEQLKRSGLFDQFHLCPI 160 (616)
Q Consensus 101 y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~-------~------------~~g~-p~~~~~~~~~~~~~~~~~~~~~~~ 160 (616)
|.|.|.|.......++...+ .....|..+ . ..+. ..+.+.|.. +.-.+. ....
T Consensus 376 v~c~a~~~~~~~~sss~~~l--~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~--~~~~~~---~~~g 448 (741)
T KOG3515|consen 376 VTCPADNLELAHSSSSSFLL--PVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTF--RLYKLS---QVDG 448 (741)
T ss_pred EEccccccccccccccceec--cccCCchhhhhcccceeeccCccccccCcccCCCcccchhhee--cceecc---cccC
Confidence 99999998865554422221 111111100 0 1133 445677776 422211 1111
Q ss_pred ceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE
Q psy12426 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV 240 (616)
Q Consensus 161 ~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~ 240 (616)
-.. .+........+.++...|.|.|.|+|.|..|..... +. ......|.+ ...........++++.+.|..
T Consensus 449 ~~~--~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~-----~~-~~~~~sp~~-~~~~~~~~~~~~ns~~~~~~q 519 (741)
T KOG3515|consen 449 GVV--RVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAY-----LL-LGVHTSPHN-HHLQDQVEGATGNSVDGECMQ 519 (741)
T ss_pred ceE--EeeccccccccceeeeccCCcceeeeccCCCceeeE-----Ee-eccccCCcc-cccccccccCCCCcccceeec
Confidence 000 111222233455688899999999999998875532 11 223334443 233344556677778899998
Q ss_pred eeecCc--eeEEEECCeeecccCc--EEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCC-CCC
Q psy12426 241 IGEPIP--TKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSP-PEG 315 (616)
Q Consensus 241 ~~~p~~--~~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~-p~~ 315 (616)
...+.- .+.|.+.+........ ...........+.+........+.|.|.+.+..-.+.....+.+...+.. +..
T Consensus 520 ~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~t 599 (741)
T KOG3515|consen 520 DEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRT 599 (741)
T ss_pred cccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccC
Confidence 877654 6789888776532111 11111122335666666666789999999882222233333333322211 111
Q ss_pred C-ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC----CCEEEcc---ccccceEEeccccCCCeEEEEEEEEe
Q psy12426 316 P-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET----GRWVPMG---DVSGTYTRAENLIEGHDYNFRVKAVN 387 (616)
Q Consensus 316 ~-~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~~~~~~~---~~~~~~~~i~~L~~~~~y~~~v~a~n 387 (616)
| +.........++..|.. .+.+...|......... ..+.... .....+..+.+..++..|.+.|.+.|
T Consensus 600 p~~~~~~~g~v~as~~~~a----~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~~~c~t~n 675 (741)
T KOG3515|consen 600 PNMYTAQEGCVNASDDCVA----SGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYENGCTTQN 675 (741)
T ss_pred CceeeeccCccccccccee----cccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhcceeeecc
Confidence 1 22222222234444421 12223333322211110 0001000 12233345556677889999999999
Q ss_pred cCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC
Q psy12426 388 KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG 453 (616)
Q Consensus 388 ~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~ 453 (616)
..|.+.-+ ..+. ....|..|.++.+.......+.|.|. |..+++. .++|.+.|...+.
T Consensus 676 ~lg~~~v~---~~~~---~~t~~~~~~n~~~~~~~~~~i~l~~~-p~fdgg~-~q~f~~~~~~~~~ 733 (741)
T KOG3515|consen 676 LLGSDHVS---GAIH---SGTASVGPINLTYDNLTYSTISLEWM-PGFDGGL-QQRFFLKYYDLGT 733 (741)
T ss_pred cCCCcccc---ceec---CCcCCCCccceEeeeeeeeeeceeee-ecccccc-ccceeeehhhcCC
Confidence 99986542 2222 23567888999999999999999999 5777775 6779998876653
No 64
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.26 E-value=1.2e-10 Score=89.72 Aligned_cols=84 Identities=18% Similarity=0.315 Sum_probs=67.0
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-----CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~ 297 (616)
+....+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++...|.|.|+|.|.|..|.
T Consensus 9 ~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 88 (97)
T cd05869 9 ENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQ 88 (97)
T ss_pred cCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCC
Confidence 34455666899999999999999999999988765432 2344444444568999999999999999999999999
Q ss_pred ceeeEEEEE
Q psy12426 298 DKGTAKVTV 306 (616)
Q Consensus 298 ~~~~~~l~v 306 (616)
...++.|.|
T Consensus 89 ~~~~~~l~v 97 (97)
T cd05869 89 DSQSMYLEV 97 (97)
T ss_pred eeEEEEEEC
Confidence 888877754
No 65
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.26 E-value=1.6e-11 Score=88.18 Aligned_cols=66 Identities=21% Similarity=0.421 Sum_probs=53.6
Q ss_pred eEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426 19 TLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ 98 (616)
Q Consensus 19 ~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~ 98 (616)
+|.|.|.+.|.|.|.|+|+|+|..+.....|.-. ....+.|.++.+.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~-------------------------------~~~~l~i~~v~~~D~ 49 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV-------------------------------KEHNLQVLGLVKSDE 49 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE-------------------------------ecCCEEEEcCCcccC
Confidence 4899999999999999999999887644443221 134678889999999
Q ss_pred EEEEEEEEcCCCCCCCC
Q psy12426 99 YEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 99 ~~y~c~a~n~~g~~~~~ 115 (616)
|.|+|.|.|..|....+
T Consensus 50 G~Y~C~A~N~~G~~~~~ 66 (71)
T cd05723 50 GFYQCIAENDVGNVQAS 66 (71)
T ss_pred EEEEEEEEcCCCEEEEE
Confidence 99999999999986654
No 66
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.25 E-value=3.3e-11 Score=88.62 Aligned_cols=72 Identities=11% Similarity=0.226 Sum_probs=59.4
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG 88 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l 88 (616)
|++..+.+|+.+.|.|.+.|+ .|.|+|+|||.+|.....|.-. ...|
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--------------------------------~~~L 47 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--------------------------------GEEV 47 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--------------------------------CCEE
Confidence 567889999999999999997 5689999999988744443211 3479
Q ss_pred EecCcccCCeEEEEEEEEcCCCCCC
Q psy12426 89 KVLDLIEGNQYEFRVLAVNKGGPGE 113 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~n~~g~~~ 113 (616)
.|.++.+.|+|.|.|.|.|..|...
T Consensus 48 ~I~~~~~~DsG~Y~C~a~n~~g~~~ 72 (79)
T cd04973 48 QIKDAVPRDSGLYACVTSSPSGSDT 72 (79)
T ss_pred EECCCChhhCEEEEEEEeCCCCccc
Confidence 9999999999999999999887643
No 67
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.25 E-value=2.8e-11 Score=88.92 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=57.6
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG 96 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~ 96 (616)
|+.|.|.|.+.|.|.|.|+|+|++..+....+|.-.. ......|.|.++.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~----------------------------~~~~~~L~I~~v~~~ 52 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS----------------------------EGGYGTLTIRDVKES 52 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE----------------------------CCCEEEEEECCCChH
Confidence 7899999999999999999999998876544443321 112457999999999
Q ss_pred CeEEEEEEEEcCCCCCCCC
Q psy12426 97 NQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 97 ~~~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|.|.|.|..|.....
T Consensus 53 D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 53 DQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred HCEEEEEEEEecCCEEEec
Confidence 9999999999999966544
No 68
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.25 E-value=8.2e-11 Score=86.39 Aligned_cols=75 Identities=27% Similarity=0.361 Sum_probs=64.3
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~ 305 (616)
|+++.|.|.+.|.|.|.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 678999999999999999999999888766777776666667999999999999999999999999876554443
No 69
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.25 E-value=9.9e-11 Score=89.06 Aligned_cols=84 Identities=26% Similarity=0.453 Sum_probs=67.0
Q ss_pred CcceEEEcCCeEEEEEEEeeecC-ceeEEEE-CCeeecc-cCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCC-CC
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPI-PTKEWLC-NDITIIS-KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSW-GT 297 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~-~~~~W~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~-g~ 297 (616)
+.+..+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. +.++.+... +..+.|.|.+++..|.|.|+|.|.|.. |.
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~ 86 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE 86 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence 34567889999999999999995 6999998 7766554 445554432 335689999999999999999999986 78
Q ss_pred ceeeEEEEE
Q psy12426 298 DKGTAKVTV 306 (616)
Q Consensus 298 ~~~~~~l~v 306 (616)
...++.|.+
T Consensus 87 ~~~s~~l~v 95 (96)
T cd05865 87 SEATVNVKI 95 (96)
T ss_pred EEEEEEEEE
Confidence 888877765
No 70
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.24 E-value=1.3e-10 Score=89.73 Aligned_cols=83 Identities=20% Similarity=0.321 Sum_probs=67.2
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceeecc-----cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITIIS-----KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 295 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~ 295 (616)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++. +..+.. +.++.+........|.|.+++.+|.|.|+|.|.|..
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 4678899999999999999999999999994 333321 235555544445689999999999999999999999
Q ss_pred CCceeeEEEE
Q psy12426 296 GTDKGTAKVT 305 (616)
Q Consensus 296 g~~~~~~~l~ 305 (616)
|....++.|.
T Consensus 88 G~~~~~~~l~ 97 (98)
T cd05870 88 GGHQKSMYLD 97 (98)
T ss_pred CcceeEEEEe
Confidence 9888777665
No 71
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.24 E-value=1.8e-10 Score=87.39 Aligned_cols=84 Identities=25% Similarity=0.456 Sum_probs=70.6
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 301 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~ 301 (616)
+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+... +....|.|.+++..|+|.|+|.|.|..|.....
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 4567899999999999999999999999999988776666655433 233589999999999999999999999998887
Q ss_pred EEEEE
Q psy12426 302 AKVTV 306 (616)
Q Consensus 302 ~~l~v 306 (616)
+.+.|
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 77653
No 72
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.24 E-value=1.6e-10 Score=86.85 Aligned_cols=82 Identities=23% Similarity=0.484 Sum_probs=68.5
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEE-CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-ee
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KG 300 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~ 300 (616)
+.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|.. ..
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 85 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA 85 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence 46678999999999999999998 899998 4666666677877766767799999999999999999999999875 44
Q ss_pred eEEEE
Q psy12426 301 TAKVT 305 (616)
Q Consensus 301 ~~~l~ 305 (616)
+..|.
T Consensus 86 ~i~l~ 90 (92)
T cd05866 86 TVVLE 90 (92)
T ss_pred EEEEE
Confidence 44443
No 73
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.24 E-value=4.2e-11 Score=90.04 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=61.4
Q ss_pred CCCceEecCCCeEEEEEEEeeecCCeeeeeeC-CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426 8 HLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG-GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP 86 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~ 86 (616)
.|.++.+.+|+++.|.|.+.|.|. .|+|+|+ +..+...++|.-.. .....
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~----------------------------~g~~~ 56 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQK----------------------------EGVRS 56 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEe----------------------------CCCee
Confidence 478899999999999999999998 8999984 66665444443321 11234
Q ss_pred ceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426 87 KGKVLDLIEGNQYEFRVLAVNKGGPGE 113 (616)
Q Consensus 87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~ 113 (616)
.|.|.++...|.|.|+|.|.|..|...
T Consensus 57 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 57 RLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 899999999999999999999998754
No 74
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.23 E-value=8.4e-11 Score=85.17 Aligned_cols=73 Identities=23% Similarity=0.421 Sum_probs=63.5
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+ .|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 678999999999999999999999988777777654433 7999999999999999999999999888877654
No 75
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.23 E-value=2.1e-11 Score=89.54 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=56.6
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG 96 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~ 96 (616)
|+.+.|.|.+.|+|.|.|+|+++|+.+......... ......|.|.+++..
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~-----------------------------~~~~~~L~i~~v~~~ 51 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRR-----------------------------RVDGGTLILSNVQPN 51 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceE-----------------------------EccCCEEEECCCChh
Confidence 789999999999999999999999988643221111 122468999999999
Q ss_pred CeEEEEEEEEcCCCCCCCC
Q psy12426 97 NQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 97 ~~~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|+|.|.|..|....+
T Consensus 52 D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd04978 52 DTAVYQCNASNVHGYLLAN 70 (76)
T ss_pred hCEEEEEEEEccCCeEEEe
Confidence 9999999999999976544
No 76
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.23 E-value=1.4e-11 Score=88.00 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=54.9
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY 99 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~ 99 (616)
|.|.|.+.|.|.|.|+|+|+|..+...+.|... ....|.|.++...|.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~-------------------------------~~~~L~I~~~~~~D~G 49 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS-------------------------------PEGYLAIRDVGVADQG 49 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEEC-------------------------------CCCEEEECcCChhhCE
Confidence 579999999999999999999888756655322 2457999999999999
Q ss_pred EEEEEEEcCCCCCCCC
Q psy12426 100 EFRVLAVNKGGPGEPS 115 (616)
Q Consensus 100 ~y~c~a~n~~g~~~~~ 115 (616)
.|.|.|.|..|....+
T Consensus 50 ~Y~C~a~N~~G~~~~~ 65 (69)
T cd05746 50 RYECVARNTIGYASVS 65 (69)
T ss_pred EEEEEEECCCCcEEEE
Confidence 9999999999976544
No 77
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.22 E-value=4.2e-11 Score=90.40 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=62.7
Q ss_pred CCCceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426 8 HLGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT 85 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~ 85 (616)
.|.++.+.+|+++.|.|.+ .|.|.|.|.|+|+|..+.. .+.|.- ...
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~-------------------------------~~~ 50 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI-------------------------------VDD 50 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE-------------------------------ccC
Confidence 4789999999999999997 7999999999999988764 222211 114
Q ss_pred CceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426 86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~ 114 (616)
..|.|.++...|.|.|+|.|.|..|....
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 51 GNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CEEEEeECCcccCEEEEEEEEeccCceee
Confidence 58999999999999999999999987654
No 78
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.22 E-value=4e-11 Score=85.12 Aligned_cols=65 Identities=18% Similarity=0.361 Sum_probs=50.6
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG 96 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~ 96 (616)
|+.|.|.|.+.|+|.|.|+|+|+++.+.....+ . .....|.|.++.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~-~-------------------------------~~~~~L~i~~~~-- 46 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEM-P-------------------------------VGRNVLELTNIY-- 46 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccce-e-------------------------------cCccEEEEeccc--
Confidence 789999999999999999999999887632221 0 113467888874
Q ss_pred CeEEEEEEEEcCCCCCCCC
Q psy12426 97 NQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 97 ~~~~y~c~a~n~~g~~~~~ 115 (616)
+.|.|.|.|.|..|....+
T Consensus 47 d~G~Y~C~A~N~~G~~~~~ 65 (69)
T cd05739 47 ESANYTCVAISSLGMIEAT 65 (69)
T ss_pred cCeeEEEEEEeCCCEEEEE
Confidence 6899999999999975543
No 79
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.22 E-value=3.3e-11 Score=87.32 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=57.3
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG 96 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~ 96 (616)
|+++.|.|.+.|.|.|.++|+|++..+.....|... ....|.|.++...
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~-------------------------------~~~~L~i~~v~~~ 49 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW-------------------------------PDGSLEILNVTKS 49 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC-------------------------------CCCeEEEccCChh
Confidence 789999999999999999999999987644444321 2357999999999
Q ss_pred CeEEEEEEEEcCCCCCCCC
Q psy12426 97 NQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 97 ~~~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|.|.|.|..|....+
T Consensus 50 D~G~Y~C~a~N~~G~~~~~ 68 (73)
T cd04969 50 DEGKYTCFAENFFGKANST 68 (73)
T ss_pred HCEEEEEEEECCCCceEEE
Confidence 9999999999999977654
No 80
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.21 E-value=5.2e-11 Score=91.50 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=59.1
Q ss_pred CCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccc--eEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426 6 RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPI--WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG 83 (616)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~--Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~ 83 (616)
...|++..+.+|+++.|.|.+.|.|.|.|+|+|||+.+..... |.-.
T Consensus 3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~------------------------------- 51 (95)
T cd05722 3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQL------------------------------- 51 (95)
T ss_pred EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEc-------------------------------
Confidence 3468899999999999999999999999999999998864221 2111
Q ss_pred CCCceEecCc-----ccCCeEEEEEEEEcC-CCCC
Q psy12426 84 DTPKGKVLDL-----IEGNQYEFRVLAVNK-GGPG 112 (616)
Q Consensus 84 ~~~~l~i~~l-----~~~~~~~y~c~a~n~-~g~~ 112 (616)
..+.+.|.++ .+.|.|.|+|.|.|. .|..
T Consensus 52 ~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 52 PNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred cCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 1234555555 588999999999999 8865
No 81
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.21 E-value=2.4e-10 Score=88.23 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=68.5
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-----CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~ 297 (616)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.+++..|.|.|+|.|.|..|.
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 87 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG 87 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence 45678889999999999999999999999988655432 2444444445578999999999999999999999999
Q ss_pred ceeeEEEEE
Q psy12426 298 DKGTAKVTV 306 (616)
Q Consensus 298 ~~~~~~l~v 306 (616)
...++.|.+
T Consensus 88 ~~~s~~l~v 96 (96)
T cd05732 88 DQQSMYLEV 96 (96)
T ss_pred cEEEEEEeC
Confidence 887777653
No 82
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.21 E-value=1.9e-10 Score=83.41 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=60.4
Q ss_pred EEEEEEEeeecCceeEEEECCeeecc-cCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|++++..+.. ..++.+... .+...|.|.+++..|.|.|+|.|.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 46899999999999999999988864 345655443 34457999999999999999999999999888777653
No 83
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.20 E-value=2.4e-10 Score=85.11 Aligned_cols=79 Identities=16% Similarity=0.298 Sum_probs=63.6
Q ss_pred CeEEEEEEEeeecCc--eeEEEECCeeeccc---CcEEE-EecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426 232 SNFEFDINVIGEPIP--TKEWLCNDITIISK---DRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305 (616)
Q Consensus 232 ~~~~l~c~~~~~p~~--~~~W~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~ 305 (616)
+++.|.|.+.|.|.| .+.|++++..+... .++.. ........|.|.+++..|.|.|+|.|.|..|....++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 368899999999987 58999999887532 23322 2222345899999999999999999999999999999999
Q ss_pred EecCC
Q psy12426 306 VLDIP 310 (616)
Q Consensus 306 v~~~p 310 (616)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
No 84
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.20 E-value=1.6e-10 Score=84.09 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=60.1
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecccCc-EEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
|+.+.|.|.+.|.|.|.+.|++++..+..... ......+ ..|.|.++++.|.|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 57889999999999999999999998753321 1111222 37899999999999999999999999988888776
No 85
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.20 E-value=2.5e-10 Score=83.42 Aligned_cols=72 Identities=29% Similarity=0.437 Sum_probs=60.1
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecccC---cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKD---RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
|+.+.|.|.+.|.|.|.+.|++++..+.... ++.+. ...|.|.++++.|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS----SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee----CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6789999999999999999999998875432 33221 238999999999999999999999999888877765
No 86
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.20 E-value=3.1e-11 Score=85.49 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=52.0
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY 99 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~ 99 (616)
+.|.|.+.|.|.|.|+|+|||++|.....+ .....|.|.++.+.|.|
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~---------------------------------~~~~~L~I~~v~~~D~G 47 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF---------------------------------KRGVHLTIYEVTEKDAG 47 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE---------------------------------ccCCEEEECcCCHHHCE
Confidence 479999999999999999999988733221 01347999999999999
Q ss_pred EEEEEEEcCCCCCCCC
Q psy12426 100 EFRVLAVNKGGPGEPS 115 (616)
Q Consensus 100 ~y~c~a~n~~g~~~~~ 115 (616)
.|.|.|.|..|.....
T Consensus 48 ~YtC~a~N~~G~~~~~ 63 (70)
T cd05864 48 NYTVVLTNPITKEEQR 63 (70)
T ss_pred EEEEEEEECCCceeeE
Confidence 9999999999976554
No 87
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.20 E-value=8.4e-11 Score=85.56 Aligned_cols=69 Identities=17% Similarity=0.362 Sum_probs=55.9
Q ss_pred eEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426 19 TLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ 98 (616)
Q Consensus 19 ~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~ 98 (616)
.+.|.|.+.|.|.|.++|+|+|..+.....|.-.. ......|.|.++.+.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~----------------------------~~~~~~L~I~~~~~~D~ 52 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET----------------------------TASSTSLVIKNAERSDS 52 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE----------------------------CCCeEEEEECCCCcCcC
Confidence 47899999999999999999999886555543331 12246899999999999
Q ss_pred EEEEEEEEcCCCCCCCC
Q psy12426 99 YEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 99 ~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|.|.|..|....+
T Consensus 53 G~Y~C~a~N~~G~~~~~ 69 (74)
T cd05748 53 GKYTLTLKNPAGEKSAT 69 (74)
T ss_pred EEEEEEEECCCccEEEE
Confidence 99999999999976543
No 88
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.20 E-value=2.1e-10 Score=88.21 Aligned_cols=83 Identities=24% Similarity=0.258 Sum_probs=68.6
Q ss_pred ceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec------CCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426 225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND------DKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 298 (616)
Q Consensus 225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~ 298 (616)
...+..|+.+.|.|.+.|.|.|.+.|+|++..+..+.+...... ...+.|.|.++...|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 46678899999999999999999999999999875554332211 123589999999999999999999999998
Q ss_pred eeeEEEEEe
Q psy12426 299 KGTAKVTVL 307 (616)
Q Consensus 299 ~~~~~l~v~ 307 (616)
..++.+.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888887764
No 89
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.19 E-value=4.2e-11 Score=85.81 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=52.3
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY 99 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~ 99 (616)
|+|.|.+.|.|.|.++|+|||..|.....| .....+|.|.++.+.|+|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~--------------------------------~~~~~~L~I~~v~~~D~G 48 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT--------------------------------KKSGHSLTIKDVTEEDAG 48 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--------------------------------EcCCCEEEECcCCHHHCE
Confidence 579999999999999999999988744332 112468999999999999
Q ss_pred EEEEEEEcCCCCCCC
Q psy12426 100 EFRVLAVNKGGPGEP 114 (616)
Q Consensus 100 ~y~c~a~n~~g~~~~ 114 (616)
.|.|.|.|..|....
T Consensus 49 ~YtC~a~N~~g~~~~ 63 (71)
T cd04976 49 NYTVVLTNKQAKLEK 63 (71)
T ss_pred EEEEEEEcCCccEEE
Confidence 999999999886543
No 90
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.18 E-value=5.3e-10 Score=87.72 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=66.2
Q ss_pred cCCeEEEEEEEeeecCceeEEEECCeeecc-cCcEEEEec----CCceEEEecCCC-CCCcEEEEEEEEcCCCCceeeEE
Q psy12426 230 AGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND----DKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDKGTAK 303 (616)
Q Consensus 230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~----~~~~~l~i~~l~-~~~~g~y~c~a~n~~g~~~~~~~ 303 (616)
.|..+.|.|.+.|.|.+.+.|++++..+.. +.++.+... .....|.|.++. ..|.|.|+|.|.|..|.......
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 457899999999999999999999988753 335543321 123689999997 58999999999999999999999
Q ss_pred EEEecCC
Q psy12426 304 VTVLDIP 310 (616)
Q Consensus 304 l~v~~~p 310 (616)
|.+..+|
T Consensus 102 L~~~~~p 108 (109)
T cd05773 102 LVSTSRP 108 (109)
T ss_pred EEecCCC
Confidence 9988776
No 91
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.18 E-value=1.2e-10 Score=83.23 Aligned_cols=68 Identities=21% Similarity=0.390 Sum_probs=58.4
Q ss_pred EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l 304 (616)
+.|.|.+.|.|.|.+.|++++..+....++.+... ..|.|.++...|.|.|+|.|.|..|....+..|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 46899999999999999999988876666665443 389999999999999999999999998777655
No 92
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.18 E-value=6.4e-11 Score=86.57 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=52.7
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ 98 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~ 98 (616)
|+|.|.+.|.|.|.|+|+|+|.++... +.|... .....|.|.++.+.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~------------------------------~~~~~L~I~~~~~~D~ 50 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS------------------------------SKERTLTLRSAGPDDS 50 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe------------------------------CCCCEEEEeeCCcccC
Confidence 589999999999999999999988632 233221 1235899999999999
Q ss_pred EEEEEEEEcCCCCCCCC
Q psy12426 99 YEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 99 ~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|.|.|..|....+
T Consensus 51 G~Y~C~a~N~~G~~~s~ 67 (77)
T cd05760 51 GLYYCCAHNAFGSVCSS 67 (77)
T ss_pred EEEEEEEEeCCCeEeeC
Confidence 99999999999976443
No 93
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.18 E-value=8.5e-11 Score=90.39 Aligned_cols=83 Identities=14% Similarity=0.090 Sum_probs=62.1
Q ss_pred ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEe
Q psy12426 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV 90 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i 90 (616)
...+..|+.+.|.|.+.|.|+|.|+|+|||.+|...........+. +. .......|.|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~-------~~---------------~~~~~s~L~I 69 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHN-------VQ---------------ETRYVSKLKL 69 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEecccc-------cc---------------ceeeccEEEE
Confidence 6778999999999999999999999999999987433221111000 00 0111368999
Q ss_pred cCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 91 LDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 91 ~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.++.+.|.|.|.|.|.|..|....+
T Consensus 70 ~~v~~~D~G~Ytc~A~N~~g~~~~t 94 (101)
T cd05859 70 IRAKEEDSGLYTALAQNEDAVKSYT 94 (101)
T ss_pred eeCCHHHCEEEEEEEEcCCceEEEE
Confidence 9999999999999999998875443
No 94
>KOG0196|consensus
Probab=99.18 E-value=8.1e-10 Score=109.89 Aligned_cols=145 Identities=24% Similarity=0.319 Sum_probs=101.8
Q ss_pred CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceE-------eEee----cCCccEEEcCCCCCC
Q psy12426 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK-------ACIV----PANITATSVPDLKEG 476 (616)
Q Consensus 408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~-------~~~~----~~~~~~~~l~~L~p~ 476 (616)
.+|++|.++... ++.+++.|.|.+|.+.++-.-..|.+.++.-...-.. ..-. .-.....++.+|.|.
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah 408 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH 408 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence 578899888766 8999999999999887776666788887665421000 1111 123678999999999
Q ss_pred CeEEEEEEEEcCCCC-CCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeec
Q psy12426 477 EEYEFRVIAVNKGGP-GEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDN 555 (616)
Q Consensus 477 t~Y~~~v~a~n~~G~-g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (616)
+.|.|.|.|+|..-. ++.......+ ..++...
T Consensus 409 ~~YTFeV~AvNgVS~lsp~~~~~a~v-----------------------------------------------nItt~qa 441 (996)
T KOG0196|consen 409 TNYTFEVEAVNGVSDLSPFPRQFASV-----------------------------------------------NITTNQA 441 (996)
T ss_pred cccEEEEEEeecccccCCCCCcceeE-----------------------------------------------Eeecccc
Confidence 999999999998632 2211111111 1122223
Q ss_pred CCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCC
Q psy12426 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG 601 (616)
Q Consensus 556 ~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~ 601 (616)
.|.+-..++....+.++|+|+|..|..+ ||.|.-|+|.|.+++.+
T Consensus 442 ~ps~V~~~r~~~~~~~sitlsW~~p~~p-ng~ildYEvky~ek~~~ 486 (996)
T KOG0196|consen 442 APSPVSVLRQVSRTSDSITLSWSEPDQP-NGVILDYEVKYYEKDED 486 (996)
T ss_pred CCCccceEEEeeeccCceEEecCCCCCC-CCcceeEEEEEeecccc
Confidence 3444445678888999999999998766 89999999999988643
No 95
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.16 E-value=2.8e-10 Score=83.51 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
|+.+.|.|.+.|.|.|.+.|++++..+...... .........|.|.+++..|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 678999999999999999999999887644322 111222358999999999999999999999999888887765
No 96
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.16 E-value=1.9e-10 Score=87.44 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=61.0
Q ss_pred CccCCCCCCceEecCC---CeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426 2 PHIDRRHLGDIKLSAG---TTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC 78 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g---~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~ 78 (616)
|.+. ++|.++.+.+| +.+.|.|.+.|+|.|.|+|+|++..+.....+.+..
T Consensus 2 P~f~-~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~------------------------- 55 (91)
T cd04967 2 PVFE-EQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL------------------------- 55 (91)
T ss_pred CeeE-eCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-------------------------
Confidence 5555 45888877655 579999999999999999999999885322222222
Q ss_pred cccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCC
Q psy12426 79 AQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGE 113 (616)
Q Consensus 79 ~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~ 113 (616)
....|.|.++. ..|+|.|+|.|.|..|...
T Consensus 56 -----~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 56 -----VGGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred -----ECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 13467888776 4899999999999999643
No 97
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.16 E-value=1.4e-10 Score=87.17 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE 95 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~ 95 (616)
|+.++|.|.+.|.|+|.|+|+|++..+.. ..+|.-...... ......|.|.++..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~------------------------~~~~s~L~I~~~~~ 56 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVG------------------------DEVISTLQILPTVR 56 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCC------------------------CcEEEEEEECCCCc
Confidence 89999999999999999999999987753 345544421100 11125799999999
Q ss_pred CCeEEEEEEEEcCCCCCCCC
Q psy12426 96 GNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 96 ~~~~~y~c~a~n~~g~~~~~ 115 (616)
.|.|.|.|.|.|..|.....
T Consensus 57 ~D~G~YtC~A~N~~G~~~~~ 76 (88)
T cd05735 57 EDSGFFSCHAINSYGEDRGI 76 (88)
T ss_pred ccCEEEEEEEEcCCCcceEE
Confidence 99999999999999987765
No 98
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.16 E-value=2.6e-10 Score=79.61 Aligned_cols=65 Identities=22% Similarity=0.336 Sum_probs=54.3
Q ss_pred EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|+|+|..+... .....|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 368999999999999999999887521 23349999999999999999999999997766665554
No 99
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.16 E-value=1.6e-10 Score=86.96 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=59.9
Q ss_pred ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEe
Q psy12426 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV 90 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i 90 (616)
.+.|.+|+.+.|.|.+.|.|.|.|+|+|+|..+.....+.=. .+ ......|.|
T Consensus 3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~----------~~-----------------~~~~~~l~i 55 (85)
T cd05857 3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGY----------KV-----------------RNQHWSLIM 55 (85)
T ss_pred cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeee----------EE-----------------eCCceEEEE
Confidence 356889999999999999999999999999988642221000 00 012346889
Q ss_pred cCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 91 LDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 91 ~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.++.+.|.|.|.|.|.|..|....+
T Consensus 56 ~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05857 56 ESVVPSDKGNYTCVVENEYGSINHT 80 (85)
T ss_pred ccCCcccCEEEEEEEEeCCCEEEEE
Confidence 9999999999999999999976544
No 100
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.16 E-value=4.2e-10 Score=84.62 Aligned_cols=81 Identities=26% Similarity=0.362 Sum_probs=65.7
Q ss_pred eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEE-EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l 304 (616)
..+..|+.+.|.|.+.|.|.|.+.|++++..+..+.+.. .........|.|.++.+.|.|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 457789999999999999999999999999886554331 1222334579999999999999999999999998887776
Q ss_pred EE
Q psy12426 305 TV 306 (616)
Q Consensus 305 ~v 306 (616)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 53
No 101
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.16 E-value=3.6e-10 Score=83.09 Aligned_cols=77 Identities=16% Similarity=0.353 Sum_probs=64.0
Q ss_pred cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 303 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~ 303 (616)
....+.+|+.+.|.|.+.+. .+.+.|++++..+..+.++.+.. ..|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~----~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITG----EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeC----CEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 45678899999999999986 56899999999887666665542 28999999999999999999999888766665
Q ss_pred EE
Q psy12426 304 VT 305 (616)
Q Consensus 304 l~ 305 (616)
+.
T Consensus 77 v~ 78 (79)
T cd04973 77 VN 78 (79)
T ss_pred Ee
Confidence 54
No 102
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.15 E-value=2.7e-10 Score=89.36 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=64.2
Q ss_pred CCccCCCCCCceEec---CCCeEEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426 1 APHIDRRHLGDIKLS---AGTTLKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWE 76 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~---~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~ 76 (616)
||+|...+....++. .|+.+.|.|.+.|+|.|.++|+|||..|... .+|.-.....
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~-------------------- 63 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHT-------------------- 63 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeecc--------------------
Confidence 688864433233333 4589999999999999999999999988642 2443221000
Q ss_pred eccccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCCCC
Q psy12426 77 KCAQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 77 ~~~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.......|.|.++. +.|.|.|.|.|.|..|.....
T Consensus 64 ----~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~ 99 (109)
T cd05773 64 ----GTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD 99 (109)
T ss_pred ----CccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence 01113578999997 689999999999999987544
No 103
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.15 E-value=1.6e-10 Score=83.81 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=53.0
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ 98 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~ 98 (616)
|+|.|.+.|.|.|.|.|+|++..+.. ..+|.-.. + .....+|.|.++.+.|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~-~--------------------------~~~~~~L~I~~~~~~D~ 53 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ-D--------------------------NCGRICLLIQNANKEDA 53 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE-c--------------------------CCCeEEEEECCCCcccC
Confidence 57999999999999999999998874 23332211 0 01123699999999999
Q ss_pred EEEEEEEEcCCCCCCCC
Q psy12426 99 YEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 99 ~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|.|.|..|.....
T Consensus 54 G~Y~C~a~N~~G~~~~~ 70 (75)
T cd05744 54 GWYTVSAVNEAGVVSCN 70 (75)
T ss_pred EEEEEEEEcCCCcEEEE
Confidence 99999999999976543
No 104
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.15 E-value=1.4e-10 Score=83.76 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=52.3
Q ss_pred EEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeEEE
Q psy12426 22 FDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 101 (616)
Q Consensus 22 l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~y 101 (616)
|.|.+.|+|.|.|+|+|||++|..+....... ... ........|.|.++...|.|.|
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~-----------~~~------------~~~~~~~~L~i~~~~~~D~G~Y 59 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKI-----------HVI------------NNTEYHGCLQLDNPTHLNNGIY 59 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeee-----------Eee------------cccceEEEEEECCCCcccCEEE
Confidence 68999999999999999999997433221110 000 0011135799999999999999
Q ss_pred EEEEEcCCCCCCCC
Q psy12426 102 RVLAVNKGGPGEPS 115 (616)
Q Consensus 102 ~c~a~n~~g~~~~~ 115 (616)
.|.|.|..|.....
T Consensus 60 tC~A~N~~G~~~~~ 73 (79)
T cd05855 60 TLVAKNEYGEDEKN 73 (79)
T ss_pred EEEEEcCCcccceE
Confidence 99999999977654
No 105
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.14 E-value=3.6e-10 Score=80.21 Aligned_cols=68 Identities=22% Similarity=0.411 Sum_probs=55.2
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l 304 (616)
|+.+.|.|.+.|.|.|.+.|++++..+....++.. ....|.|.++. |.|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 57899999999999999999999988765444332 22378899975 7899999999999987776655
No 106
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.14 E-value=6.1e-10 Score=84.02 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=65.0
Q ss_pred cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-e
Q psy12426 221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-K 299 (616)
Q Consensus 221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~ 299 (616)
..+.+..+.+|+.+.|.|.+.|. .|.+.|++++..+.. .++.+.. ....|.|.+++..|.|.|+|.|.|..|.. +
T Consensus 8 ~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 8 NSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRLQLSN--DNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred cccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCEEEeC--CCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 34456788999999999999999 999999999988754 3444432 33489999999999999999999999975 3
Q ss_pred eeEEEEE
Q psy12426 300 GTAKVTV 306 (616)
Q Consensus 300 ~~~~l~v 306 (616)
..+.|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 3444544
No 107
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.14 E-value=1.8e-10 Score=83.54 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=51.1
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCC
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN 97 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~ 97 (616)
++|.|.+.|+|.|.|+|+|++..+.. .++|.- .....|.|.++++.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~-------------------------------~~~g~L~i~~~~~~D 49 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ-------------------------------LRSGALQIENSEESD 49 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE-------------------------------cCCcEEEECCCChhh
Confidence 57999999999999999999987752 334321 124578999999999
Q ss_pred eEEEEEEEEcCCCCCC
Q psy12426 98 QYEFRVLAVNKGGPGE 113 (616)
Q Consensus 98 ~~~y~c~a~n~~g~~~ 113 (616)
.|.|+|.|.|..|...
T Consensus 50 ~G~Y~C~a~N~~G~~~ 65 (74)
T cd05738 50 QGKYECVATNSAGTRY 65 (74)
T ss_pred CEEEEEEEECCCCceE
Confidence 9999999999999753
No 108
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.13 E-value=4.5e-10 Score=82.44 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=63.8
Q ss_pred CeEEEEEEEeeec--CceeEEEECCeeecc---cCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426 232 SNFEFDINVIGEP--IPTKEWLCNDITIIS---KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305 (616)
Q Consensus 232 ~~~~l~c~~~~~p--~~~~~W~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~ 305 (616)
+++.|.|.+.+.+ .+.+.|++++..+.. +.++..... .....|.|.+++..|+|.|+|.|.|..+....++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 3678999998754 679999999999852 234444221 2334899999999999999999999999999999999
Q ss_pred EecCC
Q psy12426 306 VLDIP 310 (616)
Q Consensus 306 v~~~p 310 (616)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 98776
No 109
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.13 E-value=3.4e-10 Score=81.25 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=56.9
Q ss_pred EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|++++..+.... .... .....|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 3689999999999999999988765432 2222 23349999999999999999999999999888777765
No 110
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.13 E-value=3.9e-10 Score=85.62 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=58.2
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeee-CCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRA-GGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK 87 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~-~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~ 87 (616)
|....+.+|+++.|.|.+.|.|. .|+|++ ++..+...+.+.-.. + ......
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~-~--------------------------~~~~~~ 58 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQ-N--------------------------DDVRST 58 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEe-C--------------------------CCCEEE
Confidence 77899999999999999999975 999998 566555434432221 0 112358
Q ss_pred eEecCcccCCeEEEEEEEEcCCCC
Q psy12426 88 GKVLDLIEGNQYEFRVLAVNKGGP 111 (616)
Q Consensus 88 l~i~~l~~~~~~~y~c~a~n~~g~ 111 (616)
|.|.++...|.|.|+|.|.|..|.
T Consensus 59 L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 59 LTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEEecCCcccCEEEEEEEEcCCCC
Confidence 999999999999999999998664
No 111
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.12 E-value=1.3e-10 Score=84.45 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=55.7
Q ss_pred CccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ 80 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~ 80 (616)
|.|.+. |+...+.+|++|+|+|.+.|.|.+ .++|+|||..|..
T Consensus 1 ~vv~~~-P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------------------------------- 44 (78)
T cd05752 1 AVVSLD-PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------------------------------- 44 (78)
T ss_pred CeEEeC-CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----------------------------------
Confidence 566655 888889999999999999998874 6999999987741
Q ss_pred cCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNK 108 (616)
Q Consensus 81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~ 108 (616)
....|.|.++ ..|+|.|+|.|.|.
T Consensus 45 ---~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 45 ---TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred ---cCCeEEEeec-ccCCEEeEEECCCC
Confidence 1357888889 99999999999864
No 112
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.12 E-value=6.7e-10 Score=81.49 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=57.5
Q ss_pred EEEEEeeecCceeEEEECCeeecccCcEEEEe-------cCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 236 FDINVIGEPIPTKEWLCNDITIISKDRFKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 236 l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.+.|.|.|.++|++++..+..+.+..... ......|.|.++...|.|.|+|.|.|..|.......+.+
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 68999999999999999999987665433221 122457999999999999999999999999887776653
No 113
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.11 E-value=5.2e-10 Score=80.14 Aligned_cols=69 Identities=25% Similarity=0.352 Sum_probs=56.7
Q ss_pred EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|++++..+..+.++.. ....|.|.++...|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 36899999999999999999998876544322 2348999999999999999999999998766666554
No 114
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.11 E-value=1.9e-10 Score=84.14 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=49.8
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc----
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE---- 95 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~---- 95 (616)
+.|.|.+.|+|.|.|+|+|||..+.......+.. ....+.|.|..+..
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~----------------------------~~~~g~L~i~~~~~~~~~ 52 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTM----------------------------KPDSGTLVIDNMNGGRAE 52 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEE----------------------------eCCCCEEEEeccCCCCCc
Confidence 5799999999999999999998875321111111 11246778887754
Q ss_pred CCeEEEEEEEEcCCCCCCCC
Q psy12426 96 GNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 96 ~~~~~y~c~a~n~~g~~~~~ 115 (616)
.|.|.|+|.|.|..|.....
T Consensus 53 ~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05733 53 DYEGEYQCYASNELGTAISN 72 (77)
T ss_pred CCCEEEEEEEEcCCCcEEcc
Confidence 68999999999999975443
No 115
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.11 E-value=8.2e-10 Score=79.74 Aligned_cols=70 Identities=23% Similarity=0.403 Sum_probs=56.8
Q ss_pred EEEEEeeecCceeEEEECCeeecccCcEEE--Ee---cCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426 236 FDINVIGEPIPTKEWLCNDITIISKDRFKI--VN---DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305 (616)
Q Consensus 236 l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~---~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~ 305 (616)
+.|.+.|.|.|+++|++++..+..+.+... .. ......|.|.++...|.|.|+|.|.|..|....++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 679999999999999999999976654422 11 12245899999999999999999999999887776654
No 116
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.10 E-value=1.1e-10 Score=88.53 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=53.8
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeee--------ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNL--------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG 88 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~--------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l 88 (616)
|+.|.|.|.+.|+|.|.|.|+|+|..+.. .++|.. .....|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-------------------------------~~~~~L 49 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-------------------------------SQTGDL 49 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-------------------------------CCCCeE
Confidence 78999999999999999999999875421 111111 123579
Q ss_pred EecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 89 KVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.|.++++.|.|.|.|.|.|..|.....
T Consensus 50 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 50 TITNVQRSDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred EEeeCChhhCEEEEEEEEcCCCceEEE
Confidence 999999999999999999999976554
No 117
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.10 E-value=2.5e-10 Score=83.12 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=48.0
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc----
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE---- 95 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~---- 95 (616)
|.|.|.+.|+|.|.|+|+|+|.++.......... ....++|.|..+..
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~----------------------------~~~~g~l~i~~~~~~~~~ 52 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTM----------------------------KPNTGTLVINIMNGEKAE 52 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEE----------------------------eCCCceEEEeccccCCCC
Confidence 5799999999999999999999875321111110 11235677776654
Q ss_pred CCeEEEEEEEEcCCCCCCC
Q psy12426 96 GNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 96 ~~~~~y~c~a~n~~g~~~~ 114 (616)
.|.|.|+|.|.|..|...+
T Consensus 53 ~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 53 AYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CCCEEEEEEEEcCCCeEEe
Confidence 3789999999999997544
No 118
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.09 E-value=7.3e-10 Score=78.48 Aligned_cols=67 Identities=19% Similarity=0.432 Sum_probs=54.8
Q ss_pred EEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 235 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 235 ~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
.|.|.+.|.|.|.+.|++++..+....++ .. ...|.|.++...|.|.|+|.|.|..|.......+.+
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTF--KR---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEE--cc---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 58999999999999999999988654332 21 237999999999999999999999997766555543
No 119
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.09 E-value=1.5e-09 Score=84.81 Aligned_cols=91 Identities=26% Similarity=0.416 Sum_probs=64.6
Q ss_pred CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-----CcEEEEecCCceEEEec--CCCCCCcEEE
Q psy12426 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-----DRFKIVNDDKSTKLKVF--DSKRGDSGIY 287 (616)
Q Consensus 215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~--~l~~~~~g~y 287 (616)
+|.| ...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .+......+....+.+. .+...|.|.|
T Consensus 1 ~P~i-~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRI-VEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeE-EecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 3555 34457788999999999999999999999999999887641 12222223322233332 3368899999
Q ss_pred EEEEEcCCCC-ceeeEEEEE
Q psy12426 288 TLAVKNSWGT-DKGTAKVTV 306 (616)
Q Consensus 288 ~c~a~n~~g~-~~~~~~l~v 306 (616)
+|.|.|..|. .+..+.|.+
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999998 455555554
No 120
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.09 E-value=7.7e-10 Score=83.91 Aligned_cols=76 Identities=25% Similarity=0.390 Sum_probs=62.5
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeee--------cccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 302 (616)
|+.+.|.|.+.+.|.|.+.|++++..+ ....++.+... ..|.|.+++..|.|.|+|.|.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 678999999999999999999987643 12334544333 3799999999999999999999999998899
Q ss_pred EEEEecC
Q psy12426 303 KVTVLDI 309 (616)
Q Consensus 303 ~l~v~~~ 309 (616)
.|.|...
T Consensus 78 ~l~V~~~ 84 (90)
T cd05726 78 YLEVTDV 84 (90)
T ss_pred EEEEeec
Confidence 9988764
No 121
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.08 E-value=1.3e-09 Score=81.69 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=62.5
Q ss_pred CeEEEEEEEeeecCc--eeEEEECCeeecccC---cEE-EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426 232 SNFEFDINVIGEPIP--TKEWLCNDITIISKD---RFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305 (616)
Q Consensus 232 ~~~~l~c~~~~~p~~--~~~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~ 305 (616)
+++.|.|.+.+.|.+ .+.|++++..+.... ++. .........|.|.+++..|+|.|+|.|.|..|....++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 367899999999987 679999998875332 221 11122345899999999999999999999999999999999
Q ss_pred EecCC
Q psy12426 306 VLDIP 310 (616)
Q Consensus 306 v~~~p 310 (616)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
No 122
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.08 E-value=1.2e-09 Score=79.99 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=60.6
Q ss_pred EEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426 235 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307 (616)
Q Consensus 235 ~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~ 307 (616)
.|.|.+.|.|.|.+.|++++..+..+.+..+........|.|.++...|.|.|+|.|.|..|....++.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 5899999999999999999998765543333333444589999999999999999999999999988888775
No 123
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.08 E-value=7.7e-10 Score=83.51 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=68.9
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCCe-eeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPH-VDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK 77 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~ 77 (616)
||.|. ..+.+.+.+|++++|.|.+.+.|+|. |.|..++..|.. +|+|...-...
T Consensus 2 pP~i~--~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~--------------------- 58 (98)
T cd05898 2 PPIIS--SEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTST--------------------- 58 (98)
T ss_pred CCEEe--cCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEcc---------------------
Confidence 78885 46788899999999999998888875 799998887754 57776653211
Q ss_pred ccccCCCCCceEecCcccCC-eEEEEEEEEcCCCCCCCC
Q psy12426 78 CAQTEGDTPKGKVLDLIEGN-QYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 78 ~~~~~~~~~~l~i~~l~~~~-~~~y~c~a~n~~g~~~~~ 115 (616)
..+....|.|.++...| .|.|.|.|.|..|.....
T Consensus 59 ---~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~ 94 (98)
T cd05898 59 ---GSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAI 94 (98)
T ss_pred ---CCCcEEEEEECCCccccCCcEEEEEEEeCCccceEE
Confidence 12345689999998877 789999999999977543
No 124
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.08 E-value=4.3e-10 Score=82.83 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=55.8
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK 87 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~ 87 (616)
|++..|.+|+++.|.|.+.+ |.|.|+|+|||.+|..+ ++|.- ....
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~--------------------------------~~~~ 49 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL--------------------------------YRDG 49 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE--------------------------------ECCc
Confidence 88999999999999999764 67899999999988743 33321 1457
Q ss_pred eEecCcccCCeEEEEEEEEcC
Q psy12426 88 GKVLDLIEGNQYEFRVLAVNK 108 (616)
Q Consensus 88 l~i~~l~~~~~~~y~c~a~n~ 108 (616)
|.|.+++..|+|.|+|.|.+.
T Consensus 50 L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 50 LLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EEEeCCCHHHCEEEEEEEEec
Confidence 999999999999999999954
No 125
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.07 E-value=2.3e-09 Score=81.72 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=56.9
Q ss_pred CcceEEE---cCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCC-CCCcEEEEEEEEcCCCCc
Q psy12426 223 LSDIKVR---AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTD 298 (616)
Q Consensus 223 ~~~~~v~---~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~-~~~~g~y~c~a~n~~g~~ 298 (616)
+.++.+. .|+.+.|.|.+.|.|.|.+.|++++..+...........+ ..|.|.++. ..|.|.|+|.|.|..|..
T Consensus 8 p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 8 PDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLATNSIGSI 85 (94)
T ss_pred CCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence 3444443 4689999999999999999999999988644332222222 278898885 689999999999999976
Q ss_pred e
Q psy12426 299 K 299 (616)
Q Consensus 299 ~ 299 (616)
.
T Consensus 86 ~ 86 (94)
T cd05848 86 L 86 (94)
T ss_pred E
Confidence 3
No 126
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.07 E-value=4.3e-10 Score=82.50 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=53.2
Q ss_pred EEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeEE
Q psy12426 21 KFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYE 100 (616)
Q Consensus 21 ~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~ 100 (616)
-|.|.+.|+|.|.|+|+|||+.|.....+.-..... ..........|.|.++.+.|.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~L~I~~~~~~D~G~ 60 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYE---------------------VTTPTEYHGCLQFDNPTHVNNGN 60 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEee---------------------cccccccEEEEEECCCCcccCeE
Confidence 378999999999999999999987543321110000 00001224579999999999999
Q ss_pred EEEEEEcCCCCCCCC
Q psy12426 101 FRVLAVNKGGPGEPS 115 (616)
Q Consensus 101 y~c~a~n~~g~~~~~ 115 (616)
|+|.|.|..|.....
T Consensus 61 YtC~A~N~~G~~~~~ 75 (81)
T cd04971 61 YTLVASNEYGQDSKS 75 (81)
T ss_pred EEEEEEeCCCCeeeE
Confidence 999999999987654
No 127
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.07 E-value=1.3e-09 Score=79.00 Aligned_cols=70 Identities=26% Similarity=0.376 Sum_probs=56.2
Q ss_pred EEEEEEEeeecCceeEEEECCeeec--ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITII--SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|++++..+. ...++..... ..|.|.+++..|.|.|+|.|.|..|.. +..+.+.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~---g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRS---GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCC---cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 3689999999999999999998876 3345544333 379999999999999999999999974 55666554
No 128
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.07 E-value=2.9e-10 Score=81.61 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=51.7
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY 99 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~ 99 (616)
|.|.|.+.|.|.|.|.|+|+++.+... ...- ......|.|.++.+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~-~~~~------------------------------~~~~~~L~I~~v~~~D~G 49 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN-RTKK------------------------------LNNNKTLQLDNVLESDDG 49 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC-ceeE------------------------------EcCCCEEEEcccCHHhCE
Confidence 579999999999999999999876521 1110 112568999999999999
Q ss_pred EEEEEEEcCCCCCCCC
Q psy12426 100 EFRVLAVNKGGPGEPS 115 (616)
Q Consensus 100 ~y~c~a~n~~g~~~~~ 115 (616)
.|.|.|.|..|.....
T Consensus 50 ~Y~C~a~N~~G~~~~~ 65 (71)
T cd05876 50 EYVCTAENSEGSARHH 65 (71)
T ss_pred EEEEEEEcCCCeEEEE
Confidence 9999999999976543
No 129
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.06 E-value=3.1e-09 Score=82.03 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=65.9
Q ss_pred CcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeeccc--CcEEEEec----CCceEEEecCCCCCC-cEEEEEEEEcC
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISK--DRFKIVND----DKSTKLKVFDSKRGD-SGIYTLAVKNS 294 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~l~~~~-~g~y~c~a~n~ 294 (616)
+....+..|+.+.|.|.+.|.|.| .+.|++++..+... .++.+... +..+.|.|.++...| .|.|.|.|.|.
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 355678999999999999999999 69999999877543 46665543 233589999999954 89999999999
Q ss_pred CCCceeeEEE
Q psy12426 295 WGTDKGTAKV 304 (616)
Q Consensus 295 ~g~~~~~~~l 304 (616)
.|.....+.|
T Consensus 88 ~G~~~~~~~L 97 (98)
T cd05758 88 FGSGTAIISL 97 (98)
T ss_pred CCcccEEEEe
Confidence 9987766554
No 130
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.06 E-value=4.1e-10 Score=80.56 Aligned_cols=64 Identities=28% Similarity=0.403 Sum_probs=51.8
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY 99 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~ 99 (616)
|+|.|.+.|.|.|.|.|+|+++.+. .+.|.-. ....|.|.++.+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~~~-------------------------------~~~~L~I~~v~~~D~G 48 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELP-KGRAEIL-------------------------------DDKSLKIRNVTAGDEG 48 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCC-CCcEEEe-------------------------------eCCEEEECcCChhHCE
Confidence 5799999999999999999987665 3333222 2457999999999999
Q ss_pred EEEEEEEcCCCCCCCC
Q psy12426 100 EFRVLAVNKGGPGEPS 115 (616)
Q Consensus 100 ~y~c~a~n~~g~~~~~ 115 (616)
.|.|.|.|..|.....
T Consensus 49 ~Y~C~a~N~~G~~~~~ 64 (69)
T cd05725 49 SYTCEAENMVGKIEAS 64 (69)
T ss_pred EEEEEEEcCCCcEEEE
Confidence 9999999999976443
No 131
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.06 E-value=1.5e-09 Score=79.25 Aligned_cols=71 Identities=18% Similarity=0.434 Sum_probs=55.4
Q ss_pred EEEEEEEeeecCceeEEEECCeeecccC-cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee--eEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG--TAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~--~~~l~v 306 (616)
++|.|.+.|.|.|.+.|+|++..+.... ++.+.. ....|.|.++++.|.|.|+|.|.|..|.... .+.|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 4689999999999999999999876543 333332 2348999999999999999999999997643 444443
No 132
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.06 E-value=5.5e-10 Score=83.48 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=58.0
Q ss_pred ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEe
Q psy12426 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV 90 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i 90 (616)
.+.+..|+++.|.|.+.|.|.|.+.|+|++..+.....+. . ......|.|
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~-~-----------------------------~~~~~~L~i 52 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE-S-----------------------------RKKKWTLSL 52 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce-e-----------------------------cCceEEEEE
Confidence 3557789999999999999999999999998776322210 0 112357999
Q ss_pred cCcccCCeEEEEEEEEcCCCCCC
Q psy12426 91 LDLIEGNQYEFRVLAVNKGGPGE 113 (616)
Q Consensus 91 ~~l~~~~~~~y~c~a~n~~g~~~ 113 (616)
.++.+.|.|.|.|.|.|..|...
T Consensus 53 ~~v~~~D~G~Y~C~a~N~~G~~~ 75 (82)
T cd05856 53 KNLKPEDSGKYTCHVSNRAGEIN 75 (82)
T ss_pred ccCChhhCEEEEEEEEcCCccEE
Confidence 99999999999999999998654
No 133
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.06 E-value=8.4e-10 Score=83.52 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=53.9
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCC----eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGG----NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD 92 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~----~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~ 92 (616)
|+.++|.|.+.|.|.|.|+|+|++ ..+...|.-.. .+.... ...........|.|.+
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~-----------~~~~~~--------~~~~~~~~~~~L~I~~ 61 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYV-----------TVLKVA--------GINTTDNESEVLYLRN 61 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceE-----------EEEEec--------CCcccccccceEEEec
Confidence 789999999999999999999964 23221121000 011000 0000012245789999
Q ss_pred cccCCeEEEEEEEEcCCCCCCCC
Q psy12426 93 LIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 93 l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
+.+.|+|.|.|.|.|..|....+
T Consensus 62 v~~~D~G~Y~C~A~N~~G~~~~s 84 (90)
T cd04974 62 VSFDDAGEYTCLAGNSIGPSHHS 84 (90)
T ss_pred cccccCcEEEEEeecccCcccCC
Confidence 99999999999999999987766
No 134
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.05 E-value=3.4e-10 Score=80.26 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=47.7
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ 98 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~ 98 (616)
+.|.|.+.|.|.|.+.|+|+|.++... ..|. ....+|.|.++...|+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--------------------------------~~~~~L~I~~v~~~D~ 48 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--------------------------------VDGYSLVIKDVTEEDA 48 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEE--------------------------------eCCCEEEECcCCHHHC
Confidence 479999999999999999999988643 3331 1135799999999999
Q ss_pred EEEEEEEEcCC
Q psy12426 99 YEFRVLAVNKG 109 (616)
Q Consensus 99 ~~y~c~a~n~~ 109 (616)
|.|.|.|.|..
T Consensus 49 G~YtC~a~~~~ 59 (72)
T cd07702 49 GIYTILLGIKQ 59 (72)
T ss_pred EEEEEEEEccc
Confidence 99999999863
No 135
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.05 E-value=2.5e-09 Score=81.06 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=56.2
Q ss_pred CcceEEEc---CCeEEEEEEEeeecCceeEEEECCeeecc-cCcEEEEecCCceEEEecCCC-CCCcEEEEEEEEcCCCC
Q psy12426 223 LSDIKVRA---GSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 223 ~~~~~v~~---g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~-~~~~g~y~c~a~n~~g~ 297 (616)
+.+..+.+ +..+.|.|.+.|.|.|.++|++++..+.. ..++.+. . ..|.|.++. ..|.|.|+|.|.|..|.
T Consensus 8 P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~-~---g~L~I~~~~~~~D~G~Y~C~A~N~~G~ 83 (93)
T cd05849 8 PIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV-G---GNLVINNPDKYKDAGRYVCIVSNIYGK 83 (93)
T ss_pred CCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE-C---CEEEECcCCcCCCCEEEEEEEEeCcce
Confidence 34444444 34799999999999999999999988753 3444332 2 389999985 58999999999999997
Q ss_pred ce
Q psy12426 298 DK 299 (616)
Q Consensus 298 ~~ 299 (616)
..
T Consensus 84 ~~ 85 (93)
T cd05849 84 VR 85 (93)
T ss_pred EE
Confidence 63
No 136
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.05 E-value=1.3e-09 Score=77.98 Aligned_cols=69 Identities=36% Similarity=0.563 Sum_probs=56.6
Q ss_pred EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|++++..+. ..++.+... ..|.|.+++..|.|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELP-KGRAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCC-CCcEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 4689999999999999999987664 344444433 38999999999999999999999999887777653
No 137
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.04 E-value=5.2e-10 Score=83.30 Aligned_cols=71 Identities=10% Similarity=0.184 Sum_probs=54.6
Q ss_pred CeEEEEEEEeeecCC--eeeeeeCCeeeee---ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426 18 TTLKFDANIIGEPVP--HVDWRAGGNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD 92 (616)
Q Consensus 18 ~~v~l~C~~~g~P~p--~v~W~~~~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~ 92 (616)
+.+.|.|.+.|+|.| .|+|+|||..+.. .+.|.-.. + .....+|.|.+
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~-------------~--------------~~~~~~L~I~~ 53 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME-------------V--------------KETIGDLVIVN 53 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE-------------e--------------cceEeEEEEcc
Confidence 578999999999998 5899999998864 22331110 0 11246899999
Q ss_pred cccCCeEEEEEEEEcCCCCCCCC
Q psy12426 93 LIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 93 l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
++..|.|.|.|.|.|..|....+
T Consensus 54 v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 54 AQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CChhhCeEEEEEEecCCCCEEEE
Confidence 99999999999999999977655
No 138
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.04 E-value=1.1e-09 Score=79.94 Aligned_cols=71 Identities=23% Similarity=0.421 Sum_probs=56.1
Q ss_pred EEEEEEEeeecCceeEEEECCeeec---ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITII---SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~---~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|++++.... ...++.+... ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 3689999999999999999986422 1233443322 248999999999999999999999998888877765
No 139
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.04 E-value=4.7e-10 Score=84.14 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=63.4
Q ss_pred cCCCCCCceEecCCCeEEEEEEEee-ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccC
Q psy12426 4 IDRRHLGDIKLSAGTTLKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTE 82 (616)
Q Consensus 4 i~~~~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~ 82 (616)
++.+.|+...+.+|++++|.|.+.+ .|.|.|.|+|++..+... . .
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-~---------------------------------~ 48 (85)
T cd05754 3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR-A---------------------------------M 48 (85)
T ss_pred EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc-c---------------------------------c
Confidence 4567899999999999999999864 789999999999765410 0 1
Q ss_pred CCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 83 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 83 ~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
.....|.|.++.+.|+|.|.|.|.|..|....+
T Consensus 49 ~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 49 DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 124589999999999999999999999876554
No 140
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.04 E-value=4.5e-09 Score=80.12 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=56.9
Q ss_pred CcceEEEcC---CeEEEEEEEeeecCceeEEEECCeeeccc--CcEEEEecCCceEEEecCCC-CCCcEEEEEEEEcCCC
Q psy12426 223 LSDIKVRAG---SNFEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWG 296 (616)
Q Consensus 223 ~~~~~v~~g---~~~~l~c~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~-~~~~g~y~c~a~n~~g 296 (616)
+.++.+.+| +.+.|.|.+.|.|.+.++|++++..+... .++.+. . ..|.|.++. ..|.|.|+|.|.|..|
T Consensus 8 P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~---g~L~I~~~~~~~D~G~Y~C~A~N~~G 83 (94)
T cd05850 8 PSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-A---GNLVINNPQKARDAGSYQCLAINRCG 83 (94)
T ss_pred CCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-C---CeEEEccCCccCcCEEEEEEEEcCcC
Confidence 455555555 57999999999999999999999987633 344333 2 278888865 5899999999999999
Q ss_pred Cce
Q psy12426 297 TDK 299 (616)
Q Consensus 297 ~~~ 299 (616)
...
T Consensus 84 ~~~ 86 (94)
T cd05850 84 TVV 86 (94)
T ss_pred cEE
Confidence 764
No 141
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.04 E-value=2.1e-09 Score=78.15 Aligned_cols=73 Identities=19% Similarity=0.400 Sum_probs=58.4
Q ss_pred CCeEEEEEEEeeecCceeEEEE-CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+...... ..|.|.++...|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN---GTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecC---CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 5655554444444333 37999999999999999999999998877766653
No 142
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.03 E-value=2.5e-09 Score=80.69 Aligned_cols=74 Identities=24% Similarity=0.430 Sum_probs=61.4
Q ss_pred CcceEEEcCCeEEEEEEE-eeecCceeEEEECCeeecc-cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426 223 LSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~-~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~ 299 (616)
+.+..+..|+++.|.|.+ .+.|.+.+.|++++..+.. ..++.+.. ...|.|.+++..|.|.|+|.|.|..|...
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 456788899999999998 7899999999999988765 34444433 23899999999999999999999988753
No 143
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.03 E-value=2.2e-09 Score=81.36 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=58.1
Q ss_pred CCeEEEEEEEeeecCceeEEEEC----CeeecccCc--EEEEec-------CCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCN----DITIISKDR--FKIVND-------DKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~----~~~~~~~~~--~~~~~~-------~~~~~l~i~~l~~~~~g~y~c~a~n~~g~ 297 (616)
|+.+.|.|.+.+.|.|.+.|+++ +..+..+.. ..+... .....|.|.+++.+|.|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 333332221 111111 12358999999999999999999999999
Q ss_pred ceeeEEEEE
Q psy12426 298 DKGTAKVTV 306 (616)
Q Consensus 298 ~~~~~~l~v 306 (616)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888876
No 144
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.03 E-value=4.6e-09 Score=79.73 Aligned_cols=82 Identities=26% Similarity=0.504 Sum_probs=63.0
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEE-CCeeecccCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEcCCCC-ce
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DK 299 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~ 299 (616)
+....+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.+.. ......|+|.++..+|.|.|+|.|.|..|. ..
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~ 85 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESE 85 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcce
Confidence 35577899999999999999975 999997 566555544444433 345579999999999999999999998654 45
Q ss_pred eeEEEE
Q psy12426 300 GTAKVT 305 (616)
Q Consensus 300 ~~~~l~ 305 (616)
.++.|.
T Consensus 86 ~sv~l~ 91 (92)
T cd04977 86 ATVNLK 91 (92)
T ss_pred eEEEEE
Confidence 555553
No 145
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.01 E-value=1e-09 Score=79.95 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=47.8
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcc---
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLI--- 94 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~--- 94 (616)
+.|.|.+.|+|.|.|+|+|+|..+.. .+.|.- .....+|.|..+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~------------------------------~~~~~~L~i~~~~~~~ 50 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM------------------------------RRRSGTLVIDFSGGGR 50 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE------------------------------eCCCceEEEeccCCCC
Confidence 57999999999999999999987642 233321 1124577777653
Q ss_pred c-CCeEEEEEEEEcCCCCCCC
Q psy12426 95 E-GNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 95 ~-~~~~~y~c~a~n~~g~~~~ 114 (616)
+ .|+|.|+|.|.|..|....
T Consensus 51 ~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 51 PEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CCCCCEEEEEEEEeccceEEE
Confidence 2 4689999999999996543
No 146
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.01 E-value=2.3e-09 Score=80.09 Aligned_cols=78 Identities=28% Similarity=0.354 Sum_probs=62.4
Q ss_pred eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~ 305 (616)
+.+..|+.+.|.|.+.+.|.|.+.|++++..+....... .......|.|.+++++|+|.|+|.|.|..|.....+.+.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 446679999999999999999999999988765433222 122345899999999999999999999999877666554
No 147
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.01 E-value=2.1e-09 Score=77.61 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=56.4
Q ss_pred EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v 306 (616)
+.|.|.+.|.|.|.+.|++++..+... +.... .....|.|.++...|.|.|+|.|.|..|.....+.+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 368999999999999999998876433 22222 23348999999999999999999999998887777665
No 148
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.01 E-value=1.8e-09 Score=81.70 Aligned_cols=76 Identities=28% Similarity=0.379 Sum_probs=57.6
Q ss_pred CCeEEEEEEEeeecCceeEEEECC----eeeccc--CcEEEEe-------cCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCND----ITIISK--DRFKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~----~~~~~~--~~~~~~~-------~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~ 297 (616)
|+.+.|.|.+.|.|.|.++|+|++ ..+... ....... .+....|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999964 222211 1111111 122348999999999999999999999999
Q ss_pred ceeeEEEEE
Q psy12426 298 DKGTAKVTV 306 (616)
Q Consensus 298 ~~~~~~l~v 306 (616)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 988888876
No 149
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.01 E-value=1.1e-09 Score=83.07 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=53.8
Q ss_pred CCeEEEEEEEeeecCCeeeeeeC----CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAG----GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD 92 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~----~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~ 92 (616)
|+.+.|.|.+.|.|.|.|+|+|+ |..+...|...-. +... .+ ..........|.|.+
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~-----------~~~~--~~------~~~~~~~~~~L~I~~ 61 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVT-----------VLKT--AG------VNTTDKEMEVLYLRN 61 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEE-----------Eecc--CC------ceecCCceeEEEEcc
Confidence 78999999999999999999995 3333322321111 0000 00 000011125799999
Q ss_pred cccCCeEEEEEEEEcCCCCCCCC
Q psy12426 93 LIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 93 l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
++..|.|.|+|.|.|..|....+
T Consensus 62 v~~~D~G~Y~C~A~N~~G~~~~~ 84 (90)
T cd05858 62 VTFEDAGEYTCLAGNSIGISHHS 84 (90)
T ss_pred CCHHHCEEEEEEEEeCCCcccce
Confidence 99999999999999999977655
No 150
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.00 E-value=9.1e-10 Score=80.28 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=49.8
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeee---ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG 96 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~ 96 (616)
++|.|.+.|.|.|.|+|+|+|..... ..+|.-. .....|.|.++.+.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~------------------------------~~~~~L~I~~~~~~ 50 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM------------------------------PEDDVFFIVDVKIE 50 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe------------------------------cCCCEEEEeeCCcc
Confidence 57999999999999999999864221 1222111 12357899999999
Q ss_pred CeEEEEEEEEcCCCCCCCC
Q psy12426 97 NQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 97 ~~~~y~c~a~n~~g~~~~~ 115 (616)
|.|.|.|.|.|..|.....
T Consensus 51 D~G~Y~C~A~N~~G~~~~~ 69 (75)
T cd05763 51 DTGVYSCTAQNTAGSISAN 69 (75)
T ss_pred cCEEEEEEEEcCCCEEEee
Confidence 9999999999999975444
No 151
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.99 E-value=1.6e-09 Score=79.32 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=53.1
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY 99 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~ 99 (616)
+.|.|.+.|.|.|.|+|+|+++.+.....+.... ......|.|.++...|.|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~----------------------------~~~~~~l~I~~~~~~D~G 52 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTL----------------------------IANGSELHISNVRYEDTG 52 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEE----------------------------eCCCCEEEECcCCcccCE
Confidence 4799999999999999999999876322222211 112357999999999999
Q ss_pred EEEEEEEcCCCCCCCC
Q psy12426 100 EFRVLAVNKGGPGEPS 115 (616)
Q Consensus 100 ~y~c~a~n~~g~~~~~ 115 (616)
.|.|.|.|..|.....
T Consensus 53 ~Y~C~a~N~~G~~~~~ 68 (76)
T cd05736 53 AYTCIAKNEAGVDEDI 68 (76)
T ss_pred EEEEEEEcCCCCcceE
Confidence 9999999999987655
No 152
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.99 E-value=4.7e-09 Score=76.80 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=56.7
Q ss_pred CCcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426 222 QLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299 (616)
Q Consensus 222 ~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~ 299 (616)
.+.++.+..|+.+.|.|.+.|.|.| .+.|.+++..+... .....+.|.|.++. |.|.|.|.|.|..|...
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~------~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP------PAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC------CCCCCCEEEEcccc--CCeEEEEEEEeccCcEE
Confidence 3567889999999999999999999 79999999887531 11223478888874 78999999999999654
No 153
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.99 E-value=1.4e-09 Score=79.16 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=52.3
Q ss_pred CCeEEEEEEEeeecCCeeeeee-CCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRA-GGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE 95 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~-~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~ 95 (616)
|+.+.|.|.+.|.|.|.|.|++ ++..+.....+.- ....+|.|..+..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-------------------------------~~~~~L~i~~~~~ 49 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV-------------------------------YDNGTLDILITTV 49 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE-------------------------------ecCCEEEEEECCh
Confidence 7899999999999999999997 5554442222211 1245789999999
Q ss_pred CCeEEEEEEEEcCCCCCCC
Q psy12426 96 GNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 96 ~~~~~y~c~a~n~~g~~~~ 114 (616)
.|.|.|.|.|.|..|....
T Consensus 50 ~D~G~Y~C~a~N~~G~~~~ 68 (74)
T cd05764 50 KDTGSFTCIASNAAGEATA 68 (74)
T ss_pred hhCEEEEEEEECCCCeEEE
Confidence 9999999999999997543
No 154
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.96 E-value=6.4e-09 Score=79.85 Aligned_cols=80 Identities=24% Similarity=0.366 Sum_probs=60.6
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCc--EEEEecCCceEEEecCC-----CCCCcEEEEEEEEcC-
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDS-----KRGDSGIYTLAVKNS- 294 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~l-----~~~~~g~y~c~a~n~- 294 (616)
|.+..+..|+++.|.|.+.+.|.+.+.|+|++..+..... ..+...+ .+.|.++ .+.|.|.|+|.|.|.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~N~~ 82 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQNDS 82 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEECCc
Confidence 4567788999999999999999999999999998764432 3332232 5666665 578999999999999
Q ss_pred CCCc-eeeEEEE
Q psy12426 295 WGTD-KGTAKVT 305 (616)
Q Consensus 295 ~g~~-~~~~~l~ 305 (616)
.|.. +..+.+.
T Consensus 83 ~G~~~s~~~~l~ 94 (95)
T cd05722 83 LGSIVSRTARLT 94 (95)
T ss_pred cCcEEEeeeEEe
Confidence 8876 3344443
No 155
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.95 E-value=3.9e-09 Score=77.16 Aligned_cols=69 Identities=28% Similarity=0.399 Sum_probs=56.0
Q ss_pred EEEEEEEee-ecCceeEEEECCeeecccCcEE---EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426 234 FEFDINVIG-EPIPTKEWLCNDITIISKDRFK---IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302 (616)
Q Consensus 234 ~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 302 (616)
+.|.|.+.+ .|.+.+.|++++..+....+.. +........|.|.++...|.|.|+|.|.|..|....++
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 368999999 9999999999998886544322 33344457899999999999999999999999876554
No 156
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.95 E-value=2.7e-09 Score=78.65 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=48.8
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeee--------eccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEec
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLN--------LRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL 91 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~--------~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~ 91 (616)
|+|.|.+.|.|.|.|+|+|++.... ..|++.- ....+|.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~-------------------------------~~~~~L~I~ 49 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL-------------------------------LSNGSLLIK 49 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE-------------------------------ecCCeEEEC
Confidence 5899999999999999999754221 1122211 124689999
Q ss_pred CcccCCeEEEEEEEEcCCCCCCC
Q psy12426 92 DLIEGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 92 ~l~~~~~~~y~c~a~n~~g~~~~ 114 (616)
++...|.|.|.|.|.|..|....
T Consensus 50 ~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 50 HVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred cCCcccCEEEEEEEEeCCCCCCc
Confidence 99999999999999999997643
No 157
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.95 E-value=3.3e-09 Score=80.44 Aligned_cols=81 Identities=22% Similarity=0.201 Sum_probs=62.7
Q ss_pred cceEEEcCCeEEEEEEEee-----ecCceeEEEECCeeeccc--CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426 224 SDIKVRAGSNFEFDINVIG-----EPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 296 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~-----~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g 296 (616)
....+.+|+.+.|.|.+.+ .|.+.+.|++++..+... ....+... ...|.|.++..+|+|.|+|.+.|..|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCc
Confidence 3566789999999999999 688899999998754321 11222222 24899999999999999999999999
Q ss_pred CceeeEEEEE
Q psy12426 297 TDKGTAKVTV 306 (616)
Q Consensus 297 ~~~~~~~l~v 306 (616)
....++.|.|
T Consensus 85 ~~~~~~~L~v 94 (94)
T cd05756 85 CMKVSISLTV 94 (94)
T ss_pred cEEEEEEEEC
Confidence 8877776653
No 158
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.94 E-value=1.8e-09 Score=78.99 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=53.1
Q ss_pred EEEEEEEee-ecCCeeeeeeCCeeeeeccceEE-EeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCC
Q psy12426 20 LKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEK-CAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN 97 (616)
Q Consensus 20 v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C-~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~ 97 (616)
+.|.|.+.| .|.|.++|+|+|+.+.....+.- ...+ ......|.|.++.+.|
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~--------------------------~~~~~~L~I~~~~~~D 54 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRN--------------------------KKKNSELQINKAKLAD 54 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEe--------------------------cCceEEEEEccCCccc
Confidence 479999999 99999999999998874332210 0000 1124679999999999
Q ss_pred eEEEEEEEEcCCCCCCCC
Q psy12426 98 QYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 98 ~~~y~c~a~n~~g~~~~~ 115 (616)
.|.|.|.|.|..|....+
T Consensus 55 ~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 55 SGEYTCVVENILGNDTVT 72 (75)
T ss_pred CeEEEEEEEEcCCceeEE
Confidence 999999999999976543
No 159
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.93 E-value=6.3e-09 Score=78.82 Aligned_cols=72 Identities=7% Similarity=0.083 Sum_probs=55.7
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee--------ccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL--------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ 80 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~--------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~ 80 (616)
-+++++.+|++|.|.|.+.|.|.|.|.|+|+++.+.. .++|.-..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~--------------------------- 56 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK--------------------------- 56 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe---------------------------
Confidence 4688999999999999999999999999998875422 22221110
Q ss_pred cCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426 81 TEGDTPKGKVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n 107 (616)
.......|.|.++...|+|.|.|.+..
T Consensus 57 ~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 57 STPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred CCCceEEEEECCCCcccCEEEEEEEEe
Confidence 011246899999999999999999985
No 160
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.93 E-value=5.2e-09 Score=79.70 Aligned_cols=73 Identities=7% Similarity=0.051 Sum_probs=55.4
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeee--------eeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL--------NLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ 80 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l--------~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~ 80 (616)
++++.+.+|++|.|.|.+.|.|.|.|.|++.++.+ ...++|...-.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~-------------------------- 57 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA-------------------------- 57 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC--------------------------
Confidence 67899999999999999999999999999744321 11334432100
Q ss_pred cCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNK 108 (616)
Q Consensus 81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~ 108 (616)
.....+|.|.++++.|+|.|.|.+.+.
T Consensus 58 -~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 58 -SWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred -CCCcEEEEECcCCcccCEEEEEEeEee
Confidence 123468999999999999999999964
No 161
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.93 E-value=2.1e-09 Score=77.60 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=50.4
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY 99 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~ 99 (616)
|.|.|.+.|.|.|.|+|+|+++.+.. +... . ......|.|.++...|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~-~-----------------------------~~~~~~L~i~~v~~~D~G 49 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPA-DRTK-F-----------------------------ENFNKTLKIDNVSEEDDG 49 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCC-Ccee-E-----------------------------ecCCCEEEECCCCHHHCE
Confidence 57999999999999999999987652 2110 0 112457999999999999
Q ss_pred EEEEEEEcCCCCCCC
Q psy12426 100 EFRVLAVNKGGPGEP 114 (616)
Q Consensus 100 ~y~c~a~n~~g~~~~ 114 (616)
.|.|.|.|..|....
T Consensus 50 ~Y~C~a~N~~G~~~~ 64 (71)
T cd05731 50 EYRCTASNSLGSARH 64 (71)
T ss_pred EEEEEEEeCCceEEE
Confidence 999999999986543
No 162
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.92 E-value=2.1e-09 Score=81.45 Aligned_cols=79 Identities=8% Similarity=-0.017 Sum_probs=59.2
Q ss_pred CCceEecCCCeEEEEEEEee-----ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426 9 LGDIKLSAGTTLKFDANIIG-----EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG 83 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~ 83 (616)
.....+.+|+.+.|.|.+.| .|.|.|.|||++..+...... + .++ ..
T Consensus 6 ~~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~-----~------~r~-----------------~~ 57 (94)
T cd05756 6 DKKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEE-----R------SRM-----------------HQ 57 (94)
T ss_pred eeEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccc-----c------cee-----------------ee
Confidence 45678899999999999999 799999999999765421000 0 000 01
Q ss_pred CCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
....|.|.++.+.|+|.|.|.+.|..|....+
T Consensus 58 ~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~ 89 (94)
T cd05756 58 QKDLLWFLPAALEDSGLYTCVVRNSTYCMKVS 89 (94)
T ss_pred cCCeEEEccCCcccCeEEEEEEcCCCccEEEE
Confidence 23579999999999999999999988865443
No 163
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.92 E-value=2.7e-09 Score=79.58 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=63.6
Q ss_pred CCccCCCCCCceEecCCCeEEEEEE-EeeecCCeeeeeeCCeee-eeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDAN-IIGEPVPHVDWRAGGNPL-NLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC 78 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~l-~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~ 78 (616)
.|++..+.++.+.|.+|+.+.|.|. ..|.|.|.|.|++++... ...+++ .
T Consensus 2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri---------------~------------- 53 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERV---------------S------------- 53 (95)
T ss_pred CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccE---------------E-------------
Confidence 3778778889999999999999998 799999999999876542 212221 1
Q ss_pred cccCCCCCceEecCcccCCeE-EEEEEEEcCCCC
Q psy12426 79 AQTEGDTPKGKVLDLIEGNQY-EFRVLAVNKGGP 111 (616)
Q Consensus 79 ~~~~~~~~~l~i~~l~~~~~~-~y~c~a~n~~g~ 111 (616)
...++.|.|.++.+.|.| .|.|.|.|....
T Consensus 54 ---~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 54 ---MGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred ---ECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 223589999999999999 799999986543
No 164
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.91 E-value=6.4e-09 Score=77.34 Aligned_cols=73 Identities=23% Similarity=0.454 Sum_probs=55.7
Q ss_pred CCeEEEEEEEeeecCceeEEEECCe---e-ecccC----cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDI---T-IISKD----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~---~-~~~~~----~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 302 (616)
|+.+.|.|.+.|.|.|.+.|++++. . +.... ++.. .....|.|.+++..|.|.|.|.|.|..|.....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV---TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE---ccccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence 6789999999999999999999742 1 11111 1111 1234899999999999999999999999988877
Q ss_pred EEEE
Q psy12426 303 KVTV 306 (616)
Q Consensus 303 ~l~v 306 (616)
.|.|
T Consensus 78 ~l~v 81 (81)
T cd05765 78 PLSV 81 (81)
T ss_pred EEeC
Confidence 7754
No 165
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.91 E-value=1.1e-08 Score=72.48 Aligned_cols=62 Identities=24% Similarity=0.351 Sum_probs=49.7
Q ss_pred EEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426 235 EFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 300 (616)
Q Consensus 235 ~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~ 300 (616)
.|.|.+.|.|.|++.|++++..+... .++.. .+ .+|.|.+++.+|+|.|+|.|.|.......
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~--~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~ 64 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV--DG--YSLVIKDVTEEDAGIYTILLGIKQYNLFK 64 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEEe--CC--CEEEECcCCHHHCEEEEEEEEccccceEe
Confidence 68999999999999999999887654 33322 22 38999999999999999999997554433
No 166
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.91 E-value=4.1e-09 Score=79.76 Aligned_cols=72 Identities=11% Similarity=0.121 Sum_probs=56.8
Q ss_pred CCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccc--eEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426 8 HLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPI--WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT 85 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~--Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~ 85 (616)
+++.+.+.+|+++.|.|.+.+ |.|.+.|+|++..+...+. ..+.. ..
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~------------------------------~~ 50 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV------------------------------TE 50 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE------------------------------cC
Confidence 477889999999999999987 8889999999987764321 11111 13
Q ss_pred CceEecCcccCCeEEEEEEEEcCCC
Q psy12426 86 PKGKVLDLIEGNQYEFRVLAVNKGG 110 (616)
Q Consensus 86 ~~l~i~~l~~~~~~~y~c~a~n~~g 110 (616)
..|.|.++.+.|+|.|.|.|.+..+
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 51 DGLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred CCEEEccCCHHHCEEEEEEEecCcc
Confidence 4689999999999999999997655
No 167
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.91 E-value=4.1e-09 Score=78.97 Aligned_cols=71 Identities=8% Similarity=0.165 Sum_probs=53.7
Q ss_pred CeEEEEEEEeeecCC--eeeeeeCCeeeeec---cceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426 18 TTLKFDANIIGEPVP--HVDWRAGGNPLNLR---PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD 92 (616)
Q Consensus 18 ~~v~l~C~~~g~P~p--~v~W~~~~~~l~~~---G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~ 92 (616)
+.+.|.|.+.|+|.| .+.|+|+|..+..+ +.|.=.- .....+.|.|.+
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~---------------------------~~~~~~~L~I~~ 53 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG---------------------------GKDSNGDLMIRN 53 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe---------------------------cccccceEEEcc
Confidence 579999999999998 56899999988631 2221110 012356899999
Q ss_pred cccCCeEEEEEEEEcCCCCCCCC
Q psy12426 93 LIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 93 l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
++..|+|.|.|.|.|..|....+
T Consensus 54 v~~~D~G~Y~C~a~n~~g~~~~~ 76 (85)
T cd04970 54 AQLKHAGKYTCTAQTVVDSLSAS 76 (85)
T ss_pred CCHHhCeeeEEEEecCCCcEEEE
Confidence 99999999999999988865444
No 168
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.91 E-value=3.2e-09 Score=79.02 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=52.0
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCe---eeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGN---PLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD 92 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~---~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~ 92 (616)
|+.+.|.|.+.|.|.|.|+|+|++. .+.. .+.+. ..+. ......|.|.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~-----------~~~~----------------~~~~~~L~I~~ 53 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR-----------GNVV----------------VTNIGQLVIYN 53 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCccc-----------CCEE----------------EccccEEEEcc
Confidence 7899999999999999999999842 1110 00000 0000 11246899999
Q ss_pred cccCCeEEEEEEEEcCCCCCCCC
Q psy12426 93 LIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 93 l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
+.+.|.|.|.|.|.|..|.....
T Consensus 54 ~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 54 AQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcccCEEEEEEEecCCceEEEE
Confidence 99999999999999999976544
No 169
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.90 E-value=5.8e-09 Score=76.20 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=49.5
Q ss_pred EEEEEEEeeecCceeEEEECCeeeccc--CcEEEEecCCceEEEecCCCC----CCcEEEEEEEEcCCCCce
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKR----GDSGIYTLAVKNSWGTDK 299 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~----~~~g~y~c~a~n~~g~~~ 299 (616)
+.|.|.+.|.|.|.++|++++..+... .++.+. .....|.|.++.. .|.|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~--~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK--PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe--CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 468999999999999999999887543 233332 2334888888754 689999999999999753
No 170
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.87 E-value=1.4e-08 Score=73.86 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=48.3
Q ss_pred EEEEEEEeeecCceeEEEECCeeeccc--CcEEEEecCCceEEEecCCCCC----CcEEEEEEEEcCCCCcee
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKRG----DSGIYTLAVKNSWGTDKG 300 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~----~~g~y~c~a~n~~g~~~~ 300 (616)
+.|.|.+.|.|.|.++|++++..+... .++.+.. ...+|.|..+... |.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKP--NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeC--CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 468999999999999999999876432 2333332 2337778777643 789999999999997543
No 171
>KOG4802|consensus
Probab=98.87 E-value=9.6e-08 Score=87.40 Aligned_cols=178 Identities=19% Similarity=0.257 Sum_probs=118.3
Q ss_pred CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEE------E------EeCCCCCEEEccccc-cceEEeccccCC
Q psy12426 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE------K------MDMETGRWVPMGDVS-GTYTRAENLIEG 376 (616)
Q Consensus 310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~------~------~~~~~~~~~~~~~~~-~~~~~i~~L~~~ 376 (616)
+.+|.+.+........+..+.|..-. .+.-|.+. + +......|+.+.... ...+...++.||
T Consensus 145 ~l~Pr~k~~y~r~~~g~~av~w~~~~-----~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPg 219 (516)
T KOG4802|consen 145 QLPPRPKILYFRRSRGSHAVDWKIES-----SLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPG 219 (516)
T ss_pred CCCCcchhhhhhhccCceeeeeeecc-----ccceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcc
Confidence 34444433344455666888887421 11222211 1 123345677766533 347888899999
Q ss_pred CeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCC---eEEEEecCCCCCCCCcceeEEEEEeeCCC
Q psy12426 377 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD---HVDLEWTPPKKDGGSPISQYIIEKKPKYG 453 (616)
Q Consensus 377 ~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~---~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~ 453 (616)
..|+|++.|+|..|.-.+++++..........+|.+|.++.+..+..+ ...|-|.++.. ..++.+|.|.|.-.-.
T Consensus 220 Rwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~s--dlPv~~Yki~Ws~~v~ 297 (516)
T KOG4802|consen 220 RWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKS--DLPVEKYKITWSLYVN 297 (516)
T ss_pred eeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCC--CCcceeeEEEeehhhh
Confidence 999999999999998888888888887777778888999987766322 36777886543 4579999999965431
Q ss_pred ----CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCC
Q psy12426 454 ----PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEP 494 (616)
Q Consensus 454 ----~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~ 494 (616)
.-......--+...+.|++|.|+..|.+.|.|+...|.+..
T Consensus 298 s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 298 SAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred hhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 10111111112335559999999999999999999988753
No 172
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.85 E-value=7.5e-09 Score=76.00 Aligned_cols=71 Identities=4% Similarity=0.097 Sum_probs=54.6
Q ss_pred CeEEEEEEEeeec--CCeeeeeeCCeeeee--cc-ceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426 18 TTLKFDANIIGEP--VPHVDWRAGGNPLNL--RP-IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD 92 (616)
Q Consensus 18 ~~v~l~C~~~g~P--~p~v~W~~~~~~l~~--~G-~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~ 92 (616)
+.+.|.|.+.++| .+.|.|+|||++|.. .| .|.-... ......|.|.+
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~---------------------------~~~~~~L~I~n 53 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGG---------------------------QDSAGDLMIRS 53 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEecc---------------------------CCCCCcEEEec
Confidence 5789999998755 788999999999962 23 4432210 01246899999
Q ss_pred cccCCeEEEEEEEEcCCCCCCCC
Q psy12426 93 LIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 93 l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
++..|.|.|.|.|.|..+....+
T Consensus 54 v~~~dsG~YtC~a~n~~~~~~a~ 76 (85)
T cd05853 54 IQLKHAGKYVCMVQTSVDKLSAA 76 (85)
T ss_pred CCHHHCEEEEEEEEcccCceEEE
Confidence 99999999999999999877655
No 173
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.84 E-value=3.8e-08 Score=74.94 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=61.6
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCe--------eecccCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--------TIISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~--------~~~~~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
+.++.+.+|+++.|.|.+.+.|.+.+.|++.+. ....+.++.+.. .....+|.|.+++.+|+|.|.|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 467889999999999999999999999986322 222345665532 24557899999999999999999998
Q ss_pred CCCCceeeEEEE
Q psy12426 294 SWGTDKGTAKVT 305 (616)
Q Consensus 294 ~~g~~~~~~~l~ 305 (616)
..+ ....+.|+
T Consensus 84 ~~~-~~~~~~l~ 94 (95)
T cd07701 84 MPV-KTSKAYLT 94 (95)
T ss_pred ecC-ccEEEEEE
Confidence 433 35555554
No 174
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.84 E-value=5.8e-08 Score=73.35 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=68.5
Q ss_pred CCceeccCCcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecc--cCcEEEEec----CCceEEEecCCCCCC-cEE
Q psy12426 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIIS--KDRFKIVND----DKSTKLKVFDSKRGD-SGI 286 (616)
Q Consensus 215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~--~~~~~~~~~----~~~~~l~i~~l~~~~-~g~ 286 (616)
||.+ .......+..|+.+.|.|.+.+.|.| .+.|..++..+.. ..++.+... +..+.|.|.++...| .|.
T Consensus 2 pP~i--~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII--SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE--ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 3544 34566788899999999999888876 6788888776643 357777653 467899999998876 789
Q ss_pred EEEEEEcCCCCceeeEEE
Q psy12426 287 YTLAVKNSWGTDKGTAKV 304 (616)
Q Consensus 287 y~c~a~n~~g~~~~~~~l 304 (616)
|.|.|.|..|.......|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999988766554
No 175
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.84 E-value=2.6e-08 Score=72.48 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=48.5
Q ss_pred EEEEEEEeeecCceeEEEECCeeec--ccCcEEEEecCCceEEEecCCCC----CCcEEEEEEEEcCCCCce
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITII--SKDRFKIVNDDKSTKLKVFDSKR----GDSGIYTLAVKNSWGTDK 299 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~l~~----~~~g~y~c~a~n~~g~~~ 299 (616)
+.|.|.+.|.|.|.++|++++..+. .+.++.+.. ....|.|..+.. .|.|.|+|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 3689999999999999999998753 334454432 234888887642 368999999999999654
No 176
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.83 E-value=2.7e-08 Score=73.29 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=50.8
Q ss_pred EEEEEEEeeecCceeEEEECCeeec--------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEE
Q psy12426 234 FEFDINVIGEPIPTKEWLCNDITII--------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKV 304 (616)
Q Consensus 234 ~~l~c~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l 304 (616)
++|.|.+.|.|.|.+.|++++.... ...++.+... .+|.|.++...|.|.|.|.|.|..|.. .....|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 4689999999999999999643211 2234444333 489999999999999999999999876 444444
No 177
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.82 E-value=9.7e-09 Score=75.03 Aligned_cols=70 Identities=10% Similarity=0.179 Sum_probs=50.9
Q ss_pred EEEEEEEee-ecCCeeeeeeCCeeeeecc--ceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426 20 LKFDANIIG-EPVPHVDWRAGGNPLNLRP--IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG 96 (616)
Q Consensus 20 v~l~C~~~g-~P~p~v~W~~~~~~l~~~G--~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~ 96 (616)
+.|+|.+.+ .|.|.++|+|+|+.+...+ ...-...+ ......|.|.++...
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~--------------------------~~~~~~L~I~~~~~~ 54 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRK--------------------------KKKSSELQISKASLA 54 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEe--------------------------CCcEEEEEECcCCcc
Confidence 579999764 7889999999999886321 11111100 122457999999999
Q ss_pred CeEEEEEEEEcCCCCCCCC
Q psy12426 97 NQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 97 ~~~~y~c~a~n~~g~~~~~ 115 (616)
|+|.|.|.|.|..|....+
T Consensus 55 DsG~Y~C~a~N~~g~~~~~ 73 (76)
T cd05895 55 DNGEYKCMVSSKLGNDSVT 73 (76)
T ss_pred cCEEEEEEEEeCCCceeEE
Confidence 9999999999999976544
No 178
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.82 E-value=2e-08 Score=74.96 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=57.6
Q ss_pred CCeEEEEEEEeee--cCceeEEEECCeeecccCc----EE-EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426 231 GSNFEFDINVIGE--PIPTKEWLCNDITIISKDR----FK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 303 (616)
Q Consensus 231 g~~~~l~c~~~~~--p~~~~~W~~~~~~~~~~~~----~~-~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~ 303 (616)
|+.+.|.|.+.+. |.+.+.|.+++..+..... .. .........|.|.+++..|+|.|+|.|.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6789999999999 8889999987765432111 11 111123468999999999999999999999998887777
Q ss_pred EEE
Q psy12426 304 VTV 306 (616)
Q Consensus 304 l~v 306 (616)
+.+
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 654
No 179
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.82 E-value=4.2e-08 Score=74.52 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=51.5
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecc--cCcEEEEecCCceEEEecCCCC-CCcEEEEEEEEcCCCCce
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIIS--KDRFKIVNDDKSTKLKVFDSKR-GDSGIYTLAVKNSWGTDK 299 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~l~~-~~~g~y~c~a~n~~g~~~ 299 (616)
+..+.|.|.+.|.|.+.++|++++..+.. ..++.+. . ..|.|.++.. .|.|.|+|.|.|..|...
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~-~---~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-G---GNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE-C---CEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 35799999999999999999999988743 2333332 2 2788988874 899999999999998653
No 180
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.81 E-value=1.3e-08 Score=76.03 Aligned_cols=77 Identities=6% Similarity=0.045 Sum_probs=60.1
Q ss_pred CCCCCceEecCCCeEEEEEE-EeeecCCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccC
Q psy12426 6 RRHLGDIKLSAGTTLKFDAN-IIGEPVPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTE 82 (616)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~ 82 (616)
.++.+.+.|.+|+.+.|.|. -.|.|.|.|.|+|++.++.. ..+- +. .
T Consensus 7 ~~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~--------------~~----------------~ 56 (96)
T cd05727 7 LEERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR--------------FV----------------S 56 (96)
T ss_pred cCCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe--------------EE----------------e
Confidence 35566788999999999998 77999999999999875431 1110 00 2
Q ss_pred CCCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426 83 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPG 112 (616)
Q Consensus 83 ~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~ 112 (616)
..++.|.|.+++..|.|.|.|.|.|.....
T Consensus 57 ~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 57 QTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 236799999999999999999999987655
No 181
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.81 E-value=1e-07 Score=72.28 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=56.7
Q ss_pred cceEEEcCCeEEEEEEEeeecCceeEEEECCeee--------cccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
.+..+..|+++.|.|.+.+.|.+.+.|++++..+ ..+.++.+... ....+|.|.+++..|.|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 6788999999999999999999999999877532 12345544332 2357999999999999999999987
No 182
>KOG4258|consensus
Probab=98.81 E-value=6.8e-08 Score=96.89 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=92.1
Q ss_pred ceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC--------------CCCEEEccc---------cccceEEeccccC
Q psy12426 319 PSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME--------------TGRWVPMGD---------VSGTYTRAENLIE 375 (616)
Q Consensus 319 ~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~--------------~~~~~~~~~---------~~~~~~~i~~L~~ 375 (616)
.+..+.+++.|+|..-...+...+.+|.+.|.... ...|..... .....+.+.+|+|
T Consensus 496 ~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP 575 (1025)
T KOG4258|consen 496 STVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKP 575 (1025)
T ss_pred eEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCc
Confidence 44566788999998654444556888999887532 123332211 1122577889999
Q ss_pred CCeEEEEEEEEecCcCC-CCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeC
Q psy12426 376 GHDYNFRVKAVNKIGES-LPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK 451 (616)
Q Consensus 376 ~~~y~~~v~a~n~~g~~-~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~ 451 (616)
.+.|-|-|.+....-.. ..-..|...-++|....|++|..+-....+++.+.|+|.+|..+++ .+++|.+.|...
T Consensus 576 ~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG-~lt~Ylv~wer~ 651 (1025)
T KOG4258|consen 576 WTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNG-NLTHYLVVWERQ 651 (1025)
T ss_pred cceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCC-ceeEEEEEEEec
Confidence 99999999987432221 2224467777888888999998777766677899999999888777 599999988543
No 183
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.79 E-value=5e-08 Score=72.48 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=55.8
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecccC----cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC--CceeeEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG--TDKGTAKV 304 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g--~~~~~~~l 304 (616)
|+++.|.|.+.+.|.+.+.|.+.+....... +..+........|.|.+++.+|+|.|.|.|.|..+ ....++.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 6789999999999999999998775432111 11111112246899999999999999999999765 45666666
Q ss_pred EEe
Q psy12426 305 TVL 307 (616)
Q Consensus 305 ~v~ 307 (616)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 653
No 184
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.79 E-value=4e-08 Score=71.79 Aligned_cols=69 Identities=26% Similarity=0.396 Sum_probs=53.7
Q ss_pred EEEEEEEee-ecCceeEEEECCeeeccc----CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426 234 FEFDINVIG-EPIPTKEWLCNDITIISK----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302 (616)
Q Consensus 234 ~~l~c~~~~-~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 302 (616)
+.|.|.+.+ .|.+.+.|++++..+... .++.+........|.|.+++..|+|.|+|.|.|..|....++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 368999875 577899999999887532 233444444557899999999999999999999998776654
No 185
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.79 E-value=7e-08 Score=71.17 Aligned_cols=68 Identities=15% Similarity=0.294 Sum_probs=55.8
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 295 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~ 295 (616)
|.+..+..|+++.|.|.+.+ +.+.+.|++++..+..+ .++.+. .+ .|.|.+++..|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~-~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY-RD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE-CC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 46788999999999999854 67899999999998765 344443 23 79999999999999999998753
No 186
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.77 E-value=4.7e-08 Score=73.23 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=62.0
Q ss_pred cCCcceEEEcCCeEEEEEEEee-ecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426 221 DQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299 (616)
Q Consensus 221 ~~~~~~~v~~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~ 299 (616)
..+....+..|++++|.|.+.+ .|.+.+.|++++..+... . . .....|.|.+++.+|+|.|.|.|.|..|...
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~-~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A-M---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c-c---ccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 4456778899999999999975 688899999988654321 1 1 1224899999999999999999999999887
Q ss_pred eeEEE
Q psy12426 300 GTAKV 304 (616)
Q Consensus 300 ~~~~l 304 (616)
.++.|
T Consensus 80 ~~~~l 84 (85)
T cd05754 80 ATATL 84 (85)
T ss_pred EEEEE
Confidence 76654
No 187
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.77 E-value=7.3e-09 Score=77.38 Aligned_cols=73 Identities=11% Similarity=0.101 Sum_probs=53.4
Q ss_pred CCeEEEEEEEeee--cCCeeeeeeCCeeeee---ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEec
Q psy12426 17 GTTLKFDANIIGE--PVPHVDWRAGGNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL 91 (616)
Q Consensus 17 g~~v~l~C~~~g~--P~p~v~W~~~~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~ 91 (616)
|+++.|.|.+.|. |.|.|+|+++++.+.. ........ ........|.|.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~s~L~I~ 54 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLS--------------------------EATELSSTLTIP 54 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccc--------------------------cceEEEEEEEEC
Confidence 7899999999999 8899999998875531 00000000 001123579999
Q ss_pred CcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 92 DLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 92 ~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
+++..|+|.|.|.|.|..|....+
T Consensus 55 ~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 55 NATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCChhhCEEEEEEEccCCCceEEE
Confidence 999999999999999999876654
No 188
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.76 E-value=2.2e-08 Score=74.13 Aligned_cols=67 Identities=9% Similarity=0.058 Sum_probs=54.0
Q ss_pred ceEecCCCeEEEEEEEe-eecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceE
Q psy12426 11 DIKLSAGTTLKFDANII-GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGK 89 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~ 89 (616)
...|.+|+.|+|+|.+. +.|.+.+.|+|+|+.+.. ......|.
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------------------------------------~~~~~~l~ 51 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------------------------------------SHSNSNLS 51 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------------------------------------cCCCceEE
Confidence 44689999999999975 567788999999976641 01135789
Q ss_pred ecCcccCCeEEEEEEEEcCCCCCC
Q psy12426 90 VLDLIEGNQYEFRVLAVNKGGPGE 113 (616)
Q Consensus 90 i~~l~~~~~~~y~c~a~n~~g~~~ 113 (616)
|..+...|+|.|+|.|.+..|...
T Consensus 52 I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 52 IPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred ECccCHHHCEEEEEEEEeCCceec
Confidence 999999999999999999888543
No 189
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.73 E-value=1.5e-07 Score=70.70 Aligned_cols=80 Identities=30% Similarity=0.351 Sum_probs=63.2
Q ss_pred eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEE-EecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l 304 (616)
+.+..|+.+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++...|.|.|.|.+.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 4566899999999999999999999999987764433332 222334579999999999999999999998887666655
Q ss_pred E
Q psy12426 305 T 305 (616)
Q Consensus 305 ~ 305 (616)
.
T Consensus 84 ~ 84 (85)
T cd05729 84 D 84 (85)
T ss_pred e
Confidence 4
No 190
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.73 E-value=5.5e-08 Score=73.15 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=57.2
Q ss_pred ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEe
Q psy12426 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV 90 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i 90 (616)
-+.+.+|+.+.|.|.+.|.|.|.|.|+|++..+.....+.-. . .......|.|
T Consensus 3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~-------------~--------------~~~~~~~l~i 55 (85)
T cd05729 3 LHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGY-------------K--------------VRKKKWTLIL 55 (85)
T ss_pred eeEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEE-------------E--------------ccCcEEEEEE
Confidence 356788999999999999999999999999877532211100 0 0112346889
Q ss_pred cCcccCCeEEEEEEEEcCCCCCC
Q psy12426 91 LDLIEGNQYEFRVLAVNKGGPGE 113 (616)
Q Consensus 91 ~~l~~~~~~~y~c~a~n~~g~~~ 113 (616)
.++.+.|.|.|.|.|.|..|...
T Consensus 56 ~~~~~~d~g~Y~C~~~n~~g~~~ 78 (85)
T cd05729 56 ESVVPSDSGKYTCIVENKYGSIN 78 (85)
T ss_pred eECCcccCEEEEEEEEECCceEE
Confidence 99999999999999999888653
No 191
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.72 E-value=9.2e-07 Score=79.07 Aligned_cols=157 Identities=9% Similarity=-0.011 Sum_probs=99.7
Q ss_pred cceEEEcCCeEEEEEEEeeec-----------CceeEEEECCeee--cc-cCcE-----EE-EecCCceEEEecCCCCCC
Q psy12426 224 SDIKVRAGSNFEFDINVIGEP-----------IPTKEWLCNDITI--IS-KDRF-----KI-VNDDKSTKLKVFDSKRGD 283 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p-----------~~~~~W~~~~~~~--~~-~~~~-----~~-~~~~~~~~l~i~~l~~~~ 283 (616)
..+.+.+|+.+.|.|.+.+.+ .+.+.|++++... .. +.+. .. ........|.|.+++..|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 457788999999999987644 4589999987542 11 1110 00 001223589999999999
Q ss_pred cEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCC-CCceEEEEEEEEeCCC----CCEE
Q psy12426 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDG-GTDILHYVVEKMDMET----GRWV 358 (616)
Q Consensus 284 ~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~-~~~i~~y~v~~~~~~~----~~~~ 358 (616)
+|.|+|.|.|..|....+..|.|...+ .......+..+.|.|....... +.+.. .+.|...+. ....
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p--~I~WyKng~~l~~~~r~ 181 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDY--TLTWYKNGNIVLYTDRI 181 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCc--eEEEEECCEECCCCCCE
Confidence 999999999988877777777774321 1233445778999997532110 11111 233322111 1111
Q ss_pred EccccccceEEeccccCCCeEEEEEEEEecC
Q psy12426 359 PMGDVSGTYTRAENLIEGHDYNFRVKAVNKI 389 (616)
Q Consensus 359 ~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~ 389 (616)
.. ......+.|.++...+.+.|+|.|....
T Consensus 182 ~~-~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 182 QL-RNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EE-eCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 11 1223479999999999999999998753
No 192
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.70 E-value=7.5e-08 Score=69.97 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=50.4
Q ss_pred CcceEEEcCCeEEEEEEEeeecC-ceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
|....+.+|+++.|.|.+.+.|. ..+.|++++..+.. ....|.|.++ .+|+|.|+|.|.|.
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 45577889999999999999876 47999999987621 1238899999 99999999999874
No 193
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.69 E-value=9.7e-08 Score=72.21 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=59.8
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC----cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC-C
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-T 297 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g-~ 297 (616)
+..+.+..|+.+.|.|.+.+ |.+.+.|++++..+.... ++... . ..|.|.+++..|+|.|+|.|.+..+ .
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 77 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--E--DGLLIRSVSPADAGVYTCQSVEHGFKQ 77 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--C--CCEEEccCCHHHCEEEEEEEecCccce
Confidence 35577889999999999987 888999999988765432 33222 1 2589999999999999999987544 3
Q ss_pred ceeeEEEEEe
Q psy12426 298 DKGTAKVTVL 307 (616)
Q Consensus 298 ~~~~~~l~v~ 307 (616)
...+..+.|.
T Consensus 78 ~~~~~~l~V~ 87 (89)
T cd04979 78 TLATYSLNVL 87 (89)
T ss_pred eEeEEEEEEe
Confidence 4555555553
No 194
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.68 E-value=7.4e-08 Score=67.56 Aligned_cols=63 Identities=21% Similarity=0.444 Sum_probs=50.8
Q ss_pred CCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426 16 AGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE 95 (616)
Q Consensus 16 ~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~ 95 (616)
+|+.++|.|.+.+.|.+.+.|+|++..+. ... .. ......|.|.++..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~--~~-----------------------------~~~~~~L~i~~~~~ 48 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESN--RL-----------------------------SASGSTLTIKSVSL 48 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-CCC--EE-----------------------------ecCCcEEEEeeCCc
Confidence 58999999999999999999999988765 111 11 12246899999999
Q ss_pred CCeEEEEEEEEcCCC
Q psy12426 96 GNQYEFRVLAVNKGG 110 (616)
Q Consensus 96 ~~~~~y~c~a~n~~g 110 (616)
.|.|.|.|.+.|..|
T Consensus 49 ~d~G~Y~C~~~n~~g 63 (63)
T smart00408 49 EDSGEYTCVAENSAG 63 (63)
T ss_pred ccCEEEEEEEecCCC
Confidence 999999999998765
No 195
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.66 E-value=4.8e-07 Score=69.19 Aligned_cols=86 Identities=43% Similarity=0.781 Sum_probs=67.4
Q ss_pred CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK 488 (616)
Q Consensus 410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~ 488 (616)
|.+|.++.+.....+++.|.|..+.... ..+..|.|++..... .|............+.+.+|.|++.|.|+|+|.+.
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~ 79 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence 3456677887778899999999875443 347789999987653 56655443346789999999999999999999999
Q ss_pred CCCCCCCC
Q psy12426 489 GGPGEPSK 496 (616)
Q Consensus 489 ~G~g~~s~ 496 (616)
.|.|.++.
T Consensus 80 ~~~~~~s~ 87 (93)
T cd00063 80 GGESPPSE 87 (93)
T ss_pred CccCCCcc
Confidence 88887765
No 196
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.65 E-value=1.7e-07 Score=70.55 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=59.3
Q ss_pred eEEEcCCeEEEEEEEeee-----cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426 226 IKVRAGSNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 300 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~ 300 (616)
..+..|....|.|...+. |.+.+.|++++..+....+... ....|.|.++..+|+|.|+|.|.|..+....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 567789999999987643 4679999999998875543332 2349999999999999999999998887655
Q ss_pred eEEEE
Q psy12426 301 TAKVT 305 (616)
Q Consensus 301 ~~~l~ 305 (616)
.+...
T Consensus 81 ~~t~t 85 (92)
T cd05757 81 NVTRT 85 (92)
T ss_pred EEEEE
Confidence 54443
No 197
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.63 E-value=7.5e-08 Score=71.47 Aligned_cols=69 Identities=19% Similarity=0.415 Sum_probs=53.7
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ 80 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~ 80 (616)
+|.|... ...+.+|+.+.|+|.+.|+|.+.+.|++++..+..+
T Consensus 1 kP~l~~~---~~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~---------------------------------- 43 (80)
T PF13895_consen 1 KPVLSSS---PQSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS---------------------------------- 43 (80)
T ss_dssp --EEEEE---SSEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE----------------------------------
T ss_pred CcEEEcc---ceEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee----------------------------------
Confidence 4677733 366899999999999999999999999999877611
Q ss_pred cCCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGG 110 (616)
Q Consensus 81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g 110 (616)
...+.+..+...+.|.|.|.|.+..+
T Consensus 44 ----~~~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 44 ----QNGLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp ----SSEEEESSEEGGGTEEEEEEEEETTE
T ss_pred ----eeeeeeeeeccccCEEEEEEEEeCCC
Confidence 11256677889999999999998655
No 198
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.62 E-value=2e-07 Score=70.03 Aligned_cols=81 Identities=35% Similarity=0.560 Sum_probs=64.7
Q ss_pred CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC-EEEccc-cccceEEeccccCCCeEEEEEEEEecC
Q psy12426 312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR-WVPMGD-VSGTYTRAENLIEGHDYNFRVKAVNKI 389 (616)
Q Consensus 312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~-~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~n~~ 389 (616)
+|.+ +.+..+..+++.|+|..+. .....+..|.|+++...... +..... .....+.+.+|.+++.|.|+|+|.|..
T Consensus 2 ~P~~-l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 2 APEN-LSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSEE-EEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred cCcC-eEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 3444 7788889999999999876 55678999999999866655 444332 344589999999999999999999999
Q ss_pred cCCCC
Q psy12426 390 GESLP 394 (616)
Q Consensus 390 g~~~~ 394 (616)
|.|.+
T Consensus 80 g~g~~ 84 (85)
T PF00041_consen 80 GEGPP 84 (85)
T ss_dssp EEEEE
T ss_pred cCcCC
Confidence 97654
No 199
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.59 E-value=9.3e-08 Score=71.95 Aligned_cols=71 Identities=11% Similarity=0.018 Sum_probs=55.4
Q ss_pred ceEecCCCeEEEEEEEee-----ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426 11 DIKLSAGTTLKFDANIIG-----EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT 85 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~ 85 (616)
.+.+.+|+.+.|+|...+ +|.|.|.|+||+.++...... - ...
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~-------------------------------~~~ 51 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-F-------------------------------VKG 51 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-E-------------------------------ecC
Confidence 467899999999998543 367899999999988732211 0 024
Q ss_pred CceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426 86 PKGKVLDLIEGNQYEFRVLAVNKGGPGE 113 (616)
Q Consensus 86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~ 113 (616)
..|.|.++...|+|.|.|.|.|..|...
T Consensus 52 ~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 52 SKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred CEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 6899999999999999999998877543
No 200
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.58 E-value=1.5e-07 Score=70.33 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=61.4
Q ss_pred CceeccCCcceEEEcCCeEEEEEE-EeeecCceeEEEECCee-ecccCcEEEEecCCceEEEecCCCCCCcE-EEEEEEE
Q psy12426 216 PYINRDQLSDIKVRAGSNFEFDIN-VIGEPIPTKEWLCNDIT-IISKDRFKIVNDDKSTKLKVFDSKRGDSG-IYTLAVK 292 (616)
Q Consensus 216 P~~~~~~~~~~~v~~g~~~~l~c~-~~~~p~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~l~~~~~g-~y~c~a~ 292 (616)
|.|.......+.+.+|+.+.|.|. ..|.|.|.+.|..++.. +..+.|+.+...| .|.|.+++..|.| .|.|.|.
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~ 79 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAH 79 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEE
Confidence 444445567789999999999997 68999999999987654 3334555554444 9999999999999 8999999
Q ss_pred cCCC
Q psy12426 293 NSWG 296 (616)
Q Consensus 293 n~~g 296 (616)
|...
T Consensus 80 ~~~~ 83 (95)
T cd05845 80 FPGL 83 (95)
T ss_pred cccc
Confidence 8653
No 201
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.57 E-value=1.4e-07 Score=70.90 Aligned_cols=87 Identities=7% Similarity=-0.000 Sum_probs=55.5
Q ss_pred eEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee--ccceEE-EeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426 12 IKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL--RPIWEK-CAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG 88 (616)
Q Consensus 12 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~--~G~Y~C-~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l 88 (616)
+.+.+|++|+|.|.+.+.|.+.|.|+++++.... .+...- .+.+ -..++... . ........+|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~----~~~r~~~~---------~-~~~~~g~~~L 67 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSK----LNDRADSR---------R-NLWDQGSFPL 67 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccc----cCCCCcee---------c-ccCCCCeEEE
Confidence 5688999999999999999999999988754321 122100 0000 00000000 0 0001224579
Q ss_pred EecCcccCCeEEEEEEEEcCCCCC
Q psy12426 89 KVLDLIEGNQYEFRVLAVNKGGPG 112 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~n~~g~~ 112 (616)
+|.+|+..|+|.|.|.+.|..++-
T Consensus 68 ~I~~l~~sDsgtY~C~v~~~~~~~ 91 (94)
T cd07690 68 IIKNLKIEDSDTYICEVEDKKEEV 91 (94)
T ss_pred EECCCCHHHCEEEEEEECCccceE
Confidence 999999999999999999876643
No 202
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.57 E-value=4.1e-07 Score=69.75 Aligned_cols=74 Identities=5% Similarity=0.073 Sum_probs=53.7
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee--------ccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL--------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ 80 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~--------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~ 80 (616)
.+++.+.+|++|.|.|.+.+.|.|.+.|++.++.+.. .++|.-. .
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~---------------------------~ 56 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV---------------------------N 56 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE---------------------------c
Confidence 5678899999999999999999999999874432210 1222111 0
Q ss_pred cCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKG 109 (616)
Q Consensus 81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~ 109 (616)
......+|.|.+++..|+|.|.|.+.+..
T Consensus 57 ~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 57 FSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred CCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 01124579999999999999999999654
No 203
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.56 E-value=1.7e-07 Score=69.61 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=48.5
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG 96 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~ 96 (616)
|+.+.|+|.+.|.|.|.++|++.++.... ....- . ... .. .......|.|.+++.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~~~-~---------~~~-----------~~--~~~~~s~L~I~~~~~~ 56 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGK-GIPEV-E---------EVK-----------VP--ATTLRSTLTFPHATVE 56 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCC-CceEE-E---------EEe-----------cC--CcEEEEEEEECCCCcC
Confidence 88999999999999999999988764220 00000 0 000 00 0011357999999999
Q ss_pred CeEEEEEEEEcCCC
Q psy12426 97 NQYEFRVLAVNKGG 110 (616)
Q Consensus 97 ~~~~y~c~a~n~~g 110 (616)
|+|.|.|.|.|..+
T Consensus 57 DsG~Y~C~a~n~~~ 70 (84)
T cd05861 57 DSGTYECAAHESTQ 70 (84)
T ss_pred CCEEEEEEEEECcc
Confidence 99999999998765
No 204
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.54 E-value=1.1e-06 Score=67.40 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=59.1
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCeee--------cccCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
+.++.+.+|+++.|.|.+.+.+.+.+.|++.+..+ ....++.+.. .+....|.|.+++..|+|.|.|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 36678999999999999998888999998532211 1234555532 23456899999999999999999997
Q ss_pred CCCCceeeEEEE
Q psy12426 294 SWGTDKGTAKVT 305 (616)
Q Consensus 294 ~~g~~~~~~~l~ 305 (616)
... ......++
T Consensus 84 ~~~-~~~~~~~~ 94 (95)
T cd05717 84 MPV-QTAKATVT 94 (95)
T ss_pred CCC-ceEEEEEE
Confidence 643 34444443
No 205
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.54 E-value=2.8e-07 Score=69.37 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=47.9
Q ss_pred ceEecCCCeEEEEEEEeeecCCeeeeeeCCe--eee----eccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGN--PLN----LRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD 84 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~--~l~----~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~ 84 (616)
.+.+.+|+++.|.|.. +.|.|.|+|||.+. ... ..+.|. ..
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~--------------------------------~~ 51 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI--------------------------------HT 51 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE--------------------------------Ee
Confidence 4678999999999996 58999999998542 211 112221 12
Q ss_pred CCceEecCcccCCeEEEEEEEEc
Q psy12426 85 TPKGKVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 85 ~~~l~i~~l~~~~~~~y~c~a~n 107 (616)
...|.|.+++++|+|.|.|.|.|
T Consensus 52 ~~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 52 ERGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred cCeEEEeeCChhHCEEEEEEEEc
Confidence 35699999999999999999984
No 206
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.51 E-value=1.7e-07 Score=70.23 Aligned_cols=71 Identities=8% Similarity=-0.051 Sum_probs=53.8
Q ss_pred ceEecCCCeEEEEEE-Eee----ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426 11 DIKLSAGTTLKFDAN-IIG----EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT 85 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~-~~g----~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~ 85 (616)
.+.+.+|....|+|. ..+ ++.|.|+||||+++|...+..... ....
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-----------------------------~~~~ 54 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-----------------------------LKGS 54 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-----------------------------cCCC
Confidence 457889999999997 333 477899999999988743322111 1124
Q ss_pred CceEecCcccCCeEEEEEEEEcCCC
Q psy12426 86 PKGKVLDLIEGNQYEFRVLAVNKGG 110 (616)
Q Consensus 86 ~~l~i~~l~~~~~~~y~c~a~n~~g 110 (616)
..|.|.++.++|+|.|.|.|.+..|
T Consensus 55 ~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 55 TYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred CEEEEEEcChhhCEEEEEEEEEeeC
Confidence 5799999999999999999998765
No 207
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.51 E-value=1.1e-06 Score=66.09 Aligned_cols=79 Identities=15% Similarity=0.247 Sum_probs=57.0
Q ss_pred ceEEEcCCeEEEEEEEeeecCceeEEEECCe--e----ecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc-CCCC
Q psy12426 225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T----IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN-SWGT 297 (616)
Q Consensus 225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~--~----~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n-~~g~ 297 (616)
.+.+.+|+.+.|.|.. +.|.+.+.|++.+. . +....++.... ..|.|.++++.|+|.|+|.|.+ ..+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~----~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTE----RGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEec----CeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 4567899999999996 57889999998432 1 11223443322 3699999999999999999984 6665
Q ss_pred ceeeEEEEEec
Q psy12426 298 DKGTAKVTVLD 308 (616)
Q Consensus 298 ~~~~~~l~v~~ 308 (616)
......|+|..
T Consensus 80 ~~~~~~l~v~~ 90 (91)
T cd05871 80 TLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEec
Confidence 66666666643
No 208
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.50 E-value=3.4e-07 Score=65.86 Aligned_cols=70 Identities=7% Similarity=-0.007 Sum_probs=49.3
Q ss_pred eEEEEEE-EeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCC
Q psy12426 19 TLKFDAN-IIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN 97 (616)
Q Consensus 19 ~v~l~C~-~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~ 97 (616)
.++|+|. ..|+|++.|+||||+++|.. . .....+ ....+ ....|.|.-....|
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~--~-~~~~~~-----~~~~t------------------~~s~L~~~~~~~Dd 54 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKG--V-ISQQEN-----GKTVS------------------VSNTIRFPVDRKDD 54 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCC--C-cccccC-----CceEE------------------EEEEEEEEeeeccC
Confidence 3789999 66899999999999999862 1 000000 00000 12467888888899
Q ss_pred eEEEEEEEEcCCCCCCC
Q psy12426 98 QYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 98 ~~~y~c~a~n~~g~~~~ 114 (616)
.+.|.|.|.|..+....
T Consensus 55 g~~~~C~A~n~a~~~~~ 71 (80)
T cd05885 55 GAILSCEASHPALVSQK 71 (80)
T ss_pred CcEEEEEEEChhhCCCC
Confidence 99999999999886643
No 209
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.50 E-value=2.6e-06 Score=70.65 Aligned_cols=115 Identities=11% Similarity=0.092 Sum_probs=70.3
Q ss_pred eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cC-ceeEE
Q psy12426 173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PI-PTKEW 250 (616)
Q Consensus 173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~-~~~~W 250 (616)
+|.|.+++..|.|.|.|.+.+..|..... +.+.. ..+|.+... +.......|+.+.|.|.+.+. |. +.+.|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~-----~~l~v-~~~P~v~~~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W 74 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQI-----IQLSV-SEPPRVRLS-LEKLVSMIEEPQTLICHIAGYYPLDVQVEW 74 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeE-----EEEEE-ecCCceEEe-CCCceeecCCcEEEEEEECCCCCCCeEEEE
Confidence 68999999999999999998865553321 22222 255666433 233444478889999999985 54 48999
Q ss_pred EECCeeecc-----cCc----EEEEecCC---ceEEEecCCCCCCcEEEEEEEEcC
Q psy12426 251 LCNDITIIS-----KDR----FKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 251 ~~~~~~~~~-----~~~----~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
++++..... ... .....++. .+.|.+..-...+...|+|.+.+.
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 75 TREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred EECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 999754211 110 11111111 134555544434456899999764
No 210
>smart00409 IG Immunoglobulin.
Probab=98.49 E-value=3.2e-06 Score=63.49 Aligned_cols=83 Identities=27% Similarity=0.475 Sum_probs=66.6
Q ss_pred cceEEEcCCeEEEEEEEeeecCceeEEEEC-CeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 302 (616)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++...|.|.|.|.+.+..+......
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 346678999999999999988889999998 7777655666666555567999999999999999999998777665555
Q ss_pred EEEE
Q psy12426 303 KVTV 306 (616)
Q Consensus 303 ~l~v 306 (616)
.+.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5443
No 211
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.49 E-value=3.2e-06 Score=63.49 Aligned_cols=83 Identities=27% Similarity=0.475 Sum_probs=66.6
Q ss_pred cceEEEcCCeEEEEEEEeeecCceeEEEEC-CeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 302 (616)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++...|.|.|.|.+.+..+......
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 346678999999999999988889999998 7777655666666555567999999999999999999998777665555
Q ss_pred EEEE
Q psy12426 303 KVTV 306 (616)
Q Consensus 303 ~l~v 306 (616)
.+.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5443
No 212
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.46 E-value=7.9e-07 Score=66.88 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=53.6
Q ss_pred eEEEcCCeEEEEEEEeeecCceeEEEECCeee-cc-------------cCcEEEEe---cCCceEEEecCCCCCCcEEEE
Q psy12426 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-IS-------------KDRFKIVN---DDKSTKLKVFDSKRGDSGIYT 288 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~-~~-------------~~~~~~~~---~~~~~~l~i~~l~~~~~g~y~ 288 (616)
+.+..|++++|.|.+.+.+.+.+.|++++... .. ..++.... ..+..+|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 45678999999999999999999999766332 10 12222222 234568999999999999999
Q ss_pred EEEEcCCCC
Q psy12426 289 LAVKNSWGT 297 (616)
Q Consensus 289 c~a~n~~g~ 297 (616)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999886553
No 213
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.46 E-value=5.3e-07 Score=67.52 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=56.2
Q ss_pred CcceEEEcCCeEEEEEEE-eeecCceeEEEECCeee--cccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426 223 LSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITI--ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 298 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~-~~~p~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~ 298 (616)
.....+.+|+.+.|.|.. .+.|.+.+.|++++..+ ..+.+..+.. ....|.|.+++..|.|.|+|.|.|.....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 455778899999999955 57789999999998753 2233333332 23399999999999999999999965443
No 214
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.43 E-value=1.6e-06 Score=60.61 Aligned_cols=63 Identities=24% Similarity=0.441 Sum_probs=50.3
Q ss_pred cCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426 230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 296 (616)
Q Consensus 230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g 296 (616)
+|+.+.|.|.+.+.+.+.+.|++++..+. . .... ......|.|.++...|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~-~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-E-SNRL--SASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-C-CCEE--ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 47789999999888999999999988765 2 1111 22344899999999999999999998754
No 215
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.41 E-value=6.7e-07 Score=67.65 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=56.7
Q ss_pred CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT 81 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~ 81 (616)
|.|... | ...|.+|++|+|+|... .+...+.|+|+|...... ....
T Consensus 3 P~L~a~-p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-------------------------------~~~~ 48 (91)
T cd05751 3 PSLWAE-P-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-------------------------------KPPE 48 (91)
T ss_pred CEEEec-C-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-------------------------------ccCC
Confidence 455543 3 45789999999999875 777789999999754310 0000
Q ss_pred CCCCCceEecCcccCCeEEEEEEEEcC-CCCCCCC
Q psy12426 82 EGDTPKGKVLDLIEGNQYEFRVLAVNK-GGPGEPS 115 (616)
Q Consensus 82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~-~g~~~~~ 115 (616)
......+.|.++.+.|.|.|+|+..+. .+-+.++
T Consensus 49 ~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~S 83 (91)
T cd05751 49 PQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPS 83 (91)
T ss_pred CceeEEEEccCCChhHCEEEEEEEECCCCccCCCC
Confidence 223567899999999999999999986 3444444
No 216
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.40 E-value=7.4e-06 Score=61.59 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=57.4
Q ss_pred cceEEEcCCeEEEEEEEeeecCceeEEEECCeee--------cccCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
.++.+.+|+++.|.|.+.+.....+.|++.+..+ ..+.|+.... .+...+|+|.+++.+|.|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 5688999999999999999877778888766442 2456777655 456778999999999999999999763
No 217
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.39 E-value=1.6e-06 Score=64.10 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=51.5
Q ss_pred eEEEcCCeEEEEEEEee-ecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426 226 IKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~ 297 (616)
..+.+|+.++|.|.+.. .+...+.|++++..+.. ......|.|.++...|+|.|+|.+.+..|.
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEEEeCCce
Confidence 35889999999999854 55678999999876531 112348999999999999999999998774
No 218
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.37 E-value=2.2e-06 Score=63.91 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=55.5
Q ss_pred CCeEEEEEEEeeecC--ceeEEEECCeeeccc---C--cEEE-EecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426 231 GSNFEFDINVIGEPI--PTKEWLCNDITIISK---D--RFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302 (616)
Q Consensus 231 g~~~~l~c~~~~~p~--~~~~W~~~~~~~~~~---~--~~~~-~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 302 (616)
|+++.|.|.+.+.+. ..+.|...+..+... . +... ......+.|.|.+++..|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 678999999988664 478998877543111 1 1111 1112346899999999999999999999888887777
Q ss_pred EEEEe
Q psy12426 303 KVTVL 307 (616)
Q Consensus 303 ~l~v~ 307 (616)
.+.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77764
No 219
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.36 E-value=2.9e-06 Score=63.69 Aligned_cols=75 Identities=16% Similarity=0.348 Sum_probs=58.4
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeeeC-CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAG-GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK 87 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~ 87 (616)
|..+.+.+|+.+.|.|.+.+.+.+.+.|+++ +..+...+.+..... .....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~----------------------------~~~~~ 52 (86)
T smart00410 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRS----------------------------GSNST 52 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEc----------------------------CCeeE
Confidence 4567889999999999999888899999998 766653444443321 11467
Q ss_pred eEecCcccCCeEEEEEEEEcCCCC
Q psy12426 88 GKVLDLIEGNQYEFRVLAVNKGGP 111 (616)
Q Consensus 88 l~i~~l~~~~~~~y~c~a~n~~g~ 111 (616)
|.|.++...|.|.|.|.+.+..+.
T Consensus 53 l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 53 LTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred EEEEeeccccCeEEEEEEEcCCCe
Confidence 999999999999999999976654
No 220
>smart00409 IG Immunoglobulin.
Probab=98.36 E-value=2.9e-06 Score=63.69 Aligned_cols=75 Identities=16% Similarity=0.348 Sum_probs=58.4
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeeeC-CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAG-GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK 87 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~ 87 (616)
|..+.+.+|+.+.|.|.+.+.+.+.+.|+++ +..+...+.+..... .....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~----------------------------~~~~~ 52 (86)
T smart00409 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRS----------------------------GSNST 52 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEc----------------------------CCeeE
Confidence 4567889999999999999888899999998 766653444443321 11467
Q ss_pred eEecCcccCCeEEEEEEEEcCCCC
Q psy12426 88 GKVLDLIEGNQYEFRVLAVNKGGP 111 (616)
Q Consensus 88 l~i~~l~~~~~~~y~c~a~n~~g~ 111 (616)
|.|.++...|.|.|.|.+.+..+.
T Consensus 53 l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 53 LTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred EEEEeeccccCeEEEEEEEcCCCe
Confidence 999999999999999999976654
No 221
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.34 E-value=7.3e-06 Score=61.41 Aligned_cols=84 Identities=24% Similarity=0.344 Sum_probs=66.8
Q ss_pred cceEEEcCCeEEEEEEEeeecCce-eEEEECCeeecccCcEEEEecC-----CceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426 224 SDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKDRFKIVNDD-----KSTKLKVFDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~l~~~~~g~y~c~a~n~~g~ 297 (616)
..+.|..|+.+.|.|.+.+.|.|. +.|.+++..+............ -.+.|.+..+...+.|.|+|.|.|..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 457799999999999999999997 9999988765433221122211 2468999999999999999999999998
Q ss_pred ceeeEEEEEe
Q psy12426 298 DKGTAKVTVL 307 (616)
Q Consensus 298 ~~~~~~l~v~ 307 (616)
.+.++.|.+.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888888764
No 222
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.33 E-value=1.6e-06 Score=60.77 Aligned_cols=63 Identities=13% Similarity=0.335 Sum_probs=44.1
Q ss_pred CCeEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426 17 GTTLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE 95 (616)
Q Consensus 17 g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~ 95 (616)
|+.|+|.|.+ .+.|.+.+.|+|+++.+.......-.. + + ......|.|.++.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~-----------------------~--~~~~~~L~i~~v~~ 54 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRST-N-----------------------S--VSSTSRLTISNVTP 54 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEE-T-----------------------T--TEEEEEEEESSCTG
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeec-c-----------------------c--ceeeeEEEEccCCH
Confidence 8999999999 788888999999998665211110000 0 0 00001399999999
Q ss_pred CCeEEEEEEE
Q psy12426 96 GNQYEFRVLA 105 (616)
Q Consensus 96 ~~~~~y~c~a 105 (616)
.|+|.|.|.|
T Consensus 55 ~d~G~Y~C~v 64 (64)
T PF00047_consen 55 EDSGTYTCVV 64 (64)
T ss_dssp GGTEEEEEEE
T ss_pred HHCEEEEEEC
Confidence 9999999986
No 223
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.32 E-value=2.9e-06 Score=59.49 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=46.4
Q ss_pred CCeEEEEEEE-eeecCceeEEEECCeeecccCcEEEEecCCc--eEEEecCCCCCCcEEEEEEE
Q psy12426 231 GSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKS--TKLKVFDSKRGDSGIYTLAV 291 (616)
Q Consensus 231 g~~~~l~c~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~l~i~~l~~~~~g~y~c~a 291 (616)
|+.+.|.|.+ ...+...+.|.+++..+.............. ..|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 6777889999999887654443333332221 13999999999999999986
No 224
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.32 E-value=2.6e-06 Score=67.42 Aligned_cols=89 Identities=8% Similarity=0.059 Sum_probs=57.1
Q ss_pred CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecC-CC--CCceeEeeeccCCccceeeccccCC
Q psy12426 7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTE-GD--TPKGKVLDLIEGNHPIWEKCAQTEG 83 (616)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~-~~--~~~~~v~~~~~~~~p~w~~~~~~~~ 83 (616)
++|+.+.+.+|++|+|.|.+.+.+.+.+.|+|.... +.-.+.+... .+ ...+++.... ....
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~----~~~~~l~~~~~~~~~~~~~r~~~~~-----------~~~~ 67 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPG----QGPQFLIYISSNGEEKEKGRFSATL-----------DKSR 67 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCC----CCeEEEEEEecCCCcccCCcEEEEE-----------cccC
Confidence 468899999999999999999888889999986421 0001111110 00 0111211100 0022
Q ss_pred CCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426 84 DTPKGKVLDLIEGNQYEFRVLAVNKGG 110 (616)
Q Consensus 84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g 110 (616)
...+|.|.++++.|+|.|.|.+.+..+
T Consensus 68 ~~~~L~I~~~~~~DsG~Y~C~~~~~~~ 94 (109)
T cd04983 68 KSSSLHISAAQLSDSAVYFCALSESGG 94 (109)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 356899999999999999999986543
No 225
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.30 E-value=1.3e-06 Score=63.93 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=52.0
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG 88 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l 88 (616)
.+.+.|.+|+++.|.|...++.+ .|.|+++|..+...++|.-. ...+
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s~~A-~v~W~~ng~~l~~~~r~~~~--------------------------------~~GL 49 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRSNLA-SPVWLFNGTPLNAQFSYRVG--------------------------------TDGL 49 (85)
T ss_pred ceEEEEecCCCEEEECCCCCCCc-cEEEEECCcccCCCcceEEe--------------------------------CCCC
Confidence 45788999999999999887644 99999999988644333211 3347
Q ss_pred EecCcccCCeEEEEEEEE
Q psy12426 89 KVLDLIEGNQYEFRVLAV 106 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~ 106 (616)
.|..++++|+|.|+|.+.
T Consensus 50 lI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 50 LILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEECCHhhCEEEEEEEe
Confidence 789999999999999998
No 226
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.27 E-value=5.1e-06 Score=61.44 Aligned_cols=70 Identities=29% Similarity=0.409 Sum_probs=53.8
Q ss_pred eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC-ceeeEEE
Q psy12426 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAKV 304 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~l 304 (616)
..+..|+.+.|.|.+.+.|.+.+.|++++..+..... .+.+.++...+.|.|+|.+.+..+. .+.++.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 5688999999999999998999999999876652211 2667888999999999999996542 2334444
Q ss_pred E
Q psy12426 305 T 305 (616)
Q Consensus 305 ~ 305 (616)
+
T Consensus 79 ~ 79 (80)
T PF13895_consen 79 T 79 (80)
T ss_dssp E
T ss_pred e
Confidence 3
No 227
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.24 E-value=6.6e-06 Score=65.05 Aligned_cols=86 Identities=8% Similarity=0.061 Sum_probs=54.6
Q ss_pred CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCe--eeee-----ccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426 7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGN--PLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA 79 (616)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~--~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~ 79 (616)
+.|..+.+.+|++|+|.|.+.+ +.+.|.|||... .+.. .+.-.+.. +....+.. ..
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~----~~~~~r~~-----------~~- 65 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEE----GDPKDRFS-----------AS- 65 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEec----CccCCceE-----------EE-
Confidence 4588999999999999999988 778899999642 2221 00000000 00000111 00
Q ss_pred ccCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKG 109 (616)
Q Consensus 80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~ 109 (616)
.......+|.|.+++++|+|.|.|.+.+..
T Consensus 66 ~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 66 RPSLTRSSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred CcCCCccEEEECCCChhhCEEEEEEeeCCC
Confidence 001135689999999999999999998643
No 228
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.23 E-value=1.4e-05 Score=59.16 Aligned_cols=76 Identities=38% Similarity=0.685 Sum_probs=53.6
Q ss_pred CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC----CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426 412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKACIVPANITATSVPDLKEGEEYEFRVIAVN 487 (616)
Q Consensus 412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~----~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n 487 (616)
+|.++.+.....+++.|+|.+|..... .+|.+.|..... .|...... .....+.+.+|.|++.|.|+|+|.+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVT-PSSTSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEec-CCccEEEEeCcCCCCEEEEEEEEEc
Confidence 445577777777799999997644321 567777765432 24433222 2257899999999999999999999
Q ss_pred CCCC
Q psy12426 488 KGGP 491 (616)
Q Consensus 488 ~~G~ 491 (616)
..|.
T Consensus 79 ~~g~ 82 (83)
T smart00060 79 GAGE 82 (83)
T ss_pred ccCC
Confidence 8664
No 229
>KOG4258|consensus
Probab=98.22 E-value=1.5e-05 Score=80.61 Aligned_cols=138 Identities=16% Similarity=0.226 Sum_probs=89.1
Q ss_pred CCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCC--------------C-CceEeEeecC-------CccEEEcCC
Q psy12426 415 QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--------------G-PWEKACIVPA-------NITATSVPD 472 (616)
Q Consensus 415 ~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~--------------~-~~~~~~~~~~-------~~~~~~l~~ 472 (616)
++.....+.+++.|+|..-.........+|.++|++.- + .|........ ...-+.+.+
T Consensus 493 ~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~ 572 (1025)
T KOG4258|consen 493 QFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDG 572 (1025)
T ss_pred eeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhc
Confidence 34455568899999998643333445889999997541 1 4665533222 234688999
Q ss_pred CCCCCeEEEEEEEEcCCCCCCCC-CCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeee
Q psy12426 473 LKEGEEYEFRVIAVNKGGPGEPS-KASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLS 551 (616)
Q Consensus 473 L~p~t~Y~~~v~a~n~~G~g~~s-~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (616)
|+|.|.|.|-|++....-..+.- ..+...- ..
T Consensus 573 LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~Y-----------------------------------------------vq 605 (1025)
T KOG4258|consen 573 LKPWTQYAVFVKTLTVTEAHEAYEAKSKIGY-----------------------------------------------VQ 605 (1025)
T ss_pred CCccceeEEEEeeeehhhhccccccccceEE-----------------------------------------------EE
Confidence 99999999999998443222211 1111100 01
Q ss_pred eeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCC
Q psy12426 552 YIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTS 600 (616)
Q Consensus 552 ~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~ 600 (616)
|....|.+|-.+-....+++.|.|+|+||..+ ||.++.|.|.|+....
T Consensus 606 T~~~~PspPl~~ls~snsSsqi~l~W~pP~~p-NG~lt~Ylv~wer~~~ 653 (1025)
T KOG4258|consen 606 TLPDIPSPPLDVLSKSNSSSQILLKWKPPSQP-NGNLTHYLVVWERQAE 653 (1025)
T ss_pred ecCCCCCCcchhhhccCcchheeEEecCCCCC-CCceeEEEEEEEeccC
Confidence 22234555555546666777999999998876 8999999999985543
No 230
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.21 E-value=1.2e-06 Score=63.88 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=48.9
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeeec-CCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEP-VPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA 79 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~ 79 (616)
||.|... +.......+. ++|+|.+.+.| .+.++|+ +.......+.-
T Consensus 1 kP~I~~~-~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~------------------------------ 47 (75)
T PF13927_consen 1 KPQISVP-PPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNSR------------------------------ 47 (75)
T ss_dssp ESEEEEE-STSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEEE------------------------------
T ss_pred CCEEEEc-CCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeeee------------------------------
Confidence 5788755 4444444444 99999999888 8899999 11111100000
Q ss_pred ccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n 107 (616)
........|.|.++...|.|.|.|.|.|
T Consensus 48 ~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 48 GSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 0011245789999999999999999986
No 231
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.20 E-value=5e-06 Score=61.62 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=45.0
Q ss_pred eEEEEEEEee-ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCC
Q psy12426 19 TLKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN 97 (616)
Q Consensus 19 ~v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~ 97 (616)
.++|+|.+.| .|.|.|+|+|+|+.+. .+.+.=.... .+........|.+......+
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~-~~~~~~~~~~----------------------~~~~~~~~s~L~i~~~~~~~ 57 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLD-GATYSKELLK----------------------DGKRETTVSTLPITPSDHDT 57 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEcc-CceeeeeEec----------------------CCCeEEEEEEEEEeCceecC
Confidence 3789999876 7999999999999876 3333111000 00000012356666666667
Q ss_pred eEEEEEEEEcCCCCC
Q psy12426 98 QYEFRVLAVNKGGPG 112 (616)
Q Consensus 98 ~~~y~c~a~n~~g~~ 112 (616)
.+.|+|.|.|.....
T Consensus 58 ~~~y~C~a~n~~l~~ 72 (82)
T cd05759 58 GRTFTCRARNEALPT 72 (82)
T ss_pred CCEEEEEEcCccCCC
Confidence 889999999865543
No 232
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.17 E-value=1.6e-05 Score=59.81 Aligned_cols=80 Identities=3% Similarity=-0.043 Sum_probs=52.8
Q ss_pred CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG 88 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l 88 (616)
-+++++.+|++|.|+|.+.+.....+.|++-+..+-..+. + .-+...++. ... ......+|
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~------~-~~~~d~Rf~-----------~~~-~~~~~~tL 64 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRD------V-RPLKDSRFQ-----------LVN-FSSNELRV 64 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecC------c-cccCCcCEE-----------EEe-CCCCEEEE
Confidence 3578999999999999999988888999977743321000 0 000000111 000 02335579
Q ss_pred EecCcccCCeEEEEEEEEc
Q psy12426 89 KVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~n 107 (616)
+|.+++..|+|.|.|.+..
T Consensus 65 ~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 65 SLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred EECcCCcccCEEEEEEEEc
Confidence 9999999999999999983
No 233
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.16 E-value=1.2e-05 Score=60.27 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=59.0
Q ss_pred CCceEecCCCeEEEEEEEeeecCCe-eeeeeCCeeeeecc-ceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPH-VDWRAGGNPLNLRP-IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP 86 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~l~~~G-~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~ 86 (616)
-..+.|.+|+.+.|.|.+.+.|+|+ +.|.+++..+.... .|. .-.+. ....-..
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~-~~~~~-----------------------~~~rY~S 65 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYV-KSRNE-----------------------SNNRYVS 65 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCcccccee-EEecc-----------------------CceEEEE
Confidence 4567899999999999999999998 99999988764311 121 11110 0011135
Q ss_pred ceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426 87 KGKVLDLIEGNQYEFRVLAVNKGGPGE 113 (616)
Q Consensus 87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~ 113 (616)
.|.+..|...+.|.|.|.|.|+.+...
T Consensus 66 ~L~L~Rlk~~E~G~YTf~a~N~~~~~s 92 (101)
T cd05860 66 ELHLTRLKGTEGGTYTFLVSNSDASAS 92 (101)
T ss_pred EEEEeecChhhCcEEEEEEECCCCeEE
Confidence 788999999999999999998776543
No 234
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.15 E-value=1.6e-05 Score=59.84 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=55.7
Q ss_pred cceEEEcCCeEEEEEEEee-----------ecCceeEEEECCeeecccCc-----EEEEecCCceEEEecCCCCCCcEEE
Q psy12426 224 SDIKVRAGSNFEFDINVIG-----------EPIPTKEWLCNDITIISKDR-----FKIVNDDKSTKLKVFDSKRGDSGIY 287 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~-----------~p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~l~~~~~g~y 287 (616)
..+.+.+|+.+.|.|..+- .....+.|+|++..+..... .++... ...|.|..+..+|+|.|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~--~~~Lwf~Pa~~eDSG~Y 85 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE--EDSIWFRPAELQDSGLY 85 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe--CCEEEEEeCChhhCeEE
Confidence 3467889999999999732 22347999999755433221 122222 23899999999999999
Q ss_pred EEEEEcCCCCceeeEEEE
Q psy12426 288 TLAVKNSWGTDKGTAKVT 305 (616)
Q Consensus 288 ~c~a~n~~g~~~~~~~l~ 305 (616)
+|.+.|.......+..|+
T Consensus 86 ~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 86 TCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEEECCCCcceEEEEEEE
Confidence 999999766555555444
No 235
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.13 E-value=1.4e-05 Score=60.05 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=52.1
Q ss_pred eEEEcCCeEEEEEEE---e--eecCceeEEEECCeeecccC-cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426 226 IKVRAGSNFEFDINV---I--GEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 298 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~---~--~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~ 298 (616)
..+..|.+..|.|.- . ..+.+.+.|+|++..+.... ++.... +...|.|.++..+|+|.|+|.+.+..|..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~--~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK--GSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC--CCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 345677888999973 2 33567999999998876443 222211 23479999999999999999999987654
No 236
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.12 E-value=1.6e-05 Score=58.20 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=58.1
Q ss_pred cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 303 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~ 303 (616)
..+.+..|+.+.|.|...+. .+.+.|++++..+..+.++..... -|.|.++++.|+|.|.|.+. ..|.....+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~ 77 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSE-EEGFQQLVAS 77 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence 45788999999999998775 669999999998876666665544 47799999999999999987 3354443333
No 237
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.09 E-value=9.7e-06 Score=60.42 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=50.4
Q ss_pred CCeEEEEEEEeeecCC--eeeeeeCCeeeee---ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEec
Q psy12426 17 GTTLKFDANIIGEPVP--HVDWRAGGNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL 91 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p--~v~W~~~~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~ 91 (616)
|+++.|.|.+.|+|.+ .++|.+.++.+.. ...+.= ...........|.|.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~-------------------------~~~~~~~~~s~L~I~ 55 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRR-------------------------SLQEHTELSSTLTIE 55 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccc-------------------------cccccceeeeEEEEe
Confidence 7899999999987754 6799988764421 000000 000001124589999
Q ss_pred CcccCCeEEEEEEEEcCCCCCCCC
Q psy12426 92 DLIEGNQYEFRVLAVNKGGPGEPS 115 (616)
Q Consensus 92 ~l~~~~~~~y~c~a~n~~g~~~~~ 115 (616)
+++..|.|.|.|.|.|..|....+
T Consensus 56 ~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 56 NVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred cCCcccCEEEEEEEeecceEeccc
Confidence 999999999999999988866554
No 238
>KOG0613|consensus
Probab=98.07 E-value=0.00011 Score=78.61 Aligned_cols=260 Identities=17% Similarity=0.216 Sum_probs=132.7
Q ss_pred cceEEEcCCeEEEEEEEeeecCce-eEEEECCeeecccC--cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426 224 SDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 300 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p~~~-~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~ 300 (616)
..+....+..+.+.|..++...+. +.|++++.....+. ..........+.+.|..+.+.+.+.+.|.|.|..|....
T Consensus 342 ~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 342 LSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred ceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence 445666777899999999998885 99999877654433 233334455678899999999999999999999998766
Q ss_pred eEEEEEecCC-CCC-CC---Cccceeec--CCeEEEEEeCCCCCCCCceEEEEEEEEe--CCCCCEEEccc--cccceEE
Q psy12426 301 TAKVTVLDIP-SPP-EG---PLKPSNIT--KSSCNLEWRAPRDDGGTDILHYVVEKMD--METGRWVPMGD--VSGTYTR 369 (616)
Q Consensus 301 ~~~l~v~~~p-~~p-~~---~~~~~~~~--~~~~~l~W~~~~~~~~~~i~~y~v~~~~--~~~~~~~~~~~--~~~~~~~ 369 (616)
....++...+ ..+ .. ...+.... .+.+.+.+..+.... + ....-.+.. ........... .....+.
T Consensus 422 ~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~--~-~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk 498 (1205)
T KOG0613|consen 422 IAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSM--P-MTTVTTIKDGLPLSDRSVTLTRDVLTSLLLK 498 (1205)
T ss_pred cchhhcccccCCCCCccccccccccccccCCcccccccCCCCccc--c-ceeEeeccCCcccccccccccccchhhheee
Confidence 5555543322 111 11 01111111 134444443322110 0 100001100 00011111111 1223344
Q ss_pred eccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEe
Q psy12426 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 449 (616)
Q Consensus 370 i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~ 449 (616)
+.++..+..|.+...-.+..+. .. .. .........++..+....--.....|.|.+-..+.+-.-.+|.+...
T Consensus 499 ~~~~~~~A~~~~a~~~~~~k~~--~~---~~--~~l~~~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~ 571 (1205)
T KOG0613|consen 499 VASLSDGAQYTRALRTLQGKPV--PS---LD--RKLPAAKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR 571 (1205)
T ss_pred ccCCCccchhhhhhhccCCCCC--Cc---cc--ccccccccCCcccccccccCCCCcccccCCCcccccccchhhhhhhh
Confidence 4555556555443332222221 11 00 00111222233222222223445566666422222211222333322
Q ss_pred eCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCC
Q psy12426 450 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSK 496 (616)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~ 496 (616)
..+.|......++ +..++-++.|+..|.+.+-+.+..|.+.++.
T Consensus 572 -qlg~~~~~~~r~g--tt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~ 615 (1205)
T KOG0613|consen 572 -QLGVWRVPESRPG--TTETIGSILPGHEYHVTIKAKNELGESRPSS 615 (1205)
T ss_pred -hccCCcccccCCC--cccccccccccccceeehhhhhcccccCCCC
Confidence 1123443333333 7788888999999999999999999998875
No 239
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.03 E-value=0.0039 Score=57.26 Aligned_cols=217 Identities=14% Similarity=0.147 Sum_probs=113.8
Q ss_pred cCCceEEEecCCCCCCcEEEEEEEEcCC-CCceeeEEEEEec---CCCCCCC----CccceeecCC--eEEEEEeCCCCC
Q psy12426 268 DDKSTKLKVFDSKRGDSGIYTLAVKNSW-GTDKGTAKVTVLD---IPSPPEG----PLKPSNITKS--SCNLEWRAPRDD 337 (616)
Q Consensus 268 ~~~~~~l~i~~l~~~~~g~y~c~a~n~~-g~~~~~~~l~v~~---~p~~p~~----~~~~~~~~~~--~~~l~W~~~~~~ 337 (616)
.+....++|.+|.++..|.+.+++.|.. +.+.+........ ....+.. .+....+.+. .-.++...|...
T Consensus 11 vg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~ 90 (300)
T PF10179_consen 11 VGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRS 90 (300)
T ss_pred cCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCC
Confidence 3445688999999999999999999863 3333322222222 1111111 0111122221 233445544211
Q ss_pred CCCceEEEEEEEE---------eCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEE-ccC--
Q psy12426 338 GGTDILHYVVEKM---------DMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT-AKD-- 405 (616)
Q Consensus 338 ~~~~i~~y~v~~~---------~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~-~~~-- 405 (616)
....-..+.+.-+ ..+...........-..+.+.++.+|..|.+++.+.|...... ...+. +.+
T Consensus 91 ~~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e~~~----~~kV~aast~~ 166 (300)
T PF10179_consen 91 STHQSLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDEGPS----TFKVQAASTNP 166 (300)
T ss_pred CCCccEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCCCce----EEEEEEecCCc
Confidence 1111122222221 1111111111223345789999999999999998766433211 12222 222
Q ss_pred -CCCCCCCCCCCEEEE----ecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-----------------------CceE
Q psy12426 406 -PFGRPDRPGQPTVTD----WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-----------------------PWEK 457 (616)
Q Consensus 406 -~~~~p~~p~~~~~~~----~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-----------------------~~~~ 457 (616)
...-|.-|.+..+.. .+.++++|.|.+. .+.. ..|=|+.++..+ ++..
T Consensus 167 ~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s-~d~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~ 242 (300)
T PF10179_consen 167 SKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGS-PDRS---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVL 242 (300)
T ss_pred ccCCCCCCCCCCceeEEcCCcccceEEEEEecC-CCCC---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEE
Confidence 224567777777644 3569999999953 2222 346666543321 1222
Q ss_pred eE--ee-------cCCccEEEcCCCCCCCeEEEEEEEEcCCCCC
Q psy12426 458 AC--IV-------PANITATSVPDLKEGEEYEFRVIAVNKGGPG 492 (616)
Q Consensus 458 ~~--~~-------~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g 492 (616)
+. .. .......+|.+|+||+.|.|.|.+.-..|.+
T Consensus 243 Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~s 286 (300)
T PF10179_consen 243 CKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQS 286 (300)
T ss_pred EEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCCce
Confidence 21 11 1112355899999999999999997665554
No 240
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.01 E-value=2.3e-05 Score=61.40 Aligned_cols=84 Identities=6% Similarity=0.042 Sum_probs=52.3
Q ss_pred CCCCceEecCCCeEEEEEEEeeec-CCeeeeeeCC--eeeeeccceEEEeecCCCC-CceeEeeeccCCccceeeccccC
Q psy12426 7 RHLGDIKLSAGTTLKFDANIIGEP-VPHVDWRAGG--NPLNLRPIWEKCAQTEGDT-PKGKVLDLIEGNHPIWEKCAQTE 82 (616)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~-~~~~v~~~~~~~~p~w~~~~~~~ 82 (616)
+.|..+.+.+|++|+|.|.+.+.. ...+.|||.. +.... .+.-.+.... ...+.. . ...
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~----l~~~~~~~~~~~~~r~~-----------~--~~~ 67 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKL----LIYGASTLASGTPSRFS-----------G--SGS 67 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEE----EEECccccCCCCCCCEE-----------E--ecc
Confidence 458889999999999999988766 5679999853 22110 0000000000 000111 0 001
Q ss_pred CCCCceEecCcccCCeEEEEEEEEc
Q psy12426 83 GDTPKGKVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 83 ~~~~~l~i~~l~~~~~~~y~c~a~n 107 (616)
.....|+|.++++.|+|.|.|.+.+
T Consensus 68 ~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 68 GTDFTLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred CCEEEEEECCCChHHCEEEEEEEeC
Confidence 2345799999999999999999875
No 241
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.96 E-value=6.1e-05 Score=59.49 Aligned_cols=73 Identities=25% Similarity=0.296 Sum_probs=55.8
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCee------e--------cccCcEEEEec--CCceEEEecCCCCCCcEE
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT------I--------ISKDRFKIVND--DKSTKLKVFDSKRGDSGI 286 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~------~--------~~~~~~~~~~~--~~~~~l~i~~l~~~~~g~ 286 (616)
+..+.+.+|+++.|.|.+.+.+...+.|++.... + ....++.+... .....|.|.+++.+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~ 84 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV 84 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence 4567899999999999999888889999984321 0 11245544432 356799999999999999
Q ss_pred EEEEEEcCC
Q psy12426 287 YTLAVKNSW 295 (616)
Q Consensus 287 y~c~a~n~~ 295 (616)
|.|.+.+..
T Consensus 85 Y~C~~~~~~ 93 (109)
T cd04983 85 YFCALSESG 93 (109)
T ss_pred EEEEEecCC
Confidence 999998754
No 242
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.94 E-value=0.0001 Score=54.60 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=45.2
Q ss_pred EEEEEEEee-ecCceeEEEECCeeecccCcEE-EEecCC----ceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426 234 FEFDINVIG-EPIPTKEWLCNDITIISKDRFK-IVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGTD 298 (616)
Q Consensus 234 ~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~ 298 (616)
+.|.|.+.| .|.+.+.|++++..+....... ....+. .+.|.|......+.+.|+|.|.|..-..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 579999987 6888999999998875432111 111221 2467777777778889999999865443
No 243
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.92 E-value=3.8e-05 Score=61.41 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=53.1
Q ss_pred CCCCceEecCCCeEEEEEEEee--ecCCeeeeeeCC--eeeee------ccceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426 7 RHLGDIKLSAGTTLKFDANIIG--EPVPHVDWRAGG--NPLNL------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWE 76 (616)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~g--~P~p~v~W~~~~--~~l~~------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~ 76 (616)
+.|..+.+.+|++|+|.|.+.+ .+.+.+.|||.. ..+.. .+.-.+. + +...+++..
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~--~--~~~~~r~~~---------- 68 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKL--S--GGTKNKFEA---------- 68 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEe--C--cccCCCEEE----------
Confidence 4588899999999999999887 778899999963 21110 0000000 0 000011110
Q ss_pred eccccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426 77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n 107 (616)
..........|+|.+++++|+|.|.|.+..
T Consensus 69 -~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 69 -RKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred -EEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 000011345799999999999999999874
No 244
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.91 E-value=9.4e-05 Score=58.65 Aligned_cols=89 Identities=10% Similarity=0.140 Sum_probs=53.1
Q ss_pred CCCceEecCCCeEEEEEEEeeec----CCeeeeeeC---CeeeeeccceEEEeecCC-----CCCceeEeeeccCCccce
Q psy12426 8 HLGDIKLSAGTTLKFDANIIGEP----VPHVDWRAG---GNPLNLRPIWEKCAQTEG-----DTPKGKVLDLIEGNHPIW 75 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~g~P----~p~v~W~~~---~~~l~~~G~Y~C~a~n~~-----~~~~~~v~~~~~~~~p~w 75 (616)
-+..+.+.+|+.|.|.|.....+ ...|+|++. +.. .. -.| ...+.. +.-.+++...
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~-~~-~v~--~~~~~~~~~~~~~f~~R~~~~-------- 71 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGR-EE-SVF--YYHKRPYPPPDGRFKGRVVWD-------- 71 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCc-ee-EEE--EECCCccccCcccccCeEEEe--------
Confidence 37788999999999999965433 246999852 111 10 000 000100 0011122110
Q ss_pred eeccccCCCCCceEecCcccCCeEEEEEEEEcCCCC
Q psy12426 76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP 111 (616)
Q Consensus 76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~ 111 (616)
+.......+|.|.+++..|+|.|.|.+.|..+.
T Consensus 72 ---~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 72 ---GNIMRRDASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ---cCCcCCceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 011234568999999999999999999987664
No 245
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.90 E-value=9.4e-05 Score=58.31 Aligned_cols=92 Identities=9% Similarity=-0.008 Sum_probs=54.2
Q ss_pred CCceEecCCCeEEEEEEEeee----cCCeeeeeeCCeeeeeccceEEEeecC------CCCCceeEeeeccCCccceeec
Q psy12426 9 LGDIKLSAGTTLKFDANIIGE----PVPHVDWRAGGNPLNLRPIWEKCAQTE------GDTPKGKVLDLIEGNHPIWEKC 78 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~----P~p~v~W~~~~~~l~~~G~Y~C~a~n~------~~~~~~~v~~~~~~~~p~w~~~ 78 (616)
+..+.+..|+.++|.|..... +...|+|.+....-. .-.-.+.=.+. .+.-++++. |...
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~-~~~~v~~y~~g~~~~~~~~~f~~Rv~---------f~g~ 74 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSR-DAISIFHYGKGQPYIDDVGPFKERIE---------WVGN 74 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCC-ccEEEEEeCCCceecccccCccCceE---------EeCC
Confidence 567889999999999996553 345799954321000 00000000000 011112222 1111
Q ss_pred cccCCCCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426 79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG 112 (616)
Q Consensus 79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~ 112 (616)
....+.++.|.+|+..|.|.|.|...|..+..
T Consensus 75 --~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 75 --PSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred --CCcCeeEEEEccCCcccCEEEEEEEEcCCCcC
Confidence 13456799999999999999999999877643
No 246
>KOG0613|consensus
Probab=97.88 E-value=0.00023 Score=76.33 Aligned_cols=323 Identities=17% Similarity=0.149 Sum_probs=165.5
Q ss_pred ccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC
Q psy12426 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245 (616)
Q Consensus 166 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~ 245 (616)
........+.|.++.+++.|.+.|.|.|..|..................++.+...-........-+.+.+.|...+.+.
T Consensus 387 ~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~ 466 (1205)
T KOG0613|consen 387 VGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSM 466 (1205)
T ss_pred cccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccc
Confidence 33455667889999999999999999999998665544443333333334443222111112222366778888888875
Q ss_pred c--eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe-cCCCCCCCCccceee
Q psy12426 246 P--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-DIPSPPEGPLKPSNI 322 (616)
Q Consensus 246 ~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~~~~~~~~ 322 (616)
+ .++|++++.... ........+...+|.+.-..+.+.+.|........+....+...... .....+.. +....-
T Consensus 467 ~~~~~tt~~~~~~~s--~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~~s~a~~~-~~~~~~ 543 (1205)
T KOG0613|consen 467 PMTTVTTIKDGLPLS--DRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPAAKSSAPKP-IHTQEN 543 (1205)
T ss_pred cceeEeeccCCcccc--cccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccccccCCccc-cccccc
Confidence 5 444555443322 22222222333455566666667777755555444433222111111 11111111 111222
Q ss_pred cCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEE
Q psy12426 323 TKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 402 (616)
Q Consensus 323 ~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~ 402 (616)
-.....|.|.+...+.+..-..|.+.-. ....|............+.+..++..|.+++.+.+..|.+.++..+....
T Consensus 544 ~~g~p~l~~~~~~~E~~~vs~~~~~a~~--qlg~~~~~~~r~gtt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~~~~t~k 621 (1205)
T KOG0613|consen 544 QPGTPTLEWEPKPAEASKVSLHYASATR--QLGVWRVPESRPGTTETIGSILPGHEYHVTIKAKNELGESRPSSKSTTLK 621 (1205)
T ss_pred CCCCcccccCCCcccccccchhhhhhhh--hccCCcccccCCCcccccccccccccceeehhhhhcccccCCCCCCcccc
Confidence 2344556665432222211112222111 11223333232337788889999999999999999999887653222222
Q ss_pred ccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEE
Q psy12426 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYE 480 (616)
Q Consensus 403 ~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~ 480 (616)
...+...+..|..-.......++..+.|.........+...|....-.... .|.-.... .......+....+.+.|.
T Consensus 622 ~~D~~q~~~~~~~~~~~ks~~~~~k~s~l~~l~k~~~~a~~~~~~~~~vd~~~K~kv~~~~-~e~d~~i~~~~~t~si~~ 700 (1205)
T KOG0613|consen 622 WQDPSQLKRRPVSEPSYKSPDSSQKPSKLVGLSKMDLPANLESQVKPTVVSSPKKKVKKKK-QEKDLEILAKKGTTSIVE 700 (1205)
T ss_pred ccccccccccccCCccccccccccchhcccchhhccccccceeeeeccccCCccccccccc-cccchhhhccCCCCcccc
Confidence 111111112222222223356778888887666555566666665544433 22221111 112344556677777788
Q ss_pred EEEEEEcCCCCCCC
Q psy12426 481 FRVIAVNKGGPGEP 494 (616)
Q Consensus 481 ~~v~a~n~~G~g~~ 494 (616)
+...+.+..+....
T Consensus 701 p~k~~e~~~~~~~~ 714 (1205)
T KOG0613|consen 701 PEKPPESEAATPAE 714 (1205)
T ss_pred cccCCccccCCccc
Confidence 88888777766544
No 247
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.88 E-value=5.3e-05 Score=57.25 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=50.0
Q ss_pred eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
..|..|++++|.|... .+...+.|+++|...... .....+....|.|.++.+.|+|.|+|...+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4678999999999875 566789999998753321 1122344568999999999999999999885
No 248
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.87 E-value=9.9e-05 Score=58.29 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=53.1
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCe--e---ec-------------ccCcEEEEecC-CceEEEecCCCCCC
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T---II-------------SKDRFKIVNDD-KSTKLKVFDSKRGD 283 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~--~---~~-------------~~~~~~~~~~~-~~~~l~i~~l~~~~ 283 (616)
+..+.+.+|++++|.|.+.+ +...+.|+|... . +. ...++...... ....|.|.+++++|
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D 83 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED 83 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence 45678999999999999988 677899998532 1 10 02344443332 46789999999999
Q ss_pred cEEEEEEEEcC
Q psy12426 284 SGIYTLAVKNS 294 (616)
Q Consensus 284 ~g~y~c~a~n~ 294 (616)
+|.|.|.+.+.
T Consensus 84 sg~Y~Ca~~~~ 94 (110)
T cd05899 84 SAVYLCASSLG 94 (110)
T ss_pred CEEEEEEeeCC
Confidence 99999999874
No 249
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.87 E-value=0.00015 Score=56.69 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=54.8
Q ss_pred cCCeEEEEEEEeeec------------CceeEEEECCe--e--ec----------cc--CcEEEEe---cCCceEEEecC
Q psy12426 230 AGSNFEFDINVIGEP------------IPTKEWLCNDI--T--II----------SK--DRFKIVN---DDKSTKLKVFD 278 (616)
Q Consensus 230 ~g~~~~l~c~~~~~p------------~~~~~W~~~~~--~--~~----------~~--~~~~~~~---~~~~~~l~i~~ 278 (616)
.|++++|.|...... .+++.|++... . +. .. .|+.+.. .....+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378899999987543 46899998421 1 10 01 2444433 33567999999
Q ss_pred CCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426 279 SKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307 (616)
Q Consensus 279 l~~~~~g~y~c~a~n~~g~~~~~~~l~v~ 307 (616)
++..|+|.|+|.+.+..........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999876777766666654
No 250
>KOG4802|consensus
Probab=97.86 E-value=0.0001 Score=68.19 Aligned_cols=93 Identities=25% Similarity=0.381 Sum_probs=65.2
Q ss_pred CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEe
Q psy12426 454 PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLF 533 (616)
Q Consensus 454 ~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~ 533 (616)
.|..... ......+.+.++.||..|+|||.|+|..|.--++.++........+
T Consensus 198 hwQtv~~-t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~p-------------------------- 250 (516)
T KOG4802|consen 198 HWQTVEK-TMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNP-------------------------- 250 (516)
T ss_pred cceeeee-cCCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCC--------------------------
Confidence 5666533 2345588899999999999999999999876667666654443322
Q ss_pred eCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCC---cEEEEeeCCCCCCCCceeeeEEEEe
Q psy12426 534 KNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKD---HIKIKWQQPISNGGSAIKGYEVERR 596 (616)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~---~i~l~W~~p~~~~~~~i~~Y~i~~~ 596 (616)
.+|.+|.++++.++..+ +..|-|.|+.++ -+|..|.|.|.
T Consensus 251 ---------------------kaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sd--lPv~~Yki~Ws 293 (516)
T KOG4802|consen 251 ---------------------KAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSD--LPVEKYKITWS 293 (516)
T ss_pred ---------------------CCCcCcccceeeeeeecceEEEEEEeCCCCCC--CcceeeEEEee
Confidence 33556777775544333 257788886654 89999999996
No 251
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.84 E-value=4.6e-05 Score=58.44 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=26.6
Q ss_pred cCCCeEEEEEEEeee-cC-CeeeeeeCCeeeee
Q psy12426 15 SAGTTLKFDANIIGE-PV-PHVDWRAGGNPLNL 45 (616)
Q Consensus 15 ~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~l~~ 45 (616)
..|+.++|.|.+.|. |. +.|+|+|||..+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~ 43 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTS 43 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCC
Confidence 579999999999997 64 67999999998863
No 252
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.80 E-value=4e-05 Score=55.67 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=41.0
Q ss_pred eEEEEEEEeeec-CceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 233 NFEFDINVIGEP-IPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 233 ~~~l~c~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
.+.|.|.+.+.+ .+.++|+ +..... .............|.|.++...|.|.|+|.|.|
T Consensus 17 ~~~l~C~~~~~~~~~~~~W~-~~~~~~--~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 17 SVTLTCSAEGGPPPPSISWY-DSNPSF--NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSEESSEEEEEE-TEEEEE--EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eEEEEEEEccccCCeEEEEE-ecCCce--eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 399999999998 8899999 111111 111111122334899999999999999999986
No 253
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.79 E-value=0.00012 Score=57.42 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=52.8
Q ss_pred CcceEEEcCCeEEEEEEEeeec-CceeEEEECCe--e---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEE
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDI--T---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIY 287 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~~~~--~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y 287 (616)
+..+.+.+|++++|.|.+.+.. ...+.|++... . +. ...++..........|.|.++++.|+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y 86 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY 86 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence 4567889999999999997665 56799987431 1 11 11345554445567899999999999999
Q ss_pred EEEEEcC
Q psy12426 288 TLAVKNS 294 (616)
Q Consensus 288 ~c~a~n~ 294 (616)
.|.+.+.
T Consensus 87 ~Ca~~~~ 93 (106)
T cd04980 87 YCQQYGT 93 (106)
T ss_pred EEEEeCC
Confidence 9999753
No 254
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.79 E-value=8.5e-05 Score=54.79 Aligned_cols=25 Identities=20% Similarity=0.575 Sum_probs=22.1
Q ss_pred EEEEEEEee-ecCCeeeeeeCCeeee
Q psy12426 20 LKFDANIIG-EPVPHVDWRAGGNPLN 44 (616)
Q Consensus 20 v~l~C~~~g-~P~p~v~W~~~~~~l~ 44 (616)
++|+|.+.| +|.+.|+|+|+|++|.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~ 27 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELK 27 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEcc
Confidence 789999765 6999999999999886
No 255
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.79 E-value=0.0001 Score=54.27 Aligned_cols=25 Identities=12% Similarity=0.523 Sum_probs=22.2
Q ss_pred EEEEEEEee-ecCCeeeeeeCCeeee
Q psy12426 20 LKFDANIIG-EPVPHVDWRAGGNPLN 44 (616)
Q Consensus 20 v~l~C~~~g-~P~p~v~W~~~~~~l~ 44 (616)
++|+|.+.| +|...|+|+|||+.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~ 27 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIK 27 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECc
Confidence 789999776 8888999999999876
No 256
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.78 E-value=0.00011 Score=57.52 Aligned_cols=70 Identities=24% Similarity=0.253 Sum_probs=52.0
Q ss_pred EEEcCCeEEEEEEEeee-cCceeEEEECCee-----e------------cccCcEEEEecC--CceEEEecCCCCCCcEE
Q psy12426 227 KVRAGSNFEFDINVIGE-PIPTKEWLCNDIT-----I------------ISKDRFKIVNDD--KSTKLKVFDSKRGDSGI 286 (616)
Q Consensus 227 ~v~~g~~~~l~c~~~~~-p~~~~~W~~~~~~-----~------------~~~~~~~~~~~~--~~~~l~i~~l~~~~~g~ 286 (616)
.+..|++++|.|.+... +...+.|++.... + ....++.+.... ...+|+|.+++.+|.|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999986 6778999984321 1 012344444333 56799999999999999
Q ss_pred EEEEEEcCCC
Q psy12426 287 YTLAVKNSWG 296 (616)
Q Consensus 287 y~c~a~n~~g 296 (616)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 257
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.78 E-value=8.3e-05 Score=58.31 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=51.2
Q ss_pred EecCCCeEEEEEEEeee-cCCeeeeeeCCeeeeeccceEEEeecCC----CCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426 13 KLSAGTTLKFDANIIGE-PVPHVDWRAGGNPLNLRPIWEKCAQTEG----DTPKGKVLDLIEGNHPIWEKCAQTEGDTPK 87 (616)
Q Consensus 13 ~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~l~~~G~Y~C~a~n~~----~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~ 87 (616)
.|.+|++|+|.|.+.+. +...+.|+|....-.. ...+...+.. ....+++... .. ......+
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~--~~i~~~~~~~~~~~~~~~~r~~~~---------~~--~~~~~~s 68 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGP--ELLIYISSNGSQYAGGVKGRFSGT---------RD--SSKSSFT 68 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCC--EEEEEEeCCCCccCccCCCcEEEE---------Ee--ccCCEEE
Confidence 57899999999998876 6778999996531000 0111111100 0011111110 00 0113568
Q ss_pred eEecCcccCCeEEEEEEEEcCCC
Q psy12426 88 GKVLDLIEGNQYEFRVLAVNKGG 110 (616)
Q Consensus 88 l~i~~l~~~~~~~y~c~a~n~~g 110 (616)
|+|.+++..|.|.|.|.+.+..+
T Consensus 69 L~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 69 LTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEECCCCHHHCEEEEEEEecCCC
Confidence 99999999999999999996554
No 258
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.77 E-value=0.0002 Score=57.09 Aligned_cols=93 Identities=9% Similarity=0.021 Sum_probs=53.3
Q ss_pred CCCceEecCCCeEEEEEEEeeec----CCeeeeeeCCee-eeeccceEEEeecCC----CCCceeEeeeccCCccceeec
Q psy12426 8 HLGDIKLSAGTTLKFDANIIGEP----VPHVDWRAGGNP-LNLRPIWEKCAQTEG----DTPKGKVLDLIEGNHPIWEKC 78 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~g~P----~p~v~W~~~~~~-l~~~G~Y~C~a~n~~----~~~~~~v~~~~~~~~p~w~~~ 78 (616)
.|..+.+.+|+.|+|.|...... ...|.|++.... -...-.|........ +.-++++.-.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~----------- 72 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWV----------- 72 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEe-----------
Confidence 47888999999999999875432 256999874320 000000111000000 0001111110
Q ss_pred cccCCCCCceEecCcccCCeEEEEEEEEcCCCC
Q psy12426 79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP 111 (616)
Q Consensus 79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~ 111 (616)
+.......+|+|.+++..|+|.|.|.+.|..+.
T Consensus 73 ~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 73 GNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred cCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence 111233468999999999999999999976554
No 259
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.77 E-value=7.9e-05 Score=56.14 Aligned_cols=76 Identities=5% Similarity=-0.086 Sum_probs=50.9
Q ss_pred CceEecCCCeEEEEEEE-e----------eecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426 10 GDIKLSAGTTLKFDANI-I----------GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC 78 (616)
Q Consensus 10 ~~~~v~~g~~v~l~C~~-~----------g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~ 78 (616)
+...+.+||.|.|.|.. . ..+...|.|||++..+...+.-. . .+.++
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~----~----~~~Ri-------------- 65 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEII----F----DGVRM-------------- 65 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCccc----c----cceeE--------------
Confidence 45789999999999984 1 12233799999986655322100 0 00011
Q ss_pred cccCCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426 79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG 110 (616)
Q Consensus 79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g 110 (616)
......|.|..+..+|+|.|.|.+.|...
T Consensus 66 ---~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~ 94 (104)
T cd05896 66 ---SKEEDSIWFRPAELQDSGLYTCVLRNSTY 94 (104)
T ss_pred ---EEeCCEEEEEeCChhhCeEEEEEECCCCc
Confidence 12256889999999999999999997653
No 260
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.77 E-value=5.2e-05 Score=58.21 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=35.3
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEee-ec-CCeeeeeeCCeeee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIG-EP-VPHVDWRAGGNPLN 44 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P-~p~v~W~~~~~~l~ 44 (616)
||.+..-+|......+++.++|.|.|.| .| ...|+|+|||+.+.
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 6777666677666778899999999988 56 45689999999875
No 261
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.76 E-value=0.00025 Score=51.14 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=46.4
Q ss_pred EEEEEEEe-eecCceeEEEECCeeecccCcEEEEec---CCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426 234 FEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVND---DKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 298 (616)
Q Consensus 234 ~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~ 298 (616)
+.|+|... +.|.+.++|++++..+..... ....+ ...+.|.|.-...+|.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 67999887 558889999999999854211 00000 012368888888889999999999987754
No 262
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.75 E-value=0.00038 Score=54.50 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=54.6
Q ss_pred cCCeEEEEEEEeeec------CceeEEEECC-----e-eec--ccCc--------EEEE---ecCCceEEEecCCCCCCc
Q psy12426 230 AGSNFEFDINVIGEP------IPTKEWLCND-----I-TII--SKDR--------FKIV---NDDKSTKLKVFDSKRGDS 284 (616)
Q Consensus 230 ~g~~~~l~c~~~~~p------~~~~~W~~~~-----~-~~~--~~~~--------~~~~---~~~~~~~l~i~~l~~~~~ 284 (616)
.|++++|.|.....+ ...+.|++.. . .+. .+.. ..+. ......+|+|.+++..|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378999999988653 4689999862 1 110 1111 1111 123567999999999999
Q ss_pred EEEEEEEEcCCCCceeeEEEEEec
Q psy12426 285 GIYTLAVKNSWGTDKGTAKVTVLD 308 (616)
Q Consensus 285 g~y~c~a~n~~g~~~~~~~l~v~~ 308 (616)
|.|.|.+.+..+.......|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999777667777776653
No 263
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.74 E-value=0.00012 Score=55.77 Aligned_cols=78 Identities=13% Similarity=0.197 Sum_probs=49.1
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecC---CCCCceeEeeeccCCccceeeccccCCCCCceEecCc
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTE---GDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDL 93 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~---~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l 93 (616)
|++|+|.|.....+...|.|+|+.......-.......+. ...-.+++. .....+|.|.++
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~----------------~~~~~sL~I~~l 64 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRET----------------IYPNGSLLIQNL 64 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEE----------------EcCCceEEEccC
Confidence 8899999998776677899999875432110000010000 000111111 222479999999
Q ss_pred ccCCeEEEEEEEEcCCC
Q psy12426 94 IEGNQYEFRVLAVNKGG 110 (616)
Q Consensus 94 ~~~~~~~y~c~a~n~~g 110 (616)
++.|+|.|.|......|
T Consensus 65 ~~~DsG~Y~c~v~~~~~ 81 (92)
T cd05741 65 TKEDSGTYTLQIISTNG 81 (92)
T ss_pred CchhcEEEEEEEEcCCC
Confidence 99999999999997654
No 264
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.73 E-value=0.00031 Score=55.08 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=54.7
Q ss_pred cCCeEEEEEEEeeec------CceeEEEECCee-------e-cc----------cCcEEEEec-CCceEEEecCCCCCCc
Q psy12426 230 AGSNFEFDINVIGEP------IPTKEWLCNDIT-------I-IS----------KDRFKIVND-DKSTKLKVFDSKRGDS 284 (616)
Q Consensus 230 ~g~~~~l~c~~~~~p------~~~~~W~~~~~~-------~-~~----------~~~~~~~~~-~~~~~l~i~~l~~~~~ 284 (616)
.|++++|.|.....| ...+.|++.... + .. ..|+.+... ....+|.|.+++..|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378999999987663 357999985310 1 00 123333211 2356899999999999
Q ss_pred EEEEEEEEcCCCCceeeEEEEEe
Q psy12426 285 GIYTLAVKNSWGTDKGTAKVTVL 307 (616)
Q Consensus 285 g~y~c~a~n~~g~~~~~~~l~v~ 307 (616)
|.|.|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988877777777664
No 265
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.73 E-value=0.00018 Score=55.50 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=48.8
Q ss_pred eEEEcCCeEEEEEEEeeecCceeEEEECCee-----e----c----------ccCcEEEEecCCceEEEecCCCCCCcEE
Q psy12426 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDIT-----I----I----------SKDRFKIVNDDKSTKLKVFDSKRGDSGI 286 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~-----~----~----------~~~~~~~~~~~~~~~l~i~~l~~~~~g~ 286 (616)
..+.+|+++.|.|.........+.|+|.... + . -..|..+..++ +|.|.++...|+|.
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G~ 84 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTGF 84 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCEE
Confidence 3467899999999776555569999996321 1 0 01233333333 99999999999999
Q ss_pred EEEEEEcCCC
Q psy12426 287 YTLAVKNSWG 296 (616)
Q Consensus 287 y~c~a~n~~g 296 (616)
|+|.+.+...
T Consensus 85 Y~~~v~~~~~ 94 (105)
T cd05774 85 YTLQTITTNF 94 (105)
T ss_pred EEEEEEeCCc
Confidence 9999998763
No 266
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=97.71 E-value=0.0006 Score=51.60 Aligned_cols=81 Identities=41% Similarity=0.684 Sum_probs=60.8
Q ss_pred CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcccc--ccceEEeccccCCCeEEEEEEEEecC
Q psy12426 312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV--SGTYTRAENLIEGHDYNFRVKAVNKI 389 (616)
Q Consensus 312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~--~~~~~~i~~L~~~~~y~~~v~a~n~~ 389 (616)
+|.+ +.+......++.|.|..+.... ..+..|.+.+.......|...... ....+.+.+|.+++.|.+++.+.+..
T Consensus 3 ~p~~-~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~ 80 (93)
T cd00063 3 PPTN-LRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80 (93)
T ss_pred CCCC-cEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCC
Confidence 3443 5555666789999999765432 357889999887655566666553 66789999999999999999999887
Q ss_pred cCCCC
Q psy12426 390 GESLP 394 (616)
Q Consensus 390 g~~~~ 394 (616)
|.+.+
T Consensus 81 ~~~~~ 85 (93)
T cd00063 81 GESPP 85 (93)
T ss_pred ccCCC
Confidence 76654
No 267
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.68 E-value=0.00026 Score=55.32 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=24.4
Q ss_pred CCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426 84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPG 112 (616)
Q Consensus 84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~ 112 (616)
...+|+|.+|+..|+|.|+|...++....
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~ 100 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDN 100 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCc
Confidence 46799999999999999999999554433
No 268
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.68 E-value=0.00019 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.668 Sum_probs=22.5
Q ss_pred eEEEEEEEee-ecCCeeeeeeCCeeee
Q psy12426 19 TLKFDANIIG-EPVPHVDWRAGGNPLN 44 (616)
Q Consensus 19 ~v~l~C~~~g-~P~p~v~W~~~~~~l~ 44 (616)
.++|+|.+.| +|.+.|+|+|+|+.|.
T Consensus 1 ~~~LtC~a~g~~P~~~ItW~k~g~~l~ 27 (83)
T cd07705 1 KAKLRCTSSGSKPAANIKWRKGDQELE 27 (83)
T ss_pred CEEEEEEecCccCCCEeEEEECCEECC
Confidence 3789999776 6999999999999876
No 269
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.68 E-value=0.00087 Score=52.86 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=51.6
Q ss_pred CcceEEEcCCeEEEEEEEeeec----CceeEEEE---------------CCeeec-cc----CcEEEEe--cCCceEEEe
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEP----IPTKEWLC---------------NDITII-SK----DRFKIVN--DDKSTKLKV 276 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p----~~~~~W~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~i 276 (616)
+..+.+..|+.+.|.|...... ...+.|.+ ++.... .. .|..+.. .....++.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 3557788999999999997642 35899943 222221 00 2333322 134569999
Q ss_pred cCCCCCCcEEEEEEEEcCCCC
Q psy12426 277 FDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 277 ~~l~~~~~g~y~c~a~n~~g~ 297 (616)
.+++..|.|.|+|.+.|..+.
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCc
Confidence 999999999999999996654
No 270
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.66 E-value=0.00015 Score=55.86 Aligned_cols=83 Identities=7% Similarity=0.014 Sum_probs=50.8
Q ss_pred CCceEecCCCeEEEEEEEeeecCC--eeeeeeCCeeeee--ccceEEEeecC--CC-CCceeEeeeccCCccceeecccc
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVP--HVDWRAGGNPLNL--RPIWEKCAQTE--GD-TPKGKVLDLIEGNHPIWEKCAQT 81 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~l~~--~G~Y~C~a~n~--~~-~~~~~v~~~~~~~~p~w~~~~~~ 81 (616)
+.+..+.+|++|.|.|.- .|.. .+.|||+...... =..|.=. .+. .+ ...++..
T Consensus 5 ~~p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~-~~~~~~gp~~~gR~~---------------- 65 (105)
T cd05774 5 LVPPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIIS-TNSSTPGPAYSGRET---------------- 65 (105)
T ss_pred ccCCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECC-CcccccCcccCCcEE----------------
Confidence 555668899999999964 3544 7999996432110 0011110 000 00 0111111
Q ss_pred CCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426 82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGG 110 (616)
Q Consensus 82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g 110 (616)
....++|.|.+++..|+|.|.|.+.+..+
T Consensus 66 ~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~ 94 (105)
T cd05774 66 IYPNGSLLIQNVTQKDTGFYTLQTITTNF 94 (105)
T ss_pred EeCCCcEEEecCCcccCEEEEEEEEeCCc
Confidence 33467999999999999999999997664
No 271
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.66 E-value=0.00024 Score=56.78 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=53.4
Q ss_pred CcceEEEcCCeEEEEEEEee--ecCceeEEEECC--ee---ec--------------ccCcEEEEecC--CceEEEecCC
Q psy12426 223 LSDIKVRAGSNFEFDINVIG--EPIPTKEWLCND--IT---II--------------SKDRFKIVNDD--KSTKLKVFDS 279 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~--~p~~~~~W~~~~--~~---~~--------------~~~~~~~~~~~--~~~~l~i~~l 279 (616)
+..+.+.+|++++|.|.+.+ .+...+.|++.. .. +. ...++.+.... ....|+|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 35577889999999999987 677789999842 11 00 12455555444 5678999999
Q ss_pred CCCCcEEEEEEEEc
Q psy12426 280 KRGDSGIYTLAVKN 293 (616)
Q Consensus 280 ~~~~~g~y~c~a~n 293 (616)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 272
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.66 E-value=9.2e-05 Score=56.00 Aligned_cols=51 Identities=10% Similarity=0.030 Sum_probs=39.3
Q ss_pred CCceEecCCCeEEEEEEEe-eecCCe--eeeeeCCeeeee--------------------------ccceEEEeecCCCC
Q psy12426 9 LGDIKLSAGTTLKFDANII-GEPVPH--VDWRAGGNPLNL--------------------------RPIWEKCAQTEGDT 59 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~-g~P~p~--v~W~~~~~~l~~--------------------------~G~Y~C~a~n~~~~ 59 (616)
+....+.+|+.++|+|.+. |.|.+. |.|||++..|.. ...|+|+|.+..++
T Consensus 8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 4455579999999999965 588887 799999887643 34888888887543
No 273
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.65 E-value=0.00033 Score=53.18 Aligned_cols=73 Identities=7% Similarity=0.028 Sum_probs=48.9
Q ss_pred CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT 81 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~ 81 (616)
|.|-. +....|.+|++|+|.|...- +.-.+.|+|+|..... |......
T Consensus 2 P~l~a--~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~-----------------------------~~~~~~~ 49 (94)
T cd05711 2 PFLSA--HPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPV-----------------------------LHLYEKH 49 (94)
T ss_pred CEEEe--cCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCc-----------------------------eeccccc
Confidence 44542 34566899999999998654 4447999999864320 0000000
Q ss_pred -CCCCCceEecCcccCCeEEEEEEEE
Q psy12426 82 -EGDTPKGKVLDLIEGNQYEFRVLAV 106 (616)
Q Consensus 82 -~~~~~~l~i~~l~~~~~~~y~c~a~ 106 (616)
......+.|..+.++|.|.|+|...
T Consensus 50 ~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 50 HGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCeEEEEEEecCCCcccCEEEEEEEE
Confidence 1123478999999999999999976
No 274
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.65 E-value=0.0002 Score=57.11 Aligned_cols=90 Identities=8% Similarity=0.056 Sum_probs=52.3
Q ss_pred CCCceEecCCCeEEEEEEEe-eecCCeeeeeeCCeeeeeccce-EEE---eecCCCCCceeEeeeccCCccceeeccccC
Q psy12426 8 HLGDIKLSAGTTLKFDANII-GEPVPHVDWRAGGNPLNLRPIW-EKC---AQTEGDTPKGKVLDLIEGNHPIWEKCAQTE 82 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~l~~~G~Y-~C~---a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~ 82 (616)
+|..+.+.+|++|.|.|... ......+.|++....-...-.+ .+. .........+++.. .....
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~-----------~~~~~ 75 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTF-----------SGNGS 75 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEE-----------EEETT
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeee-----------eeccc
Confidence 47888999999999999987 4556689999954311000000 000 00000000001100 00002
Q ss_pred CCCCceEecCcccCCeEEEEEEEEcC
Q psy12426 83 GDTPKGKVLDLIEGNQYEFRVLAVNK 108 (616)
Q Consensus 83 ~~~~~l~i~~l~~~~~~~y~c~a~n~ 108 (616)
....+|.|.+|++.|+|.|.|.....
T Consensus 76 ~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 76 QNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTEEEEEESSESGGGEEEEEEEEEES
T ss_pred CCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 23568999999999999999999854
No 275
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.63 E-value=0.00067 Score=53.79 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=50.7
Q ss_pred CcceEEEcCCeEEEEEEEeeec----CceeEEEEC----Cee--ec---------cc----CcEEEEe--cCCceEEEec
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEP----IPTKEWLCN----DIT--II---------SK----DRFKIVN--DDKSTKLKVF 277 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p----~~~~~W~~~----~~~--~~---------~~----~~~~~~~--~~~~~~l~i~ 277 (616)
+..+.+.+|+++.|.|.....+ ...+.|++. +.. +. .. .|..+.. .....+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4668899999999999987543 246999752 111 10 01 1222111 1235689999
Q ss_pred CCCCCCcEEEEEEEEcCCCC
Q psy12426 278 DSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 278 ~l~~~~~g~y~c~a~n~~g~ 297 (616)
+++..|+|.|.|.+.|..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999986554
No 276
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.63 E-value=0.00023 Score=55.78 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=48.3
Q ss_pred CCCeEEEEEEEeeec------CCeeeeeeCCe----e--ee--eccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426 16 AGTTLKFDANIIGEP------VPHVDWRAGGN----P--LN--LRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT 81 (616)
Q Consensus 16 ~g~~v~l~C~~~g~P------~p~v~W~~~~~----~--l~--~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~ 81 (616)
.|++|+|.|.....+ .+.|.|+|... . +- ..|.+.- ...-++++... ..
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~-----~~~~~~r~~~~------------~~ 63 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKV-----YGSGRVRVPLY------------PA 63 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEE-----cCCCceEEEee------------CC
Confidence 489999999977654 46899999731 1 10 0121110 01111122210 11
Q ss_pred CCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426 82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGG 110 (616)
Q Consensus 82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g 110 (616)
.....+|.|.+++..|+|.|.|.+.+..+
T Consensus 64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~ 92 (106)
T cd05714 64 DPGDASLVITDLRLEDSGRYRCEVIDGIE 92 (106)
T ss_pred CCCcceEEECCCCHHHCEEEEEEEEcCCC
Confidence 33467999999999999999999997544
No 277
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.61 E-value=0.00058 Score=52.84 Aligned_cols=76 Identities=16% Similarity=0.308 Sum_probs=47.9
Q ss_pred CCeEEEEEEEeeec---CceeEEEECCe-----------eec------ccCcEEEEe---cCCceEEEecCCCCCCcEEE
Q psy12426 231 GSNFEFDINVIGEP---IPTKEWLCNDI-----------TII------SKDRFKIVN---DDKSTKLKVFDSKRGDSGIY 287 (616)
Q Consensus 231 g~~~~l~c~~~~~p---~~~~~W~~~~~-----------~~~------~~~~~~~~~---~~~~~~l~i~~l~~~~~g~y 287 (616)
|+++.|.|...... ...+.|++... ... -..|..+.. ..+..+|.|.+++..|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 56788888875321 23577776441 111 002333321 13456899999999999999
Q ss_pred EEEEEcCCCCceeeEEEEE
Q psy12426 288 TLAVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 288 ~c~a~n~~g~~~~~~~l~v 306 (616)
+|.+.+..+.......|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987666555555544
No 278
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.60 E-value=0.00023 Score=53.64 Aligned_cols=27 Identities=26% Similarity=0.676 Sum_probs=23.9
Q ss_pred CCeEEEEEE-EeeecCCeeeeeeCCeee
Q psy12426 17 GTTLKFDAN-IIGEPVPHVDWRAGGNPL 43 (616)
Q Consensus 17 g~~v~l~C~-~~g~P~p~v~W~~~~~~l 43 (616)
|+.+.|+|. ..|+|+|.|+|+.++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 789999997 678999999999999887
No 279
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.59 E-value=0.00028 Score=55.31 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=48.5
Q ss_pred CCCeEEEEEEEeeec------CCeeeeeeCCee-eeeccce-EEE-eecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426 16 AGTTLKFDANIIGEP------VPHVDWRAGGNP-LNLRPIW-EKC-AQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP 86 (616)
Q Consensus 16 ~g~~v~l~C~~~g~P------~p~v~W~~~~~~-l~~~G~Y-~C~-a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~ 86 (616)
.|++|+|.|.....| ...|.|+|.... ....-.| .+. ..+..+.-.+++... .......
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~------------~~~~~~~ 68 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR------------RAHDLDA 68 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec------------CCCCCcE
Confidence 589999999977653 356999997521 1100001 000 001111111222210 0012356
Q ss_pred ceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426 87 KGKVLDLIEGNQYEFRVLAVNKGGPG 112 (616)
Q Consensus 87 ~l~i~~l~~~~~~~y~c~a~n~~g~~ 112 (616)
+|.|.+++..|+|.|+|.+.+..+..
T Consensus 69 sL~I~~v~~~DsG~Y~C~v~~~~~~~ 94 (106)
T cd05877 69 SLVITDLRLEDYGRYRCEVIDGLEDE 94 (106)
T ss_pred EEEEccCChHHCEEEEEEEEecccce
Confidence 89999999999999999998765543
No 280
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.56 E-value=0.00022 Score=54.93 Aligned_cols=78 Identities=12% Similarity=0.137 Sum_probs=47.1
Q ss_pred EecCCCeEEEEEEEeee--cCCeeeeeeCCeeeeeccceEEEeecCCCCC---ceeEeeeccCCccceeeccccCCCCCc
Q psy12426 13 KLSAGTTLKFDANIIGE--PVPHVDWRAGGNPLNLRPIWEKCAQTEGDTP---KGKVLDLIEGNHPIWEKCAQTEGDTPK 87 (616)
Q Consensus 13 ~v~~g~~v~l~C~~~g~--P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~---~~~v~~~~~~~~p~w~~~~~~~~~~~~ 87 (616)
.|.+|++|+|.|...+. ....+.|||.... +.-++.+.-..+.. ..+.. .. .......
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g----~~~~~l~~~~~~~~~~~~~rf~-----------~~--~~~~~~~ 64 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPG----SAPRYLIYEDSDRPSGIPDRFS-----------GS--KSGNTAS 64 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCC----CCccEEEEeccccCCCCCCCEE-----------EE--ccCCEEE
Confidence 57899999999998765 5667999985431 00011110000000 01111 00 0123457
Q ss_pred eEecCcccCCeEEEEEEEEc
Q psy12426 88 GKVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 88 l~i~~l~~~~~~~y~c~a~n 107 (616)
|+|.+++++|+|.|.|.+.+
T Consensus 65 L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 65 LTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred EEECCCChhhCEEEEEEEcc
Confidence 99999999999999999874
No 281
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.55 E-value=0.00044 Score=52.55 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=46.4
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecc------------------cCcEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIIS------------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 292 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~ 292 (616)
|++++|.|.........+.|++....... ..|..+.. ..+|.|.+++..|+|.|+|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~---~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP---NGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC---CceEEEccCCchhcEEEEEEEE
Confidence 67899999888766778999986533110 12222222 2699999999999999999999
Q ss_pred cCCCC
Q psy12426 293 NSWGT 297 (616)
Q Consensus 293 n~~g~ 297 (616)
...|.
T Consensus 78 ~~~~~ 82 (92)
T cd05741 78 STNGV 82 (92)
T ss_pred cCCCc
Confidence 87644
No 282
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.54 E-value=0.00037 Score=53.64 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=50.1
Q ss_pred EEEcCCeEEEEEEEeee--cCceeEEEECCe--ee---c---------ccCcEEEEecCCceEEEecCCCCCCcEEEEEE
Q psy12426 227 KVRAGSNFEFDINVIGE--PIPTKEWLCNDI--TI---I---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA 290 (616)
Q Consensus 227 ~v~~g~~~~l~c~~~~~--p~~~~~W~~~~~--~~---~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~ 290 (616)
.+.+|+++.|.|..... ....+.|++... .+ . ...++..........|.|.++++.|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998765 456799987432 11 0 12356665556677899999999999999999
Q ss_pred EEc
Q psy12426 291 VKN 293 (616)
Q Consensus 291 a~n 293 (616)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 875
No 283
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.53 E-value=0.00045 Score=55.14 Aligned_cols=86 Identities=8% Similarity=0.002 Sum_probs=53.2
Q ss_pred CCCCceEecCCCeEEEEEEEeee-cCCeeeeeeCCeeeeeccceEEEeecCCC---CCceeEeeeccCCccceeeccccC
Q psy12426 7 RHLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAGGNPLNLRPIWEKCAQTEGD---TPKGKVLDLIEGNHPIWEKCAQTE 82 (616)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~---~~~~~v~~~~~~~~p~w~~~~~~~ 82 (616)
+.|..+.+.+|++|+|.|...+. ....+.|||... .+...+.+..... .-.+++... ....
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~----~~~~~~l~~~~~~~~~~~~~R~~~~-----------~~~~ 68 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLP----SGEMTFLIRQKSIYGNATKGRYSVN-----------FQKA 68 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECC----CCceEEEEEecCccCCccCCeEEEE-----------Eecc
Confidence 45888999999999999997653 456799998532 1112222211100 001122110 0001
Q ss_pred CCCCceEecCcccCCeEEEEEEEEc
Q psy12426 83 GDTPKGKVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 83 ~~~~~l~i~~l~~~~~~~y~c~a~n 107 (616)
....+|+|.++++.|+|.|.|.+..
T Consensus 69 ~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 69 QKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred CCEEEEEECCCCHHHCEEEEEEEEC
Confidence 2345799999999999999999984
No 284
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.53 E-value=0.00087 Score=51.62 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=49.8
Q ss_pred CeEEEEEEEeeec---CceeEEEECCee----e-----------cc--cCcEEEEecC-CceEEEecCCCCCCcEEEEEE
Q psy12426 232 SNFEFDINVIGEP---IPTKEWLCNDIT----I-----------IS--KDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLA 290 (616)
Q Consensus 232 ~~~~l~c~~~~~p---~~~~~W~~~~~~----~-----------~~--~~~~~~~~~~-~~~~l~i~~l~~~~~g~y~c~ 290 (616)
+++.|.|.....+ ...+.|++.... + .. ..|..+.... ...+|+|.+++..|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 3678999887654 447999985431 0 01 1122222111 456999999999999999999
Q ss_pred EEc-CCCCceeeEEEEE
Q psy12426 291 VKN-SWGTDKGTAKVTV 306 (616)
Q Consensus 291 a~n-~~g~~~~~~~l~v 306 (616)
+.+ ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5577776666665
No 285
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.52 E-value=0.00058 Score=52.25 Aligned_cols=77 Identities=16% Similarity=0.311 Sum_probs=51.2
Q ss_pred cCCeEEEEEEEee-ecCceeEEEECCeeec--c-----------cCcE--EEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 230 AGSNFEFDINVIG-EPIPTKEWLCNDITII--S-----------KDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 230 ~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~--~-----------~~~~--~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
.|++++|.|.... .....+.|++....+. . ..++ ++.......+|+|.+++..|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 5889999998765 4455789988643221 0 0111 122234457999999999999999999998
Q ss_pred CCCCc-eeeEEEEE
Q psy12426 294 SWGTD-KGTAKVTV 306 (616)
Q Consensus 294 ~~g~~-~~~~~l~v 306 (616)
..|.. ...+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 76654 44444443
No 286
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.51 E-value=0.00043 Score=52.52 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=27.4
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeee-cCC-eeeeeeCCeee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-PVP-HVDWRAGGNPL 43 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~l 43 (616)
||.+...++... |+.++|.|.+.|. |.. .|+|+|+|+.+
T Consensus 2 pP~v~v~~~~~~----~~~~~L~C~a~gF~P~~i~v~W~~~g~~~ 42 (93)
T cd07698 2 PPEVRVTRKRAP----DGSLTLSCHATGFYPRDIEVTWLRDGEDS 42 (93)
T ss_pred CCEEEEEecCCC----CCcEEEEEEEEEEeCCCcEEEEEECCEEC
Confidence 566654433322 7889999999995 544 79999999643
No 287
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.51 E-value=0.00056 Score=56.64 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=30.1
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEeee-cC-CeeeeeeCCee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-PV-PHVDWRAGGNP 42 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~ 42 (616)
||.+... +......+|+.++|.|.+.|. |. +.|+|+|+|..
T Consensus 38 ~P~v~~~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 38 PPRVRLS-LEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred CCceEEe-CCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 5666533 444555589999999999985 54 48999999864
No 288
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.51 E-value=0.00031 Score=50.83 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=41.3
Q ss_pred eEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCC
Q psy12426 19 TLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN 97 (616)
Q Consensus 19 ~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~ 97 (616)
.+.|+|.+ .+.|++.|+|+|+++++.. .-.+.-.+. ....+ ...|.|.--.+.|
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~--~~~~~~~~~---~~~t~--------------------~S~L~~~p~~eDd 55 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTG--KSTVEETWS---RMFTV--------------------TSQLMLKVTKEDD 55 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcC--cccceeccC---CCcEE--------------------EEEEEEECchhhC
Confidence 37899994 5699999999999998862 211100000 00011 2345555445566
Q ss_pred eEEEEEEEEcCCC
Q psy12426 98 QYEFRVLAVNKGG 110 (616)
Q Consensus 98 ~~~y~c~a~n~~g 110 (616)
--.|.|+|.|..-
T Consensus 56 G~~~~C~a~~~~l 68 (82)
T cd05883 56 GVPVICLVDHPAV 68 (82)
T ss_pred CCEEEEEEcCccc
Confidence 6789999998653
No 289
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.50 E-value=0.0012 Score=51.89 Aligned_cols=77 Identities=17% Similarity=0.297 Sum_probs=53.7
Q ss_pred CCeEEEEEEEeeec----------CceeEEEECC--eee--c--c----------cCcEEEE---ecCCceEEEecCCCC
Q psy12426 231 GSNFEFDINVIGEP----------IPTKEWLCND--ITI--I--S----------KDRFKIV---NDDKSTKLKVFDSKR 281 (616)
Q Consensus 231 g~~~~l~c~~~~~p----------~~~~~W~~~~--~~~--~--~----------~~~~~~~---~~~~~~~l~i~~l~~ 281 (616)
|++++|.|.....+ ...+.|++.. ... . . ..|+.+. ......+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 78899999987654 3578999852 110 0 0 1233332 123557899999999
Q ss_pred CCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426 282 GDSGIYTLAVKNSWGTDKGTAKVTVL 307 (616)
Q Consensus 282 ~~~g~y~c~a~n~~g~~~~~~~l~v~ 307 (616)
.|+|.|.|.+....+.......|.|.
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 99999999999876667777777664
No 290
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.50 E-value=0.00068 Score=54.28 Aligned_cols=87 Identities=9% Similarity=0.020 Sum_probs=50.9
Q ss_pred CCCCceEecCCCeEEEEEEEeeec------CCeeeeeeCCeeeeeccceEEEe-ecCC----CCCceeEeeeccCCccce
Q psy12426 7 RHLGDIKLSAGTTLKFDANIIGEP------VPHVDWRAGGNPLNLRPIWEKCA-QTEG----DTPKGKVLDLIEGNHPIW 75 (616)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~g~P------~p~v~W~~~~~~l~~~G~Y~C~a-~n~~----~~~~~~v~~~~~~~~p~w 75 (616)
+.|+.+.+.+|+.|+|.|.....+ ...+.|||....-.. ..... .+.. ..-++++...
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~---~~~~~~~~~~~~~~~~f~gR~~~~-------- 72 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKN---RPPVATNNRSRLVHESTRGRFRLL-------- 72 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCC---CCcEEEcCCCccccccccccEEEe--------
Confidence 468899999999999999754221 235899996421000 00000 0000 0011111110
Q ss_pred eeccccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426 76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n 107 (616)
+.......+|+|.+++++|+|.|.|+...
T Consensus 73 ---~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 73 ---GDLGKKNCSLLISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred ---cCCCCCEEEEEEccCChhhCeEEEEEEEc
Confidence 11123356899999999999999999874
No 291
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.46 E-value=0.00036 Score=53.41 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=49.4
Q ss_pred cCCCeEEEEEEEee-ecCCeeeeeeCCeeeee-cc---ceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceE
Q psy12426 15 SAGTTLKFDANIIG-EPVPHVDWRAGGNPLNL-RP---IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGK 89 (616)
Q Consensus 15 ~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~-~G---~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~ 89 (616)
..|++|+|.|.... .....|.|+|....+.. .+ ...+...+. .-++++.. .....+|.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~--~f~~R~~~---------------~~~~~sL~ 64 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDP--SYKERVNF---------------SQNDYSLQ 64 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCC--CceeeEEe---------------cCCceeEE
Confidence 46999999998654 45567999998543332 11 111111110 00111110 22357899
Q ss_pred ecCcccCCeEEEEEEEEcCCCC
Q psy12426 90 VLDLIEGNQYEFRVLAVNKGGP 111 (616)
Q Consensus 90 i~~l~~~~~~~y~c~a~n~~g~ 111 (616)
|.+++..|+|.|.|...+..|.
T Consensus 65 I~~~~~~DsG~Y~c~v~~~~~~ 86 (97)
T cd05775 65 ISNLKMEDAGSYRAEINTKNGV 86 (97)
T ss_pred ECCCchHHCEEEEEEEEcCCCC
Confidence 9999999999999999976653
No 292
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.42 E-value=0.00077 Score=52.89 Aligned_cols=29 Identities=7% Similarity=-0.012 Sum_probs=24.1
Q ss_pred CCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426 84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPG 112 (616)
Q Consensus 84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~ 112 (616)
...+|+|.+|+..|+|.|.|.........
T Consensus 70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~ 98 (110)
T cd05878 70 GDASLEISRLRSSDSGVYRCEVMHGIEDE 98 (110)
T ss_pred CcEEEEECCCChhhCEEEEEEEEeCCCcc
Confidence 45689999999999999999998654433
No 293
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.41 E-value=0.00048 Score=57.49 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426 9 LGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK 87 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~ 87 (616)
...++|.+|++|+|.|.. .+...++|+|+|..+.+. .|.+.-....+.-++++.-. ........
T Consensus 22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~Ia---tY~~~g~~i~~~Fk~Rve~m------------S~s~~~St 86 (189)
T PHA02987 22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIA---GYGPCGPVIVDKFKNKIEYL------------SKSFNEST 86 (189)
T ss_pred eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEE---EEecCCcEEChhhcCeEEEe------------ccCCCcce
Confidence 456789999999999996 476788999999765332 33321100000011122111 00224578
Q ss_pred eEecCcccCCeEEEEEEEE
Q psy12426 88 GKVLDLIEGNQYEFRVLAV 106 (616)
Q Consensus 88 l~i~~l~~~~~~~y~c~a~ 106 (616)
++|.++...|+|.|.|...
T Consensus 87 ItIknVt~sDeGcY~C~F~ 105 (189)
T PHA02987 87 ILIKNVSLKDNGCYTCIFN 105 (189)
T ss_pred EEEEeCChhhCeEEEEEEE
Confidence 9999999999999999976
No 294
>PHA03376 BARF1; Provisional
Probab=97.41 E-value=0.0073 Score=50.25 Aligned_cols=79 Identities=10% Similarity=-0.019 Sum_probs=43.9
Q ss_pred CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeE
Q psy12426 170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 249 (616)
Q Consensus 170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~ 249 (616)
+..+|.|.+++++|.|.|+|............+-. ..++ |-.+.+.... .....-+...+.|...|-|.|.++
T Consensus 85 gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehL--t~V~----~~~Lsv~a~~-~dFp~~~~~~i~C~sggfP~P~~~ 157 (221)
T PHA03376 85 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL--SVVK----PLTLSVHSER-SQFPDFSVLTVTCTVNAFPHPHVQ 157 (221)
T ss_pred CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeee--eeee----cceEEEEecc-ccCCCCCeeEEEEecCCcCCchhe
Confidence 44478899999999999999887644322111000 0000 0000000000 001114456789998888999999
Q ss_pred EEECCe
Q psy12426 250 WLCNDI 255 (616)
Q Consensus 250 W~~~~~ 255 (616)
|.-+..
T Consensus 158 Wle~~~ 163 (221)
T PHA03376 158 WLMPEG 163 (221)
T ss_pred eccccC
Confidence 997654
No 295
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.40 E-value=0.0017 Score=51.74 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=50.3
Q ss_pred CcceEEEcCCeEEEEEEEeeec----CceeEEEECCe------eec----------cc----CcEEEEe--cCCceEEEe
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEP----IPTKEWLCNDI------TII----------SK----DRFKIVN--DDKSTKLKV 276 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p----~~~~~W~~~~~------~~~----------~~----~~~~~~~--~~~~~~l~i 276 (616)
+..+.+..|+.++|.|...... ...+.|++... .+. .. .|+.+.. .....+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4567888999999999986542 24699976321 110 01 1222221 123468999
Q ss_pred cCCCCCCcEEEEEEEEcCCCC
Q psy12426 277 FDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 277 ~~l~~~~~g~y~c~a~n~~g~ 297 (616)
.+++.+|+|.|.|.+.|..+.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999986543
No 296
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.39 E-value=0.0007 Score=52.38 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=23.6
Q ss_pred CCceEecCcccCCeEEEEEEEEcCCCC
Q psy12426 85 TPKGKVLDLIEGNQYEFRVLAVNKGGP 111 (616)
Q Consensus 85 ~~~l~i~~l~~~~~~~y~c~a~n~~g~ 111 (616)
..+|.|.+|+..|+|.|.|.+.|..+.
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 90 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFY 90 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcE
Confidence 568999999999999999999976553
No 297
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.37 E-value=0.0018 Score=54.14 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=61.3
Q ss_pred cceEEEcCCeEEEEEEEe-eecCceeEEEECCeeec----------c--cCcEE-EEecCCceEEEecCCCCCCcEEEEE
Q psy12426 224 SDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITII----------S--KDRFK-IVNDDKSTKLKVFDSKRGDSGIYTL 289 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~~~~----------~--~~~~~-~~~~~~~~~l~i~~l~~~~~g~y~c 289 (616)
..+.|.+|+++.|.|... +...+.+.|+|....+. + ..|+. +...-....++|.++...|+|.|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 457789999999999984 65678899999643321 1 12444 3334455799999999999999999
Q ss_pred EEEc-CCC-CceeeEEEEEec
Q psy12426 290 AVKN-SWG-TDKGTAKVTVLD 308 (616)
Q Consensus 290 ~a~n-~~g-~~~~~~~l~v~~ 308 (616)
.... ..| ..+...-|.|..
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEecCCCCCceeEEEEEEEc
Confidence 8876 445 556666666654
No 298
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.37 E-value=0.00083 Score=50.98 Aligned_cols=68 Identities=7% Similarity=-0.055 Sum_probs=47.3
Q ss_pred ceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
...|..|++++|.|.... ....+.|+|++...................|.|..++++|+|.|+|....
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 456779999999997755 45679999988653210000011122345889999999999999999864
No 299
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.35 E-value=0.0011 Score=47.84 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=20.9
Q ss_pred eEEEEEEEeee-cC-CeeeeeeCCeeee
Q psy12426 19 TLKFDANIIGE-PV-PHVDWRAGGNPLN 44 (616)
Q Consensus 19 ~v~l~C~~~g~-P~-p~v~W~~~~~~l~ 44 (616)
.++|.|.|.|. |+ ..|+|+|||+++.
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~ 28 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVT 28 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECC
Confidence 37899999985 55 5899999998743
No 300
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.29 E-value=0.00048 Score=53.94 Aligned_cols=44 Identities=11% Similarity=0.277 Sum_probs=33.8
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEee-ecCC-eeeeeeCCeeee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIG-EPVP-HVDWRAGGNPLN 44 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~l~ 44 (616)
||.+..-+|....+.+++.++|.|.|.| .|.. .|+|+|||+.+.
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~ 47 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVT 47 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence 5766555566666667888999999998 5653 789999998876
No 301
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.21 E-value=0.0016 Score=50.94 Aligned_cols=89 Identities=9% Similarity=0.051 Sum_probs=46.2
Q ss_pred eEecCCCeEEEEEEEeeec-CCeeeeeeCCeeeeecc-ceEEEeecCCCCCceeEeeeccCC-ccceeeccccCCCCCce
Q psy12426 12 IKLSAGTTLKFDANIIGEP-VPHVDWRAGGNPLNLRP-IWEKCAQTEGDTPKGKVLDLIEGN-HPIWEKCAQTEGDTPKG 88 (616)
Q Consensus 12 ~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~l~~~G-~Y~C~a~n~~~~~~~~v~~~~~~~-~p~w~~~~~~~~~~~~l 88 (616)
+.|.+|++|+|.|.+.+.. ...+.|||....-...+ .|--...+.. . ... .+.- .+..............|
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~-~---~~~--~~~~~~~rf~~~~~~~~~~~~L 74 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLG-G---ATY--GEEVSQEKFSIRVTSDSSRYRL 74 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCC-C---eEE--ccccccCcEEEEEECCCCEEEE
Confidence 3689999999999987643 45799998643200000 0000000000 0 000 0000 00000000001223469
Q ss_pred EecCcccCCeEEEEEEEE
Q psy12426 89 KVLDLIEGNQYEFRVLAV 106 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~ 106 (616)
+|.++++.|+|.|.|...
T Consensus 75 ~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 75 HINRVKPEDSGTYFCMTV 92 (107)
T ss_pred EECCCCHHHCEEEEEeEc
Confidence 999999999999999986
No 302
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.18 E-value=0.0043 Score=48.31 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=50.9
Q ss_pred CCeEEEEEEEeeec-------CceeEEEECC-----eee----cc----------cCcEEEEec---CCceEEEecCCCC
Q psy12426 231 GSNFEFDINVIGEP-------IPTKEWLCND-----ITI----IS----------KDRFKIVND---DKSTKLKVFDSKR 281 (616)
Q Consensus 231 g~~~~l~c~~~~~p-------~~~~~W~~~~-----~~~----~~----------~~~~~~~~~---~~~~~l~i~~l~~ 281 (616)
|+++.|.|...-.| .+.+.|.+.. ... .. ..|..+... .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 56788888865332 3578888741 110 00 123334321 2467999999999
Q ss_pred CCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426 282 GDSGIYTLAVKNSWGTDKGTAKVTVL 307 (616)
Q Consensus 282 ~~~g~y~c~a~n~~g~~~~~~~l~v~ 307 (616)
.|+|.|+|.+............|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999866666667766664
No 303
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.18 E-value=0.00058 Score=52.56 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=31.2
Q ss_pred CccCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeCCeeee
Q psy12426 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAGGNPLN 44 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~l~ 44 (616)
|.+.+-+|....+..|+.++|.|.|.|.-++ .|+|+|||+++.
T Consensus 1 P~v~l~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 1 PSVYVLPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred CeEEEeCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 4444445555556678999999999994443 479999998875
No 304
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.17 E-value=0.0024 Score=49.84 Aligned_cols=34 Identities=26% Similarity=0.540 Sum_probs=27.4
Q ss_pred ceEecCCCeEEEEEEEee-ecC-CeeeeeeCCeeee
Q psy12426 11 DIKLSAGTTLKFDANIIG-EPV-PHVDWRAGGNPLN 44 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~l~ 44 (616)
...+..|+.++|.|.+.| .|. ..|+|+|||+.+.
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~ 50 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS 50 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence 344567889999999887 564 5799999999875
No 305
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.17 E-value=0.001 Score=51.24 Aligned_cols=83 Identities=8% Similarity=-0.009 Sum_probs=49.2
Q ss_pred eEecCCCeEEEEEEEee-ecCCeeeeeeCCeeeeeccceEEEeecCC--CCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426 12 IKLSAGTTLKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEKCAQTEG--DTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG 88 (616)
Q Consensus 12 ~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~--~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l 88 (616)
+.+.+|++|+|.|.... .+...+.|+|....-. -.....+.. ..-.++.... .........|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~----~~~l~~~~~~~~~~~~r~~~~-----------~~~~~~~~~L 66 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGC----CLIIVSEGSVQSQYEGRVSLT-----------DDPDNGVFTV 66 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCC----CeEEECCCccccccCCCEEEE-----------ecCCCCEEEE
Confidence 46899999999998654 4566799999753211 111110100 0011111110 0012234579
Q ss_pred EecCcccCCeEEEEEEEEcCC
Q psy12426 89 KVLDLIEGNQYEFRVLAVNKG 109 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~n~~ 109 (616)
+|.+++.+|+|.|.|.+....
T Consensus 67 ~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 67 TLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEcCCCHHHCEEEEEEcccCC
Confidence 999999999999999987543
No 306
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=97.17 E-value=0.032 Score=51.28 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=95.5
Q ss_pred CCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc---cccceEEeccccCCCeEEEEEEEEecCcCCCCccccCC
Q psy12426 324 KSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD---VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSP 400 (616)
Q Consensus 324 ~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~ 400 (616)
...+.+-|.+..+. +...|.|+....+.. +.+.+. ...-.+.-.++.++..|.+.+.+.+..+.-..+ +..
T Consensus 83 ~~~~~~~w~~~~d~---~~~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs--f~g 156 (343)
T COG3401 83 PKSVKVFWSPHPDV---SVGKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS--FTG 156 (343)
T ss_pred cceeeecccccCCC---CCCeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceee--eee
Confidence 34589999975443 567888888765544 444332 222334555888999999999998776653332 222
Q ss_pred EEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeE
Q psy12426 401 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEY 479 (616)
Q Consensus 401 ~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y 479 (616)
+.. ++...|..-.++.+.....+.+.|+|..+.. +..|+|+-...+. ..........+.......+| |..|
T Consensus 157 VE~-~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~-----~~yy~IY~~~~g~e~~~~ia~t~~n~y~d~~egl--ga~~ 228 (343)
T COG3401 157 VEA-TPKAEPKEITNVRVSFDLGNNIELSEDGSEA-----EDYYRIYASDSGNEEYGFIAQTTENSYYDVKEGL--GAVE 228 (343)
T ss_pred eec-ccccCCceeeeeeeecCCCCcceeeccCccc-----cceEEEeccCCccccccceeeccccchhhhhhcc--Ccee
Confidence 222 2223333334455556678899999986543 2378888766554 33333333223333334444 7889
Q ss_pred EEEEEEEcCCC-CCCCCCC
Q psy12426 480 EFRVIAVNKGG-PGEPSKA 497 (616)
Q Consensus 480 ~~~v~a~n~~G-~g~~s~~ 497 (616)
.+.|.++...| .+..+..
T Consensus 229 ~y~VTtVd~~~~es~lp~~ 247 (343)
T COG3401 229 YYKVTTVDNTGFESDLPNE 247 (343)
T ss_pred EEEEEEEcCCcceeccCCc
Confidence 99999988554 5555543
No 307
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.17 E-value=0.0027 Score=50.55 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=49.0
Q ss_pred CCCceEecCCCeEEEEEEEeeec--CCeeeeeeCC--eeee-eccceEEEeecC--CCCCceeEeeeccCCccceeeccc
Q psy12426 8 HLGDIKLSAGTTLKFDANIIGEP--VPHVDWRAGG--NPLN-LRPIWEKCAQTE--GDTPKGKVLDLIEGNHPIWEKCAQ 80 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~l~-~~G~Y~C~a~n~--~~~~~~~v~~~~~~~~p~w~~~~~ 80 (616)
.|....+.+|++|+|.|...+.- ...+.|||.. +.+. +.-.|. ..... ....+++... ...
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~-~~~~~~~~~~~~~rf~~-----------~~~ 70 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINP-GGGETYYADSVKGRFTI-----------TRD 70 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEec-CCCceEeCcccCCcEEE-----------EEE
Confidence 47788899999999999876543 4569999853 2211 000000 00000 0000011110 000
Q ss_pred cCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426 81 TEGDTPKGKVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n 107 (616)
.......|+|.++.++|++.|.|.+..
T Consensus 71 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 71 TSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred ccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 011224699999999999999998874
No 308
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.17 E-value=0.0078 Score=47.03 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=32.8
Q ss_pred CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307 (616)
Q Consensus 270 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~ 307 (616)
+..+|.|.+++..|.|.|+|.+.+..........|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 45799999999999999999999988777777777664
No 309
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.16 E-value=0.0041 Score=47.87 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=48.4
Q ss_pred eEEEEEEEeeec---CceeEEEECCee-----e---c--------cc--CcEEEEe--cCCceEEEecCCCCCCcEEEEE
Q psy12426 233 NFEFDINVIGEP---IPTKEWLCNDIT-----I---I--------SK--DRFKIVN--DDKSTKLKVFDSKRGDSGIYTL 289 (616)
Q Consensus 233 ~~~l~c~~~~~p---~~~~~W~~~~~~-----~---~--------~~--~~~~~~~--~~~~~~l~i~~l~~~~~g~y~c 289 (616)
++.|.|...... ...+.|++.... + . .. .|..+.. .....+|+|.+++..|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 577888887544 447889883211 1 0 00 2333332 2345689999999999999999
Q ss_pred EEEc-CCCCceeeEEEEE
Q psy12426 290 AVKN-SWGTDKGTAKVTV 306 (616)
Q Consensus 290 ~a~n-~~g~~~~~~~l~v 306 (616)
.+.+ ..|.......|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 6666666666654
No 310
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.15 E-value=0.0026 Score=50.74 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=52.0
Q ss_pred CcceEEEcCCeEEEEEEEeee-cCceeEEEECC--ee---e---------cccCcEEEEe--cCCceEEEecCCCCCCcE
Q psy12426 223 LSDIKVRAGSNFEFDINVIGE-PIPTKEWLCND--IT---I---------ISKDRFKIVN--DDKSTKLKVFDSKRGDSG 285 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~-p~~~~~W~~~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~l~~~~~g 285 (616)
+..+.+..|+++.|.|..... ....+.|++.. .. + ....|+.+.. .....+|.|.+++..|+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg 85 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA 85 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence 456788999999999998754 45679999832 11 1 1124555542 345678999999999999
Q ss_pred EEEEEEEc
Q psy12426 286 IYTLAVKN 293 (616)
Q Consensus 286 ~y~c~a~n 293 (616)
.|.|.+..
T Consensus 86 ~Y~C~~~~ 93 (116)
T cd07706 86 KYFCALST 93 (116)
T ss_pred EEEEEEEC
Confidence 99999985
No 311
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.13 E-value=0.0022 Score=51.04 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=52.2
Q ss_pred CcceEEEcCCeEEEEEEEe-eecCceeEEEECCe-----eec--------------ccCcEEEEec--CCceEEEecCCC
Q psy12426 223 LSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDI-----TII--------------SKDRFKIVND--DKSTKLKVFDSK 280 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~-----~~~--------------~~~~~~~~~~--~~~~~l~i~~l~ 280 (616)
+..+.+..|+++.|.|... ......+.|++... .+. ...+..+... ....+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4567899999999999999 44566899998322 111 0123333322 346789999999
Q ss_pred CCCcEEEEEEEEcC
Q psy12426 281 RGDSGIYTLAVKNS 294 (616)
Q Consensus 281 ~~~~g~y~c~a~n~ 294 (616)
..|+|.|.|.+...
T Consensus 88 ~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 88 PSDSGTYFCQVSTS 101 (114)
T ss_dssp GGGEEEEEEEEEES
T ss_pred cCcCEEEEEEEEEC
Confidence 99999999999876
No 312
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.12 E-value=0.0059 Score=46.12 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=50.0
Q ss_pred eEEEEEEEeeec-CceeEEEECCe----eec-----------c--cCcEEEE-ecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 233 NFEFDINVIGEP-IPTKEWLCNDI----TII-----------S--KDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 233 ~~~l~c~~~~~p-~~~~~W~~~~~----~~~-----------~--~~~~~~~-~~~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
+++|.|.....+ ..++.|.+... .+. . ..|..+. ......+|.|.++...|.|.|+|.+.+
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 578899887433 34789987421 110 0 1233332 123356999999999999999999866
Q ss_pred -CCCCceeeEEEEE
Q psy12426 294 -SWGTDKGTAKVTV 306 (616)
Q Consensus 294 -~~g~~~~~~~l~v 306 (616)
..|....+..|.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 6788888877765
No 313
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.10 E-value=0.0034 Score=48.09 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=48.8
Q ss_pred CCeEEEEEEEeeecC-ceeEEEECCee----ec-----c--------cCcEEEE-ecCCceEEEecCCCCCCcEEEEEEE
Q psy12426 231 GSNFEFDINVIGEPI-PTKEWLCNDIT----II-----S--------KDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAV 291 (616)
Q Consensus 231 g~~~~l~c~~~~~p~-~~~~W~~~~~~----~~-----~--------~~~~~~~-~~~~~~~l~i~~l~~~~~g~y~c~a 291 (616)
|++++|.|....... ..+.|++.... +. . ..+..+. ......+|.|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998665433 36999884321 10 0 0122221 1234578999999999999999998
Q ss_pred Ec-CCCCceeeEEEEE
Q psy12426 292 KN-SWGTDKGTAKVTV 306 (616)
Q Consensus 292 ~n-~~g~~~~~~~l~v 306 (616)
.. ..|.......|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 75 5566565555554
No 314
>KOG4152|consensus
Probab=97.10 E-value=0.0041 Score=59.77 Aligned_cols=123 Identities=26% Similarity=0.458 Sum_probs=79.9
Q ss_pred EeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEE
Q psy12426 369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK 448 (616)
Q Consensus 369 ~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~ 448 (616)
.-..|..|..|.|+|.+.|..|.+.++......++ ..+.|.+|..+.+.. +-..+.|.|++|..++.+.|..|..+.
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc--~pG~P~apS~~ri~k-~~eGi~l~weppt~p~sg~Iieys~yl 726 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTC--APGKPTAPSGARIKK-TIEGISLVWEPPTKPGSGTIIEYSPYL 726 (830)
T ss_pred cccccccccceeeeeeeeeccCCCchhhheeeeec--cCCCCCCcccccccc-cccceeecccCCCCCCCcceEEeehhh
Confidence 33578899999999999999999988765444332 235666666655442 456799999998888777888888765
Q ss_pred eeCCC-------C--ceE--------eEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCC
Q psy12426 449 KPKYG-------P--WEK--------ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495 (616)
Q Consensus 449 ~~~~~-------~--~~~--------~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s 495 (616)
.-... + +.. +....+. .-.-+.+..-+-.-.|||.|.|+.|.|+..
T Consensus 727 Ai~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~-l~tA~~d~t~~paivfri~aknekGyGpat 789 (830)
T KOG4152|consen 727 AIITQAGATGVSQLPFMRSYCGIITTCVVTSGK-LITAVPDITTGPAIVFRIVAKNEKGYGPAT 789 (830)
T ss_pred HhhhhhhccCccccceeeeecccceeeEEeccc-ceeeccccccCcceEEEEEecCCCCCCcce
Confidence 32110 1 111 1111121 111122344466789999999999988743
No 315
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.08 E-value=0.0047 Score=45.14 Aligned_cols=72 Identities=33% Similarity=0.554 Sum_probs=47.4
Q ss_pred ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC---CCEEEccccc-cceEEeccccCCCeEEEEEEEEecCcC
Q psy12426 317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET---GRWVPMGDVS-GTYTRAENLIEGHDYNFRVKAVNKIGE 391 (616)
Q Consensus 317 ~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~---~~~~~~~~~~-~~~~~i~~L~~~~~y~~~v~a~n~~g~ 391 (616)
+.+......++.++|.++..... ..|.+.+..... ..|....... ...+.+.+|.+++.|.+++.|.+..|.
T Consensus 7 ~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g~ 82 (83)
T smart00060 7 LRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGE 82 (83)
T ss_pred EEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence 45555666699999996644321 455555543221 2344433322 478999999999999999999986553
No 316
>KOG4367|consensus
Probab=97.08 E-value=0.00057 Score=63.59 Aligned_cols=79 Identities=27% Similarity=0.361 Sum_probs=63.9
Q ss_pred cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCC
Q psy12426 422 GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAP 500 (616)
Q Consensus 422 ~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~ 500 (616)
..++++|.|..|..+ +.+..+|.++....++ ++.. ...+..+..++++|.-++.|.-||.|+|..|.+++|.....
T Consensus 451 ~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~fre--vy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~l 527 (699)
T KOG4367|consen 451 HNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFRE--VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL 527 (699)
T ss_pred cCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeE--EEecCceeEEecceecchhHHHHHHHhhccCCCcccceeEe
Confidence 578999999976654 4468999999977655 5544 34477889999999999999999999999999999986554
Q ss_pred EEe
Q psy12426 501 VTC 503 (616)
Q Consensus 501 ~~~ 503 (616)
.|.
T Consensus 528 qts 530 (699)
T KOG4367|consen 528 QTS 530 (699)
T ss_pred eec
Confidence 443
No 317
>KOG4152|consensus
Probab=97.05 E-value=0.001 Score=63.82 Aligned_cols=75 Identities=32% Similarity=0.564 Sum_probs=56.7
Q ss_pred CCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeee
Q psy12426 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKL 550 (616)
Q Consensus 471 ~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (616)
.+|-+|+.|+|||.|+|..|.|++|......++-+
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~p--------------------------------------------- 686 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAP--------------------------------------------- 686 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeeccC---------------------------------------------
Confidence 56889999999999999999999999888777643
Q ss_pred eeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEE
Q psy12426 551 SYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVER 595 (616)
Q Consensus 551 ~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~ 595 (616)
.-|.+|.... +..+-..|.|.|++|...+.|.|..|..+.
T Consensus 687 ----G~P~apS~~r-i~k~~eGi~l~weppt~p~sg~Iieys~yl 726 (830)
T KOG4152|consen 687 ----GKPTAPSGAR-IKKTIEGISLVWEPPTKPGSGTIIEYSPYL 726 (830)
T ss_pred ----CCCCCccccc-ccccccceeecccCCCCCCCcceEEeehhh
Confidence 1233443332 223556789999999877788888887654
No 318
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.01 E-value=0.0059 Score=48.84 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=50.5
Q ss_pred CCcceEEEcCCeEEEEEEEeeec------CceeEEEECCee------e--c---------ccCcEEEE--ecCCceEEEe
Q psy12426 222 QLSDIKVRAGSNFEFDINVIGEP------IPTKEWLCNDIT------I--I---------SKDRFKIV--NDDKSTKLKV 276 (616)
Q Consensus 222 ~~~~~~v~~g~~~~l~c~~~~~p------~~~~~W~~~~~~------~--~---------~~~~~~~~--~~~~~~~l~i 276 (616)
.|..+.+..|+.++|.|...... ...+.|++.... + . ...|+.+. ......+|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 35667899999999999875332 346899985321 0 0 01244442 2344578999
Q ss_pred cCCCCCCcEEEEEEEEcC
Q psy12426 277 FDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 277 ~~l~~~~~g~y~c~a~n~ 294 (616)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999988764
No 319
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.99 E-value=0.0029 Score=47.86 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=24.9
Q ss_pred cCCCeEEEEEEEee-ecCC-eeeeeeCCeeee
Q psy12426 15 SAGTTLKFDANIIG-EPVP-HVDWRAGGNPLN 44 (616)
Q Consensus 15 ~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~l~ 44 (616)
..|+.++|.|.|.| .|.. .++|+|||+.+.
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~ 43 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEET 43 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecC
Confidence 46899999999998 5554 689999999865
No 320
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.96 E-value=0.0053 Score=47.18 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=49.6
Q ss_pred eEEEcCCeEEEEEEEeee-cCceeEEEECCee-----e--------cccCcEEEEe--cCCceEEEecCCCCCCcEEEEE
Q psy12426 226 IKVRAGSNFEFDINVIGE-PIPTKEWLCNDIT-----I--------ISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTL 289 (616)
Q Consensus 226 ~~v~~g~~~~l~c~~~~~-p~~~~~W~~~~~~-----~--------~~~~~~~~~~--~~~~~~l~i~~l~~~~~g~y~c 289 (616)
+.+.+|++++|.|..... ....+.|++.... + ....++.+.. ......|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 457899999999988753 4567899985421 1 0123444432 2445789999999999999999
Q ss_pred EEEcC
Q psy12426 290 AVKNS 294 (616)
Q Consensus 290 ~a~n~ 294 (616)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98764
No 321
>KOG3632|consensus
Probab=96.93 E-value=0.0022 Score=66.42 Aligned_cols=222 Identities=15% Similarity=0.118 Sum_probs=123.8
Q ss_pred ccceeecCCeEEEEEeCCCCCC-CCceEEEEEEEEeCCCCCEEEccccccceEEecccc-CCCeEEEEEEEEecCcCCCC
Q psy12426 317 LKPSNITKSSCNLEWRAPRDDG-GTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLI-EGHDYNFRVKAVNKIGESLP 394 (616)
Q Consensus 317 ~~~~~~~~~~~~l~W~~~~~~~-~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~-~~~~y~~~v~a~n~~g~~~~ 394 (616)
+.+......++.+.|++|.... ..+...|.+.... ...........+...+..|. .+..|.+.|.+....|....
T Consensus 584 ~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~---elrq~l~~gs~tka~~E~ld~~a~s~~isvq~ltSrGsqd~ 660 (1335)
T KOG3632|consen 584 GAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLM---ELRQTLYAGSLTKAMQESLDNSAHSGYISVQRLTSRGSQDQ 660 (1335)
T ss_pred hhhhhhhccceeeeccCCCCCCccccceeeeeecch---hhhhhcccccchHHHHhhccccCCceeeehhhhhccCCCCc
Confidence 3444566788999999866532 3344455443211 11111111222222233332 24467777777777777654
Q ss_pred ccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCC
Q psy12426 395 LVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLK 474 (616)
Q Consensus 395 ~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 474 (616)
. ..........+..|.++++-.++..+..++|-+- +.+. -.+.|-... ...........|+|.+|.
T Consensus 661 l----rc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~-nsn~-----~Hviyln~e----E~~ps~a~~y~ytf~~lr 726 (1335)
T KOG3632|consen 661 L----RCILLVGGAAPVVPSQLRVWNATQTSAMITWVPF-NSNF-----LHVIYLNAE----EPRPSVAEMYNYTFMRLR 726 (1335)
T ss_pred c----eeeEeccccccccchhhhhhhhhchhhheeeeec-CCCc-----ceeeecCCc----cCCCchhhhhHHHHhccC
Confidence 2 2333334567788999999999999999999852 2221 122232222 112233446688999999
Q ss_pred CCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeee
Q psy12426 475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYID 554 (616)
Q Consensus 475 p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (616)
|++.|..+|-|.-.- .++|-.......++..+ - ..-....
T Consensus 727 pgt~y~a~vea~~p~-q~pwdl~~v~~etr~at--v-------------------------------------~f~tLpA 766 (1335)
T KOG3632|consen 727 PGTDYWASVEAALPR-QEPWDLRMVPMETRQAT--V-------------------------------------LFRTLPA 766 (1335)
T ss_pred CCCccceecccccCc-CCCcccccchhhhhccc--e-------------------------------------eeecccC
Confidence 999999999885441 22232222211111100 0 0000112
Q ss_pred cCCCCCCCCeE-EeecCCcEEEEeeCCCCC-----CCCceeeeEEEE
Q psy12426 555 NVPGKPSKPEA-TDVDKDHIKIKWQQPISN-----GGSAIKGYEVER 595 (616)
Q Consensus 555 ~~~~~P~~~~~-~~~~~~~i~l~W~~p~~~-----~~~~i~~Y~i~~ 595 (616)
.+|.+|-.+++ ...+...+.++|.||.-+ ++-.+++|.|+-
T Consensus 767 GppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavya 813 (1335)
T KOG3632|consen 767 GPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYA 813 (1335)
T ss_pred CCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeee
Confidence 34666666664 567889999999997622 356789999853
No 322
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=96.93 E-value=0.032 Score=57.53 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=85.8
Q ss_pred CCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCC
Q psy12426 354 TGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPP 433 (616)
Q Consensus 354 ~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p 433 (616)
+..|..........+.+.++.+| +|..+|+|.|..|....-..+....+..+..+|..+..+....+ .-.+.|.|-.|
T Consensus 648 ~~~~vta~rt~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~~~~l~v~dP 725 (952)
T COG4733 648 DGNWITAPRTSAAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TLVIRLVVGDP 725 (952)
T ss_pred CCceEecccccccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-EeeeeEEEecC
Confidence 34788888888889999999985 89999999999997655444556666655555555544444433 24578888765
Q ss_pred CCCCCCcceeEEEEEeeCCCCceEeEeecCCc--cEEEcCCCCCCCeEEEEEEEEcCCCCCCCCC
Q psy12426 434 KKDGGSPISQYIIEKKPKYGPWEKACIVPANI--TATSVPDLKEGEEYEFRVIAVNKGGPGEPSK 496 (616)
Q Consensus 434 ~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~--~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~ 496 (616)
. ....+..-.+++....+. ......-++. ....-.+|.++..|.|+++++|..|.+.+-+
T Consensus 726 t--~~~d~~~sei~~s~~~d~-~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~e 787 (952)
T COG4733 726 T--GAVDITSTEIRSAVIADG-NFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKWE 787 (952)
T ss_pred C--cceEEeeeeeeeeccccc-hhHHhhhhccccccccccCcCCCceEEEEeeecccccccccce
Confidence 3 222233333333332220 0000011111 1122268999999999999999999876443
No 323
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.92 E-value=0.0044 Score=48.50 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=46.6
Q ss_pred EEEcCCeEEEEEEEeeec-CceeEEEECCee--------e---c-----------ccCcEEEE--ecCCceEEEecCCCC
Q psy12426 227 KVRAGSNFEFDINVIGEP-IPTKEWLCNDIT--------I---I-----------SKDRFKIV--NDDKSTKLKVFDSKR 281 (616)
Q Consensus 227 ~v~~g~~~~l~c~~~~~p-~~~~~W~~~~~~--------~---~-----------~~~~~~~~--~~~~~~~l~i~~l~~ 281 (616)
.+..|++++|.|.+.+.. ...+.|++.... + . ...++.+. .......|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 467899999999987643 457999974321 0 0 01244332 234456799999999
Q ss_pred CCcEEEEEEEEc
Q psy12426 282 GDSGIYTLAVKN 293 (616)
Q Consensus 282 ~~~g~y~c~a~n 293 (616)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999864
No 324
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=96.92 E-value=0.003 Score=49.19 Aligned_cols=78 Identities=10% Similarity=0.024 Sum_probs=47.0
Q ss_pred CCeEEEEEEEeeec-------CCeeeeeeCC--eeeee-------ccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426 17 GTTLKFDANIIGEP-------VPHVDWRAGG--NPLNL-------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ 80 (616)
Q Consensus 17 g~~v~l~C~~~g~P-------~p~v~W~~~~--~~l~~-------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~ 80 (616)
|+.|+|.|...-.| .+.|.|.|.. ..+.. .|.+.- ..+.++++.-.. ..
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~-----~~~y~gRvsl~~----------~~ 66 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRV-----AKAFQGRVSLPG----------YP 66 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEE-----chhcccEEEeec----------CC
Confidence 78999999955333 3689999862 21221 222110 122333333211 01
Q ss_pred cCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKG 109 (616)
Q Consensus 81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~ 109 (616)
......+|.|.+|+..|.|.|+|......
T Consensus 67 ~~~~~asL~i~nv~~~D~G~Y~C~v~~g~ 95 (110)
T cd05902 67 KNRYNASLVLSRLRYSDSGTYRCEVVLGI 95 (110)
T ss_pred CCCceEEEEECCCCHHHCEEEEEEEEECC
Confidence 12346799999999999999999999644
No 325
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.91 E-value=0.0041 Score=48.30 Aligned_cols=66 Identities=18% Similarity=0.325 Sum_probs=47.1
Q ss_pred EEcCCeEEEEEEEeeecCceeEEEECCee-------ec---c------------cCcEEEEecCCceEEEecCCCCCCcE
Q psy12426 228 VRAGSNFEFDINVIGEPIPTKEWLCNDIT-------II---S------------KDRFKIVNDDKSTKLKVFDSKRGDSG 285 (616)
Q Consensus 228 v~~g~~~~l~c~~~~~p~~~~~W~~~~~~-------~~---~------------~~~~~~~~~~~~~~l~i~~l~~~~~g 285 (616)
+..|++++|.|.........+.|++.... +. . ..++..........|.|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 56899999999987665567899974321 10 0 12344333445678999999999999
Q ss_pred EEEEEEEc
Q psy12426 286 IYTLAVKN 293 (616)
Q Consensus 286 ~y~c~a~n 293 (616)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99999864
No 326
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.91 E-value=0.0029 Score=49.13 Aligned_cols=87 Identities=8% Similarity=0.036 Sum_probs=46.9
Q ss_pred EecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCcc-ceeeccccCCCCCceEec
Q psy12426 13 KLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHP-IWEKCAQTEGDTPKGKVL 91 (616)
Q Consensus 13 ~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p-~w~~~~~~~~~~~~l~i~ 91 (616)
.|.+|++|+|.|...+.-...+.|||....= .+...+.+...... ..........+ .+... .......|+|.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~--~~~~~~l~~~~~~~---~~~~~~~~~~~~rf~~~--~~~~~~~L~I~ 74 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGS--APQPTFLVYLSGSS---KITWDEEELSSKRFSGS--RSSNSFVLTLK 74 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCC--CCCCEEEEEEeCCC---CeeeccccCCCceEEEE--ecCCEEEEEEC
Confidence 4789999999999765545569999965210 01112222111000 00000000000 01000 01234579999
Q ss_pred CcccCCeEEEEEEEE
Q psy12426 92 DLIEGNQYEFRVLAV 106 (616)
Q Consensus 92 ~l~~~~~~~y~c~a~ 106 (616)
++++.|+|.|.|...
T Consensus 75 ~~~~sDsgtY~Ca~~ 89 (104)
T cd05720 75 NFQKENEGYYFCSVA 89 (104)
T ss_pred CCCHHHCEEEEEEEc
Confidence 999999999999876
No 327
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=96.89 E-value=0.015 Score=44.29 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=30.6
Q ss_pred ceEEEecCCCCCCcEEEEEEEEc-CCCCceeeEEEEE
Q psy12426 271 STKLKVFDSKRGDSGIYTLAVKN-SWGTDKGTAKVTV 306 (616)
Q Consensus 271 ~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~~~~~l~v 306 (616)
..+|.|.+++..|.|.|+|.+.+ ..|..+....|+|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 46999999999999999999999 6777677766665
No 328
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.86 E-value=0.012 Score=42.63 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=41.1
Q ss_pred EEEEEEEeee-cCceeEEEECCeeecccCcEEEEecC---CceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426 234 FEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSW 295 (616)
Q Consensus 234 ~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~ 295 (616)
+.|.|.+.|. |.+.|+|++++..+............ ..+.|.|..-..+|.-.|+|.|.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 5789999866 77799999999988654221111111 23466665555456669999999854
No 329
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.85 E-value=0.0052 Score=46.91 Aligned_cols=68 Identities=25% Similarity=0.213 Sum_probs=46.2
Q ss_pred EcCCeEEEEEEEeee-c-CceeEEEECCeeecccCc-EEEEe--cCC---ceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426 229 RAGSNFEFDINVIGE-P-IPTKEWLCNDITIISKDR-FKIVN--DDK---STKLKVFDSKRGDSGIYTLAVKNSWG 296 (616)
Q Consensus 229 ~~g~~~~l~c~~~~~-p-~~~~~W~~~~~~~~~~~~-~~~~~--~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g 296 (616)
..|..+.|.|.+.+. | .+.+.|++++..+..... ..... ++. .+.|.+......+.+.|+|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 357899999999998 5 368999999988765432 11211 111 13455555555589999999988643
No 330
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=96.85 E-value=0.0041 Score=47.81 Aligned_cols=77 Identities=10% Similarity=0.049 Sum_probs=43.6
Q ss_pred CeEEEEEEEeeec---CCeeeeeeCCeeeeeccceEEEeecC---CCCCceeEeeeccCCccceeeccccCCCCCceEec
Q psy12426 18 TTLKFDANIIGEP---VPHVDWRAGGNPLNLRPIWEKCAQTE---GDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL 91 (616)
Q Consensus 18 ~~v~l~C~~~g~P---~p~v~W~~~~~~l~~~G~Y~C~a~n~---~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~ 91 (616)
++|+|.|...+.+ ...|.|+|....-. .-.+....... .....+++.-. . ......+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~-~~i~~~~~~~~~~~~~~~~~R~~~~----------~--~~~~~~sL~I~ 67 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSK-QNIAVFHPQYGISIPPSYEGRVSFL----------N--SSLEDATISIS 67 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCC-EEEEEEecCCCcccCcCcCceEEEe----------C--CCCCceEEEEc
Confidence 5799999977654 44799999764200 00011110000 00011222110 0 01146789999
Q ss_pred CcccCCeEEEEEEEEc
Q psy12426 92 DLIEGNQYEFRVLAVN 107 (616)
Q Consensus 92 ~l~~~~~~~y~c~a~n 107 (616)
+++..|+|.|.|.+.+
T Consensus 68 ~v~~~D~G~Y~C~v~~ 83 (98)
T cd05718 68 NLRLEDEGNYICEFAT 83 (98)
T ss_pred cCCcccCEEEEEEEEe
Confidence 9999999999999874
No 331
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.84 E-value=0.4 Score=44.42 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=66.7
Q ss_pred eEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE-E------ecCCCCCCCCcccee----ecCCeEEEEEeCCCCCCCC
Q psy12426 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT-V------LDIPSPPEGPLKPSN----ITKSSCNLEWRAPRDDGGT 340 (616)
Q Consensus 272 ~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~-v------~~~p~~p~~~~~~~~----~~~~~~~l~W~~~~~~~~~ 340 (616)
..+.+.++.+...|..++.+.|.... .....+. . ...|..|.+ ..+.. .+-++++|.|.+..+.
T Consensus 128 ~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d-~~Ik~f~~lrtC~SvTIAW~~s~d~--- 202 (300)
T PF10179_consen 128 RHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDD-TSIKEFNKLRTCNSVTIAWLGSPDR--- 202 (300)
T ss_pred EEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCC-CceeEEcCCcccceEEEEEecCCCC---
Confidence 47889999999999888877764332 2223333 2 123445555 33332 3347899999964432
Q ss_pred ceEEEEEEEEeCCCC----------------------CEEEcc--cc------c---cceEEeccccCCCeEEEEEEEEe
Q psy12426 341 DILHYVVEKMDMETG----------------------RWVPMG--DV------S---GTYTRAENLIEGHDYNFRVKAVN 387 (616)
Q Consensus 341 ~i~~y~v~~~~~~~~----------------------~~~~~~--~~------~---~~~~~i~~L~~~~~y~~~v~a~n 387 (616)
. ..|.|..+..... ++..+. .. . -...+|.+|.||+.|.|.|.+.-
T Consensus 203 ~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~ 281 (300)
T PF10179_consen 203 S-IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNG 281 (300)
T ss_pred C-ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEec
Confidence 2 4566655432211 112221 00 1 12357899999999999999875
Q ss_pred cCcC
Q psy12426 388 KIGE 391 (616)
Q Consensus 388 ~~g~ 391 (616)
..|.
T Consensus 282 ~~G~ 285 (300)
T PF10179_consen 282 PSGQ 285 (300)
T ss_pred CCCc
Confidence 5554
No 332
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.83 E-value=0.007 Score=46.63 Aligned_cols=83 Identities=4% Similarity=-0.078 Sum_probs=51.7
Q ss_pred CCCceEecCCCeEEEEEEEeeecCC---eeeeeeCCee-eeeccceEEEeecCCCC----CceeEeeeccCCccceeecc
Q psy12426 8 HLGDIKLSAGTTLKFDANIIGEPVP---HVDWRAGGNP-LNLRPIWEKCAQTEGDT----PKGKVLDLIEGNHPIWEKCA 79 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~~~~-l~~~G~Y~C~a~n~~~~----~~~~v~~~~~~~~p~w~~~~ 79 (616)
.+....+..|+.|+|+|.++|.-.. .++|+|...- +. -|-..+..+. .+++.+. .+
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE-----~c~~~~~~g~~~~~~~~r~tc-----------s~ 67 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVE-----VCAVTGNMSNQLQTSLDGFNC-----------DG 67 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcE-----EEEEEeCCCccccccCCCeEE-----------eE
Confidence 4677889999999999999875554 4889986432 21 1222111111 0111110 01
Q ss_pred ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426 80 QTEGDTPKGKVLDLIEGNQYEFRVLAV 106 (616)
Q Consensus 80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~ 106 (616)
....+.-.|.+.+|+..|...|.|.-.
T Consensus 68 ~~s~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 68 TLGNEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred eCCCCEEEEEEcCCCHHHCeEEEEEee
Confidence 113345689999999999999999864
No 333
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=96.81 E-value=0.018 Score=42.37 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=41.3
Q ss_pred EEEEEEEeee-cCceeEEEECCeeecccCcEEEEecCCc------eEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426 234 FEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKS------TKLKVFDSKRGDSGIYTLAVKNSWG 296 (616)
Q Consensus 234 ~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~l~i~~l~~~~~g~y~c~a~n~~g 296 (616)
+.|.|.+.+. |.+.|+|++++..+..... .+...+.. +.|.+......+...|+|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 5789999876 8889999999988764432 22222221 2344444445566799999988643
No 334
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=96.79 E-value=0.0045 Score=47.40 Aligned_cols=25 Identities=0% Similarity=0.013 Sum_probs=21.9
Q ss_pred CCCCceEecCcccCCeEEEEEEEEc
Q psy12426 83 GDTPKGKVLDLIEGNQYEFRVLAVN 107 (616)
Q Consensus 83 ~~~~~l~i~~l~~~~~~~y~c~a~n 107 (616)
....+|+|.+++..|+|.|.|....
T Consensus 58 ~~~~sL~I~nv~~~D~G~Y~C~~~~ 82 (97)
T cd05846 58 LNSTSITIWNVTLEDEGCYKCIFNT 82 (97)
T ss_pred CCccEEEEeCCceeeeEEEEEEEEe
Confidence 3467899999999999999999763
No 335
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.77 E-value=0.017 Score=41.94 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=46.7
Q ss_pred ceEEEcCCeEEEEEEEeeecCc--eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426 225 DIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 225 ~~~v~~g~~~~l~c~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
+..+..|++++|.|.....+.| .++|...+.... .....+..+|.+..+...|+|.++|.+...
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK------QILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc------eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 3457789999999999664444 999987554311 111233458999999999999999999754
No 336
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.74 E-value=0.0012 Score=44.57 Aligned_cols=38 Identities=16% Similarity=0.367 Sum_probs=28.1
Q ss_pred cCCCeEEEEEEEeeecCCeeeeeeCCeeee-------------eccceEEEeec
Q psy12426 15 SAGTTLKFDANIIGEPVPHVDWRAGGNPLN-------------LRPIWEKCAQT 55 (616)
Q Consensus 15 ~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~-------------~~G~Y~C~a~n 55 (616)
..|.+|+|+|...+. .|+|+++++.+. .+|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~~~~~~~~~e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDEKYLSLNHFSSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCCceEEeeccCCCCceEEEEeCC
Confidence 458999999964322 299999975543 19999999855
No 337
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.73 E-value=0.0071 Score=45.65 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=23.9
Q ss_pred cCCCeEEEEEEEee-ecC-CeeeeeeCCeeee
Q psy12426 15 SAGTTLKFDANIIG-EPV-PHVDWRAGGNPLN 44 (616)
Q Consensus 15 ~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~l~ 44 (616)
..++.++|.|.|.| .|. ..|+|+|||+.+.
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~ 43 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVAT 43 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECc
Confidence 35577999999998 565 4689999998864
No 338
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=96.70 E-value=0.014 Score=42.92 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=39.6
Q ss_pred EEEEEEEeee-cCceeEEEECCeeecccCcEEEEecCC----ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426 234 FEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 234 ~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~ 297 (616)
+.|.|.+.+. |.+.+.|++++..+...........+. .+.|.+..-..++...|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 5789999775 888999999998875332111111111 123444333334557999999986543
No 339
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.65 E-value=2.6 Score=51.10 Aligned_cols=189 Identities=11% Similarity=-0.049 Sum_probs=99.4
Q ss_pred EecCcccCCeEEEEEEEEcCCCCCCCCCCCCcce-------------eecCCCceee--eecCcccccEEEEeeccCccc
Q psy12426 89 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI-------------ARAKKGKCYH--LVGTLLKDSIYEQLKRSGLFD 153 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~-------------~~~~~p~~~~--~~g~p~~~~~~~~~~~~~~~~ 153 (616)
.+.-..+ ..|.++..|.|..|....+....... +....+..+. ..++....|+|.. .+|
T Consensus 1663 ~vt~~~p-G~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~--gdG--- 1736 (2740)
T TIGR00864 1663 KLNPLEA-GPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFL--EEG--- 1736 (2740)
T ss_pred EEecCCC-ceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEE--CCC---
Confidence 3333334 47888999999999876552111110 0001112222 1255566788888 422
Q ss_pred ccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcc-eEEEcCC
Q psy12426 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD-IKVRAGS 232 (616)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~-~~v~~g~ 232 (616)
..|... . ...-........|.+++.|.|..|.... ...+.+........|....+.. ..+..|.
T Consensus 1737 -----~s~~~s----~---p~~tHtf~~~G~y~VtVta~N~vss~~~---s~~V~VqepV~GL~i~~~~~~~~~~~~ag~ 1801 (2740)
T TIGR00864 1737 -----DDLETS----E---PFMSHSFPSAGLHLVTMKAFNELGSANA---SEEVDVQEPISGLKIRAADAGEQNFFAADS 1801 (2740)
T ss_pred -----CCcccC----C---CceEEEccCCceEEEEEEEEccccccce---eEEEEEEeccccceEecCCCCcccceecCc
Confidence 112110 1 1112223345667888899999886543 2345544444444443222222 2456677
Q ss_pred eEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy12426 233 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310 (616)
Q Consensus 233 ~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p 310 (616)
.+.|.-.++......+.|..++..-..+. ...++.... -.|.+++.|.|..+....+..+.++++.
T Consensus 1802 ~v~F~a~vstGsnVsw~W~f~~g~s~~gk---------~v~~Tf~~a---G~ytV~L~AsN~vs~~~~s~~~~VQe~I 1867 (2740)
T TIGR00864 1802 SVCFQGELATGTNVSWCWAIDGGSSKMGK---------HACMTFPDA---GTFAIRLNASNAVSGKSASREFFAEEPI 1867 (2740)
T ss_pred EEEEEEEccCCCeeEEEEEeCCCCccccc---------eeEEecCCC---eEEEEEEEEEcccCcceeeeeEEEEEec
Confidence 77777665555556788887654311111 112222211 2345567888988888888888887654
No 340
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.64 E-value=0.0079 Score=45.18 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=31.1
Q ss_pred CccCCCCCCceEecCCCeEEE-EEE-EeeecCCeeeeeeCC
Q psy12426 2 PHIDRRHLGDIKLSAGTTLKF-DAN-IIGEPVPHVDWRAGG 40 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g~~v~l-~C~-~~g~P~p~v~W~~~~ 40 (616)
|+..+.+-....+.+|+.+.+ .|. +.|.|+++|+|+.+.
T Consensus 1 p~~~~~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~ 41 (97)
T cd07704 1 PLVSLSPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNV 41 (97)
T ss_pred CccccCCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence 444445455677889999999 998 789999999999874
No 341
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.63 E-value=0.0072 Score=44.64 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=24.3
Q ss_pred cCCCeEEEEEEEee-ecCC-eeeeeeCCeeee
Q psy12426 15 SAGTTLKFDANIIG-EPVP-HVDWRAGGNPLN 44 (616)
Q Consensus 15 ~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~l~ 44 (616)
..++.+.|.|.|.| .|.. .|+|+++|+.+.
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~ 37 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVT 37 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEET
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceee
Confidence 34899999999998 5544 599999999765
No 342
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.61 E-value=0.0077 Score=45.21 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=24.3
Q ss_pred ecCCCeEEEEEEEee-ecC-CeeeeeeCCeeee
Q psy12426 14 LSAGTTLKFDANIIG-EPV-PHVDWRAGGNPLN 44 (616)
Q Consensus 14 v~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~l~ 44 (616)
+..|+..+|.|.|.| .|. ..|+|.|||+.+.
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 345778899999999 554 3589999999864
No 343
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.58 E-value=0.016 Score=42.54 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=40.2
Q ss_pred EEEEEEEee-ecCceeEEEECCeeecccCcEEEEecCC-----ceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426 234 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSW 295 (616)
Q Consensus 234 ~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~l~~~~~g~y~c~a~n~~ 295 (616)
+.|.|.+.+ .|.+.++|++++..+............+ .+.|.+..-...+...|+|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 578999987 5778999999999875433222222111 2345555444556678999998753
No 344
>PHA03376 BARF1; Provisional
Probab=96.58 E-value=0.018 Score=48.05 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=51.9
Q ss_pred ceEEEcCCeEEEEEEEe---eecCceeEEEECC----eeec-------------ccCcEEEEecCCceEEEecCCCCCCc
Q psy12426 225 DIKVRAGSNFEFDINVI---GEPIPTKEWLCND----ITII-------------SKDRFKIVNDDKSTKLKVFDSKRGDS 284 (616)
Q Consensus 225 ~~~v~~g~~~~l~c~~~---~~p~~~~~W~~~~----~~~~-------------~~~~~~~~~~~~~~~l~i~~l~~~~~ 284 (616)
.+....|+.+.|+|... .....+++|+|.+ ..+. ...++.+....+..+|.|.++...|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 35567899999999876 2245589999942 2211 11334444456778999999999999
Q ss_pred EEEEEEEEcCCCCc
Q psy12426 285 GIYTLAVKNSWGTD 298 (616)
Q Consensus 285 g~y~c~a~n~~g~~ 298 (616)
|.|+|.........
T Consensus 100 GtY~C~fQkge~~~ 113 (221)
T PHA03376 100 GNYLCRMKLGETEV 113 (221)
T ss_pred ceEEEEEEcCCCce
Confidence 99999998754333
No 345
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.56 E-value=0.0088 Score=45.06 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.1
Q ss_pred cCCCeEEEEEEEee-ecC-CeeeeeeCCeeee
Q psy12426 15 SAGTTLKFDANIIG-EPV-PHVDWRAGGNPLN 44 (616)
Q Consensus 15 ~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~l~ 44 (616)
..|+.++|.|.|.| .|. ..|+|.|||+.+.
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~ 44 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVT 44 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEcc
Confidence 44677899999999 664 4589999999875
No 346
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=96.54 E-value=0.015 Score=44.70 Aligned_cols=27 Identities=4% Similarity=0.175 Sum_probs=23.4
Q ss_pred CCCceEecCcccCCeEEEEEEEEc-CCC
Q psy12426 84 DTPKGKVLDLIEGNQYEFRVLAVN-KGG 110 (616)
Q Consensus 84 ~~~~l~i~~l~~~~~~~y~c~a~n-~~g 110 (616)
...+|.|.+++..|+|.|.|...+ ..|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g 89 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAG 89 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCC
Confidence 467899999999999999999987 444
No 347
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.53 E-value=0.0099 Score=44.90 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=27.9
Q ss_pred CCCceEecCCCeEEEEEEEee-ecC-CeeeeeeCCeeee
Q psy12426 8 HLGDIKLSAGTTLKFDANIIG-EPV-PHVDWRAGGNPLN 44 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~l~ 44 (616)
.|....+..+..++|.|.|.| .|. ..|+|.|||+.+.
T Consensus 7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 455555556788999999998 554 3589999999865
No 348
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.50 E-value=0.013 Score=45.70 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=56.5
Q ss_pred CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeE-eecCCccEEEcCCCC--CCCeEEEEE
Q psy12426 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKAC-IVPANITATSVPDLK--EGEEYEFRV 483 (616)
Q Consensus 408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~-~~~~~~~~~~l~~L~--p~t~Y~~~v 483 (616)
....+|.++++...+ -...|.|+++.. ...-..|.|+|+..++ .|.... -.......+.|++.. +...|.+||
T Consensus 20 ~~lp~P~nv~~~s~n-f~~iL~W~~~~~--~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV 96 (107)
T PF01108_consen 20 ASLPAPQNVTVDSVN-FKHILRWDPGPG--SPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV 96 (107)
T ss_dssp SSGSSCEEEEEEEET-TEEEEEEEESTT--SSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred ccCCCCCeeEEEEEC-CceEEEeCCCCC--CCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence 345678888888764 458999997433 2245679999994443 888761 122235677777644 788999999
Q ss_pred EEEcCCCCCC
Q psy12426 484 IAVNKGGPGE 493 (616)
Q Consensus 484 ~a~n~~G~g~ 493 (616)
+|..+...|+
T Consensus 97 ~A~~~~~~S~ 106 (107)
T PF01108_consen 97 RAEVGNQTSD 106 (107)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCccCC
Confidence 9987765443
No 349
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.45 E-value=0.0093 Score=45.22 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=26.9
Q ss_pred CCCceEecCCCeEEEEEEEeee--cC-CeeeeeeCCee
Q psy12426 8 HLGDIKLSAGTTLKFDANIIGE--PV-PHVDWRAGGNP 42 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~g~--P~-p~v~W~~~~~~ 42 (616)
+|....+..|+.++|.|.+.|. |. ..|+|.||++.
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 4555557779999999999998 44 35899999753
No 350
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=96.45 E-value=0.017 Score=45.12 Aligned_cols=30 Identities=7% Similarity=0.037 Sum_probs=25.3
Q ss_pred CCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426 84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGE 113 (616)
Q Consensus 84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~ 113 (616)
...+|.|.+|+..|.|.|+|...+.....+
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~ 106 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQ 106 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccE
Confidence 467999999999999999999987665443
No 351
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.39 E-value=0.02 Score=45.56 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=48.3
Q ss_pred cceEEEcCCeEEEEEEEeeec--CceeEEEECC--ee---e---c-----------ccCcEEEEecC--CceEEEecCCC
Q psy12426 224 SDIKVRAGSNFEFDINVIGEP--IPTKEWLCND--IT---I---I-----------SKDRFKIVNDD--KSTKLKVFDSK 280 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p--~~~~~W~~~~--~~---~---~-----------~~~~~~~~~~~--~~~~l~i~~l~ 280 (616)
....+..|++++|.|...+.. ...+.|++-. .. + . ...++...... ....|.|.+++
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 456788999999999876543 4568898732 11 1 0 01344444332 33579999999
Q ss_pred CCCcEEEEEEEEc
Q psy12426 281 RGDSGIYTLAVKN 293 (616)
Q Consensus 281 ~~~~g~y~c~a~n 293 (616)
.+|++.|.|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999998865
No 352
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.38 E-value=0.016 Score=40.87 Aligned_cols=61 Identities=28% Similarity=0.293 Sum_probs=44.8
Q ss_pred EEEEEEeeecCceeEEEECCeeecccCcE----EEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426 235 EFDINVIGEPIPTKEWLCNDITIISKDRF----KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 295 (616)
Q Consensus 235 ~l~c~~~~~p~~~~~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~ 295 (616)
.|.|.+.+.+...+.|.+.+......... ..........|.|.++...|.|.|.|.+.+..
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 58899998778899999988765432211 11122335689999999999999999998764
No 353
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.34 E-value=0.007 Score=45.76 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=31.3
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEee-e-cC-CeeeeeeCCee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIG-E-PV-PHVDWRAGGNP 42 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~-P~-p~v~W~~~~~~ 42 (616)
+|.+..-+|....+..++.++|.|.+.| . |. -.|+|.++|+.
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 3666555566565667899999999998 4 53 46999999874
No 354
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.30 E-value=0.021 Score=43.30 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=45.4
Q ss_pred EEEcCCeEEEEEEEeee-cCce--eEEEECCeeecccCcEEE--EecCCceEEEecCCCCCCcE-EEEEEEEcCCCC
Q psy12426 227 KVRAGSNFEFDINVIGE-PIPT--KEWLCNDITIISKDRFKI--VNDDKSTKLKVFDSKRGDSG-IYTLAVKNSWGT 297 (616)
Q Consensus 227 ~v~~g~~~~l~c~~~~~-p~~~--~~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~l~~~~~g-~y~c~a~n~~g~ 297 (616)
.+.+|+.++|.|.+.+. |.+. +.|++++..+........ .......++.+. ..+.|.| .|+|.|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 35789999999999875 5555 799999988854211110 001122356555 4455555 999999986553
No 355
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.25 E-value=0.011 Score=43.48 Aligned_cols=22 Identities=5% Similarity=-0.037 Sum_probs=19.2
Q ss_pred CCCCceEecCcccCCeEEEEEE
Q psy12426 83 GDTPKGKVLDLIEGNQYEFRVL 104 (616)
Q Consensus 83 ~~~~~l~i~~l~~~~~~~y~c~ 104 (616)
....+|.|.+++++|+|.|.|.
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEc
Confidence 3456899999999999999996
No 356
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.20 E-value=0.0057 Score=41.66 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=25.0
Q ss_pred CCeEEEEEEEeeecCCeeeeeeCCeee-------e-------eccceEEEeec
Q psy12426 17 GTTLKFDANIIGEPVPHVDWRAGGNPL-------N-------LRPIWEKCAQT 55 (616)
Q Consensus 17 g~~v~l~C~~~g~P~p~v~W~~~~~~l-------~-------~~G~Y~C~a~n 55 (616)
...|.|+|.+ ...|+|+++.... . ..|.|+|.+++
T Consensus 6 ~~~V~L~C~~----~tsi~W~kG~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKKGKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEecCcccccccccEEeccCcccCCCcceEecCcc
Confidence 3589999965 2469999944211 1 19999999877
No 357
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=96.19 E-value=0.011 Score=46.15 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=46.9
Q ss_pred CEEEEecCCeEEEEecCCCCC---CCC--------cceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426 416 PTVTDWGKDHVDLEWTPPKKD---GGS--------PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484 (616)
Q Consensus 416 ~~~~~~~~~~v~l~W~~p~~~---~~~--------~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~ 484 (616)
+.+ ....+.+.|.+.+|... ++. .-..|.|.|++.++. ............+.|.+|.|++.|-|+|+
T Consensus 8 v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~l~~L~p~t~YCv~V~ 85 (106)
T PF09294_consen 8 VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN-EKKKEIETKNSSVTLSDLKPGTNYCVSVQ 85 (106)
T ss_dssp EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS-CEEEEEESSSEEEEEES--TTSEEEEEEE
T ss_pred EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc-cceEEEeecCCEEEEeCCCCCCCEEEEEE
Confidence 666 56788999999987510 111 124699999888764 23334445577889999999999999999
Q ss_pred EE
Q psy12426 485 AV 486 (616)
Q Consensus 485 a~ 486 (616)
|.
T Consensus 86 ~~ 87 (106)
T PF09294_consen 86 AF 87 (106)
T ss_dssp EE
T ss_pred EE
Confidence 93
No 358
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.17 E-value=0.019 Score=43.41 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=25.5
Q ss_pred CccCCCCCCceEecCCCeEEEEEEE-eeecCCeeeeeeC
Q psy12426 2 PHIDRRHLGDIKLSAGTTLKFDANI-IGEPVPHVDWRAG 39 (616)
Q Consensus 2 P~i~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~ 39 (616)
|+...+ +.....-..+...+.|.+ .|+|.+.|+|+++
T Consensus 1 p~~~~~-~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 1 PKNSAE-AGPVALGGEPVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred CCcccc-eeccccCCCccEEEEEECCCCcCCCEEEEEeC
Confidence 444433 223333334778899995 7999999999997
No 359
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.08 E-value=0.021 Score=40.22 Aligned_cols=66 Identities=15% Similarity=0.306 Sum_probs=44.4
Q ss_pred EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426 20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY 99 (616)
Q Consensus 20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~ 99 (616)
+.|.|.+.+.+.+.+.|++++........ . ... ...........+.|.++...+.|
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~-~~~----------------------~~~~~~~~~~~l~i~~~~~~d~g 56 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVL-T-RVR----------------------SSRGTSSGSSTLTISNVTLEDSG 56 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCccc-E-Eec----------------------cccCcceeEEEEEECccCcccCc
Confidence 57999998888889999999875542111 0 000 00000222457889999999999
Q ss_pred EEEEEEEcCC
Q psy12426 100 EFRVLAVNKG 109 (616)
Q Consensus 100 ~y~c~a~n~~ 109 (616)
.|.|.+.+..
T Consensus 57 ~y~C~~~~~~ 66 (74)
T cd00096 57 TYTCVASNSA 66 (74)
T ss_pred EEEEEEecCc
Confidence 9999998655
No 360
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=96.03 E-value=0.038 Score=42.18 Aligned_cols=28 Identities=7% Similarity=-0.119 Sum_probs=24.4
Q ss_pred CCCCceEecCcccCCeEEEEEEEEc-CCC
Q psy12426 83 GDTPKGKVLDLIEGNQYEFRVLAVN-KGG 110 (616)
Q Consensus 83 ~~~~~l~i~~l~~~~~~~y~c~a~n-~~g 110 (616)
..+.+|.|.+|+..|+|.|.|...| ..|
T Consensus 60 ~~daSi~i~nl~~~D~G~Y~C~v~t~P~g 88 (99)
T cd05886 60 FEDGTISLSRLELEDEGVYICEFATFPTG 88 (99)
T ss_pred CCcceEEEcCCccccCEEEEEEEEeCCCC
Confidence 3568999999999999999999998 454
No 361
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.00 E-value=0.095 Score=39.64 Aligned_cols=70 Identities=13% Similarity=0.220 Sum_probs=43.5
Q ss_pred eEEEEEEEeee-cCceeEEEECCe----ee-----------cc--cCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 233 NFEFDINVIGE-PIPTKEWLCNDI----TI-----------IS--KDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 233 ~~~l~c~~~~~-p~~~~~W~~~~~----~~-----------~~--~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
.++|.|..... ....+.|.+... .+ .. ..|..... .....++.|.++..+|.|.|+|....
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t 81 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT 81 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence 56788887643 344778887432 11 00 12333321 12356999999999999999999987
Q ss_pred -CCCCceeeE
Q psy12426 294 -SWGTDKGTA 302 (616)
Q Consensus 294 -~~g~~~~~~ 302 (616)
..|...+..
T Consensus 82 ~P~g~~~~~i 91 (96)
T cd05889 82 YPQGSWEKVI 91 (96)
T ss_pred CCCCCeEEEE
Confidence 455554443
No 362
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.95 E-value=0.03 Score=42.22 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=24.0
Q ss_pred CceEecCC--CeEEEEEE-EeeecCCeeeeeeC
Q psy12426 10 GDIKLSAG--TTLKFDAN-IIGEPVPHVDWRAG 39 (616)
Q Consensus 10 ~~~~v~~g--~~v~l~C~-~~g~P~p~v~W~~~ 39 (616)
+.+.|..| ..+.++|. +.|.|++.|+|+++
T Consensus 6 ~~~~~~~~~~~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 6 EAVEVSAGTIPVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred eEEEeecCCCccEEEEEEcCCCCCCcEEEEEcC
Confidence 34555556 67899998 66899999999998
No 363
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=95.92 E-value=0.039 Score=41.71 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=44.0
Q ss_pred CeEEEEEEEe-eecCCeeeeeeCCeeeeeccceEEEeecC---CCCCceeEeeeccCCccceeeccccCCCCCceEecCc
Q psy12426 18 TTLKFDANII-GEPVPHVDWRAGGNPLNLRPIWEKCAQTE---GDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDL 93 (616)
Q Consensus 18 ~~v~l~C~~~-g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~---~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l 93 (616)
+.++|.|... ....++|+|.|-... ...-.+.|.-... .+.-+++|.-. . ....+.+|.|.+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~-~~~~iavy~~~~g~~~~~~y~~Rv~f~---------~---~~~~d~sI~i~nv 67 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGS-HKENIAVYHPIYGMHIEDKYRGRVYFL---------N---STREDMSLSFNNA 67 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCC-CCceEEEEECCCCCEECccccCeEEEe---------c---CCCCccEEEEcCC
Confidence 4689999853 234567999986431 0012233321100 00112233311 0 0124689999999
Q ss_pred ccCCeEEEEEEEEc
Q psy12426 94 IEGNQYEFRVLAVN 107 (616)
Q Consensus 94 ~~~~~~~y~c~a~n 107 (616)
+..|+|.|.|...+
T Consensus 68 t~~D~G~Y~C~~~t 81 (96)
T cd05889 68 TEEDVGLYCCSLVT 81 (96)
T ss_pred CcccCEEEEEEEEe
Confidence 99999999999874
No 364
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=95.71 E-value=0.17 Score=39.62 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=39.2
Q ss_pred EEEcCCeEEEEEEEeee-cC-ceeEEEECCeeecccCcEEEEecCC------ceEEEecCCCCCCcE-EEEEEEEcC
Q psy12426 227 KVRAGSNFEFDINVIGE-PI-PTKEWLCNDITIISKDRFKIVNDDK------STKLKVFDSKRGDSG-IYTLAVKNS 294 (616)
Q Consensus 227 ~v~~g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~------~~~l~i~~l~~~~~g-~y~c~a~n~ 294 (616)
....|+.++|.|.+.+- |. ..++|++||..+..... .....++ .+.|.+. ....|.+ .|+|.+...
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHR 91 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeC
Confidence 34467789999999885 43 58999999998754321 1111111 1223333 2333433 488988764
No 365
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.69 E-value=0.089 Score=39.79 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=37.1
Q ss_pred CCeEEEEEEEeee-cCc-eeEEEECCeeecccC---cEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426 231 GSNFEFDINVIGE-PIP-TKEWLCNDITIISKD---RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 231 g~~~~l~c~~~~~-p~~-~~~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
++.+.|.|.+.|- |.. .+.|.+++..+.... ......++.-.......+...+...|+|.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeC
Confidence 6689999999995 543 899999986432221 111111111111222333344678899998764
No 366
>smart00406 IGv Immunoglobulin V-Type.
Probab=95.65 E-value=0.048 Score=39.88 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=37.6
Q ss_pred EEEEEEEeeecCc--eeEEEECCe--e---ec-------------ccCcEEEEec--CCceEEEecCCCCCCcEEEEEE
Q psy12426 234 FEFDINVIGEPIP--TKEWLCNDI--T---II-------------SKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLA 290 (616)
Q Consensus 234 ~~l~c~~~~~p~~--~~~W~~~~~--~---~~-------------~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~ 290 (616)
+.|.|.+...... .+.|++... . +. ...|+.+... ....+|.|.+++.+|+|.|.|.
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 5678877765543 678877431 0 10 1234444433 4567899999999999999996
No 367
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=95.61 E-value=0.038 Score=41.75 Aligned_cols=29 Identities=10% Similarity=-0.191 Sum_probs=23.6
Q ss_pred CCCCceEecCcccCCeEEEEEEEEc-CCCC
Q psy12426 83 GDTPKGKVLDLIEGNQYEFRVLAVN-KGGP 111 (616)
Q Consensus 83 ~~~~~l~i~~l~~~~~~~y~c~a~n-~~g~ 111 (616)
..+.+|.|.+|+..|.|.|+|...+ ..|.
T Consensus 57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~ 86 (96)
T cd05887 57 LLDATIMLENVGFSDIGVYICKAVTFPLGN 86 (96)
T ss_pred CCccEEEEeCCCccccEEEEEEEEeCCCCC
Confidence 3468999999999999999999764 3443
No 368
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=95.60 E-value=0.056 Score=39.30 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=44.0
Q ss_pred ceEecCCCeEEEEEEEee--ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426 11 DIKLSAGTTLKFDANIIG--EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG 88 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g--~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l 88 (616)
+-.+..|++++|+|.+.. .|.+.|+|.--+.... .. .......|
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-------~~---------------------------~~~~~ktL 53 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-------QI---------------------------LNQDKKTL 53 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-------ee---------------------------ccCCccEE
Confidence 446889999999999754 4455999987655322 00 01224577
Q ss_pred EecCcccCCeEEEEEEEE
Q psy12426 89 KVLDLIEGNQYEFRVLAV 106 (616)
Q Consensus 89 ~i~~l~~~~~~~y~c~a~ 106 (616)
.+..|...|+|...|...
T Consensus 54 ~~~qv~~qdSG~WtC~V~ 71 (88)
T cd07694 54 NLVQLGPNDSGTWDCIVS 71 (88)
T ss_pred EeceeCcccCCEEEEEEE
Confidence 788888999999999886
No 369
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.45 E-value=0.039 Score=37.46 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=35.1
Q ss_pred EcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 229 RAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 229 ~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
..|.+|+|+|..... .+.|.+++..+.... ..+.+.+-. ++.|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~----------~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD----------EKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCC----------ceEEeeccC-CCCceEEEEeCC
Confidence 468899999975432 399999986554321 134444555 789999999954
No 370
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.40 E-value=0.053 Score=41.02 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEee-ecC-CeeeeeeCCee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIG-EPV-PHVDWRAGGNP 42 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~ 42 (616)
||.+++-.+-.-.. .++.++|.|.|.| .|. -.|+|.|||+.
T Consensus 1 ~P~v~~l~~~~~~~-~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 1 APTVFPLVPCCSSS-SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCeEEEeCCCcccc-CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 56676555544443 4667999999998 554 35899999997
No 371
>KOG4367|consensus
Probab=95.21 E-value=0.019 Score=53.89 Aligned_cols=73 Identities=27% Similarity=0.294 Sum_probs=64.3
Q ss_pred ecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCc
Q psy12426 322 ITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPL 395 (616)
Q Consensus 322 ~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~ 395 (616)
...+++++.|+.|... +.+..+|.++..+.+++++..+.....+-+++.+|--.+.|.-||.+.|..|.++++
T Consensus 450 t~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys 522 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYS 522 (699)
T ss_pred ccCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeEEEecCceeEEecceecchhHHHHHHHhhccCCCccc
Confidence 3467899999966553 568899999999988899999988888999999999999999999999999999885
No 372
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=94.84 E-value=0.082 Score=40.54 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=24.3
Q ss_pred EEcCCeEEEEEEEeee-c-CceeEEEECCeeec
Q psy12426 228 VRAGSNFEFDINVIGE-P-IPTKEWLCNDITII 258 (616)
Q Consensus 228 v~~g~~~~l~c~~~~~-p-~~~~~W~~~~~~~~ 258 (616)
...++.+.|.|.+.+- | ...+.|++||..+.
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 3346678999999985 4 45899999999874
No 373
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=94.77 E-value=0.26 Score=35.35 Aligned_cols=61 Identities=26% Similarity=0.229 Sum_probs=36.8
Q ss_pred EEEEEEEeee-cC-ceeEEEECCeeecccCcE-EEE--ecCC---ceEEEecCCCCCCcEEEEEEEEcC
Q psy12426 234 FEFDINVIGE-PI-PTKEWLCNDITIISKDRF-KIV--NDDK---STKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 234 ~~l~c~~~~~-p~-~~~~W~~~~~~~~~~~~~-~~~--~~~~---~~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
++|.|.+.+- |. ..+.|++++..+..+... ... .++. .+.|.|......+...|+|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 5799999987 43 589999999864332111 111 1111 134455444556667899988653
No 374
>KOG4228|consensus
Probab=94.63 E-value=0.16 Score=54.77 Aligned_cols=101 Identities=18% Similarity=0.023 Sum_probs=58.1
Q ss_pred EEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcccccc
Q psy12426 286 IYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSG 365 (616)
Q Consensus 286 ~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~ 365 (616)
.|+|.+....|.+.....+.+..-|..+.. ..++..........|..... ....|.+.++..... .........
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~-~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~-~~~~~~~~~ 74 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPST-PNVTGSTATSWVQAELLGST----WPNYYQVIFKALSSG-YGYIDVDLT 74 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCC-cccccccccceeehhhccCC----ChhhhheeeeEeccC-cceeeccce
Confidence 389999998888888888888776665554 45667777778888874322 345565555433222 111111222
Q ss_pred ceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426 366 TYTRAENLIEGHDYNFRVKAVNKIGESLP 394 (616)
Q Consensus 366 ~~~~i~~L~~~~~y~~~v~a~n~~g~~~~ 394 (616)
..+....+.+-+-+.+ .+.|..|.+..
T Consensus 75 ~~~s~~~~~~~~~~~~--~evnt~~~a~~ 101 (1087)
T KOG4228|consen 75 TRLSYPCLSPPSFLEL--VEVNTIGRAPF 101 (1087)
T ss_pred eecccCCCCCcchhhh--hhccccccccc
Confidence 2234444444444444 55666665544
No 375
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=94.61 E-value=2.6 Score=39.29 Aligned_cols=205 Identities=15% Similarity=0.075 Sum_probs=107.2
Q ss_pred EecCCCCCCcEEEEEEEEcCCCCceeeEEEEE-ecCCCCCCC-CccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeC
Q psy12426 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV-LDIPSPPEG-PLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM 352 (616)
Q Consensus 275 ~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v-~~~p~~p~~-~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~ 352 (616)
.-.++.....+.|.+.+.+..+..+.++...- .....|+.. .+.+....++.+.|+|..+... ..|.|...+.
T Consensus 127 i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~-----~yy~IY~~~~ 201 (343)
T COG3401 127 IDSDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE-----DYYRIYASDS 201 (343)
T ss_pred eecccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCcccc-----ceEEEeccCC
Confidence 33467777888899998886665544433221 111122221 1333445667889999854332 2677766555
Q ss_pred CCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecC
Q psy12426 353 ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTP 432 (616)
Q Consensus 353 ~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~ 432 (616)
+............+.+.......|..|.|.+.+....|..... +...++......|..|..+.-. ...+.+.|.|+.
T Consensus 202 g~e~~~~ia~t~~n~y~d~~eglga~~~y~VTtVd~~~~es~l--p~~~t~~~~~g~~e~pt~~g~t-~~~s~i~V~~E~ 278 (343)
T COG3401 202 GNEEYGFIAQTTENSYYDVKEGLGAVEYYKVTTVDNTGFESDL--PNEPTVGETGGRYEVPTIPGET-TEASFIGVAAEQ 278 (343)
T ss_pred ccccccceeeccccchhhhhhccCceeEEEEEEEcCCcceecc--CCccccccccCCcccccCCCce-eeeeeeeEEecc
Confidence 4444333333333344333334477888888888755543221 2222222222222222211111 123445677774
Q ss_pred CCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCC
Q psy12426 433 PKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE 493 (616)
Q Consensus 433 p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~ 493 (616)
-... ....|.++....+..-.. .......+.+..+.++..|.+.|.+++..|.+.
T Consensus 279 ~~~~---~av~ytvyr~~~g~~~~~---f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 279 NQLR---QAVTYTVYRVEDGTPTKF---FTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred cccc---eeeEEeeeeccCCCccee---eeeeeccccchhhccccceeEEEEEeccccccc
Confidence 2111 233455544333221111 111245677778889999999999999998764
No 376
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=94.56 E-value=0.38 Score=35.93 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=40.6
Q ss_pred CCeEEEEEEEe-eecCceeEEEECCeeecccCcEEEE-ecCC----ceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426 231 GSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIV-NDDK----STKLKVFDSKRGDSGIYTLAVKNSWG 296 (616)
Q Consensus 231 g~~~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g 296 (616)
|+.+.+.|.+. +.|.+.+.|+.++..+......... ..+. .+.|.+..-...+...++|.|.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 67999999665 6688999999998876211111111 1111 13455554444467789999988643
No 377
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.45 E-value=0.12 Score=38.73 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=27.8
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEe-eecC--CeeeeeeCCeee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANII-GEPV--PHVDWRAGGNPL 43 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~-g~P~--p~v~W~~~~~~l 43 (616)
||.|..+++ +.+|..+++.|.+. +.|. ..|.|+|+...+
T Consensus 3 ~p~i~~~~~----l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l 44 (99)
T cd07689 3 DPEILLSGP----LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLL 44 (99)
T ss_pred CccCcccCc----ccCCceEEEEEEecCcccCCceEEEEecCccee
Confidence 455654433 47899999999965 5666 569999977543
No 378
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=94.34 E-value=0.15 Score=38.55 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=23.0
Q ss_pred cCCeEEEEEEEeee-c-CceeEEEECCeeecc
Q psy12426 230 AGSNFEFDINVIGE-P-IPTKEWLCNDITIIS 259 (616)
Q Consensus 230 ~g~~~~l~c~~~~~-p-~~~~~W~~~~~~~~~ 259 (616)
.+..++|.|.+.+- | ...+.|.++|..+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 34568999999985 4 347899999988643
No 379
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=94.17 E-value=0.34 Score=36.52 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=22.6
Q ss_pred CCeEEEEEEEeee-cC-ceeEEEECCeeecc
Q psy12426 231 GSNFEFDINVIGE-PI-PTKEWLCNDITIIS 259 (616)
Q Consensus 231 g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~ 259 (616)
+...+|.|.+.|- |. ..+.|.+||..+..
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~ 45 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTD 45 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence 4557899999985 43 58899999988654
No 380
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.09 E-value=20 Score=44.19 Aligned_cols=342 Identities=12% Similarity=0.045 Sum_probs=167.0
Q ss_pred ceEecCCCeEEEEEEEeeecCCeeeeeeCCee-e--e---------eccceEE--EeecCCCCCce-------------e
Q psy12426 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNP-L--N---------LRPIWEK--CAQTEGDTPKG-------------K 63 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~-l--~---------~~G~Y~C--~a~n~~~~~~~-------------~ 63 (616)
+..+..|+.|+|.-...+-....+.|..++.. . . ..|.|.. .|.|..++... .
T Consensus 1706 ~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~tHtf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~ 1785 (2740)
T TIGR00864 1706 DNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFMSHSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLK 1785 (2740)
T ss_pred CCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCceEEEccCCceEEEEEEEEccccccceeEEEEEEeccccce
Confidence 44567799999998766666669999977652 1 1 1888876 78888776222 1
Q ss_pred Eeeec-------------------cCCccc---eeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcc
Q psy12426 64 VLDLI-------------------EGNHPI---WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 121 (616)
Q Consensus 64 v~~~~-------------------~~~~p~---w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~ 121 (616)
+.... ..|.+. |.-.+............-. ....|.+...|.|..+....+....++
T Consensus 1786 i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~-~aG~ytV~L~AsN~vs~~~~s~~~~VQ 1864 (2740)
T TIGR00864 1786 IRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKHACMTFP-DAGTFAIRLNASNAVSGKSASREFFAE 1864 (2740)
T ss_pred EecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccceeEEecC-CCeEEEEEEEEEcccCcceeeeeEEEE
Confidence 11000 113333 4333222111222222222 223566677788888755544221111
Q ss_pred eee----cCCC-------ceee----eecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEE
Q psy12426 122 IAR----AKKG-------KCYH----LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYE 186 (616)
Q Consensus 122 ~~~----~~~p-------~~~~----~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~ 186 (616)
... .... ..+. +..++.-.|.|.. .+ +.+... .++ ..+ ...-..-..|.
T Consensus 1865 e~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~f--Gd---------gs~~~~--t~~--~t~-~HsY~~~G~Y~ 1928 (2740)
T TIGR00864 1865 EPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQI--GG---------AAPEVL--QPG--PRF-SHSFPRVDDHM 1928 (2740)
T ss_pred EecceEEEecccccccCCCEEEEEEEecCCCceEEEEEe--CC---------CCceee--cCC--CeE-EeecCCCCcEE
Confidence 100 0000 0111 1134445566666 31 111111 011 122 23344566788
Q ss_pred EEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEE
Q psy12426 187 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV 266 (616)
Q Consensus 187 y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~ 266 (616)
+.+.|.|..+..... ..+.+.... ..+.+.......+..|+...|.-.+.......+.|+.....+..+.. +.
T Consensus 1929 VtV~A~N~Vs~~~a~---~~V~Vle~V--~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~--~~ 2001 (2740)
T TIGR00864 1929 VNLRAKNEVSCAQAN---LHIEVLEAV--RGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSL--VI 2001 (2740)
T ss_pred EEEEEEeccceeeee---EEEEEEEec--cceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcc--ee
Confidence 999999998874432 222221111 11111111122367888889988887777778999876443333322 12
Q ss_pred ecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccce-----eecCCeEEEEEeCCCCCCCCc
Q psy12426 267 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPS-----NITKSSCNLEWRAPRDDGGTD 341 (616)
Q Consensus 267 ~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~-----~~~~~~~~l~W~~~~~~~~~~ 341 (616)
..+....++... .-.+.+++.|.|..|.......+.++.+... +.+. ......+.+..... .+..
T Consensus 2002 ~~G~~vty~~~~---~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~----~~L~~~p~~~~~n~~v~f~~~~~---~~~~ 2071 (2740)
T TIGR00864 2002 HMGKDVSYTAEA---AGLLEIQLGAFNALGAENITLQLEAQDALMD----AALQAGPQDCFTNKMAQFEAATS---PKPN 2071 (2740)
T ss_pred ecCCceEEccCC---CcEEEEEEEEEcccCcccccEEEEEEeheee----EEEeecCcceecCceEEEEEEEc---cCCC
Confidence 223333444432 3466777899998888776666666554311 0011 11122333332210 0112
Q ss_pred eEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426 342 ILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES 392 (616)
Q Consensus 342 i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~ 392 (616)
-..|.+.+.+..... ........+.. .++| .|.++|.|.|.....
T Consensus 2072 ~v~~~WDFGDGt~~~---~T~~~~~sHtY--~r~G-~Y~V~V~a~N~VS~~ 2116 (2740)
T TIGR00864 2072 FMACHWDFGDGSAGQ---DTDEPRAEHEY--LHPG-DYRVQVNASNLVSFF 2116 (2740)
T ss_pred cEEEEEEecCCCCcc---ccCCceeEEEe--cCCc-cEEEEEEEEcceeee
Confidence 245666554432211 11111222222 2444 799999999988764
No 381
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=94.04 E-value=0.37 Score=36.39 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=24.0
Q ss_pred cCCeEEEEEEEeee-cC-ceeEEEECCeeecc
Q psy12426 230 AGSNFEFDINVIGE-PI-PTKEWLCNDITIIS 259 (616)
Q Consensus 230 ~g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~ 259 (616)
.|..++|.|.+.+- |. ..+.|++++..+..
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETE 44 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence 56788999999985 43 37899999988654
No 382
>PHA02982 hypothetical protein; Provisional
Probab=93.91 E-value=1.4 Score=37.76 Aligned_cols=119 Identities=16% Similarity=0.232 Sum_probs=73.2
Q ss_pred ceEEEcCCeEEEEEEEeeec-CceeEEEECCeeecc-------------------cCcEEEEecCCceEEEecCCCCCCc
Q psy12426 225 DIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIIS-------------------KDRFKIVNDDKSTKLKVFDSKRGDS 284 (616)
Q Consensus 225 ~~~v~~g~~~~l~c~~~~~p-~~~~~W~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~~~ 284 (616)
++....++.+.|.|...... ..+..|..++..... ...+.+..++..++|+|.++.....
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 45566788899999854332 336778875432211 1233455567788999999999999
Q ss_pred EEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc
Q psy12426 285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG 361 (616)
Q Consensus 285 g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~ 361 (616)
|-|+|.+....+....- -.+..+..+.+.+.|.. .++...+..|...+. .+-..|...+
T Consensus 113 GCYtc~~ks~~~k~E~c---------------~kCl~V~~~~V~~~W~e--~nNeT~V~CyVgS~~-~dvp~W~V~G 171 (251)
T PHA02982 113 GCFTCEAKDAEGKEETC---------------EKCLEIQKEDILYVVEE--HNNETIITCFVGSKH-GDVPRFIVAG 171 (251)
T ss_pred CceEEEEecCCCchhee---------------heeeeEecceEEEEEEe--cCCeEEEEEEEEecc-CCCccEEEee
Confidence 99999998865544321 23445556788899983 333334455544442 2223565443
No 383
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=93.72 E-value=0.37 Score=36.24 Aligned_cols=63 Identities=19% Similarity=0.086 Sum_probs=36.5
Q ss_pred cCCeEEEEEEEeee-c-CceeEEEECCeeecccCcE-EEEec--CCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 230 AGSNFEFDINVIGE-P-IPTKEWLCNDITIISKDRF-KIVND--DKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 230 ~g~~~~l~c~~~~~-p-~~~~~W~~~~~~~~~~~~~-~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
.|....|.|.+.|- | ...+.|.+||..+. +... ....+ +.-.......+.+.+.-.|.|.+..
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H 81 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRH 81 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEE
Confidence 45566899999985 3 34789999999875 3211 11111 1111112223345566678888865
No 384
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=92.93 E-value=0.47 Score=32.58 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=34.8
Q ss_pred CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
...+.|.|.. ...|.|++ |..+.... ...+.+-+...+..|.|+|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 3468899965 24599999 54433111 23778888888999999998876
No 385
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=92.69 E-value=0.87 Score=33.41 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=38.8
Q ss_pred CCeEEEEEEEeee-cC-ceeEEEECCeeecccCcEEEE--ecCC----ceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426 231 GSNFEFDINVIGE-PI-PTKEWLCNDITIISKDRFKIV--NDDK----STKLKVFDSKRGDSGIYTLAVKNSW 295 (616)
Q Consensus 231 g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~~~~~~~~--~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~ 295 (616)
+..+.|.|.+.+- |. ..+.|++++..+......... ..++ .+.|.+. ..+...|+|.+....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 7789999999986 43 379999999987543322211 1121 1344444 444557889887643
No 386
>KOG3632|consensus
Probab=92.64 E-value=1.2 Score=47.36 Aligned_cols=198 Identities=20% Similarity=0.227 Sum_probs=108.9
Q ss_pred cEEEEEEEEcCCCCcee-eEEEEE-ecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc
Q psy12426 284 SGIYTLAVKNSWGTDKG-TAKVTV-LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG 361 (616)
Q Consensus 284 ~g~y~c~a~n~~g~~~~-~~~l~v-~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~ 361 (616)
.|...+.+..+.|.... ...|.+ ...+..|.. +.+..++..+..++|-+...+ .. .+.|...... ...
T Consensus 644 s~~isvq~ltSrGsqd~lrc~Llvgg~a~vvpsq-lrv~n~tqtSa~itwvp~nsn----~~--Hviyln~eE~---~ps 713 (1335)
T KOG3632|consen 644 SGYISVQRLTSRGSQDQLRCILLVGGAAPVVPSQ-LRVWNATQTSAMITWVPFNSN----FL--HVIYLNAEEP---RPS 713 (1335)
T ss_pred ceeeehhhhhccCCCCcceeeEeccccccccchh-hhhhhhhchhhheeeeecCCC----cc--eeeecCCccC---CCc
Confidence 44444444445554432 222222 345566666 788888999999999853221 11 1222111111 111
Q ss_pred ccccceEEeccccCCCeEEEEEEEEec-Cc-----CCCCccccCCEEccC-CCCCCCCCCCCEEEE-ecCCeEEEEecCC
Q psy12426 362 DVSGTYTRAENLIEGHDYNFRVKAVNK-IG-----ESLPLVCQSPITAKD-PFGRPDRPGQPTVTD-WGKDHVDLEWTPP 433 (616)
Q Consensus 362 ~~~~~~~~i~~L~~~~~y~~~v~a~n~-~g-----~~~~~~~s~~~~~~~-~~~~p~~p~~~~~~~-~~~~~v~l~W~~p 433 (616)
......+++.+|.+++.|..+|.+.-. .+ ..........+.+.+ +.++|.+|.++++.. .+...+.++|.+|
T Consensus 714 ~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPp 793 (1335)
T KOG3632|consen 714 VAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPP 793 (1335)
T ss_pred hhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCc
Confidence 122345778899999999999887643 11 112222233344433 456778888888764 4778899999987
Q ss_pred CC-----CCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCC-CeEEEEEEEEcCCCCCC
Q psy12426 434 KK-----DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEG-EEYEFRVIAVNKGGPGE 493 (616)
Q Consensus 434 ~~-----~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~-t~Y~~~v~a~n~~G~g~ 493 (616)
.- .++..+++|.++.. +........-....+.+.+..|.-+ ..-.+.|+.....|.+-
T Consensus 794 tldsag~sngv~vtgYavyad--gqkv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesv 857 (1335)
T KOG3632|consen 794 TLDSAGCSNGVAVTGYAVYAD--GQKVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESV 857 (1335)
T ss_pred eeccccccCceeeeeeeeeeC--CceeeeeecccCCceEEEeeeehhhheecceeEEecccCcccc
Confidence 53 45667899999875 2222222222233445555555442 22345555555556543
No 387
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=92.43 E-value=0.95 Score=35.16 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=45.3
Q ss_pred ceEEEcCCeEEEEEEEeeecC---ceeEEEECCe-ee--------------cccCcEEE--EecCCceEEEecCCCCCCc
Q psy12426 225 DIKVRAGSNFEFDINVIGEPI---PTKEWLCNDI-TI--------------ISKDRFKI--VNDDKSTKLKVFDSKRGDS 284 (616)
Q Consensus 225 ~~~v~~g~~~~l~c~~~~~p~---~~~~W~~~~~-~~--------------~~~~~~~~--~~~~~~~~l~i~~l~~~~~ 284 (616)
...+..|..++|.|.+++... ..+.|.|... .+ ....++.+ ..+.+...|.|.+|+.+|.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 355677888999999976543 4678887321 10 01122222 3345567899999999999
Q ss_pred EEEEEEE
Q psy12426 285 GIYTLAV 291 (616)
Q Consensus 285 g~y~c~a 291 (616)
..|.|..
T Consensus 87 a~Y~Ca~ 93 (115)
T cd05721 87 DIYFCKI 93 (115)
T ss_pred eEEEEEe
Confidence 9999976
No 388
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=92.08 E-value=0.51 Score=36.31 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=23.3
Q ss_pred cCCeEEEEEEEeeecC--ceeEEEECCeeecc
Q psy12426 230 AGSNFEFDINVIGEPI--PTKEWLCNDITIIS 259 (616)
Q Consensus 230 ~g~~~~l~c~~~~~p~--~~~~W~~~~~~~~~ 259 (616)
.+..++|.|.+.|--+ ..+.|.+++..+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence 4668999999998633 36899999987643
No 389
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=91.64 E-value=1.5 Score=34.13 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=50.5
Q ss_pred ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc---cccceEEecccc--CCCeEEEEEEEEecCcC
Q psy12426 317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD---VSGTYTRAENLI--EGHDYNFRVKAVNKIGE 391 (616)
Q Consensus 317 ~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~~i~~L~--~~~~y~~~v~a~n~~g~ 391 (616)
+.+.. ......|.|+++.. ...-..|.++++......|..... .....+.++... ....|.+||+|..+...
T Consensus 28 v~~~s-~nf~~iL~W~~~~~--~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~~~ 104 (107)
T PF01108_consen 28 VTVDS-VNFKHILRWDPGPG--SPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVGNQT 104 (107)
T ss_dssp EEEEE-ETTEEEEEEEESTT--SSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEETTEE
T ss_pred eEEEE-ECCceEEEeCCCCC--CCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeCCcc
Confidence 44443 35568999997332 236688999999777788987732 445677777644 67899999999865543
No 390
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=91.53 E-value=0.84 Score=35.89 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=24.9
Q ss_pred EEcCCeEEEEEEEeee-cC-ceeEEEECCeeeccc
Q psy12426 228 VRAGSNFEFDINVIGE-PI-PTKEWLCNDITIISK 260 (616)
Q Consensus 228 v~~g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~~ 260 (616)
+..+..+.|.|.+.+- |. ..+.|++|+..+..+
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g 49 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDG 49 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCC
Confidence 3355678999999985 44 489999999887543
No 391
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=91.11 E-value=0.46 Score=32.98 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=28.8
Q ss_pred EEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCC
Q psy12426 444 YIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE 493 (616)
Q Consensus 444 Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~ 493 (616)
|+......+++|...... ...+.+++|.|| .|.|+|+|.+..|...
T Consensus 10 Y~Y~l~g~d~~W~~~~~~---~~~~~~~~L~~G-~Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 10 YRYRLEGFDDEWITLGSY---SNSISYTNLPPG-KYTLEVRAKDNNGKWS 55 (66)
T ss_dssp EEEEEETTESSEEEESST---S-EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred EEEEEECCCCeEEECCCC---cEEEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence 444443334477765322 229999999999 7999999999987643
No 392
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=90.88 E-value=2.2 Score=32.28 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=36.6
Q ss_pred eEEEEEEE-eeecCceeEEEECCeeecccCcEEE--EecCC---ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426 233 NFEFDINV-IGEPIPTKEWLCNDITIISKDRFKI--VNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGT 297 (616)
Q Consensus 233 ~~~l~c~~-~~~p~~~~~W~~~~~~~~~~~~~~~--~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~ 297 (616)
...+.|.+ .|.|.+.|.|+++.. ....... ..++. .+.|.+......+.-.|+|.+.+..-.
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 17 VTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 46688998 478999999999721 1111111 11111 235555544444556899999886533
No 393
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=90.67 E-value=0.78 Score=35.20 Aligned_cols=81 Identities=20% Similarity=0.269 Sum_probs=55.5
Q ss_pred CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecC---Cc-----cEEEcCCCCCCCeEE
Q psy12426 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPA---NI-----TATSVPDLKEGEEYE 480 (616)
Q Consensus 409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~---~~-----~~~~l~~L~p~t~Y~ 480 (616)
+|..|.++.........++.-|++.. .++.+ ..|.+.|...+..|........ +. -.+.-.+..--+.|.
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~-~~~l~-~~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~ 84 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGS-EGNLP-TNYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYC 84 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEES-SSTST-CEEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCC-CCCCC-CcEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEE
Confidence 56778888888888889999999643 33332 3499999987766666643221 12 234444777889999
Q ss_pred EEEEEEcCCCC
Q psy12426 481 FRVIAVNKGGP 491 (616)
Q Consensus 481 ~~v~a~n~~G~ 491 (616)
++|.|.|..|.
T Consensus 85 i~V~a~~~~~~ 95 (104)
T PF09067_consen 85 IQVEATNALGS 95 (104)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEeccCCCc
Confidence 99999998774
No 394
>PHA03270 envelope glycoprotein C; Provisional
Probab=90.53 E-value=18 Score=35.24 Aligned_cols=80 Identities=11% Similarity=0.006 Sum_probs=55.2
Q ss_pred CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC---cee
Q psy12426 172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI---PTK 248 (616)
Q Consensus 172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~---~~~ 248 (616)
..|.|..|+..++|.|.-...+..+....... +.+. ...+|.+.+ ...-+..|+...-.|.+...=+ ..+
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~---VtV~-~yr~Psvsv---~~~PvL~Ge~Y~AtC~va~YYPp~Sv~l 254 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTW---TRVR-MFRRPSLSI---RPHAVLEGEPFGATCVAANYYPGDRAAF 254 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeE---EEEE-EecCCcccc---cCCccccCCCceEEEEeeeecCCCceEE
Confidence 36999999999999999987776653222221 2222 234565542 2234678999999999987633 379
Q ss_pred EEEECCeeec
Q psy12426 249 EWLCNDITII 258 (616)
Q Consensus 249 ~W~~~~~~~~ 258 (616)
.|++|+..+.
T Consensus 255 rWf~ng~~V~ 264 (466)
T PHA03270 255 RWFEGGDEVF 264 (466)
T ss_pred EEEeCCcccc
Confidence 9999998875
No 395
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=90.46 E-value=1.9 Score=32.59 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=37.5
Q ss_pred eEEEEEEEe-eecCceeEEEECCeeecccCcEEEEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426 233 NFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDK 299 (616)
Q Consensus 233 ~~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~ 299 (616)
.+.+.|.+. +.|.+.|+|+++..... ........++. .+.|.+......+.-.|+|.+.+..-...
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~ 86 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEP 86 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 467899877 77888999999722110 00111111121 23555544444456689999998654433
No 396
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=90.25 E-value=1.4 Score=33.24 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=36.3
Q ss_pred CCeEEEEEEEeee-cC-ceeEEEECCeeecccCcE--EEEecCCc----eEEEecCCCCCCcEEEEEEEEcC
Q psy12426 231 GSNFEFDINVIGE-PI-PTKEWLCNDITIISKDRF--KIVNDDKS----TKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 231 g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~~~~~--~~~~~~~~----~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
+..+.|.|.+.|- |. ..+.|.+++..+...... .....++. +.|.+..-...+...|+|.+...
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 4568899999985 44 589999999886322110 11111111 22333322223456889988764
No 397
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=90.03 E-value=1.9 Score=32.64 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=22.4
Q ss_pred EEcCCeEEEEEEEeee--cC-ceeEEEECCee
Q psy12426 228 VRAGSNFEFDINVIGE--PI-PTKEWLCNDIT 256 (616)
Q Consensus 228 v~~g~~~~l~c~~~~~--p~-~~~~W~~~~~~ 256 (616)
+..+..++|.|.+.+- |. ..++|.|++..
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 4457789999999988 33 37899998743
No 398
>KOG1480|consensus
Probab=89.91 E-value=0.18 Score=51.80 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=45.9
Q ss_pred CCCCCceEecCCCeEEEEEE-EeeecCCeeeeeeCCeeeee---------------------ccceEEEeecCCCC
Q psy12426 6 RRHLGDIKLSAGTTLKFDAN-IIGEPVPHVDWRAGGNPLNL---------------------RPIWEKCAQTEGDT 59 (616)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~l~~---------------------~G~Y~C~a~n~~~~ 59 (616)
.+.|.-..|..++.+.|.|. ..|.|+..++|+|++..+.. .|+|+|+|.|..+.
T Consensus 133 ~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 133 EQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred ccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcc
Confidence 44577788999999999998 78999999999999875532 99999999998665
No 399
>KOG4597|consensus
Probab=89.64 E-value=0.88 Score=44.12 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=62.3
Q ss_pred ccCCcceEEEcCCeEEEEEEEeeecCceeEEEE---CCeeecccCcEEEE--ecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC---NDITIISKDRFKIV--NDDKSTKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 220 ~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~---~~~~~~~~~~~~~~--~~~~~~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
..-+....+-.+++.++.|-+.|.+.+.+.|.+ ++..+.......+. .-.+...|.|-+....+++-|+|.+.+.
T Consensus 200 ~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 200 VDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred ccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence 344556678889999999999999999999976 33322211111110 0112347899999999999999999999
Q ss_pred CCCceeeEEEEE
Q psy12426 295 WGTDKGTAKVTV 306 (616)
Q Consensus 295 ~g~~~~~~~l~v 306 (616)
.|.....+.+.+
T Consensus 280 ~g~~~rdv~c~s 291 (560)
T KOG4597|consen 280 AGFLRRDVPCSS 291 (560)
T ss_pred cceeeccceeee
Confidence 998877776655
No 400
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.41 E-value=2.8 Score=31.12 Aligned_cols=42 Identities=10% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCceEecCCCeEEEEEEEee-----ecCCeeeeeeCCeeeeeccceEE
Q psy12426 9 LGDIKLSAGTTLKFDANIIG-----EPVPHVDWRAGGNPLNLRPIWEK 51 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~l~~~G~Y~C 51 (616)
|+...|..|+.|+..|...- .....|.|..|+..++ ...|+-
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-~~qy~~ 56 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-GSQYRV 56 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-CGCEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-hhHcce
Confidence 66778999999999999652 2556799999998666 555543
No 401
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=89.08 E-value=3.5 Score=31.13 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=40.3
Q ss_pred cceEEEcCCeEEE-EEEEe-eecCceeEEEECCeeecccCcEEEEecCC---ceEEEecCCCCCCcEEEEEEEEcC
Q psy12426 224 SDIKVRAGSNFEF-DINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNS 294 (616)
Q Consensus 224 ~~~~v~~g~~~~l-~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~ 294 (616)
....+.+|+.+.+ .|.+. ++|.+.|+|+.+..... ........++. .+.|.+......+.-.++|.+...
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 3456778888888 88765 66888999998633211 10001111111 134555444444666888988764
No 402
>KOG4806|consensus
Probab=89.05 E-value=20 Score=33.68 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=68.1
Q ss_pred eccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEe--cCCeEEEEecCCCCCCCCcceeEEEE
Q psy12426 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDW--GKDHVDLEWTPPKKDGGSPISQYIIE 447 (616)
Q Consensus 370 i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~i~~Y~i~ 447 (616)
-..+.++..|.+++...|..-.-........ +-.+....|.-|.+-.+..+ ..++.++.|....+. -..|=|+
T Consensus 288 Qfvv~~~~~~~~rf~~~ndde~~~~v~V~aS-t~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~----~~kyCIy 362 (454)
T KOG4806|consen 288 QFVVLPGERYLMRFEPSNDDEALQKVMVAAS-TEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE----ELKYCIY 362 (454)
T ss_pred EEEecCCCceEEEEEecCCchhhheeEeeee-cccccCcCCCCCCCceEeeeccccchheeeeccCcch----heeEEEE
Confidence 3456778889999988875543211100000 01112355777777666655 678899999853221 2346665
Q ss_pred EeeCCC--------------------------CceEe---EeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCC
Q psy12426 448 KKPKYG--------------------------PWEKA---CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPG 492 (616)
Q Consensus 448 ~~~~~~--------------------------~~~~~---~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g 492 (616)
.+...+ .|... ...+.+...-+|-+|.||.+|.+-|.|.-..|..
T Consensus 363 ~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~ 436 (454)
T KOG4806|consen 363 VFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKP 436 (454)
T ss_pred EecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcc
Confidence 544321 12211 1112223466788999999999999997666543
No 403
>PHA03271 envelope glycoprotein C; Provisional
Probab=88.19 E-value=26 Score=33.94 Aligned_cols=83 Identities=11% Similarity=-0.046 Sum_probs=56.7
Q ss_pred CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC---c
Q psy12426 170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI---P 246 (616)
Q Consensus 170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~---~ 246 (616)
....+.|.++...++|.|++...+........ ..+.+....-+|.+.+. ..-+..|+...-.|.+...=+ .
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e---~~~~~~v~~RPPsVsV~---a~PVL~Ge~YkAtC~vAnYYPP~Sv 278 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLD---KHIYIRVCQRPASVDVL---APPVLSGENYKASCIVRHFYPPGSV 278 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCcccc---ceEEEEEEecCCCcccc---CCccccCCCceEEEEeeeecCCCce
Confidence 34478999999999999988877655442211 22444444456655432 234678999999999987633 3
Q ss_pred eeEEEECCeeec
Q psy12426 247 TKEWLCNDITII 258 (616)
Q Consensus 247 ~~~W~~~~~~~~ 258 (616)
.+.|++||....
T Consensus 279 rlrWf~nG~~V~ 290 (490)
T PHA03271 279 YVSWRQNGNIAT 290 (490)
T ss_pred EEEEEeCCcccc
Confidence 799999988764
No 404
>KOG4806|consensus
Probab=88.14 E-value=22 Score=33.45 Aligned_cols=110 Identities=18% Similarity=0.286 Sum_probs=61.3
Q ss_pred cCCCCCCcEEEEEEEEcCCCCce-----eeEEEEEecCCCCCCCCcccee--ecCCeEEEEEeCCCCCCCCceEEEEEEE
Q psy12426 277 FDSKRGDSGIYTLAVKNSWGTDK-----GTAKVTVLDIPSPPEGPLKPSN--ITKSSCNLEWRAPRDDGGTDILHYVVEK 349 (616)
Q Consensus 277 ~~l~~~~~g~y~c~a~n~~g~~~-----~~~~l~v~~~p~~p~~~~~~~~--~~~~~~~l~W~~~~~~~~~~i~~y~v~~ 349 (616)
..+.+...|.|++...|...... .+...+....|..|.+ -.+.. ..-+++++.|....+. -..|.|..
T Consensus 289 fvv~~~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP~d-TtVk~v~r~CSsAtIaW~gs~d~----~~kyCIy~ 363 (454)
T KOG4806|consen 289 FVVLPGERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELPQD-TTVKNVRRRCSSATIAWNGSPDE----ELKYCIYV 363 (454)
T ss_pred EEecCCCceEEEEEecCCchhhheeEeeeecccccCcCCCCCCC-ceEeeeccccchheeeeccCcch----heeEEEEE
Confidence 34555678888888887543321 2333444556666765 33333 4556799999854332 34455544
Q ss_pred EeCCCC-------------------------CEEEccc-----cccceEEeccccCCCeEEEEEEEEecCcC
Q psy12426 350 MDMETG-------------------------RWVPMGD-----VSGTYTRAENLIEGHDYNFRVKAVNKIGE 391 (616)
Q Consensus 350 ~~~~~~-------------------------~~~~~~~-----~~~~~~~i~~L~~~~~y~~~v~a~n~~g~ 391 (616)
++.... .|..... ..-.+-+|.+|.||..|.+-|.|.-..|.
T Consensus 364 ~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~ 435 (454)
T KOG4806|consen 364 FNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGK 435 (454)
T ss_pred ecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCc
Confidence 332110 0111110 11224567899999999999988654443
No 405
>PHA03042 CD47-like protein; Provisional
Probab=87.95 E-value=0.95 Score=40.59 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=31.3
Q ss_pred CCeEEEEEEEeee-----cCCeeeeeeCCeeeee-----------------ccceEEEeecCC
Q psy12426 17 GTTLKFDANIIGE-----PVPHVDWRAGGNPLNL-----------------RPIWEKCAQTEG 57 (616)
Q Consensus 17 g~~v~l~C~~~g~-----P~p~v~W~~~~~~l~~-----------------~G~Y~C~a~n~~ 57 (616)
+++|.+.|.+..- -.-.|.|.++++.+-. .|+|+|+|.+..
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f~~~l~GNYTCEv~~l~ 93 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNFSKNLSGNYTCEAINKF 93 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEeccccCCCceeEEEeecc
Confidence 6899999997642 2345999998876522 999999998864
No 406
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=87.85 E-value=4.8 Score=29.89 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=43.4
Q ss_pred cceEEEcCCeEEEEEEEeee-----cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEE
Q psy12426 224 SDIKVRAGSNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV 291 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a 291 (616)
....+..|+.++.+|..... ....+.|..++..+ +..++....+ ..+++++.++.....-.|.|..
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~-~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVIND-TVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEEST-TEEEEEESS--SSEEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCC-eEEEEEEccCCCCCceEEEEEE
Confidence 34567899999999999744 34479999998854 4555554433 3478899998877666666653
No 407
>PHA02633 hypothetical protein; Provisional
Probab=87.19 E-value=1.9 Score=28.88 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=29.6
Q ss_pred eEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy12426 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI 309 (616)
Q Consensus 272 ~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~ 309 (616)
..|-|.++...|+|.|.|..+|..-....+..++|...
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 47889999999999999999986555566666666543
No 408
>PHA02982 hypothetical protein; Provisional
Probab=86.99 E-value=2.7 Score=36.03 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=57.9
Q ss_pred ceEecCCCeEEEEEE-EeeecCCeeeeeeCCee-eee--ccceEEEeecCC-CCCce-eEeeeccCCccceeeccccCCC
Q psy12426 11 DIKLSAGTTLKFDAN-IIGEPVPHVDWRAGGNP-LNL--RPIWEKCAQTEG-DTPKG-KVLDLIEGNHPIWEKCAQTEGD 84 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~-l~~--~G~Y~C~a~n~~-~~~~~-~v~~~~~~~~p~w~~~~~~~~~ 84 (616)
|+....|+.|.|.|. -.+.---...|.+++.. |.. .|.+...|.|-. |..+. .-+.+ .+.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv--------------~g~ 98 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSV--------------SGN 98 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEE--------------ecc
Confidence 566778999999998 33344446889986532 221 455555555542 11111 11111 345
Q ss_pred CCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426 85 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 114 (616)
Q Consensus 85 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~ 114 (616)
.++|+|.++.+...|=|.|.|..+.+..+.
T Consensus 99 ~STLTIkk~~i~N~GCYtc~~ks~~~k~E~ 128 (251)
T PHA02982 99 SSTFTMKKPDPQNLGCFTCEAKDAEGKEET 128 (251)
T ss_pred ceeEEeccCCcccCCceEEEEecCCCchhe
Confidence 679999999999999999999976665543
No 409
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=86.63 E-value=2.1 Score=32.55 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=22.4
Q ss_pred EEcCCeEEEEEEEeeec---CceeEEEECCee
Q psy12426 228 VRAGSNFEFDINVIGEP---IPTKEWLCNDIT 256 (616)
Q Consensus 228 v~~g~~~~l~c~~~~~p---~~~~~W~~~~~~ 256 (616)
...+..++|.|.+.+-- ...+.|.+++..
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 33567899999999843 358999999875
No 410
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=86.09 E-value=0.97 Score=36.02 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=17.4
Q ss_pred CCCeEEEEEEEeee-----cCCeeeeeeCCeee
Q psy12426 16 AGTTLKFDANIIGE-----PVPHVDWRAGGNPL 43 (616)
Q Consensus 16 ~g~~v~l~C~~~g~-----P~p~v~W~~~~~~l 43 (616)
=+++|.|.|.+... +.-.|+|.++|+.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~I 58 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDI 58 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEE
Confidence 36899999998652 22348999987754
No 411
>KOG4597|consensus
Probab=85.68 E-value=0.63 Score=45.03 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=28.6
Q ss_pred CCCCceEecCCCeEEEEEEEeeecCCeeeeee
Q psy12426 7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRA 38 (616)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~ 38 (616)
..|....|-.|++..++|-+.|.|.|.|.|.+
T Consensus 201 ~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~q 232 (560)
T KOG4597|consen 201 DCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQ 232 (560)
T ss_pred cCcchhhcccchhhcccccccCCcCceeeeeh
Confidence 34667788999999999999999999999986
No 412
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=85.61 E-value=63 Score=35.67 Aligned_cols=86 Identities=21% Similarity=0.317 Sum_probs=51.4
Q ss_pred CCCCCCCCEEEEecCCeEEEEecCCCC--CCCCcceeEEEEEeeCCC----CceEeE---------eecCCccE--EEcC
Q psy12426 409 RPDRPGQPTVTDWGKDHVDLEWTPPKK--DGGSPISQYIIEKKPKYG----PWEKAC---------IVPANITA--TSVP 471 (616)
Q Consensus 409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~--~~~~~i~~Y~i~~~~~~~----~~~~~~---------~~~~~~~~--~~l~ 471 (616)
+|+...+|++. .....|.|+|+.|.. +.| ...+|.|.+...-. ++.... ...+.... +...
T Consensus 755 PP~rItDL~~~-~~~~~v~LsWTAPG~d~D~G-~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~ 832 (863)
T TIGR00868 755 PPSKITDLEAG-FQGDNIILTWTAPGDVLDHG-RADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPE 832 (863)
T ss_pred CCccceeeEEe-ecCCEEEEEeeCCCccCCCC-ccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCC
Confidence 34444555553 345569999999986 555 58889999965421 111111 11122223 3334
Q ss_pred CC--CCCCeEEEEEEEEcCCCC-CCCCC
Q psy12426 472 DL--KEGEEYEFRVIAVNKGGP-GEPSK 496 (616)
Q Consensus 472 ~L--~p~t~Y~~~v~a~n~~G~-g~~s~ 496 (616)
+. +.++.|.|-++|++..|. |+.|+
T Consensus 833 ~~~~~~~~~~~~ai~a~d~~~~~s~~sn 860 (863)
T TIGR00868 833 GIPIENGTDLFIAVQAIDKANLTSEVSN 860 (863)
T ss_pred cccccCCeEEEEEEEEEccccccccccc
Confidence 42 257899999999999874 55554
No 413
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=85.50 E-value=1.3 Score=39.66 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=36.4
Q ss_pred CceeEEEECC-eeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426 245 IPTKEWLCND-ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN 293 (616)
Q Consensus 245 ~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n 293 (616)
.|.+.|...+ ..+....++.+...| .|.+.+....++|.|+|....
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEE
Confidence 4678999754 445555677777666 899999999999999999865
No 414
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=85.15 E-value=3.7 Score=30.58 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=25.2
Q ss_pred eEEEEEEEeeecCCeeeeeeCCeeeee-------------ccceEEEeecC
Q psy12426 19 TLKFDANIIGEPVPHVDWRAGGNPLNL-------------RPIWEKCAQTE 56 (616)
Q Consensus 19 ~v~l~C~~~g~P~p~v~W~~~~~~l~~-------------~G~Y~C~a~n~ 56 (616)
...|.+.+.|. .+.+.|+.||..+.. .|.|+..+.+.
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vvD~ 80 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVVDA 80 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEEcC
Confidence 55666665555 448999999998832 57776666544
No 415
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=85.09 E-value=8.5 Score=29.32 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=41.0
Q ss_pred EEEEEEEeeecCce--eEEEECCeeecc---cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy12426 234 FEFDINVIGEPIPT--KEWLCNDITIIS---KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTV 306 (616)
Q Consensus 234 ~~l~c~~~~~p~~~--~~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v 306 (616)
+.|.-.....+... ++|..+...... ..++..... ...|.|+.+++.|+|.|.+.+.+..|.. ...+.+.|
T Consensus 30 v~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~e--nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 30 VQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSE--NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETT--TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred EEEEEEcccCCceEEEEEEcCCCcccccccccceEeeecc--CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 44444443344333 556544333221 234444433 3599999999999999999999988876 33444443
No 416
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=83.06 E-value=5.5 Score=27.47 Aligned_cols=38 Identities=26% Similarity=0.494 Sum_probs=26.9
Q ss_pred CCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426 354 TGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL 393 (616)
Q Consensus 354 ~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~ 393 (616)
...|........ .+.+.+|.+| .|+|.|+|.+..|...
T Consensus 18 d~~W~~~~~~~~-~~~~~~L~~G-~Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 18 DDEWITLGSYSN-SISYTNLPPG-KYTLEVRAKDNNGKWS 55 (66)
T ss_dssp ESSEEEESSTS--EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred CCeEEECCCCcE-EEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence 357887765433 8899999998 7999999999888654
No 417
>PHA03269 envelope glycoprotein C; Provisional
Probab=82.87 E-value=54 Score=32.70 Aligned_cols=84 Identities=12% Similarity=-0.044 Sum_probs=54.0
Q ss_pred CCCCeEEeecccCCCeEEEEEEEEeCC-CCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC--
Q psy12426 169 GDTPKGKVLDLIEGNQYEFRVLAVNKG-GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI-- 245 (616)
Q Consensus 169 ~~~~~l~i~~l~~~~~~~y~c~a~n~~-g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~-- 245 (616)
.+...|.|.+|+..++|.|.-+..+.. +..... ..+.+.. ..+|.+.+ ...-+..|+...-.|.+...=+
T Consensus 286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~---~~VtV~~-yr~PsVsV---~p~PVL~Ge~YkAtC~vA~YYPp~ 358 (566)
T PHA03269 286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINE---HHITVMS-YKRPNITV---IGDPVLLGNPYAAYCKVNKYYPPH 358 (566)
T ss_pred CCccceEEeecccccCceEEEEEecCCCCceeee---eEEEEEE-ecCCCccc---cCCccccCCCceEEEEeeeecCCC
Confidence 344569999999999999976654332 221111 1233322 34555432 2234678999999999987633
Q ss_pred -ceeEEEECCeeecc
Q psy12426 246 -PTKEWLCNDITIIS 259 (616)
Q Consensus 246 -~~~~W~~~~~~~~~ 259 (616)
..+.|++|+..+..
T Consensus 359 SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 359 SVIVKWTSNFGNIGK 373 (566)
T ss_pred ceEEEEEeCCcccCc
Confidence 37999999888764
No 418
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=81.94 E-value=3.6 Score=32.85 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=41.1
Q ss_pred EEcCCeEEEEEEEee-----ecCceeEEEECCeeecc--cC-cEEEEe----------cCCceEEEecCCCCCCcEEEEE
Q psy12426 228 VRAGSNFEFDINVIG-----EPIPTKEWLCNDITIIS--KD-RFKIVN----------DDKSTKLKVFDSKRGDSGIYTL 289 (616)
Q Consensus 228 v~~g~~~~l~c~~~~-----~p~~~~~W~~~~~~~~~--~~-~~~~~~----------~~~~~~l~i~~l~~~~~g~y~c 289 (616)
..-++++.|.|.+.. .+...++|..++..+.. +. ...... ..+..+|.+...+.- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 335678899999865 23457999998877531 11 111010 122334666553332 799999
Q ss_pred EEEcCCCCceeeEEEEE
Q psy12426 290 AVKNSWGTDKGTAKVTV 306 (616)
Q Consensus 290 ~a~n~~g~~~~~~~l~v 306 (616)
.+............|..
T Consensus 103 eVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 103 EVTELSREGETTIELKY 119 (130)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEecCCCceEEEEEEE
Confidence 99876655555555543
No 419
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=81.85 E-value=9.2 Score=28.90 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=21.3
Q ss_pred cCCeEEEEEEEeee-c-CceeEEEECCee
Q psy12426 230 AGSNFEFDINVIGE-P-IPTKEWLCNDIT 256 (616)
Q Consensus 230 ~g~~~~l~c~~~~~-p-~~~~~W~~~~~~ 256 (616)
.++.+.|.|.+.+- | ...+.|.+++..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 34568899999985 3 347899999987
No 420
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=81.05 E-value=11 Score=28.95 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=51.2
Q ss_pred CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc---cccce-----EEec--cccCCCeE
Q psy12426 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD---VSGTY-----TRAE--NLIEGHDY 379 (616)
Q Consensus 310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~-----~~i~--~L~~~~~y 379 (616)
|..|.. +.........++.-|++... ++.+ ..|.+.|...+ ..|..+.. ....+ +.+. +..-...|
T Consensus 8 p~~P~~-~~C~S~~~etftC~W~~g~~-~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 8 PEKPEN-LKCFSREMETFTCFWEPGSE-GNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY 83 (104)
T ss_dssp CCCCEE-EEEEBSSSS-EEEEEEEESS-STST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred CCCCcc-CccCCCCCCcEEEEeeCCCC-CCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence 444444 55666677889999996543 3322 33999998765 67777654 11223 4444 77888999
Q ss_pred EEEEEEEecCcC
Q psy12426 380 NFRVKAVNKIGE 391 (616)
Q Consensus 380 ~~~v~a~n~~g~ 391 (616)
.++|.+.|..|.
T Consensus 84 ~i~V~a~~~~~~ 95 (104)
T PF09067_consen 84 CIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEeccCCCc
Confidence 999999998875
No 421
>PLN02533 probable purple acid phosphatase
Probab=81.00 E-value=6.8 Score=39.42 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=44.7
Q ss_pred CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEe----E-------eecCCccEEEcCCCCC
Q psy12426 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKA----C-------IVPANITATSVPDLKE 475 (616)
Q Consensus 408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~----~-------~~~~~~~~~~l~~L~p 475 (616)
..+..|..+++.-.+.+++.|+|.-... .. -.|+|....+ ..... . -.++-.....|++|+|
T Consensus 39 ~~~~~P~qvhls~~~~~~m~V~W~T~~~--~~----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 39 DDPTHPDQVHISLVGPDKMRISWITQDS--IP----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCCceEEEEEcCCCeEEEEEECCCC--CC----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 3566788888887789999999985322 11 2245544322 11111 0 0122235678999999
Q ss_pred CCeEEEEEE
Q psy12426 476 GEEYEFRVI 484 (616)
Q Consensus 476 ~t~Y~~~v~ 484 (616)
+|.|.|+|-
T Consensus 113 ~T~Y~Yrvg 121 (427)
T PLN02533 113 NTVYYYKCG 121 (427)
T ss_pred CCEEEEEEC
Confidence 999999983
No 422
>PHA03052 Hypothetical protein; Provisional
Probab=79.54 E-value=4.7 Score=27.53 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=28.2
Q ss_pred CCceEecCCCeEEEEEEEe-eecC--CeeeeeeCCeee
Q psy12426 9 LGDIKLSAGTTLKFDANII-GEPV--PHVDWRAGGNPL 43 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~-g~P~--p~v~W~~~~~~l 43 (616)
|+.+.+..|+.++|.|.+. |.|. +.|.|.-|+..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 5788899999999999965 4443 568899988766
No 423
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=79.33 E-value=8.3 Score=29.77 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=43.9
Q ss_pred ccceeecCCeEEEEEeCCCC-----CCC------CceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEE
Q psy12426 317 LKPSNITKSSCNLEWRAPRD-----DGG------TDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKA 385 (616)
Q Consensus 317 ~~~~~~~~~~~~l~W~~~~~-----~~~------~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a 385 (616)
+.+ ...++.+.+.+..|.. ... .....|.|.+++.+...-..........+.+.+|.+++.|-++|.+
T Consensus 8 v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 8 VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEEEEEEEE
T ss_pred EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCEEEEEEE
Confidence 444 5667788888887651 100 1135799998876665333333445566799999999999999999
Q ss_pred E
Q psy12426 386 V 386 (616)
Q Consensus 386 ~ 386 (616)
.
T Consensus 87 ~ 87 (106)
T PF09294_consen 87 F 87 (106)
T ss_dssp E
T ss_pred E
Confidence 3
No 424
>KOG1480|consensus
Probab=77.84 E-value=1 Score=46.68 Aligned_cols=55 Identities=7% Similarity=-0.013 Sum_probs=37.1
Q ss_pred cCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCC
Q psy12426 135 GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE 199 (616)
Q Consensus 135 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~ 199 (616)
+.|.....|++ +....+ + ..+........+++......|.+.|+|.|.|-.+...
T Consensus 156 ~~paae~~w~k--~e~~~~---p-----d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 156 GDPKAEVEWLK--NEVVID---P-----DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred cchhhhhhccc--cCCCCC---c-----cccchhhhcCCccccchhhhhcccceeeeehhhcccc
Confidence 66777788887 522222 1 1223334445788888999999999999999877644
No 425
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=77.55 E-value=13 Score=28.06 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=38.4
Q ss_pred EEcCCeEEEEEEEeee-cC--ceeEEEECCeeecccCcEEE---Ee-cCCceEEEecCCCCCCcE-EEEEEEEcC
Q psy12426 228 VRAGSNFEFDINVIGE-PI--PTKEWLCNDITIISKDRFKI---VN-DDKSTKLKVFDSKRGDSG-IYTLAVKNS 294 (616)
Q Consensus 228 v~~g~~~~l~c~~~~~-p~--~~~~W~~~~~~~~~~~~~~~---~~-~~~~~~l~i~~l~~~~~g-~y~c~a~n~ 294 (616)
+..|..+++.|.+.+. |. ..+.|++....+....-... .. ......+++.- ..+|.| .|.|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 3689999999999855 33 47899887655432211100 00 01112344443 366666 899998643
No 426
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=76.45 E-value=31 Score=26.21 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=49.3
Q ss_pred CCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeE---eecCCccEEEcCCCCC----CCeEEEEEE
Q psy12426 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKAC---IVPANITATSVPDLKE----GEEYEFRVI 484 (616)
Q Consensus 413 p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~---~~~~~~~~~~l~~L~p----~t~Y~~~v~ 484 (616)
|.++...-.+...+.-+|.+ ... ..+-..|.|+|+.... .-.... ...+......+..... ...|.|.|.
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~-g~~-~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~ 79 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEP-GKE-APPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVN 79 (99)
T ss_dssp -EEEEEEEETTTEEEEEEEC-CTT-CSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECC-CCC-CCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEE
Confidence 45677666778999999985 222 2245679999988764 222221 1223345566665555 347999999
Q ss_pred EEcCCCCC
Q psy12426 485 AVNKGGPG 492 (616)
Q Consensus 485 a~n~~G~g 492 (616)
+.+..|.-
T Consensus 80 ~ss~~~~i 87 (99)
T PF09240_consen 80 GSSSAGSI 87 (99)
T ss_dssp EEETTEEE
T ss_pred eccCCCcc
Confidence 98887753
No 427
>PF14292 SusE: SusE outer membrane protein
Probab=73.43 E-value=33 Score=27.32 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=40.2
Q ss_pred EEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEe---ecCCccEEEcC-----------CCCCCCeEEEEE
Q psy12426 418 VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI---VPANITATSVP-----------DLKEGEEYEFRV 483 (616)
Q Consensus 418 ~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~---~~~~~~~~~l~-----------~L~p~t~Y~~~v 483 (616)
+.......+++.|+++......-...|.|+....++++..... ......++.++ ++.|+....+.+
T Consensus 39 L~~~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~~l~~ 118 (122)
T PF14292_consen 39 LDEASDNAVTFTWTAADYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAGTLYW 118 (122)
T ss_pred ecccCCceEEEEEECCccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceEEEEE
Confidence 3334567899999987653331245699999875543332211 11112333332 578888888877
Q ss_pred EEE
Q psy12426 484 IAV 486 (616)
Q Consensus 484 ~a~ 486 (616)
|..
T Consensus 119 rV~ 121 (122)
T PF14292_consen 119 RVK 121 (122)
T ss_pred EEE
Confidence 763
No 428
>PHA03042 CD47-like protein; Provisional
Probab=71.41 E-value=29 Score=31.56 Aligned_cols=70 Identities=23% Similarity=0.197 Sum_probs=43.3
Q ss_pred EEcCCeEEEEEEEeee-----cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426 228 VRAGSNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302 (616)
Q Consensus 228 v~~g~~~~l~c~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 302 (616)
..-++++.+.|.+..- ....++|..++..+-..... +..+|.+..-. .-.|+|+|.|.+.........
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~I 100 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTI 100 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEeccc-cCCCceeEEEeecccCccEEE
Confidence 3456788899988653 45579999998875422111 12355554433 348999999987554444333
Q ss_pred EE
Q psy12426 303 KV 304 (616)
Q Consensus 303 ~l 304 (616)
.+
T Consensus 101 eL 102 (286)
T PHA03042 101 EL 102 (286)
T ss_pred EE
Confidence 33
No 429
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=70.28 E-value=4.1 Score=41.53 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=0.0
Q ss_pred cccCCCeEEEEEEEEecCcCC
Q psy12426 372 NLIEGHDYNFRVKAVNKIGES 392 (616)
Q Consensus 372 ~L~~~~~y~~~v~a~n~~g~~ 392 (616)
.|.+|..|.|++.+.+..+..
T Consensus 268 ~l~~g~~Y~~~l~v~~~~~~~ 288 (440)
T PF02010_consen 268 VLEPGSTYTFRLTVTDSSGSS 288 (440)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 689999999999998876654
No 430
>PHA03273 envelope glycoprotein C; Provisional
Probab=69.87 E-value=1.2e+02 Score=30.16 Aligned_cols=80 Identities=13% Similarity=-0.039 Sum_probs=53.5
Q ss_pred CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC---cee
Q psy12426 172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI---PTK 248 (616)
Q Consensus 172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~---~~~ 248 (616)
..|.|..|+..++|.|.-...+..|..... ..+.+. ...+|.+.+ ...-+..|+...-.|.+...=+ ..+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~---~~VtV~-~yr~Psvsv---~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~ 270 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNS---TSVTVS-TYNAPLVDL---SVHPSLKGENYRAVCVVASYFPHSSVKL 270 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeee---eEEEEE-EecCCcccc---cCCccccCCCceEEEEeeeecCCCceEE
Confidence 569999999999999986655544432211 112221 134555432 2334678999999999987633 379
Q ss_pred EEEECCeeec
Q psy12426 249 EWLCNDITII 258 (616)
Q Consensus 249 ~W~~~~~~~~ 258 (616)
.|++|+..+.
T Consensus 271 rWf~dg~~V~ 280 (486)
T PHA03273 271 RWYKNAKEVD 280 (486)
T ss_pred EEEeCCeecc
Confidence 9999999876
No 431
>PHA03052 Hypothetical protein; Provisional
Probab=69.64 E-value=25 Score=24.15 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=27.2
Q ss_pred cceEEEcCCeEEEEEEEeeec---CceeEEEECCeee
Q psy12426 224 SDIKVRAGSNFEFDINVIGEP---IPTKEWLCNDITI 257 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~~p---~~~~~W~~~~~~~ 257 (616)
..+.+..|+.+++.|.+.-.+ .+.+.|..|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 567788999999999997433 4578899998876
No 432
>KOG1225|consensus
Probab=68.45 E-value=14 Score=37.64 Aligned_cols=110 Identities=18% Similarity=0.119 Sum_probs=71.0
Q ss_pred cccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcce
Q psy12426 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPIS 442 (616)
Q Consensus 363 ~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~ 442 (616)
.......+..|.+++.|..++.+.-..-.+.+...+... .-..+..+.+.....+++.+.|..|... ..
T Consensus 415 ~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~g~~~v~~~~~~s~e~~g~~~s~~----~~ 483 (525)
T KOG1225|consen 415 GDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKDKSETT-------VLCWNGGLCVDGETESSLEVGGPCPSSG----TC 483 (525)
T ss_pred cceeeeeeeeecCCcceeeehhhhhhhhccCCcccccce-------EeecCCceeeeeeeeccccccCCCCCcc----cc
Confidence 345667888899999999998886433222222111111 1234667888888999999999977542 45
Q ss_pred eEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEE
Q psy12426 443 QYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRV 483 (616)
Q Consensus 443 ~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v 483 (616)
.+.+.+.....+-......+.+...+..++|.|++.|.+.+
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 484 GWEVRCGPCGNDGGVNAEPPPECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred ceEEEeeecCcccccccCCCCCCCCCCccCcccccceeccc
Confidence 57777733322212222333367889999999999998764
No 433
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=61.64 E-value=2.4e+02 Score=30.66 Aligned_cols=121 Identities=14% Similarity=0.181 Sum_probs=64.5
Q ss_pred ceEEEecCCCCCCcEEEEEEEEcCCCCcee---eEEEEEecCCCCCCCCcccee-ecCCeEEEEEeCCCCCCCCceEEEE
Q psy12426 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKG---TAKVTVLDIPSPPEGPLKPSN-ITKSSCNLEWRAPRDDGGTDILHYV 346 (616)
Q Consensus 271 ~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~---~~~l~v~~~p~~p~~~~~~~~-~~~~~~~l~W~~~~~~~~~~i~~y~ 346 (616)
...+.+.++-. -.|..++.|.|..|.... +....+..+..||..++.... ...-.+.+.|-.|. +...+..-.
T Consensus 659 ~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it~~~~l~v~dPt--~~~d~~~se 735 (952)
T COG4733 659 AAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIITLVIRLVVGDPT--GAVDITSTE 735 (952)
T ss_pred ccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEEeeeeEEEecCC--cceEEeeee
Confidence 44677888876 567777888887776532 334444444444433332222 22335778887553 122222222
Q ss_pred EEEEeCCCCCE--EEccccccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426 347 VEKMDMETGRW--VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394 (616)
Q Consensus 347 v~~~~~~~~~~--~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~ 394 (616)
+++........ ..........+.-.+|.++..|.|+++++|..|...+
T Consensus 736 i~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~ 785 (952)
T COG4733 736 IRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDK 785 (952)
T ss_pred eeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeeccccccccc
Confidence 33332222111 0111111112222689999999999999999998654
No 434
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=60.95 E-value=35 Score=32.55 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=16.7
Q ss_pred eEEEEEEEee-ecC-CeeeeeeC
Q psy12426 19 TLKFDANIIG-EPV-PHVDWRAG 39 (616)
Q Consensus 19 ~v~l~C~~~g-~P~-p~v~W~~~ 39 (616)
.++|+|.|.| .|. ..++|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999999 444 35789999
No 435
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=59.33 E-value=70 Score=23.65 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=35.6
Q ss_pred eEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426 233 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 300 (616)
Q Consensus 233 ~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~ 300 (616)
...|.+.+.+. ...+.|+.|+..+...... ..+.+ .+...|.|++.+.+..|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 44556666666 4589999999987322211 12222 234679999999988887643
No 436
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=57.70 E-value=2.7e+02 Score=29.84 Aligned_cols=244 Identities=12% Similarity=0.097 Sum_probs=127.6
Q ss_pred ceEEEcCCeEEEEEEEeeecCceeEEE--ECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEE--EcCCCC---
Q psy12426 225 DIKVRAGSNFEFDINVIGEPIPTKEWL--CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV--KNSWGT--- 297 (616)
Q Consensus 225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~--~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a--~n~~g~--- 297 (616)
.-....|+.+.+.|.+.+.....+.+. ++|..+... .-+....+.+ .|...|.|++.+ .+....
T Consensus 395 ~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~------~Y~~~~~~~f---~P~~~G~Y~IeV~vKdk~S~~~y 465 (667)
T PRK14081 395 GKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKI------DYGKNNWVNF---IPEEKGNYELEVRVKDKYSDKEY 465 (667)
T ss_pred CCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEe------ecccccEEEE---EECCCeeEEEEEEEecccCchhc
Confidence 345667999999999988765544432 355543211 1111113333 335577777655 443332
Q ss_pred -ceeeEEEEEecCCCCCCCC----ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc-cccceEEec
Q psy12426 298 -DKGTAKVTVLDIPSPPEGP----LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-VSGTYTRAE 371 (616)
Q Consensus 298 -~~~~~~l~v~~~p~~p~~~----~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~i~ 371 (616)
....+.+.|.+....-... ....-.-+..+.+.... ..+... .+++.-...+.|..... .....+.+.
T Consensus 466 D~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~--~~~k~v----~y~y~~~~NG~~v~~t~Ys~~~~ysf~ 539 (667)
T PRK14081 466 DAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVII--QNTKDV----LIKYILKINGHKVEETDYIKNKKYKFI 539 (667)
T ss_pred ccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEE--eCCCeE----EEEEEEEECCEEEEEeeccccceEEEe
Confidence 2344555555422111110 11112345556665542 122222 33333344567776655 556667777
Q ss_pred cccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEec---CCeEEEEecCCCCCCCCcceeEEEEE
Q psy12426 372 NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWG---KDHVDLEWTPPKKDGGSPISQYIIEK 448 (616)
Q Consensus 372 ~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~---~~~v~l~W~~p~~~~~~~i~~Y~i~~ 448 (616)
....| .|.+.|.|.|.......-. ...+.+.. ..+.|+.+..+.... .-.-.++|.. ...+|..+ -|+.+.
T Consensus 540 P~~~G-kY~I~V~aKn~~s~~~~D~-~k~v~~~V--~e~~pi~nt~~~~~~~~~~~n~~~t~~~-~~~gg~~v-~Yef~v 613 (667)
T PRK14081 540 PKCSG-KYTIEVLAKNIKSTEEYDS-KKEVKFYV--REALPITNTKIKTSKKKFKCNEEVTFSV-KSEGGKDV-CYEFYI 613 (667)
T ss_pred ecCCc-eEEEEEEEccccccccccc-ceEEEEEE--cCCCCceeeEEEeecceEEcCCeEEEEE-EccCCCcE-EEEEEE
Confidence 65555 7899999988776543321 12222221 133344444433221 1123444543 22344444 588888
Q ss_pred eeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCC
Q psy12426 449 KPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPG 492 (616)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g 492 (616)
...+ .|...... +....|++.....| .|.+.|.+....+..
T Consensus 614 ~~~g-~w~~vq~y-s~k~~ysf~p~~~g-~Y~ilvl~ks~~~k~ 654 (667)
T PRK14081 614 MEKG-EWKLVQKY-SRKNYYSFMPFNKG-KYKVLVLCKSYYKKC 654 (667)
T ss_pred EECC-cEEEEeec-cccCceEEEeccCC-cEEEEEEEecccccc
Confidence 7755 78877654 34567888877777 699988888766543
No 437
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=53.92 E-value=24 Score=26.33 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=17.1
Q ss_pred CeEEEEEE-EeeecCCeeeeee
Q psy12426 18 TTLKFDAN-IIGEPVPHVDWRA 38 (616)
Q Consensus 18 ~~v~l~C~-~~g~P~p~v~W~~ 38 (616)
+.+.-+|. +.|.|+..|+|.-
T Consensus 21 ~v~VA~CiSa~GrPpa~ItW~t 42 (98)
T cd05890 21 KMLVATCVSANGKPPSVVRWDT 42 (98)
T ss_pred eEEEEEEEcCCCcCCcEeEEEc
Confidence 34556998 8999999999973
No 438
>PHA02633 hypothetical protein; Provisional
Probab=51.76 E-value=19 Score=24.31 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=20.4
Q ss_pred CCeEEeecccCCCeEEEEEEEEeCC
Q psy12426 171 TPKGKVLDLIEGNQYEFRVLAVNKG 195 (616)
Q Consensus 171 ~~~l~i~~l~~~~~~~y~c~a~n~~ 195 (616)
...|-|-+...+|+|.|.|+..|..
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t 41 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNET 41 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCC
Confidence 3467788888999999999998653
No 439
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=49.87 E-value=27 Score=26.71 Aligned_cols=30 Identities=7% Similarity=-0.004 Sum_probs=24.5
Q ss_pred CCCCCeEEeecccCCCeEEEEEEEEeCCCC
Q psy12426 168 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGP 197 (616)
Q Consensus 168 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~ 197 (616)
...+..|.|+.+++.|+|.|...+.+..|.
T Consensus 67 ~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~ 96 (108)
T PF11465_consen 67 TSENLALLIKAAQPQDSGLYCLEVTNESGK 96 (108)
T ss_dssp ETTTTEEEESS-SGGG-EEEEEEEEETTSC
T ss_pred eccCceEEEeecCcccCceEEEEEEcCCCc
Confidence 456678999999999999999999998775
No 440
>KOG1948|consensus
Probab=49.21 E-value=4e+02 Score=29.32 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=50.7
Q ss_pred cCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccC
Q psy12426 135 GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV 214 (616)
Q Consensus 135 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~ 214 (616)
|.|..++-++-..+ +............+..|+|.+|.|+..|..++.+.-+....+.+.+.. +.++...+
T Consensus 918 Gdp~~gVaieA~sd---------n~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~~n~~iers~P~s-~tv~vgne 987 (1165)
T KOG1948|consen 918 GDPMKGVAIEALSD---------NCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYADNSPIERSFPRS-FTVSVGNE 987 (1165)
T ss_pred CCcccCeEEEEecC---------CCCccccccccccCCcEEEeccCCCceEEEEEeeccCCCcccccCCce-EEEEeccc
Confidence 77888887776211 111222223445667999999999999888887763222222222211 11111000
Q ss_pred CCceeccCCcceEEEcCCeEEEEEEEeeecC
Q psy12426 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245 (616)
Q Consensus 215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~ 245 (616)
- +....-+....-....+.|.+.+...
T Consensus 988 --D--v~glnf~af~q~kttdit~~V~~~~n 1014 (1165)
T KOG1948|consen 988 --D--VKGLNFMAFIQAKTTDITVEVGMDTN 1014 (1165)
T ss_pred --c--cCCceEEEEeccceEEEEEEEccccc
Confidence 0 11112233444556778888876643
No 441
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=48.27 E-value=5.9 Score=40.33 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred CeEEe--ecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCc--ceEEEcCCeEEEEEEEeee----
Q psy12426 172 PKGKV--LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLS--DIKVRAGSNFEFDINVIGE---- 243 (616)
Q Consensus 172 ~~l~i--~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~--~~~v~~g~~~~l~c~~~~~---- 243 (616)
..+.| ..+.++..|.|++.+....+...... ..+.+.. ..+|.+...... ...+..++.+.|...+...
T Consensus 148 ~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~--~~v~v~~-~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~ 224 (440)
T PF02010_consen 148 SSLTIPASTLSPGSTYTFTLTVSKGSRSSSSAS--QTVTVVS-GDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDS 224 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEhHHcCCCceEEEEEEEEeCCCCceeeE--EEEEecc-CCCCceeEccccccccccCCCCCEEEEEEEeCCCCcC
Confidence 34555 56788888999999877654222222 2222221 234443322222 2236677766666555532
Q ss_pred cCceeEEEE-----C---CeeecccCcEEEEecCCceEEEec--CCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecCCCC
Q psy12426 244 PIPTKEWLC-----N---DITIISKDRFKIVNDDKSTKLKVF--DSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPSP 312 (616)
Q Consensus 244 p~~~~~W~~-----~---~~~~~~~~~~~~~~~~~~~~l~i~--~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~ 312 (616)
....+.|.. . ...+.... ...........|.|. .++.+..|.+++.+.+..+.. ..+..+.+..+|..
T Consensus 225 ~~~~y~Wsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~ 303 (440)
T PF02010_consen 225 SNVSYSWSLFSLDGVSDSNSELPDWS-SMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSG 303 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEEEeeccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345788887 0 11111000 001111122355555 466677888888888866554 44555555444432
Q ss_pred CCCCcccee----ecCCeEEEEEeCCCCCCCCceEEEEEEE
Q psy12426 313 PEGPLKPSN----ITKSSCNLEWRAPRDDGGTDILHYVVEK 349 (616)
Q Consensus 313 p~~~~~~~~----~~~~~~~l~W~~~~~~~~~~i~~y~v~~ 349 (616)
-. ..+.. ...+.+.+.|..-.+.. ..+.|.+.+
T Consensus 304 g~--c~v~P~~G~al~T~Ft~~c~~~~d~~--~pL~Y~f~~ 340 (440)
T PF02010_consen 304 GS--CSVSPSSGYALETTFTITCSGWTDDD--QPLTYQFYY 340 (440)
T ss_dssp -----------------------------------------
T ss_pred cc--cccccccccccccccccccccccccc--ccccccccc
Confidence 21 11211 22344556665322221 256677776
No 442
>PHA03189 UL14 tegument protein; Provisional
Probab=46.60 E-value=42 Score=31.05 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=18.7
Q ss_pred CCceEecCCCeEEEEEEEeeecCCe
Q psy12426 9 LGDIKLSAGTTLKFDANIIGEPVPH 33 (616)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~g~P~p~ 33 (616)
|....+-+|+.|++.|.+-..--|.
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPe 83 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPE 83 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCce
Confidence 6677899999999999854443343
No 443
>KOG1225|consensus
Probab=45.21 E-value=49 Score=33.93 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=74.4
Q ss_pred CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC-C
Q psy12426 412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK-G 489 (616)
Q Consensus 412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~-~ 489 (616)
+|..+.+..-+..++-+.|.. . .....|...|...+. .......+.+....+.+..|.|++.|..+++++-. .
T Consensus 368 ~~~~~~~~~cs~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 442 (525)
T KOG1225|consen 368 DPSLLLITECSPPSLCIAGVG-R----RRVTHCAGTYCPLGESGGDLQGRVPGDANSVDIQGLEPGDEYNCSVNTVAANI 442 (525)
T ss_pred CchhhcccccCCCceeecccc-c----cccccccccccccccCCCccceeeccceeeeeeeeecCCcceeeehhhhhhhh
Confidence 333444444566677777761 1 123334443333221 11124566777889999999999999999998744 3
Q ss_pred CCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEeec
Q psy12426 490 GPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVD 569 (616)
Q Consensus 490 G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 569 (616)
|..+...... .....|..+.+...+
T Consensus 443 ~~~~~~~~~~-------------------------------------------------------~~~~~~g~~~v~~~~ 467 (525)
T KOG1225|consen 443 GSLPKDKSET-------------------------------------------------------TVLCWNGGLCVDGET 467 (525)
T ss_pred ccCCcccccc-------------------------------------------------------eEeecCCceeeeeee
Confidence 3333222111 223456667788899
Q ss_pred CCcEEEEeeCCCCCCCCceeeeEEEE
Q psy12426 570 KDHIKIKWQQPISNGGSAIKGYEVER 595 (616)
Q Consensus 570 ~~~i~l~W~~p~~~~~~~i~~Y~i~~ 595 (616)
.+++.+.|..|.. ...++.+.|
T Consensus 468 ~~s~e~~g~~~s~----~~~~~~~~~ 489 (525)
T KOG1225|consen 468 ESSLEVGGPCPSS----GTCGWEVRC 489 (525)
T ss_pred eccccccCCCCCc----cccceEEEe
Confidence 9999999999863 356888888
No 444
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=44.32 E-value=1e+02 Score=29.88 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=55.2
Q ss_pred CCCCceEecCCCeEEEEEEEe--eecC-CeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccc--
Q psy12426 7 RHLGDIKLSAGTTLKFDANII--GEPV-PHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ-- 80 (616)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~--g~P~-p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~-- 80 (616)
.+...+.+..|.+|.|.|..+ |+-. ..++|+-.|-++.. -|.|.-.---..+..+. ..++..+.
T Consensus 269 k~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~----------~~~~i~~~~~ 338 (500)
T PHA02914 269 KKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAED----------DDFMISAHAN 338 (500)
T ss_pred cccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccC----------CceEEEEecc
Confidence 334566778899999999865 4443 46899988876642 34443221000000110 00111111
Q ss_pred --cCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426 81 --TEGDTPKGKVLDLIEGNQYEFRVLAVNK 108 (616)
Q Consensus 81 --~~~~~~~l~i~~l~~~~~~~y~c~a~n~ 108 (616)
......+|+|.+++-...|=|.|.|..+
T Consensus 339 ~s~dlk~STLTIkka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 339 YSDDLKNSTLTIKKAHINNAGCYEAQAFMG 368 (500)
T ss_pred cccchhhceEEeeeEEEEcCCceEEEEecC
Confidence 1344578999999999999999999843
No 445
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=43.05 E-value=39 Score=30.69 Aligned_cols=22 Identities=14% Similarity=-0.025 Sum_probs=20.2
Q ss_pred CCceEecCcccCCeEEEEEEEE
Q psy12426 85 TPKGKVLDLIEGNQYEFRVLAV 106 (616)
Q Consensus 85 ~~~l~i~~l~~~~~~~y~c~a~ 106 (616)
++.|.+.+..+..+|.|.|...
T Consensus 36 TG~L~~~~F~esmSG~YTCtLs 57 (271)
T PF07354_consen 36 TGKLMFKNFQESMSGSYTCTLS 57 (271)
T ss_pred CceEEeeccccccCCceEEEEE
Confidence 6789999999999999999987
No 446
>PLN02533 probable purple acid phosphatase
Probab=42.85 E-value=93 Score=31.45 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=16.9
Q ss_pred ceEEeccccCCCeEEEEEE
Q psy12426 366 TYTRAENLIEGHDYNFRVK 384 (616)
Q Consensus 366 ~~~~i~~L~~~~~y~~~v~ 384 (616)
....|.+|.|++.|.|+|-
T Consensus 103 H~v~l~~L~p~T~Y~Yrvg 121 (427)
T PLN02533 103 NDVVIGPLKPNTVYYYKCG 121 (427)
T ss_pred EEEEeCCCCCCCEEEEEEC
Confidence 5678999999999999994
No 447
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=41.79 E-value=1.5e+02 Score=22.22 Aligned_cols=81 Identities=9% Similarity=0.010 Sum_probs=46.5
Q ss_pred CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 302 (616)
|....|..|+.+.+.|..+-..+..+-|.-. -.+..+.....=..+.+.|+.. .....|.+.....+...++
T Consensus 10 P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~------L~k~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~~~~~ 81 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCSTSCPQPEKIGLETS------LSKTELDSGPQWKAFQLSNVTE--DSSPLCFFNCSGEQSSASA 81 (91)
T ss_dssp SSEEEEETTEEEEEEEEESSSS-SEEEEESS------SEEEEEEEETTEEEEEEEEE-S--CEEEEEEEEETTEEEEEEE
T ss_pred CCccEECCCCCEEEEEcCCCCCCCcceEEEe------cCCcccCCCCcEEEEEEEcccc--CCeEEEEEEcCCeEEEeEE
Confidence 4567899999999999886433323333211 0111222222233677888885 3566788877544557778
Q ss_pred EEEEecCCC
Q psy12426 303 KVTVLDIPS 311 (616)
Q Consensus 303 ~l~v~~~p~ 311 (616)
.+++...|.
T Consensus 82 ~ItVY~~Pe 90 (91)
T PF03921_consen 82 NITVYKPPE 90 (91)
T ss_dssp EEEEEB--S
T ss_pred eeEEeCCCC
Confidence 888876653
No 448
>KOG1948|consensus
Probab=41.63 E-value=5.2e+02 Score=28.51 Aligned_cols=22 Identities=0% Similarity=-0.215 Sum_probs=18.2
Q ss_pred ceEEEecCCCCCCcEEEEEEEE
Q psy12426 271 STKLKVFDSKRGDSGIYTLAVK 292 (616)
Q Consensus 271 ~~~l~i~~l~~~~~g~y~c~a~ 292 (616)
...++|.+|.++..|..++.+.
T Consensus 945 nG~yRiRGL~Pdc~Y~V~vk~~ 966 (1165)
T KOG1948|consen 945 NGTYRIRGLLPDCEYQVHVKSY 966 (1165)
T ss_pred CCcEEEeccCCCceEEEEEeec
Confidence 3489999999998888777766
No 449
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=40.22 E-value=23 Score=24.85 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=12.8
Q ss_pred CCCCCCeEEEEEEEE
Q psy12426 472 DLKEGEEYEFRVIAV 486 (616)
Q Consensus 472 ~L~p~t~Y~~~v~a~ 486 (616)
.|+||..|.|.|+|.
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 378999999999983
No 450
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=39.12 E-value=1.6e+02 Score=21.76 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=35.8
Q ss_pred CCeEEEEecCCCCCCCCcceeEEEEEeeCCC----CceEeE-eecC--CccEEEc-CCCCCCCeEEEEEEE
Q psy12426 423 KDHVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKAC-IVPA--NITATSV-PDLKEGEEYEFRVIA 485 (616)
Q Consensus 423 ~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~----~~~~~~-~~~~--~~~~~~l-~~L~p~t~Y~~~v~a 485 (616)
...+.|+|.....+ ...|.|....... ...... .++. ....+++ .+|.++..|.|++..
T Consensus 12 g~~~~I~W~~~~~~----~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 12 GQPITITWTSDGTD----PGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CCcEEEEEeCCCCC----CcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 36799999953222 3557887766554 222221 2222 3445666 569999999988883
No 451
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=38.79 E-value=48 Score=22.95 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=21.0
Q ss_pred eEecCCCeEEEEEEE-eeecCCeeeeeeCC
Q psy12426 12 IKLSAGTTLKFDANI-IGEPVPHVDWRAGG 40 (616)
Q Consensus 12 ~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~ 40 (616)
..+..|+.|.|.... .|.+. .++|..++
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~-~y~W~fgd 34 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPV-TYSWDFGD 34 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSEC-EEEEE-SS
T ss_pred CEEcCCCEEEEEEEccCCCCe-EEEEEECC
Confidence 457889999999987 33333 79999998
No 452
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=37.76 E-value=1.1e+02 Score=29.79 Aligned_cols=120 Identities=16% Similarity=0.244 Sum_probs=69.2
Q ss_pred cceEEEcCCeEEEEEEEee---ecCceeEEEECCeeecc-----------------cCcEEEEe------cCCceEEEec
Q psy12426 224 SDIKVRAGSNFEFDINVIG---EPIPTKEWLCNDITIIS-----------------KDRFKIVN------DDKSTKLKVF 277 (616)
Q Consensus 224 ~~~~v~~g~~~~l~c~~~~---~p~~~~~W~~~~~~~~~-----------------~~~~~~~~------~~~~~~l~i~ 277 (616)
..+.+..|.++.+.|..+- .......|.-.+-++.+ +..+.+.. +-..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 4566778999999999875 34557889876655321 11122211 1124689999
Q ss_pred CCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEE-eCCCCC
Q psy12426 278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM-DMETGR 356 (616)
Q Consensus 278 ~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~-~~~~~~ 356 (616)
++.-...|-|.|.|..+.-..... .+. .-.+.+.+.|..-. ++...+..|..++. ......
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~----------------~Cl-~V~d~V~f~W~~e~-~n~T~V~Cyv~sy~~kp~si~ 413 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECR----------------HCF-KVADHVFFKWNTEG-DNETKVACYAAQYDMQPFSIL 413 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhh----------------hhe-EeccEEEEEEEecc-CceEEEEEEEEecccCCceeE
Confidence 999999999999997642111110 111 12457888897322 23334555665652 222334
Q ss_pred EEEcc
Q psy12426 357 WVPMG 361 (616)
Q Consensus 357 ~~~~~ 361 (616)
|...+
T Consensus 414 wkvnG 418 (500)
T PHA02914 414 WKSNG 418 (500)
T ss_pred EEEcc
Confidence 55443
No 453
>PHA03270 envelope glycoprotein C; Provisional
Probab=37.49 E-value=1.7e+02 Score=29.00 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=29.3
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEee-ecC--CeeeeeeCCeeee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIG-EPV--PHVDWRAGGNPLN 44 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P~--p~v~W~~~~~~l~ 44 (616)
+|.++. ...-+.+|+...-.|.+.. .|. ..+.|++||.++.
T Consensus 221 ~Psvsv---~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~ 264 (466)
T PHA03270 221 RPSLSI---RPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF 264 (466)
T ss_pred CCcccc---cCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 355553 3445789999999999554 554 2489999999774
No 454
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=34.66 E-value=82 Score=22.39 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=21.5
Q ss_pred cCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426 462 PANITATSVPDLKEGEEYEFRVIAV 486 (616)
Q Consensus 462 ~~~~~~~~l~~L~p~t~Y~~~v~a~ 486 (616)
.+....|.=.+|.+|..|.|+|+|.
T Consensus 25 ~G~~R~F~T~~L~~G~~y~Y~v~a~ 49 (75)
T TIGR03000 25 TGTVRTFTTPPLEAGKEYEYTVTAE 49 (75)
T ss_pred CccEEEEECCCCCCCCEEEEEEEEE
Confidence 3556788889999999999999994
No 455
>PHA03273 envelope glycoprotein C; Provisional
Probab=34.19 E-value=55 Score=32.46 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=29.6
Q ss_pred CCccCCCCCCceEecCCCeEEEEEEEee-ecC--CeeeeeeCCeeee
Q psy12426 1 APHIDRRHLGDIKLSAGTTLKFDANIIG-EPV--PHVDWRAGGNPLN 44 (616)
Q Consensus 1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P~--p~v~W~~~~~~l~ 44 (616)
+|.+.. ...-|.+|+...-.|.+.. .|. ..+.|++||.++.
T Consensus 237 ~Psvsv---~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 237 APLVDL---SVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred CCcccc---cCCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 455553 3445789999999999654 554 2589999998775
No 456
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=33.82 E-value=36 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=21.8
Q ss_pred EEEEEEeeecCCeeeeeeCCeeee-----------eccceEEEeec
Q psy12426 21 KFDANIIGEPVPHVDWRAGGNPLN-----------LRPIWEKCAQT 55 (616)
Q Consensus 21 ~l~C~~~g~P~p~v~W~~~~~~l~-----------~~G~Y~C~a~n 55 (616)
+|+|.....-+ ++||-||-.|- ..++|.|+-..
T Consensus 2 tltC~s~~sLP--iswYcN~TRLlRlt~~Tlt~~~ltcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSNASLP--ISWYCNGTRLLRLTQQTLTVVTLTCNFTCVGQS 45 (71)
T ss_pred ceecCCCCCCc--ccEEECCceeeeecCCeEeeeeeeEEeeecCCC
Confidence 57886543333 88999887552 17888887544
No 457
>PHA03240 envelope glycoprotein M; Provisional
Probab=32.85 E-value=48 Score=28.78 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=21.6
Q ss_pred ceEecCCCeEEEEEEEeeecCCeeeeee
Q psy12426 11 DIKLSAGTTLKFDANIIGEPVPHVDWRA 38 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~ 38 (616)
.+++++|..|+|.-.-.-.|.-.+.||+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEe
Confidence 5678999999998753334666899999
No 458
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=32.78 E-value=65 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=20.6
Q ss_pred ccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426 465 ITATSVPDLKEGEEYEFRVIAVNK 488 (616)
Q Consensus 465 ~~~~~l~~L~p~t~Y~~~v~a~n~ 488 (616)
...|.+.+|.||++|.|+-...+.
T Consensus 101 lsaYqVtNL~pGTkY~isY~Vtkg 124 (184)
T PF07353_consen 101 LSAYQVTNLQPGTKYYISYLVTKG 124 (184)
T ss_pred ceeEEeeccCCCcEEEEEEEEecC
Confidence 458999999999999999888655
No 459
>PHA03271 envelope glycoprotein C; Provisional
Probab=32.30 E-value=61 Score=31.58 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred ceEecCCCeEEEEEEEee-ecC--CeeeeeeCCeeee
Q psy12426 11 DIKLSAGTTLKFDANIIG-EPV--PHVDWRAGGNPLN 44 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g-~P~--p~v~W~~~~~~l~ 44 (616)
..-+.+|+...-.|.+.. .|+ ..+.|++||.++.
T Consensus 254 a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~ 290 (490)
T PHA03271 254 APPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIAT 290 (490)
T ss_pred CCccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 344788999999999654 554 2489999998764
No 460
>PHA03189 UL14 tegument protein; Provisional
Probab=31.01 E-value=3.2e+02 Score=25.66 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=39.7
Q ss_pred CcceEEEcCCeEEEEEEEeeec--CceeE-----EEE----------CCeeecc-------cCcEEEEecCCceEEEe-c
Q psy12426 223 LSDIKVRAGSNFEFDINVIGEP--IPTKE-----WLC----------NDITIIS-------KDRFKIVNDDKSTKLKV-F 277 (616)
Q Consensus 223 ~~~~~v~~g~~~~l~c~~~~~p--~~~~~-----W~~----------~~~~~~~-------~~~~~~~~~~~~~~l~i-~ 277 (616)
+..+.+..|+.+++.|.+..+. ...|. |.- .|..+.+ +.+..+...+-...|++ .
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 3445677899999999886553 32221 100 1111111 12223333333333333 2
Q ss_pred CCCCCCcEEEEEEEEcCCC
Q psy12426 278 DSKRGDSGIYTLAVKNSWG 296 (616)
Q Consensus 278 ~l~~~~~g~y~c~a~n~~g 296 (616)
++..+.+|.|.|...|...
T Consensus 139 ~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEEecccceEEEEeccccc
Confidence 4566789999999999543
No 461
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=29.75 E-value=1.8e+02 Score=27.93 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=17.0
Q ss_pred eEEEEEEEeeec--CceeEEEEC
Q psy12426 233 NFEFDINVIGEP--IPTKEWLCN 253 (616)
Q Consensus 233 ~~~l~c~~~~~p--~~~~~W~~~ 253 (616)
.+.|+|.+.|-= ...+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 578999998873 347899999
No 462
>KOG4228|consensus
Probab=29.71 E-value=93 Score=34.83 Aligned_cols=109 Identities=20% Similarity=0.099 Sum_probs=66.6
Q ss_pred EEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEe
Q psy12426 381 FRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI 460 (616)
Q Consensus 381 ~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~ 460 (616)
|.|.+....|.+.. ...+.+. .-|..+..+.+......++.+.|..... ....|.+.++...+.+... .
T Consensus 2 Y~~~~~~~~~~~~~---~~~v~v~---~~p~~~~~~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~~~~~-~ 70 (1087)
T KOG4228|consen 2 YTCLARSGLGPGEL---ITYVRVN---GGPPGPSTPNVTGSTATSWVQAELLGST----WPNYYQVIFKALSSGYGYI-D 70 (1087)
T ss_pred eeeeecccCCCccc---eEEEEec---CCCCCCCCcccccccccceeehhhccCC----ChhhhheeeeEeccCccee-e
Confidence 45666666665543 2223332 3344555666777778888899985432 3555777776655432211 1
Q ss_pred ecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEe
Q psy12426 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503 (616)
Q Consensus 461 ~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~ 503 (616)
. .....+....+.+...|.+ .+.|..|.+.++.+....+.
T Consensus 71 ~-~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~ 110 (1087)
T KOG4228|consen 71 V-DLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTG 110 (1087)
T ss_pred c-cceeecccCCCCCcchhhh--hhcccccccccccccCCccc
Confidence 1 2234577777888888877 88899999888876655443
No 463
>KOG1026|consensus
Probab=28.89 E-value=61 Score=34.90 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=28.0
Q ss_pred eEecCCCeEEEEEEEeeecCCeeeeeeCCeeee
Q psy12426 12 IKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44 (616)
Q Consensus 12 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~ 44 (616)
..+..|..+.+.|.+.|.|.|.+.|+.+.....
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~ 234 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASS 234 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeeccccccc
Confidence 356789999999999999999999998775443
No 464
>PHA03286 envelope glycoprotein E; Provisional
Probab=28.62 E-value=2.2e+02 Score=28.39 Aligned_cols=32 Identities=9% Similarity=-0.055 Sum_probs=26.2
Q ss_pred CCCeEEeecccCCCeEEEEEEEEeCCCCCCCC
Q psy12426 170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 201 (616)
Q Consensus 170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s 201 (616)
....|.|.+.++...|.|.....|+.|....+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~ 156 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMD 156 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEE
Confidence 34579999999999999999999887765543
No 465
>PHA03269 envelope glycoprotein C; Provisional
Probab=28.56 E-value=74 Score=31.80 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=26.4
Q ss_pred ceEecCCCeEEEEEEEee-ecC--CeeeeeeCCeeee
Q psy12426 11 DIKLSAGTTLKFDANIIG-EPV--PHVDWRAGGNPLN 44 (616)
Q Consensus 11 ~~~v~~g~~v~l~C~~~g-~P~--p~v~W~~~~~~l~ 44 (616)
..-|.+|+...-.|.+.. .|. ..+.|++||.++.
T Consensus 336 p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~ 372 (566)
T PHA03269 336 GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIG 372 (566)
T ss_pred CCccccCCCceEEEEeeeecCCCceEEEEEeCCcccC
Confidence 445789999999999654 554 2589999998776
No 466
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=26.84 E-value=4.6e+02 Score=29.32 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=27.4
Q ss_pred CCCCCe-EE-eecCCcEEEEeeCCCC-CCCCceeeeEEEEe
Q psy12426 559 KPSKPE-AT-DVDKDHIKIKWQQPIS-NGGSAIKGYEVERR 596 (616)
Q Consensus 559 ~P~~~~-~~-~~~~~~i~l~W~~p~~-~~~~~i~~Y~i~~~ 596 (616)
||..++ +. .....+|.|+|..|-+ -..|...+|+|.|.
T Consensus 755 PP~rItDL~~~~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s 795 (863)
T TIGR00868 755 PPSKITDLEAGFQGDNIILTWTAPGDVLDHGRADRYIIRIS 795 (863)
T ss_pred CCccceeeEEeecCCEEEEEeeCCCccCCCCccceEEEEec
Confidence 555544 21 3566779999999874 24788999999985
No 467
>PHA03112 IL-18 binding protein; Provisional
Probab=26.78 E-value=74 Score=25.90 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.7
Q ss_pred eEecCCCeEEEEEEEeee-cC-CeeeeeeCC
Q psy12426 12 IKLSAGTTLKFDANIIGE-PV-PHVDWRAGG 40 (616)
Q Consensus 12 ~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~ 40 (616)
+...+|+++.|+|.+-+. |. ..+.|.+++
T Consensus 33 vp~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 33 IPTKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 345779999999998765 64 568999776
No 468
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=23.28 E-value=1.9e+02 Score=31.04 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCC-----------ceEeEeecCCccEEEcCCCCCCC
Q psy12426 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-----------WEKACIVPANITATSVPDLKEGE 477 (616)
Q Consensus 409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~p~t 477 (616)
..++...|++...+.+.+.|.|..... -..|.|++...... |..........-.-.. |.|.+
T Consensus 4 kAP~vtslrI~kLsaN~v~l~WddVG~-----NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFed~--~~p~t 76 (1030)
T PHA02579 4 KAPSVTSLRIDKLSANQVYLTWDDVGA-----NFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFEDK--LQPNT 76 (1030)
T ss_pred cCCcccEEEhhhhccceEEEEeeccCC-----ceEEEEEEEeeccCCCccCCCccccceecCcccchhhhhhc--cCCcc
Q ss_pred eEEEEEEEE
Q psy12426 478 EYEFRVIAV 486 (616)
Q Consensus 478 ~Y~~~v~a~ 486 (616)
.|.|||+..
T Consensus 77 ~Yk~Rv~~~ 85 (1030)
T PHA02579 77 YYKFRVAVA 85 (1030)
T ss_pred eEEEEEEee
No 469
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=22.99 E-value=2.4e+02 Score=22.97 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=13.1
Q ss_pred CCCceEecCCCeEEEEEE
Q psy12426 8 HLGDIKLSAGTTLKFDAN 25 (616)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~ 25 (616)
.|..++|.+|+.|+|.-.
T Consensus 59 ~P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 59 EPEALVVKKGTPVKVTVE 76 (135)
T ss_pred cCCEEEECCCCEEEEEEE
Confidence 367778888888877643
No 470
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=21.89 E-value=1.5e+02 Score=30.36 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=14.4
Q ss_pred CceEecCcccCCeEEEEEEEE
Q psy12426 86 PKGKVLDLIEGNQYEFRVLAV 106 (616)
Q Consensus 86 ~~l~i~~l~~~~~~~y~c~a~ 106 (616)
..+.+++|.|+..|.|++.+.
T Consensus 64 ~~v~v~gL~p~t~Y~Y~~~~~ 84 (453)
T PF09423_consen 64 VKVDVTGLQPGTRYYYRFVVD 84 (453)
T ss_dssp EEEEE-S--TT-EEEEEEEE-
T ss_pred eecccCCCCCCceEEEEEEEe
Confidence 467899999999999999983
No 471
>PHA03112 IL-18 binding protein; Provisional
Probab=21.18 E-value=4.2e+02 Score=21.78 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=37.2
Q ss_pred EcCCeEEEEEEEeee-cC-ceeEEEECC-eeeccc-------------CcEEEEecCCceEEEecCCCCC-CcEEEEEEE
Q psy12426 229 RAGSNFEFDINVIGE-PI-PTKEWLCND-ITIISK-------------DRFKIVNDDKSTKLKVFDSKRG-DSGIYTLAV 291 (616)
Q Consensus 229 ~~g~~~~l~c~~~~~-p~-~~~~W~~~~-~~~~~~-------------~~~~~~~~~~~~~l~i~~l~~~-~~g~y~c~a 291 (616)
..++++.|+|.+.+. |. ..+.|..++ ..+... ....-...+....+.+.++... ..-.++|..
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 458899999999866 44 468899665 222110 0001111223445666666654 333666766
Q ss_pred EcCCC
Q psy12426 292 KNSWG 296 (616)
Q Consensus 292 ~n~~g 296 (616)
....|
T Consensus 116 ~D~~~ 120 (141)
T PHA03112 116 MDLDG 120 (141)
T ss_pred ecCCc
Confidence 55433
No 472
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=21.15 E-value=2.4e+02 Score=18.48 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEcCCCCCCCeEEEEEEEEcCCCCCCCC
Q psy12426 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495 (616)
Q Consensus 467 ~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s 495 (616)
++++..+ ..-.|.|.+.|.+..|.....
T Consensus 15 s~t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 15 SFTVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred EEeCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 3445555 566899999999999976533
No 473
>PF14292 SusE: SusE outer membrane protein
Probab=20.55 E-value=1.9e+02 Score=22.96 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=22.4
Q ss_pred ecCCcEEEEeeCCCCCCCCceeeeEEEEeecC
Q psy12426 568 VDKDHIKIKWQQPISNGGSAIKGYEVERRERT 599 (616)
Q Consensus 568 ~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~ 599 (616)
.....++++|.++.....+....|.|++-..+
T Consensus 42 ~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~ 73 (122)
T PF14292_consen 42 ASDNAVTFTWTAADYGGPDAPVTYTLQFDKKG 73 (122)
T ss_pred cCCceEEEEEECCccCCCCCceEEEEEEeccC
Confidence 45568999999976543324568999886544
No 474
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=20.44 E-value=86 Score=32.06 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=15.0
Q ss_pred ccEEEcCCCCCCCeEEEEEEE
Q psy12426 465 ITATSVPDLKEGEEYEFRVIA 485 (616)
Q Consensus 465 ~~~~~l~~L~p~t~Y~~~v~a 485 (616)
...+.|++|.|++.|.|++.+
T Consensus 63 t~~v~v~gL~p~t~Y~Y~~~~ 83 (453)
T PF09423_consen 63 TVKVDVTGLQPGTRYYYRFVV 83 (453)
T ss_dssp EEEEEE-S--TT-EEEEEEEE
T ss_pred EeecccCCCCCCceEEEEEEE
Confidence 457889999999999999999
No 475
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=20.07 E-value=4.6e+02 Score=21.34 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=31.2
Q ss_pred ecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426 322 ITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL 393 (616)
Q Consensus 322 ~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~ 393 (616)
...-.+.|+|..=. |..-..|.+... +...|.-... ..... ......+..|.++|..+|..|.+.
T Consensus 35 ~~~v~V~VtwN~Ws---G~~Gd~~kly~d--G~~V~tG~~~-~~~~a-~~~~~~gG~y~~~VeLCN~~GCS~ 99 (133)
T PF08329_consen 35 NDQVDVSVTWNVWS---GTNGDTAKLYFD--GVLVWTGPSP-QQKSA-TFTVTKGGRYQMQVELCNADGCST 99 (133)
T ss_dssp -SSEEEEEEEE-SS---S---SEEEEEET--TEEEEEEE---SEEEE-EEEE-S-EEEEEEEEEEETTEEEE
T ss_pred cCceEEEEEEEEec---CCCCCEEEEEEC--CEEEEeCCCc-cCceE-EEEecCCCEEEEEEEEECCCCccc
Confidence 34456889998522 222244444431 1112211111 12222 334467779999999999999643
Done!