RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12426
(616 letters)
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 243 bits (623), Expect = 5e-75
Identities = 68/335 (20%), Positives = 120/335 (35%), Gaps = 22/335 (6%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK---KVSPYINRDQLSDIKVRAGSNF 234
D+ + + A ++ G + + +P +Q + G+
Sbjct: 69 DVKLSDSGRYDCEAASRIGGHQ---------KSMYLDIEYAPKFISNQ-TIYYSWEGNPI 118
Query: 235 EFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 292
+V P + W + + + +K+ K + + L++ + D G Y
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 293 NSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM 352
N GT + + D+PS P G K +++++ + + P GG I HY V+ ++
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGV-KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV 237
Query: 353 ETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD 411
+ W + T NL Y RV AVN G+ + I P P
Sbjct: 238 ASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS--KIEIFQTLPVREPS 295
Query: 412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSV 470
P L T DGG+PI +YI++ + K V N +
Sbjct: 296 PPS-IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIIL 353
Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
L+ YE ++ A N+ G EP+ + KP
Sbjct: 354 EHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKP 388
Score = 157 bits (398), Expect = 1e-42
Identities = 62/417 (14%), Positives = 103/417 (24%), Gaps = 99/417 (23%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWL-------CNDITIISKDRFKIVNDDKSTKL 274
QL + + GEPIP W + R ++ S+ L
Sbjct: 6 QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65
Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAP 334
+ D K DSG Y + G + + + + P+ +
Sbjct: 66 HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY---APKFISNQTIYY----------- 111
Query: 335 RDDGGTDILHYVVEKMDMETGRW------VPMGDVSGTYTRA---------ENLIEGHDY 379
+G + V+ + W +P + + T + +
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFG 171
Query: 380 NFRVKAVNKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKD 436
+ A N IG L P P + + + + + P
Sbjct: 172 RYNCTATNHIGTRFQEYILALA---------DVPSSPYGVKIIELSQTTAKVSFNKPDSH 222
Query: 437 GGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSK 496
GG PI Y ++ K K T + +L+ YE RV AVN G G+ SK
Sbjct: 223 GGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK 282
Query: 497 ASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNV 556
T R
Sbjct: 283 IEIFQTLPVR-------------------------------------------------- 292
Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
P K+ + +GG+ I Y V+ R +
Sbjct: 293 EPSPPSIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK 348
Score = 73.7 bits (181), Expect = 4e-14
Identities = 42/285 (14%), Positives = 73/285 (25%), Gaps = 80/285 (28%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNP------------------ 42
AP + G + ++ P + WR
Sbjct: 100 APKF-ISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKM 158
Query: 43 -LNLRPIWEK------C-AQTEGDT---------------PKG-KVLDL----------- 67
L + P + C A T P G K+++L
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNK 218
Query: 68 --IEGNHPI-------------WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG 112
G PI K ++ G + +L YE RV AVN G G
Sbjct: 219 PDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 278
Query: 113 EPSDPTAPHIARAKKGKCYHLVGTLLKDSIYE-----QLKRSGLFDQFHL------CPIW 161
+ S ++ + G ++ Q ++ +
Sbjct: 279 DYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQ 338
Query: 162 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
+ +G+ + L YE ++ A N+ G EP+
Sbjct: 339 WLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383
Score = 47.9 bits (114), Expect = 6e-06
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
K ++ G + +L YE RV AVN G G+ S
Sbjct: 241 IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQ 287
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 196 bits (500), Expect = 1e-59
Identities = 69/201 (34%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVS 364
+D P PP+ K +TK+S L W P DGG+ I +Y+VEK + + + +
Sbjct: 2 AMDTPGPPQDL-KVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCH 60
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
T + + L EG Y FRV A N+ G LP + RP PG+ T+ D ++
Sbjct: 61 KTSWKVDQLQEGCSYYFRVLAENEYGIGLPA---ETAESVKASERPLPPGKITLMDVTRN 117
Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKACIVPANITATSVPDLKEGEEYEFRV 483
V L W P+ DGGS I YI+E + K W +T ++ L +GEEY FRV
Sbjct: 118 SVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWAT--CATVKVTEATITGLIQGEEYSFRV 175
Query: 484 IAVNKGGPGEPSKASAPVTCK 504
A N+ G +P + S PV K
Sbjct: 176 SAQNEKGISDPRQLSVPVIAK 196
Score = 145 bits (368), Expect = 1e-40
Identities = 50/202 (24%), Positives = 71/202 (35%), Gaps = 50/202 (24%)
Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 468
P P V + K V L W PP DGGS I YI+EK+ + T+
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSW 64
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPF 528
V L+EG Y FRV+A N+ G G P++ + V
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKAS------------------------ 100
Query: 529 ITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAI 588
P P K DV ++ + + W++P +GGS I
Sbjct: 101 --------------------------ERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRI 134
Query: 589 KGYEVERRERTSGRWIKITPDP 610
GY VE + + S +W
Sbjct: 135 LGYIVEMQTKGSDKWATCATVK 156
Score = 98.2 bits (245), Expect = 9e-24
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
V + P PP G + ++T++S +L W P DGG+ IL Y+VE + +W V
Sbjct: 97 VKASERPLPP-GKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATV 155
Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD 405
T LI+G +Y+FRV A N+ G S P P+ AKD
Sbjct: 156 KVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAKD 197
Score = 80.5 bits (199), Expect = 1e-17
Identities = 38/163 (23%), Positives = 55/163 (33%), Gaps = 33/163 (20%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
E + A T KV L EG Y FRVLA N+ G G P++ A +
Sbjct: 46 ESTRKAYSTVA-TNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL 104
Query: 129 KCYHLVGTLLKDS---------------------IYEQLKRSGLFDQFHLCPIWEKCAQT 167
+ + + + Q K S W C
Sbjct: 105 PPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDK---------WATC--A 153
Query: 168 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
+ + LI+G +Y FRV A N+ G +P + P IA+
Sbjct: 154 TVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 67.8 bits (166), Expect = 4e-13
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
PG P + +V K + + W P+ +GGS IK Y VE+RE T + + + +T
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKT 62
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 193 bits (491), Expect = 5e-58
Identities = 41/210 (19%), Positives = 63/210 (30%), Gaps = 10/210 (4%)
Query: 302 AKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG 361
A + D PS P S+ +++ P GG IL Y E + W
Sbjct: 1 APLAQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKW 58
Query: 362 D-----VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQP 416
L Y R+ A+N G T P P P
Sbjct: 59 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT--QPVREPSAPKLE 116
Query: 417 TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEG 476
+ + + DGGSPI Y++ + W+ +P+ + L
Sbjct: 117 GQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWN 175
Query: 477 EEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
EYE V+A N+ G + +
Sbjct: 176 AEYEVYVVAENQQGKSKAAHFVFRTAAAHH 205
Score = 121 bits (306), Expect = 7e-32
Identities = 40/216 (18%), Positives = 61/216 (28%), Gaps = 57/216 (26%)
Query: 406 PFGRPDRPGQPT--VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKA---C 459
P + D P P+ + +++ P+ GG PI +Y E + W
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQD 519
+ ++ LK Y R+ A+N G GE S AS +P
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS-EFKTQPV------------- 107
Query: 520 MTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQ 579
P P D + IK+ +
Sbjct: 108 -----------------------------------REPSAPKLEGQMGEDGNSIKVNLIK 132
Query: 580 PISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
+GGS I+ Y V R S W P +
Sbjct: 133 Q-DDGGSPIRHYLVRYRA-LSSEWKPEIRLPSGSDH 166
Score = 73.3 bits (180), Expect = 5e-15
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 20/148 (13%)
Query: 72 HPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKC- 130
H W + + ++ L Y R+ A+N G GE S + ++
Sbjct: 55 HSKWYDAKEASMEGIV-TIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAP 113
Query: 131 -YHLVGTLLKDSIYEQLKRSGLFDQFHLCPI-------------WEKCAQTEGDTPKGKV 176
+SI ++ D PI W+ + + +
Sbjct: 114 KLEGQMGEDGNSI--KVNLIKQDD--GGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVML 169
Query: 177 LDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
L +YE V+A N+ G + +
Sbjct: 170 KSLDWNAEYEVYVVAENQQGKSKAAHFV 197
Score = 58.7 bits (142), Expect = 4e-10
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 556 VPGKPSKP--EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
PS P + + ++++ +P + GG I Y+ E R W D
Sbjct: 5 QADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 64
Query: 614 KTS 616
Sbjct: 65 SME 67
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 189 bits (481), Expect = 2e-56
Identities = 43/214 (20%), Positives = 74/214 (34%), Gaps = 18/214 (8%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD------- 362
PP P + ++ S L W PR+DG ++ V +M + W D
Sbjct: 2 TYPP-TPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 363 ----VSGTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPIT--AKDPFGRPDRPG 414
G A +L H Y FR+ AV ++ + P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 415 QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--GPWEKACIVPANITATSVPD 472
+ ++ + V L W+ I+ Y +P G + KA I A+ + +
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
L+ YEF++ + + E S T +P+
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
Score = 127 bits (320), Expect = 9e-34
Identities = 38/215 (17%), Positives = 58/215 (26%), Gaps = 60/215 (27%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--GPWEKA-----------C 459
P P VT + V L W P+ + G PI + ++ + W+
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63
Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQD 519
SV DLK Y FR++AV + S SA +P
Sbjct: 64 SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP-------------- 109
Query: 520 MTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQ 579
+P P E + + + + W
Sbjct: 110 --GAALDP-----------------------------MPVPELLEIEEYSETAVVLHWSL 138
Query: 580 PISNGGSAIKGYEVERRERTS-GRWIKITPDPIRT 613
I GY R +S G + K T +
Sbjct: 139 ASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHA 173
Score = 81.4 bits (201), Expect = 9e-18
Identities = 24/158 (15%), Positives = 42/158 (26%), Gaps = 18/158 (11%)
Query: 73 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK----- 127
K G + V DL + Y FR+LAV + S+ +A +
Sbjct: 57 YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPM 116
Query: 128 GKCYHLVGTLL-KDSIY---EQLKRSG---------LFDQFHLCPIWEKCAQTEGDTPKG 174
L + ++ + + + K
Sbjct: 117 PVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSF 176
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK 212
K+ L YEF++ + + E S R K
Sbjct: 177 KIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
Score = 77.9 bits (192), Expect = 1e-16
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 4/107 (3%)
Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVP 359
LD PE + ++++ L W D I Y + G +
Sbjct: 107 LQPGAALDPMPVPELL-EIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFK 165
Query: 360 MGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
L Y F++++ + S + T +
Sbjct: 166 ATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212
Score = 50.2 bits (120), Expect = 4e-07
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 155 FHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP-HIARAKK 213
++ K G + V DL + Y FR+LAV + S+ +A ++
Sbjct: 53 DNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAA 112
Query: 214 VSP 216
+ P
Sbjct: 113 LDP 115
Score = 48.7 bits (116), Expect = 1e-06
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTS-GRWIKITPD 609
P+ P T + + + ++W P N G I ++V+ R W +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDN 54
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 188 bits (479), Expect = 4e-55
Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 4/234 (1%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD 237
+ + + ++V A N+GG + + K+ + + + G
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASL--EVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125
Query: 238 INVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 296
I G+P P W I + ++++ ++ + +R D+G Y + KN +G
Sbjct: 126 IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Query: 297 TDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR 356
D+ T ++ V D+P PP G K S++++ S NL W P DGG+ I +Y+VEK R
Sbjct: 186 IDQKTVELDVADVPDPPRGV-KVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAER 244
Query: 357 WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
W+ +G T NL Y FRV A NK G S P P K+ R
Sbjct: 245 WLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRA 298
Score = 150 bits (381), Expect = 4e-41
Identities = 70/312 (22%), Positives = 115/312 (36%), Gaps = 41/312 (13%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKI-VNDDKS 271
++P+ +++L ++ VR SN V G P P +W II +++I
Sbjct: 3 MAPHF-KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS--PPEGPLKPSNIT---KSS 326
+L + D+ +Y + N G+ GTA + V P+ +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 327 CNLE------------WRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLI 374
+++ W+ + + +D V + + +
Sbjct: 122 VSIKIPFSGKPDPVITWQ--KGQ----------DLIDNNGHYQVIVTRSFTSLVFPNGVE 169
Query: 375 EGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK 434
+ V A N+ G + D PD P V+D +D V+L WT P
Sbjct: 170 RKDAGFYVVCAKNRFGID---QKTVELDVADV---PDPPRGVKVSDVSRDSVNLTWTEPA 223
Query: 435 KDGGSPISQYIIEKKPKY-GPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE 493
DGGS I+ YI+EK W + T +V +L Y+FRVIA NK G +
Sbjct: 224 SDGGSKITNYIVEKCATTAERWLRVGQARE--TRYTVINLFGKTSYQFRVIAENKFGLSK 281
Query: 494 PSKASAPVTCKP 505
PS+ S P K
Sbjct: 282 PSEPSEPTITKE 293
Score = 66.3 bits (162), Expect = 4e-12
Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 50/186 (26%)
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYN--- 526
+ + + + ++V A N+GG AS V + P + + + A
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVS-GTASLEVEVPAKIHLPKTLE-GMGAVHALRGEVVS 123
Query: 527 ----------PFITLLFKNFVLDLNEGLK-----SMVKLSYIDNV--------------- 556
P IT ++D N + S L + + V
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 557 ---------------PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG 601
P P + +DV +D + + W +P S+GGS I Y VE+ T+
Sbjct: 184 FGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE 243
Query: 602 RWIKIT 607
RW+++
Sbjct: 244 RWLRVG 249
Score = 55.2 bits (133), Expect = 2e-08
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
W + + + V++L Y+FRV+A NK G +PS+P+ P I + K
Sbjct: 245 WLRVG--QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRA 298
Score = 53.6 bits (129), Expect = 6e-08
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
W + + + V++L Y+FRV+A NK G +PS+P+ P I +
Sbjct: 245 WLRVG--QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITK 292
Score = 35.9 bits (83), Expect = 0.027
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 27/115 (23%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTP 60
APH L ++ + + + G P P V W G + D
Sbjct: 4 APHFKEE-LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI------------IADGL 50
Query: 61 KGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115
K ++ + G H + + + + + ++V A N+GG +
Sbjct: 51 KYRIQEFKGGYHQL--------------IIASVTDDDATVYQVRATNQGGSVSGT 91
Score = 33.6 bits (77), Expect = 0.16
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
+G + G + G+P P + W+ G + ++
Sbjct: 109 EGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 193 bits (491), Expect = 4e-54
Identities = 79/471 (16%), Positives = 136/471 (28%), Gaps = 30/471 (6%)
Query: 49 WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
W+ +T +T L H + A+ + T + E V A N
Sbjct: 123 WDGGRETHLET--NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENA 180
Query: 109 GGPGEPSDPTAPHIARAK-------KGKCYHLVGTLLKDSIYEQLKRSGLFDQFHL---- 157
G + + K + ++LK + +S + ++++
Sbjct: 181 LGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT 240
Query: 158 --CPIWEKCA--QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 213
W + T V DL +Y FR+ + + G G SD + +
Sbjct: 241 KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE 300
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT--IISKDRFKIVNDDKS 271
P I + ++ + +P E I ++ R+K + +
Sbjct: 301 DRPSKAPSFWYKIDPSHTQG-YRTVQLVWKTLPPFEANG-KILDYEVTLTRWKSHLQNYT 358
Query: 272 TKLKVF-DSKRGDSGIYTLAVKNSWGT-DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNL 329
+ D + TL V+N G D + D + + + +
Sbjct: 359 VNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWV 418
Query: 330 EWRAPRDDGGTDILHYVVEKMDMETGR-WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK 388
EW PR+ IL + V W NL E Y V V
Sbjct: 419 EWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYA 478
Query: 389 IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWT-PPKKDGGSPISQYIIE 447
G P I A P + GK+ LEW P I Y I
Sbjct: 479 DGPGSP----ESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIF 534
Query: 448 KKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
+ G V ++ T ++ L Y R+ A G + + +
Sbjct: 535 YRTIIGNETA-VNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
Score = 140 bits (355), Expect = 1e-35
Identities = 61/399 (15%), Positives = 107/399 (26%), Gaps = 69/399 (17%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT------IISKDRFKIVNDDKSTKLKVF 277
V+ SNF + + + N I I K+++ I+N S+ F
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV--TF 68
Query: 278 DSKRGDSGIYTLAVKNSWGTDKG--TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPR 335
+ T + ++ + P P+ L EW R
Sbjct: 69 TDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGR 127
Query: 336 DDGGTDILHYVV--EKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL 393
+ ++ + E + D + T + + + V+A N +G+
Sbjct: 128 ETHL--ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT 185
Query: 394 PLVCQSPITAK-DPFGRPDRPGQPTVTD--WGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
I +P+ P +V + + L WT P I +Y I+ +
Sbjct: 186 S----DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS-IKSVIILKYNIQYRT 240
Query: 451 KY-GPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 507
K W + T +S V DLK EY FR+ + + G G S S +
Sbjct: 241 KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE 300
Query: 508 VAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATD 567
P +
Sbjct: 301 DRPSK------------------------------------------APSFWYKIDPSHT 318
Query: 568 VDKDHIKIKWQQ-PISNGGSAIKGYEVERRERTSGRWIK 605
+++ W+ P I YEV S
Sbjct: 319 QGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNY 357
Score = 115 bits (289), Expect = 3e-27
Identities = 55/474 (11%), Positives = 116/474 (24%), Gaps = 94/474 (19%)
Query: 159 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYI 218
+ A+ + T + E V A N G + + K P
Sbjct: 145 KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPP-- 202
Query: 219 NRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD 278
++ V + + P+ + + I + +++ + +++ D
Sbjct: 203 -----HNLSVINSEELSSILKLTWTN-PSIK---SVIILKYNIQYRTKDASTWSQIPPED 253
Query: 279 SKRGDSGI----------YTLAV--KNSWGTDKG---TAKVTVLDIPSPPEGPLKP---- 319
+ S Y + G + + + + P
Sbjct: 254 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKI 313
Query: 320 ---SNITKSSCNLEWRA-PRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIE 375
+ L W+ P + IL Y V ++ + + T+ +
Sbjct: 314 DPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYTVNATKLTVNLT 369
Query: 376 GHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK 435
Y + N +G+S + +T + P + + +EWT P++
Sbjct: 370 NDRYLATLTVRNLVGKSDA----AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE 425
Query: 436 DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
I ++ + + +L E + Y V V GPG P
Sbjct: 426 SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE 485
Query: 496 KASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDN 555
+ +
Sbjct: 486 ----SIKAYLKQAP---------------------------------------------- 495
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQ-PISNGGSAIKGYEVERRERTSGRWIKITP 608
P K V K+ ++W Q P+ I+ Y + R
Sbjct: 496 -PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVD 548
Score = 113 bits (283), Expect = 2e-26
Identities = 45/353 (12%), Positives = 86/353 (24%), Gaps = 73/353 (20%)
Query: 276 VFDSKRGDSGIYTLAVKNSWGT---DKGTAKVTVLDIPSPPEGP-LKPSNITKSSCNLEW 331
+ + + + +N+ G D P+PP + S S L W
Sbjct: 162 DYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTW 221
Query: 332 RAPRDDGGTDILHYVVEKMDMETGRW--VPMGDVSGTYTRAE--NLIEGHDYNFRVKAVN 387
P IL Y ++ + W +P D + T + +L +Y FR++ +
Sbjct: 222 TNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 280
Query: 388 KIGESLPLVCQSPITAKDPFGRPDRP-----GQPTVTDWGKDHVDLEWTP-PKKDGGSPI 441
+ G+ + RP + G V L W P + I
Sbjct: 281 EDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKI 340
Query: 442 SQYIIEKKPKYGPWEKAC-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAP 500
Y + W+ N T +V + Y + N G + + + P
Sbjct: 341 LDYEVT----LTRWKSHLQNYTVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIP 394
Query: 501 VTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKP 560
P
Sbjct: 395 ACDFQ---------------------------------------------------ATHP 403
Query: 561 SKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
+ + ++W P + I + V + + +
Sbjct: 404 VMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHR 456
Score = 73.9 bits (181), Expect = 6e-14
Identities = 33/299 (11%), Positives = 75/299 (25%), Gaps = 62/299 (20%)
Query: 320 SNITKSSCNLEWRAPRDDGGTD-ILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHD 378
SN T + C L+ + + + + ++ + + + T +
Sbjct: 19 SNFT-AVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ 77
Query: 379 YNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGG 438
+ ++ ++ V I + P P++P + + EW + +
Sbjct: 78 LTCNILTFGQLEQN---VYGITIISGLP---PEKPKNLSCIVNEGKKMRCEWDGGR-ETH 130
Query: 439 SPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
+ + + + + + T E V A N G +
Sbjct: 131 LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 190
Query: 499 APVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPG 558
VK P
Sbjct: 191 FDPV-------------------------------------------YKVK-------PN 200
Query: 559 KPSKPEATDVD--KDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P + + +K+ W P S I Y ++ R + + W +I P+ +
Sbjct: 201 PPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 258
Score = 30.7 bits (69), Expect = 1.5
Identities = 6/61 (9%), Positives = 14/61 (22%), Gaps = 2/61 (3%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P KP + ++ +W + ++ T T
Sbjct: 102 PPEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATHKFADCKAKRDTPTSC 159
Query: 616 S 616
+
Sbjct: 160 T 160
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 156 bits (397), Expect = 2e-44
Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 12/205 (5%)
Query: 198 GEPSDPTAPHIARAKKVS-PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 256
+ ++ + R + P + + G+ V P T W +
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGPV--AVYTWEGNQVNITCEVFAYPSATISWFRDGQL 58
Query: 257 IISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
+ S + KI N ++ L+V D G Y N G + + D PS P
Sbjct: 59 LPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPS 118
Query: 315 GPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM----DMETGRWVPMGDVSG-TYTR 369
S+ +++ P GG IL Y E ++ +W + S
Sbjct: 119 IDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVT 176
Query: 370 AENLIEGHDYNFRVKAVNKIGESLP 394
L Y R+ A+N G
Sbjct: 177 IVGLKPETTYAVRLAALNGKGLGEI 201
Score = 93.4 bits (232), Expect = 7e-22
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-----YGPWEKACIVP 462
P P V + +++ P+ GG PI +Y E + + W A
Sbjct: 112 DTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170
Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
T + LK Y R+ A+N G GE S AS T +
Sbjct: 171 MEGIVT-IVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVQ 213
Score = 48.7 bits (116), Expect = 1e-06
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
P PS + ++++ +P + GG I Y+ E R W D
Sbjct: 113 TPSSPSIDQVEPY-SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 169
Score = 47.1 bits (112), Expect = 4e-06
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
W + + ++ L Y R+ A+N G GE S +
Sbjct: 163 WYDAKEASMEGIV-TIVGLKPETTYAVRLAALNGKGLGEISAAS 205
Score = 47.1 bits (112), Expect = 4e-06
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
W + + ++ L Y R+ A+N G GE S +
Sbjct: 163 WYDAKEASMEGIV-TIVGLKPETTYAVRLAALNGKGLGEISAAS 205
Score = 32.9 bits (75), Expect = 0.21
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
AP + + + G + + P + W G L
Sbjct: 19 APKL--QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLP 60
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 158 bits (401), Expect = 4e-44
Identities = 40/325 (12%), Positives = 83/325 (25%), Gaps = 73/325 (22%)
Query: 291 VKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM 350
+ + +V P LK + +T +S + +W P + Y V
Sbjct: 1 MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVT 56
Query: 351 DMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFG 408
E + +++ + L+ Y V A+ S P
Sbjct: 57 PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ-----GVVTTLE 111
Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 468
P + VTD + + + W I+ + ++ P G + ++ +
Sbjct: 112 NVSPPRRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIKPDVRSY 167
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPF 528
++ L+ G +Y+ + +N PV
Sbjct: 168 TITGLQPGTDYKIYLYTLNDNARSS------PVVIDASTA-------------------- 201
Query: 529 ITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAI 588
PS + + + WQ P + I
Sbjct: 202 ----------------------------IDAPSNLRFLATTPNSLLVSWQPP----RARI 229
Query: 589 KGYEVERRERTSGRWIKITPDPIRT 613
GY ++ + S +
Sbjct: 230 TGYIIKYEKPGSPPREVVPRPRPGV 254
Score = 140 bits (354), Expect = 1e-37
Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 23/219 (10%)
Query: 287 YTLAVK--NSWGT-DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDIL 343
Y ++V T VT L+ SPP + ++ T+++ + WR + I
Sbjct: 87 YEVSVYALKDTLTSRPAQGVVTTLENVSPPRR-ARVTDATETTITISWRTKTET----IT 141
Query: 344 HYVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPI 401
+ V+ + + + L G DY + +N S P I
Sbjct: 142 GFQVDAVPANGQTPIQR-TIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSP----VVI 196
Query: 402 TAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACI 460
A D P + + + W PP + I+ YII+ + P E
Sbjct: 197 DASTA---IDAPSNLRFLATTPNSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPR 249
Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
+T ++ L+ G EY VIA+ EP
Sbjct: 250 PRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGRK 288
Score = 99.1 bits (247), Expect = 3e-23
Identities = 33/232 (14%), Positives = 56/232 (24%), Gaps = 67/232 (28%)
Query: 385 AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQY 444
A + S L + + P P T + +WTPP ++ Y
Sbjct: 2 AHHHHHHSSGL----EVLFQGP--AIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGY 51
Query: 445 IIEKKPKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
+ PK K + + ++ V L +YE V A+ P++
Sbjct: 52 RVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLE 111
Query: 504 KPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKP 563
P +
Sbjct: 112 NV----------------------------------------------------SPPRRA 119
Query: 564 EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
TD + I I W+ I G++V+ I+ T P
Sbjct: 120 RVTDATETTITISWRTKTET----ITGFQVDAVPANGQTPIQRTIKPDVRSY 167
Score = 86.0 bits (213), Expect = 1e-18
Identities = 39/252 (15%), Positives = 66/252 (26%), Gaps = 45/252 (17%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 220
K D+ V L+ +YE V A+ P+ + P
Sbjct: 63 PMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENV--SPP---- 116
Query: 221 DQLSDIKVRAGSNFEFDI-------NVIG-----EPIPTKEWLCNDITIISKDRFKIVND 268
+V + I + G P + + I + I
Sbjct: 117 ---RRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIK-PDVRSYTITGL 172
Query: 269 DKSTKLKVFDSKRGDSGIYTLAV--KNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSS 326
T Y + + N + P L+ T +S
Sbjct: 173 QPGTD-------------YKIYLYTLNDNARSS-PVVIDASTAIDAPSN-LRFLATTPNS 217
Query: 327 CNLEWRAPRDDGGTDILHYVVEKMDMETGRW--VPMGDVSGTYTRAENLIEGHDYNFRVK 384
+ W+ PR I Y+++ + VP T L G +Y V
Sbjct: 218 LLVSWQPPRA----RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVI 273
Query: 385 AVNKIGESLPLV 396
A+ +S PL+
Sbjct: 274 ALKNNQKSEPLI 285
Score = 62.1 bits (151), Expect = 8e-11
Identities = 22/161 (13%), Positives = 39/161 (24%), Gaps = 15/161 (9%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
K D+ V L+ +YE V A+ P+ +
Sbjct: 57 PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENV--S 114
Query: 129 KCYHLVGTLL-KDSIYEQLKR-SGLFDQFHLC-----PIWEKCAQTEGDTPKGKVLDLIE 181
T + +I + + F + + D + L
Sbjct: 115 PPRRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQP 174
Query: 182 GNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 216
G Y+ + +N P AP R +P
Sbjct: 175 GTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTP 215
Score = 59.4 bits (144), Expect = 7e-10
Identities = 21/151 (13%), Positives = 37/151 (24%), Gaps = 36/151 (23%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKG 128
+ D + L G Y+ + +N P AP R
Sbjct: 154 TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLR---- 209
Query: 129 KCYHLVGTLLKDSI-------------YE-QLKRSGLFDQFHLCPIWEKCAQTEGDTPKG 174
+S+ Y + ++ G P E + +
Sbjct: 210 -----FLATTPNSLLVSWQPPRARITGYIIKYEKPGS-------PPREVVPRPRPGVTEA 257
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
+ L G +Y V+A+ EP
Sbjct: 258 TITGLEPGTEYTIYVIALKNNQKSEPLIGRK 288
Score = 43.2 bits (102), Expect = 1e-04
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 60 PKGKV----LDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115
P+ ++ + + P E + + + L G +Y V+A+ EP
Sbjct: 225 PRARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284
Query: 116 DPTA 119
Sbjct: 285 IGRK 288
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 152 bits (387), Expect = 3e-43
Identities = 40/197 (20%), Positives = 67/197 (34%), Gaps = 12/197 (6%)
Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVS 364
V D+P+ P+ + W D + ILHY ++ W +
Sbjct: 2 VQDVPNAPKLTG--ITCQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKV 58
Query: 365 GTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDR-PGQPTVTDW 421
+ + +Y FRV A NKIG S P T + P + P
Sbjct: 59 PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPD--VPFKNPDNVVGQGT 116
Query: 422 GKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYGP--WEKACIVPANITATSVPDLKEGEE 478
+++ + WTP + + +P Y + K WE I + D +
Sbjct: 117 EPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVK 176
Query: 479 YEFRVIAVNKGGPGEPS 495
Y +V+A+N G +
Sbjct: 177 YLIKVVAINDRGESNVA 193
Score = 117 bits (296), Expect = 1e-30
Identities = 40/210 (19%), Positives = 59/210 (28%), Gaps = 54/210 (25%)
Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WEKACIVPANI 465
P+ P +T D ++ W D SPI Y I+ + P W+ A N
Sbjct: 4 DVPNAPKLTGITC-QADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEY 525
++ V + Y FRVIA NK G PS S T +P P
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPD--VP--------------- 104
Query: 526 NPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQ-PISNG 584
P + +++ I W P
Sbjct: 105 -------------------------------FKNPDNVVGQGTEPNNLVISWTPMPEIEH 133
Query: 585 GSAIKGYEVE-RRERTSGRWIKITPDPIRT 613
+ Y V +R+ + W R
Sbjct: 134 NAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 163
Score = 72.1 bits (177), Expect = 1e-14
Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 16/146 (10%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK--GKCYH 132
W+ + +T V+ + Y FRV+A NK G PS + + +
Sbjct: 51 WDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDN 110
Query: 133 LVGT-LLKDSIY---EQLKRSG----------LFDQFHLCPIWEKCAQTEGDTPKGKVLD 178
+VG +++ + + + WE + + D
Sbjct: 111 VVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIAD 170
Query: 179 LIEGNQYEFRVLAVNKGGPGEPSDPT 204
+Y +V+A+N G +
Sbjct: 171 QPTFVKYLIKVVAINDRGESNVAAEE 196
Score = 55.1 bits (133), Expect = 8e-09
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 220
W+ + +T V+ + Y FRV+A NK G PS + + P+ N
Sbjct: 51 WDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSC--TTQPDVPFKN- 107
Query: 221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
++ + + + P+P E
Sbjct: 108 --PDNVVGQGTEPNN--LVISWTPMPEIEH 133
Score = 44.7 bits (106), Expect = 2e-05
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRE-RTSGRWIKITPDPIRTK 614
VP P T D +I W+Q + S I Y ++ T W T
Sbjct: 5 VPNAPKLTGIT-CQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTD 62
Query: 615 TS 616
+S
Sbjct: 63 SS 64
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 164 bits (416), Expect = 3e-43
Identities = 64/471 (13%), Positives = 138/471 (29%), Gaps = 72/471 (15%)
Query: 159 PIWEKCAQTEGDTPKGKV-LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 217
PIW + ++ + N Y+ + G G + + +P+
Sbjct: 108 PIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPH 167
Query: 218 INRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL--CNDITIISKDRFKIVNDDKST-KL 274
++ +++V AG F + IG + D+ K+ + +
Sbjct: 168 FL--RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASF 225
Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAP 334
V ++ + D+G Y ++ G V+ P P P + +++ + ++ A
Sbjct: 226 NVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNAN 285
Query: 335 RDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK--IGES 392
+G I+ VE +G W V T + +L +Y V G
Sbjct: 286 SINGDGPIVAREVEYCT-ASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG 344
Query: 393 LPLVCQSPITAKDPFGRPDR-PGQPTVTDWGKDHVDLEWTPPKKDGGS-PISQYIIEKKP 450
P + + P R P + V + + + W P + +
Sbjct: 345 SPG---PALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCY 401
Query: 451 KYGP-----WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+ G E + + ++ +L ++I +N G E S + +
Sbjct: 402 QVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE----SQELIVQ- 456
Query: 506 RFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKP-E 564
T ++ +PG
Sbjct: 457 ---------------TDED-------------------------------LPGAVPTESI 470
Query: 565 ATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
++ I ++W++P G I YE+ + +S + +
Sbjct: 471 QGSTFEEKIFLQWREPTQTYGV-ITLYEITYKAVSSFDPEIDLSNQSGRVS 520
Score = 114 bits (286), Expect = 1e-26
Identities = 45/371 (12%), Positives = 82/371 (22%), Gaps = 70/371 (18%)
Query: 238 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
+ V P+ W + +L + + + +
Sbjct: 98 VKVNNGPLGNPIWNISG---------DPTRTWNRAELAISTFWPNFYQVIFEVITSGHQG 148
Query: 298 DKGTAKVTVLDIPSPPEGPL-KPSNIT---KSSCNLEWRAPRDDGGTDILHYVVEKMDME 353
+V VL P + N+ + A D L +
Sbjct: 149 YLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA 208
Query: 354 TGRWVPMGDVSGTYTR--AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD 411
+ + + N + +R + G S P
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG-----ISNYAELVVKEPPV 263
Query: 412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVP 471
P + G ++ ++ +G PI +E G W P + T+ +
Sbjct: 264 PIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWND--RQPVDSTSYKIG 321
Query: 472 DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITL 531
L EYE V+ G G + + + P
Sbjct: 322 HLDPDTEYEISVLLTRPGEGG-TGSPGPALRTRTKCADP--------------------- 359
Query: 532 LFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIK-G 590
P K E +V I I+W+ N
Sbjct: 360 -------------------------MRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYN 394
Query: 591 YEVERRERTSG 601
V + G
Sbjct: 395 LTVHYCYQVGG 405
Score = 112 bits (281), Expect = 4e-26
Identities = 81/613 (13%), Positives = 157/613 (25%), Gaps = 139/613 (22%)
Query: 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPK 61
+ +++++AG F + IG V G + P+ E
Sbjct: 164 RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI---------- 213
Query: 62 GKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG--------- 112
K + V++ + + ++R + +GG G
Sbjct: 214 ---------------KVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Query: 113 -EPSDPTAPHIARAKKGKCYHLV---------GTLLKDSIYEQLKRSGLFDQFHLCPIWE 162
EP P AP + + G ++ + W
Sbjct: 259 KEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS----------WN 308
Query: 163 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQ 222
+ D+ K+ L +YE VL G G P R K P
Sbjct: 309 --DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGG-TGSPGPALRTRTKCADPMRG--- 362
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
++V + + I EP C+ + +++ ++ + +D++
Sbjct: 363 PRKLEVVEVKSRQITIRW--EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENS 420
Query: 283 DSGI----------YTLAVK--NSWGTDKGTAKVTVL----DIPSPPEGPLKPSNITKSS 326
++ + N G ++ ++ D+P + +
Sbjct: 421 HPQHTITNLSPYTNVSVKLILMNPEGR--KESQELIVQTDEDLPGAVPTESIQGSTFEEK 478
Query: 327 CNLEWRAPRDDGGTDILHYVVE---------KMDMETGRWVPMGDVSGTYTRAENLIEGH 377
L+WR P G I Y + ++D+ + T+ L G
Sbjct: 479 IFLQWREPTQTYG-VITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGT 537
Query: 378 DYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK--DHVDLEWTPPKK 435
Y+F ++A G P + P P T + + V + P
Sbjct: 538 TYSFTIRASTAKGFGPP----ATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPA-H 592
Query: 436 DGGSPISQYIIE----------------------------KKPKYGPWEKACIVPANITA 467
G+P+S Y I + A ++ A
Sbjct: 593 SRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQA 652
Query: 468 TS--------------VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVID 513
L + Y A ++ T PV +
Sbjct: 653 AQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPE 712
Query: 514 QYALQDMTAQEYN 526
D T +
Sbjct: 713 PEKQTDHTVKGTK 725
Score = 108 bits (270), Expect = 8e-25
Identities = 58/470 (12%), Positives = 120/470 (25%), Gaps = 93/470 (19%)
Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDI 226
+ V++ + + ++R + +GG G + ++P QL+ +
Sbjct: 218 SRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP----QLASV 273
Query: 227 KVRAGS-NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
+ PI +E + + ST K+
Sbjct: 274 GATYLWIQLNANSINGDGPIVAREVEYCT----ASGSWNDRQPVDSTSYKIGHLDPDTE- 328
Query: 286 IYTLAV----KNSWGTDKGTAKVTVLDIPSPPEGP---LKPSNITKSSCNLEWRAPRDDG 338
Y ++V GT + + P L+ + + W +
Sbjct: 329 -YEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNV 387
Query: 339 GT-DILHYVV----EKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGE 391
+ V + E R D ++ + NL + + ++ +N G
Sbjct: 388 TRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGR 447
Query: 392 SLPLVCQSPITAKDPFGRPDRPGQP-TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
+ + P ++ + L+W P + G I+ Y I K
Sbjct: 448 KES----QELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYEITYKA 502
Query: 451 KYGPWEKACI--------VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+ + N T L G Y F + A G G P+
Sbjct: 503 VSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA----TNQ 558
Query: 503 CKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSK 562
T P P+
Sbjct: 559 FT----------------TKIS-------------------------------APSMPAY 571
Query: 563 PEATDVDK--DHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
T +++ + + + + + G+ + Y++ E R K T
Sbjct: 572 ELETPLNQTDNTVTVMLKPA-HSRGAPVSVYQIVVEEERPRRTKKTTEIL 620
Score = 45.5 bits (107), Expect = 4e-05
Identities = 43/295 (14%), Positives = 71/295 (24%), Gaps = 79/295 (26%)
Query: 331 WRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLI---EGHDYNFRVKAVN 387
G ++ V + W GD + T+ RAE I + Y + +
Sbjct: 84 SSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVIT 143
Query: 388 K-----IGESLPLVCQSPITAKDPFGRPD----RPGQPTV---TDWGKDHVDLEWTPPKK 435
+ V P T F R GQ + G+
Sbjct: 144 SGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGI 203
Query: 436 DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
D + I + +V + + + ++R + +GG G S
Sbjct: 204 DVRDAPLKEIKVTSSRRFIAS-----------FNVVNTTKRDAGKYRCMIRTEGGVG-IS 251
Query: 496 KASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDN 555
+ V +P
Sbjct: 252 NYAELVVKEP-------------------------------------------------- 261
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
P + P+ V ++ I+ NG I EVE SG W P
Sbjct: 262 -PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCT-ASGSWNDRQPVD 314
Score = 34.0 bits (77), Expect = 0.19
Identities = 8/55 (14%), Positives = 16/55 (29%)
Query: 179 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN 233
L+ Y A ++ D A P ++ +D V+ +
Sbjct: 672 LLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQTDHTVKGTKH 726
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 157 bits (397), Expect = 6e-41
Identities = 45/358 (12%), Positives = 93/358 (25%), Gaps = 51/358 (14%)
Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGT 340
SG+ N G K +P P L+ + + ++W + +
Sbjct: 132 NECSGVKKCCS-NGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISI- 189
Query: 341 DILHYVVE--------KMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES 392
+ + YVV+ + + W + + + ++ Y FRV AVN G
Sbjct: 190 EPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTR 249
Query: 393 LPLVCQSPITAKDPFGRPDRPGQPTVTDW-----GKDHVDLEWTPPKKDGGSPISQYIIE 447
+ P P + + G V + W P++ P+ Y +
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKVF 308
Query: 448 KKPK-------YGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAP 500
++ + + L+ +Y + A+ G A
Sbjct: 309 WSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVS 368
Query: 501 VTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKP 560
+ +Q L +L + P +P
Sbjct: 369 LHFTSTHATNNKEQ-----------------------LVKTRKGGIQTQLPFQRRRPTRP 405
Query: 561 SKPEATDVDKDHIKIK--WQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
+ A +++K W++ + Y V + T
Sbjct: 406 LEVGAPFYQDGQLQVKVYWKKT---EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTH 460
Score = 122 bits (306), Expect = 3e-29
Identities = 50/470 (10%), Positives = 115/470 (24%), Gaps = 101/470 (21%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
E + W+ AQT + ++ D+ Y+FRV AVN G + P+ +
Sbjct: 208 EDDATHWQTVAQT--TDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPS 265
Query: 129 KC-----YHLVGTLLKDSIYEQLK--------------------RSGLFDQFHLCPIWEK 163
L + + + + + + ++
Sbjct: 266 APPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKR 325
Query: 164 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD-Q 222
T+G + L Y + A+ G + + + +
Sbjct: 326 RKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVK 385
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI----------------ISKDRFKIV 266
++ F+ + + + + +
Sbjct: 386 TRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACA 445
Query: 267 NDDKSTKLKVFDSKRGDSGI---------YTLAVKNSWGTDKGTAKVTVLDIPS------ 311
++ + + I Y + V+ A+ P
Sbjct: 446 HNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKG 505
Query: 312 ---------------PPEGPLKPSNIT--------KSSCNLEWRAPRDDGGTDILHYVVE 348
+ KP N++ + + W+ + + + + V
Sbjct: 506 KSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVT 565
Query: 349 KMDMETGR---WVPMGDVSG--------TYTRAENLIEGHDYNFRVKAVNKIGESLPLVC 397
++ T +P +S NL Y V+ + GE
Sbjct: 566 WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPA--- 622
Query: 398 QSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE 447
+ T + P P + + H + P + G PI ++
Sbjct: 623 -TIKTFRTPELPPSSAHRSHLKHRHPHH----YKPSPERYGKPIPNPLLG 667
Score = 111 bits (277), Expect = 1e-25
Identities = 56/418 (13%), Positives = 115/418 (27%), Gaps = 91/418 (21%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 220
W+ AQT + ++ D+ Y+FRV AVN G + P+ + +P
Sbjct: 214 WQTVAQT--TDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPA 271
Query: 221 DQLSDIKVRAGSNFEFDINVIGEP------------IPTKEWLCNDITIISKDRFKIVND 268
+ L S+ + ++ + + + + + +K + + D
Sbjct: 272 N-LRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTD 330
Query: 269 DKSTKLKVFDSKRGDSGIYTLAVK--NSWG---------------------------TDK 299
+ + + Y + ++ WG T K
Sbjct: 331 GFQNSVILEKLQPDCD--YVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRK 388
Query: 300 GTAKVTVLDIPSPPEGPLKPSNI----TKSSCNLEWRAPRDDGGTDILHYVVEKM----- 350
G + + P PL+ + + W+ D Y V
Sbjct: 389 GGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVN---RYHVRWFPEACA 445
Query: 351 -DMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL---------------- 393
+ TG G Y ++L Y V+ + S
Sbjct: 446 HNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKG 505
Query: 394 ----PLVCQSPITAKDPF--GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE 447
P+ C +P+ + W K + P++ + +
Sbjct: 506 KSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVT 565
Query: 448 KKPKYGPWE----------KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
++ I+P++ +VP+L+ Y V + GG G +
Sbjct: 566 WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT 623
Score = 90.8 bits (224), Expect = 3e-19
Identities = 43/358 (12%), Positives = 89/358 (24%), Gaps = 75/358 (20%)
Query: 304 VTVLDIPSPPEGP-------LKPSNITKSSCNLEWRAPRDDGGTDILHYVVE------KM 350
PS P P ++ + + W P + + HY V
Sbjct: 258 FRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKVFWSWMVSSK 316
Query: 351 DMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFG 408
+ + G E L DY ++A+ G++ + +
Sbjct: 317 SLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHA 376
Query: 409 RPDRPGQPTVT--------------------------DWGKDHVDLEWTPPKKDGGSPIS 442
++ G+ V + W ++
Sbjct: 377 TNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT---EDPTVN 433
Query: 443 QYIIEKKPKYGPWEKACIVPANITATS-----VPDLKEGEEYEFRVIAVNKGGPGEPSKA 497
+Y + P+ + A+ T + DL +Y+ V + + A
Sbjct: 434 RYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSK---A 490
Query: 498 SAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVP 557
A P A + + ++ LS + P
Sbjct: 491 EAVFFTTPPCSALKGKSHK----------------------PIGCLGEAGHVLSKVLAKP 528
Query: 558 GKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
S W+ +N + G++V E T+ P+ I +++
Sbjct: 529 ENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQS 586
Score = 30.3 bits (67), Expect = 2.2
Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 1/107 (0%)
Query: 13 KLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIE-GN 71
K T L F P+ L ++ W+K + + N
Sbjct: 388 KGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHN 447
Query: 72 HPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
+ + + DL +Y+ V + +
Sbjct: 448 RTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVF 494
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 150 bits (380), Expect = 3e-39
Identities = 41/272 (15%), Positives = 78/272 (28%), Gaps = 18/272 (6%)
Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305
E + + S FK + + G + + +
Sbjct: 269 AGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASM 328
Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE--KMDMETGRWVPMGD- 362
P L + + L W P+D GG + + Y V + E+G P
Sbjct: 329 PCTRPPSAPHYLT-AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEAS 387
Query: 363 ---------VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRP 413
++ T +L +Y F V+A N + + P
Sbjct: 388 VRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVT---SRSFRTASVSINQTEP 444
Query: 414 GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDL 473
+ + + + W+ P + +Y + + K + + ++ DL
Sbjct: 445 PKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSYN-VRRTEGFSVTLDDL 502
Query: 474 KEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
Y +V A+ + G G SK T P
Sbjct: 503 APDTTYLVQVQALTQEGQGAGSKVHEFQTLSP 534
Score = 90.2 bits (223), Expect = 3e-19
Identities = 35/228 (15%), Positives = 55/228 (24%), Gaps = 62/228 (27%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY------ 452
A P RP V+L WTPP+ GG Y + + +
Sbjct: 322 PQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGEC 381
Query: 453 ---GPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 507
+ P +T TS V DL+ Y F V A N S++ +
Sbjct: 382 GPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS----- 436
Query: 508 VAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATD 567
+ +P K
Sbjct: 437 ---------------------------------------------VSINQTEPPKVRLEG 451
Query: 568 VDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
+ + W P + YEV R++ + + T
Sbjct: 452 RSTTSLSVSWSIPPPQQSR-VWKYEVTYRKKGDSNSYNVRRTEGFSVT 498
Score = 60.6 bits (146), Expect = 8e-10
Identities = 24/191 (12%), Positives = 44/191 (23%), Gaps = 32/191 (16%)
Query: 33 HVDWRAGGNPLNLRPIWEK--CAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV 90
+ W + I C Q ++ + + +T V
Sbjct: 350 ELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSV-----TV 404
Query: 91 LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLL-KDSIY----EQ 145
DL Y F V A N S + + + S+
Sbjct: 405 SDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIP 464
Query: 146 LKRSGLFDQFHLCPI-------WEKCAQTEGDTPKGKVL-----DLIEGNQYEFRVLAVN 193
+ + +K + + + DL Y +V A+
Sbjct: 465 PPQQS--------RVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALT 516
Query: 194 KGGPGEPSDPT 204
+ G G S
Sbjct: 517 QEGQGAGSKVH 527
Score = 42.1 bits (98), Expect = 5e-04
Identities = 13/61 (21%), Positives = 14/61 (22%), Gaps = 10/61 (16%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD----------PTAPHIARAKKVS 215
V DL Y F V A N S T P R + S
Sbjct: 394 PHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRS 453
Query: 216 P 216
Sbjct: 454 T 454
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 136 bits (343), Expect = 3e-37
Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 22/207 (10%)
Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
P E + + +S ++W AP+ + I Y++ + + G
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 371 --ENLIEGHDYNFRVKAVNKIGESLPL------------VCQSPITAKDPFGRPDRPGQP 416
+ L G Y ++ ++ + G V + +T + P
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 417 TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPANITATSVPDLKE 475
+VT+ + W +S + +E + G + +P+ T+ ++PDL
Sbjct: 119 SVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLP 174
Query: 476 GEEYEFRVIAVNKGGPGEPSKASAPVT 502
G +Y V +++ G +++ T
Sbjct: 175 GRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 86.3 bits (213), Expect = 1e-19
Identities = 32/200 (16%), Positives = 61/200 (30%), Gaps = 43/200 (21%)
Query: 412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSV 470
T T + ++W P+ S IS+YI+ +PK K +P ++ + ++
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTI 60
Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFIT 530
LK G YE ++I++ + G E ++ T V +T +
Sbjct: 61 KGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTS-------NTVTGETTPF--- 110
Query: 531 LLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKG 590
P + T++ + W + G
Sbjct: 111 -------------------------SPLVATSESVTEITASSFVVSWVSA----SDTVSG 141
Query: 591 YEVERRERTSGRWIKITPDP 610
+ VE G + P
Sbjct: 142 FRVEYELSEEGDEPQYLDLP 161
Score = 54.3 bits (130), Expect = 1e-08
Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 23/154 (14%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD-------PTAPHIARAKK 127
K A G + L G YE +++++ + G E + + P +
Sbjct: 45 RWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVT 104
Query: 128 GKCYHLVGTLLKD-SIYEQLKRS---------GLFDQFHLC------PIWEKCAQTEGDT 171
G+ + S+ E S F + +
Sbjct: 105 GETTPFSPLVATSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTA 164
Query: 172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
+ DL+ G +Y V +++ G T+
Sbjct: 165 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTS 198
Score = 39.6 bits (92), Expect = 0.001
Identities = 10/77 (12%), Positives = 25/77 (32%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 220
K A G + L G YE +++++ + G E + + + V+
Sbjct: 45 RWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVT 104
Query: 221 DQLSDIKVRAGSNFEFD 237
+ + ++
Sbjct: 105 GETTPFSPLVATSESVT 121
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 135 bits (342), Expect = 4e-37
Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 16/196 (8%)
Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
+ P+ L+ S+ T+++ +L WR P Y + + + V
Sbjct: 1 INAGTDLDNPKD-LEVSDPTETTLSLRWRRPVAK----FDRYRLTYVSPSGKKNEMEIPV 55
Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK 423
T L G +Y + A +S P I P + +D +
Sbjct: 56 DSTSFILRGLDAGTEYTISLVAEKGRHKSKPTT----IKGSTV---VGSPKGISFSDITE 108
Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRV 483
+ + WTPP+ S + Y + P G V + T T + L G +Y +
Sbjct: 109 NSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNI 164
Query: 484 IAVNKGGPGEPSKASA 499
I+V EP
Sbjct: 165 ISVKGFEESEPISGIL 180
Score = 72.5 bits (178), Expect = 6e-15
Identities = 35/207 (16%), Positives = 57/207 (27%), Gaps = 63/207 (30%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
D P V+D + + L W P + +Y + G + +P + T+
Sbjct: 7 LDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEM-EIPVDSTSFI 61
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFI 529
+ L G EY ++A S P T K
Sbjct: 62 LRGLDAGTEYTISLVAEKGRH------KSKPTTIKGS----------------------- 92
Query: 530 TLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIK 589
V G P +D+ ++ + W P S +
Sbjct: 93 -------------------------TVVGSPKGISFSDITENSATVSWTPPRSR----VD 123
Query: 590 GYEVERRERTSGRWIKITPDPIRTKTS 616
Y V T G +T D +T+T
Sbjct: 124 SYRVSYVPITGGTPNVVTVDGSKTRTK 150
Score = 47.1 bits (112), Expect = 3e-06
Identities = 17/142 (11%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKGK 129
+ + D+ + L G +Y ++A +P+ +P
Sbjct: 48 KNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGIS----- 102
Query: 130 CYHLVGTLLKDSIYEQ-LKRSGLFDQFHL-----CPIWEKCAQTEGDTPKGKVLDLIEGN 183
+ ++S D + + +G + K++ L+ G
Sbjct: 103 ----FSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGV 158
Query: 184 QYEFRVLAVNKGGPGEPSDPTA 205
Y +++V EP
Sbjct: 159 DYNVNIISVKGFEESEPISGIL 180
Score = 36.3 bits (84), Expect = 0.011
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 162 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
+ + D+ + L G +Y ++A +P+
Sbjct: 48 KNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGS 92
Score = 34.3 bits (79), Expect = 0.052
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
+G + K++ L+ G Y +++V EP
Sbjct: 136 TPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGIL 180
Score = 32.4 bits (74), Expect = 0.24
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P E +D + + ++W++P++ Y + + + P +
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRRPVAK----FDRYRLTYVSPSGKKNEMEIPVDSTSFI 61
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 139 bits (351), Expect = 2e-36
Identities = 61/351 (17%), Positives = 97/351 (27%), Gaps = 53/351 (15%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSPYIN 219
D +L G +Y V V P P R + P
Sbjct: 52 VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGP--- 108
Query: 220 RDQLSDIKVR--AGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV 276
++V + + V P+ +E + S + + N T+
Sbjct: 109 ----DTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTE--- 161
Query: 277 FDSKRGDSGIYTLAVK--NSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAP 334
Y ++V T + S+IT +S + W AP
Sbjct: 162 ----------YVVSVSSVYEQHE--STPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP 209
Query: 335 RDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGES 392
R I Y + V + NL G +Y + A+N ES
Sbjct: 210 R----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREES 265
Query: 393 LPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY 452
P+ D P V + + W P + Y I
Sbjct: 266 -------PLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETG 314
Query: 453 G-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
G + VP + + ++ LK G +Y V AV G S S P++
Sbjct: 315 GNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPAS--SKPIS 363
Score = 127 bits (320), Expect = 3e-32
Identities = 54/344 (15%), Positives = 98/344 (28%), Gaps = 57/344 (16%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYT 368
SPP +N + W DI Y + + + V +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 369 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 426
+NL G +YN V V ES+P T P T+ G D +
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVP----ISDTIIPA---VPPPTDLRFTNIGPDTM 111
Query: 427 DLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIA 485
+ W PP ++ +++ P + + A + +L G EY V +
Sbjct: 112 RVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSS 168
Query: 486 VNKGGPGEPSKA------SAP--VTCKP--------RFVAP--VIDQYALQ----DMTAQ 523
V + P + +P + ++AP I Y ++ + +
Sbjct: 169 VYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGR 228
Query: 524 EYNPFITLLFKNFVL-DLNEGLK-------------SMVKLSYIDNVPGKPSKPEATDVD 569
+ + L +L G + S + + V P E
Sbjct: 229 PREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAAT 288
Query: 570 KDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
+ I W P ++ Y + E ++ P
Sbjct: 289 PTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSK 328
Score = 84.5 bits (209), Expect = 9e-18
Identities = 49/339 (14%), Positives = 88/339 (25%), Gaps = 57/339 (16%)
Query: 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLK 139
D +L G +Y V V P T + +G
Sbjct: 52 VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGP--- 108
Query: 140 DSIYEQLK----RSGLFDQFHL------CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 189
D++ ++ S F + + +L+ G +Y V
Sbjct: 109 DTM--RVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSV 166
Query: 190 LAVNKGGPGEPS------DPTAPHIARAKKVSPYINRDQLSDIKVR----AGSNFEFDIN 239
+V + P +P ++ + V + + I
Sbjct: 167 SSVYEQHESTPLRGRQKTGLDSPTGIDFSDITA-------NSFTVHWIAPRATITGYRIR 219
Query: 240 VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK--NSWGT 297
P D S++ + N T+ Y +++ N
Sbjct: 220 H--HPEHFSGRPREDRVPHSRNSITLTNLTPGTE-------------YVVSIVALNGREE 264
Query: 298 DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW 357
+ P L+ T +S + W AP + +Y + +
Sbjct: 265 SP-LLIGQQSTVSDVPR-DLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSP 318
Query: 358 VPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLP 394
V V G+ + A L G DY V AV G+S
Sbjct: 319 VQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPA 357
Score = 52.5 bits (126), Expect = 2e-07
Identities = 17/145 (11%), Positives = 32/145 (22%), Gaps = 12/145 (8%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
+ + + + +L G +Y ++A+N
Sbjct: 222 PEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQ----STVSD 277
Query: 129 KCYHL-VGTLLKDSIYEQ-LKRSGLFDQFHLC------PIWEKCAQTEGDTPKGKVLDLI 180
L V S+ + + + + G + L
Sbjct: 278 VPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLK 337
Query: 181 EGNQYEFRVLAVNKGGPGEPSDPTA 205
G Y V AV G S
Sbjct: 338 PGVDYTITVYAVTGRGDSPASSKPI 362
Score = 50.6 bits (121), Expect = 8e-07
Identities = 15/163 (9%), Positives = 36/163 (22%), Gaps = 32/163 (19%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKG 128
+ +L+ G +Y V +V + P +P
Sbjct: 138 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFS-- 195
Query: 129 KCYHLVGTLLKDSIYEQL---KRSGLFDQFHL------CPIWEKCAQTEGDTPKGKVLDL 179
+ +S + + + + + + +L
Sbjct: 196 -------DITANSF--TVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNL 246
Query: 180 IEGNQYEFRVLAVNKGGPGEPSD------PTAPHIARAKKVSP 216
G +Y ++A+N P +P
Sbjct: 247 TPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATP 289
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 139 bits (351), Expect = 2e-36
Identities = 56/350 (16%), Positives = 108/350 (30%), Gaps = 54/350 (15%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSPYIN 219
D +L G +Y V V P + ++
Sbjct: 53 VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITD--- 109
Query: 220 RDQLSDIKV-----RAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKL 274
S I + + + + I V+ + D S + + +
Sbjct: 110 ----SSIGLRWTPLNSSTIIGYRITVV--AAGEGIPIFEDFVDSSVGYYTVTGLEPGID- 162
Query: 275 KVFDSKRGDSGIYTLAVK--NSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWR 332
Y ++V + G T +P P + L+ +NI + + W
Sbjct: 163 ------------YDISVITLINGGESAPTTLTQQTAVPPPTD--LRFTNIGPDTMRVTWA 208
Query: 333 APRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIG 390
P D+ +++V ++ V +S + NL+ G +Y V +V +
Sbjct: 209 PPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH 265
Query: 391 ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
ES PL T D P +D + + W P+ + I+ Y I P
Sbjct: 266 ESTPLRG-RQKTG------LDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHP 314
Query: 451 KYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
++ + VP + + ++ +L G EY ++A+N
Sbjct: 315 EHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQ 364
Score = 121 bits (306), Expect = 3e-30
Identities = 55/342 (16%), Positives = 101/342 (29%), Gaps = 58/342 (16%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-VSGTYT 368
SPP +N + W DI Y + + + + V +
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 369 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 426
+NL G +YN V V ES+P+ S + + + D +
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVKDDKESVPI---SDTIIPE----VPQLTDLSFVDITDSSI 112
Query: 427 DLEWTPPKKDGGSPISQYIIE-KKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIA 485
L WTP S I Y I G V +++ +V L+ G +Y+ VI
Sbjct: 113 GLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVIT 169
Query: 486 VNKGGPGEPSKASAPVTCKP----------------RFVAP---VIDQYAL--QDMTAQE 524
+ GG P+ + P + P + + + + +E
Sbjct: 170 LINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEE 229
Query: 525 YNPFITLLFKN--FVLD--------------LNEGLKSMVKLSYIDNVPGKPSKPEATDV 568
+++ + VL + E +S P+ + +D+
Sbjct: 230 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDI 289
Query: 569 DKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
+ + W P + I GY + + P
Sbjct: 290 TANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVP 327
Score = 90.6 bits (225), Expect = 9e-20
Identities = 53/354 (14%), Positives = 91/354 (25%), Gaps = 62/354 (17%)
Query: 70 GNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIA 123
D +L G +Y V V P +
Sbjct: 43 NGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDL 102
Query: 124 RAKKGKCYHLVGTLLKDSIYEQLK----RSGLFDQFHLC------PIWEKCAQTEGDTPK 173
+ SI L+ S + + I +
Sbjct: 103 SFV---------DITDSSI--GLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGY 151
Query: 174 GKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSPYINRDQLSDIK 227
V L G Y+ V+ + GG P+ P R + P ++
Sbjct: 152 YTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGP-------DTMR 204
Query: 228 V--RAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDS 284
V + + V P+ +E + S + + N T+
Sbjct: 205 VTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTE----------- 253
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILH 344
Y ++V + + + T + S+IT +S + W APR I
Sbjct: 254 --YVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR----ATITG 307
Query: 345 YVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLV 396
Y + V + NL G +Y + A+N ES L+
Sbjct: 308 YRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI 361
Score = 51.7 bits (124), Expect = 4e-07
Identities = 21/165 (12%), Positives = 41/165 (24%), Gaps = 23/165 (13%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
I + V L G Y+ V+ + GG P+ T
Sbjct: 133 AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPP-- 190
Query: 129 KCYHL-VGTLLKDSIYEQLK----RSGLFDQFHLC------PIWEKCAQTEGDTPKGKVL 177
L + D++ ++ S F + +
Sbjct: 191 --TDLRFTNIGPDTM--RVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 246
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 216
+L+ G +Y V +V + P +P ++
Sbjct: 247 NLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITA 291
Score = 36.7 bits (85), Expect = 0.018
Identities = 5/47 (10%), Positives = 14/47 (29%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115
+ + + + +L G +Y ++A+N
Sbjct: 314 PEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL 360
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 133 bits (337), Expect = 3e-36
Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 18/202 (8%)
Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM 360
+ + +++P P + L +IT SS L W + I+ Y + + G +
Sbjct: 15 VPRGSHMEVPQPTD--LSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFE 69
Query: 361 GDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTV 418
V + L G DY+ V V GES P + +T + P
Sbjct: 70 DFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTP----TTLTQQTA---VPPPTDLRF 122
Query: 419 TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITATSVPDLKEGE 477
T+ G D + + W PP ++ +++ P + A + + + A + +L G
Sbjct: 123 TNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 179
Query: 478 EYEFRVIAVNKGGPGEPSKASA 499
EY V +V + P +
Sbjct: 180 EYVVSVSSVYEQHESTPLRGRQ 201
Score = 80.3 bits (198), Expect = 2e-17
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEK 457
S + + +P + D + L WTP S I Y I
Sbjct: 12 SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIF 68
Query: 458 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
V +++ +V L+ G +Y+ V V GG P+ +
Sbjct: 69 EDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQ 110
Score = 51.4 bits (123), Expect = 1e-07
Identities = 21/153 (13%), Positives = 36/153 (23%), Gaps = 27/153 (17%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHI 122
I + V L G Y+ V V GG P+ P
Sbjct: 60 AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTD 119
Query: 123 ARAKKGKCYHLVGTLLKDSIYEQLK----RSGLFDQFHLC------PIWEKCAQTEGDTP 172
R + D++ ++ S F +
Sbjct: 120 LR---------FTNIGPDTM--RVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDN 168
Query: 173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
+ +L+ G +Y V +V + P
Sbjct: 169 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 201
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 119 bits (301), Expect = 3e-32
Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY---GPW 455
S T + P+ P +TD V L WTP D SPI+++IIE + G W
Sbjct: 6 SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGD-DNNSPITKFIIEYEDAMHKPGLW 64
Query: 456 EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
V T +L Y FRV+AVN G PS+AS K
Sbjct: 65 HHQTEVSGTQTTA-QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKAS 114
Score = 97.8 bits (244), Expect = 2e-24
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEK--MDME 353
G V D+P+PP + ++ S L W P DD + I +++E +
Sbjct: 3 SGSSGPTPAPVYDVPNPPFDL-ELTDQLDKSVQLSWT-PGDDNNSPITKFIIEYEDAMHK 60
Query: 354 TGRWVPMGDVSGTYTRA-ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD--PFGRP 410
G W +VSGT T A NL +Y+FRV AVN IG+SLP K P P
Sbjct: 61 PGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120
Score = 54.7 bits (132), Expect = 3e-09
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
VP P E TD +++ W + S I + +E + + +
Sbjct: 16 VPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQ 74
Query: 616 S 616
+
Sbjct: 75 T 75
Score = 52.0 bits (125), Expect = 2e-08
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 90 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 125
L+L Y FRV+AVN G PS+ + ++ +A
Sbjct: 78 QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113
Score = 52.0 bits (125), Expect = 2e-08
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 211
L+L Y FRV+AVN G PS+ + ++ +A
Sbjct: 78 QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 118 bits (298), Expect = 7e-32
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY------ 452
I++ P P P +++ G V L++ P DG + IS++++E +
Sbjct: 7 GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEE 65
Query: 453 -GPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+ P + VPDL Y FR+ VN G PS+ S +
Sbjct: 66 WLLIHQLSNEPDARSME-VPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQ 118
Score = 83.5 bits (207), Expect = 2e-19
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 296 GTDKGTAKVTV---LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM 352
G+ + ++ ++P PP SNI S L++R P DG T I ++VE
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNL-GISNIGPRSVTLQFR-PGYDGKTSISRWLVEAQVG 58
Query: 353 ETGRW-------VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
G + +L Y+FR++ VN +G S P
Sbjct: 59 VVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPP 107
Score = 53.9 bits (130), Expect = 5e-09
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 75 WEKCAQ--TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 121
W Q E D +V DL Y FR+ VN G PS P+
Sbjct: 66 WLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 114
Score = 53.9 bits (130), Expect = 5e-09
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 161 WEKCAQ--TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
W Q E D +V DL Y FR+ VN G PS P+
Sbjct: 66 WLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 114
Score = 53.1 bits (128), Expect = 8e-09
Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
+PG P+ +++ + ++++ +G ++I + VE + G
Sbjct: 17 LPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEG 63
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 121 bits (306), Expect = 1e-31
Identities = 36/205 (17%), Positives = 60/205 (29%), Gaps = 15/205 (7%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPMGDVSGT 366
+ + W P + Y V+ + D
Sbjct: 3 HMDLGAPQNPNAKAAGSRKIHFNWLPPSGK----PMGYRVKYWIQGDSESEAHLLDSKVP 58
Query: 367 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 426
NL DY +V A GE S ++ + P PG+
Sbjct: 59 SVELTNLYPYCDYEMKVCAYGAQGEGPY---SSLVSCRTHQEVPSEPGRLAFNVVSSTVT 115
Query: 427 DLEWTPPKKDGGSPISQYII------EKKPKYGPWEKACIVPANITATSVPDLKEGEEYE 480
L W P + G I+ Y + + GP +K + + +L+E + Y
Sbjct: 116 QLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 174
Query: 481 FRVIAVNKGGPGEPSKASAPVTCKP 505
+ V A N G G +A + +P
Sbjct: 175 YTVKARNGAGWGPEREAIINLATQP 199
Score = 83.3 bits (206), Expect = 3e-18
Identities = 32/204 (15%), Positives = 55/204 (26%), Gaps = 55/204 (26%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
P P G + W PP Y ++ + +A ++ + + + + +
Sbjct: 9 PQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTN 64
Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLL 532
L +YE +V A G G S+ V+C+ T QE
Sbjct: 65 LYPYCDYEMKVCAYGAQGEGPY---SSLVSCR----------------THQE-------- 97
Query: 533 FKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYE 592
VP +P + V ++ W +P G I YE
Sbjct: 98 -----------------------VPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYE 133
Query: 593 VERRERTSGRWIKITPDPIRTKTS 616
V +
Sbjct: 134 VCYGLVNDDNRPIGPMKKVLVDNP 157
Score = 60.6 bits (147), Expect = 2e-10
Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 18/177 (10%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHL- 133
+ + P ++ +L YE +V A G G S + + + L
Sbjct: 47 ESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLA 106
Query: 134 VGTLLKDSI----------------YEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVL 177
+ YE + + D +K +
Sbjct: 107 FNVVSSTVTQLSWAEPAETNGEITAYE-VCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIE 165
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNF 234
+L E Y + V A N G G + + K+ + + ++G ++
Sbjct: 166 NLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDY 222
Score = 34.0 bits (78), Expect = 0.086
Identities = 12/57 (21%), Positives = 15/57 (26%), Gaps = 4/57 (7%)
Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
G P P A I W P +G GY V+ + D
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP--SG--KPMGYRVKYWIQGDSESEAHLLDSKVP 58
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 117 bits (296), Expect = 1e-31
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIV 461
D PG+P + + V L+W P+ GG I+ YI+EK+ W KA
Sbjct: 4 HHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFS 63
Query: 462 PANITATSVPDLKEGEEYEFRVIAVNK-GGPGEPSKASAPVTCKPRFVA 509
+V L E YEFRVIA N G PS+ S +TC+ A
Sbjct: 64 NILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 98.6 bits (246), Expect = 7e-25
Identities = 35/101 (34%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
PP P P NIT+ + L+W P GG I Y+VEK D+ GRW+ +
Sbjct: 11 IDPPGKP-VPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 69
Query: 370 A--ENLIEGHDYNFRVKAVNKIGE-SLPLVCQSPITAKDPF 407
L E Y FRV A N G S P IT +D
Sbjct: 70 FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110
Score = 73.5 bits (181), Expect = 4e-16
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 555 NVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTK 614
+ P KP ++ + + +KW +P GG I Y VE+R+ +GRW+K I
Sbjct: 9 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN 68
Query: 615 T 615
Sbjct: 69 E 69
Score = 53.1 bits (128), Expect = 7e-09
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 49 WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
W K T G +++ + + W K + + V L E YEFRV+A N
Sbjct: 31 WAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNA 90
Query: 109 -GGPGEPSDPTAPHIAR 124
G PS+P+ R
Sbjct: 91 AGAISPPSEPSDAITCR 107
Score = 52.7 bits (127), Expect = 9e-09
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK-GGPGEPSDPTAPHIAR 210
W K + + V L E YEFRV+A N G PS+P+ R
Sbjct: 57 WLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 122 bits (308), Expect = 2e-31
Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 13/190 (6%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
P+ L+ + T +S +LEW + + Y + VP G T T
Sbjct: 105 IDAPKN-LRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTT 163
Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 429
+L+ G +Y + AV +S+P + + A+ D P VT + + L
Sbjct: 164 LTDLVPGTEYGVGISAVMNSKQSIP----ATMNARTE---LDSPRDLMVTASSETSISLI 216
Query: 430 WTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG 489
WT PI Y I P G + VP + T+ ++ DL+ G EY + A
Sbjct: 217 WTKAS----GPIDHYRITFTPSSGISSEV-TVPRDRTSYTLTDLEPGAEYIISITAERGR 271
Query: 490 GPGEPSKASA 499
S A
Sbjct: 272 QQSLESTVDA 281
Score = 119 bits (300), Expect = 3e-30
Identities = 53/323 (16%), Positives = 82/323 (25%), Gaps = 78/323 (24%)
Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG 355
G G + V P + +++ + +EW PR +L Y + E G
Sbjct: 4 GISGGGGGIPV---IDGPTQ-ILVRDVSDTVAFVEWTPPRAKVDFILLKYGLV--GGEGG 57
Query: 356 RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQ 415
+ + + L G Y + AV ES S D P
Sbjct: 58 KTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDA----SSTQFTTE---IDAPKN 110
Query: 416 PTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVP---ANITATSVPD 472
V +DLEW + + +Y + G +VP T T++ D
Sbjct: 111 LRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTD 166
Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLL 532
L G EY + AV P T R T
Sbjct: 167 LVPGTEYGVGISAVMNSKQSI------PATMNAR-----------------------T-- 195
Query: 533 FKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYE 592
P T + I + W + +G I Y
Sbjct: 196 -----------------------ELDSPRDLMVTASSETSISLIWTKA--SG--PIDHYR 228
Query: 593 VERRERTSGRWIKITPDPIRTKT 615
+ + P + T
Sbjct: 229 ITFTPSSGISSEVTVPRDRTSYT 251
Score = 71.8 bits (176), Expect = 5e-14
Identities = 30/247 (12%), Positives = 68/247 (27%), Gaps = 40/247 (16%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKV 214
+ + + + V L G++YE + AV + S + AP R
Sbjct: 57 GKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSR 116
Query: 215 SPYINRDQLSDIKVR------AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND 268
+ + + + ++ + + + + I + + +
Sbjct: 117 TA-------TSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIG--PTTKTTLTDL 167
Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTVLDIPSPPEGPLKPSNITKSSC 327
T+ Y + + + + A + P L + +++S
Sbjct: 168 VPGTE-------------YGVGISAVMNSKQSIPATMNARTELDSPRD-LMVTASSETSI 213
Query: 328 NLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVN 387
+L W I HY + T +L G +Y + A
Sbjct: 214 SLIWTKASG----PIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAER 269
Query: 388 KIGESLP 394
+SL
Sbjct: 270 GRQQSLE 276
Score = 49.0 bits (117), Expect = 2e-06
Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 30/163 (18%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKG 128
+ + + + V L G++YE + AV + S + AP R
Sbjct: 57 GKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLR---- 112
Query: 129 KCYHLVGTLLKDSIYEQLKRS-GLFDQFHLC--------PIWEKCAQTEGDTPKGKVLDL 179
VG+ S+ + S ++ + + G T K + DL
Sbjct: 113 -----VGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDL 167
Query: 180 IEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 216
+ G +Y + AV P+ + +P S
Sbjct: 168 VPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSE 210
Score = 47.5 bits (113), Expect = 5e-06
Identities = 26/137 (18%), Positives = 40/137 (29%), Gaps = 20/137 (14%)
Query: 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKGKCYHL 133
+ G T K + DL+ G +Y + AV P+ + +P
Sbjct: 154 KGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLM--------- 204
Query: 134 VGTLLKDSIYEQ-LKRSGLFDQFHLC----PIWEKCAQTEGDTPKGKVLDLIEGNQYEFR 188
V + SI K SG D + + D + DL G +Y
Sbjct: 205 VTASSETSISLIWTKASGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIIS 264
Query: 189 VLAVNKGGPGEPSDPTA 205
+ A S A
Sbjct: 265 ITAERGRQQSLESTVDA 281
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 116 bits (293), Expect = 2e-31
Identities = 25/108 (23%), Positives = 41/108 (37%)
Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVP 462
P P P +T G + L+W+ P YI+E + + +
Sbjct: 1 GSSGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD 60
Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
A +V +L+ +Y+F+VIA N G PS+ TC +
Sbjct: 61 GEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 103 bits (259), Expect = 1e-26
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 2/107 (1%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV-PMGDV 363
+ PS P P + + +L+W P + + Y++E + +G P D
Sbjct: 3 SGSSGPSMPASP-VLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG 61
Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
+NL Y F+V A N G+S P T D
Sbjct: 62 EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 67.8 bits (166), Expect = 4e-14
Identities = 14/59 (23%), Positives = 21/59 (35%)
Query: 555 NVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
+ P P+ P T + ++W +P Y +E E TSG K D
Sbjct: 6 SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL 64
Score = 55.0 bits (133), Expect = 1e-09
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 38 AGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN 97
AG L+L+ W K + T D +L++ E K G+ V +L
Sbjct: 19 AGITWLSLQ--WSKPSGTPSDEGISYILEMEEETSGYGFKPKYD-GEDLAYTVKNLRRST 75
Query: 98 QYEFRVLAVNKGGPGEPSDPTAPHIAR 124
+Y+F+V+A N G PS+
Sbjct: 76 KYKFKVIAYNSEGKSNPSEVVEFTTCP 102
Score = 51.6 bits (124), Expect = 2e-08
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
V +L +Y+F+V+A N G PS+ S
Sbjct: 67 TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 117 bits (294), Expect = 3e-31
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WE 456
P+ P +PT++ + V + W P +GG PI + +E K W
Sbjct: 7 GSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRG-NGGFPIQSFRVEYKKLKKVGDWI 65
Query: 457 KAC-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
A +P + + + L++G Y+FRV A+N G EPS S P
Sbjct: 66 LATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Score = 93.2 bits (232), Expect = 8e-23
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMET 354
G+ L P P+ P S +++S + W PR +GG I + VE K +
Sbjct: 4 GSSGSQPDHGRLSPPEAPDRP-TISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKV 61
Query: 355 GRWVPMGD-VSGTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
G W+ + + E L +G Y FRV+A+N +GES P P
Sbjct: 62 GDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Score = 57.0 bits (138), Expect = 3e-10
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 75 WEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 125
W ++ L +G Y+FRV A+N G EPS P+ P++
Sbjct: 64 WILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Score = 57.0 bits (138), Expect = 3e-10
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 161 WEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 211
W ++ L +G Y+FRV A+N G EPS P+ P++
Sbjct: 64 WILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Score = 56.6 bits (137), Expect = 4e-10
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRE-RTSGRWIKITPDPIRTK 614
P P +P + + + + W NGG I+ + VE ++ + G WI T ++
Sbjct: 17 PPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 75
Query: 615 TS 616
S
Sbjct: 76 LS 77
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 115 bits (291), Expect = 5e-31
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIV 461
+ G P TV D L+W PP + G I Y++E + W A
Sbjct: 2 SSGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61
Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
P +V DL G FRV+ VN G EP+ PVT + +
Sbjct: 62 PVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 100 bits (251), Expect = 1e-25
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 302 AKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG 361
S P+ ++T ++ L+WR P G I Y+VE + WVP
Sbjct: 1 GSSGSSGPTSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPAN 59
Query: 362 D--VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPG 414
V ++L G FRV VN G S P P+T ++ G
Sbjct: 60 KEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRES---GPSSG 111
Score = 70.9 bits (174), Expect = 4e-15
Identities = 15/60 (25%), Positives = 20/60 (33%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P DV +KW+ P G I GY VE S W+ +P+
Sbjct: 8 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67
Score = 58.9 bits (143), Expect = 5e-11
Identities = 16/56 (28%), Positives = 21/56 (37%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
W + + V DL G + FRV+ VN G EP+ P R S
Sbjct: 55 WVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 57.4 bits (139), Expect = 2e-10
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
W + + V DL G + FRV+ VN G EP+ P R
Sbjct: 55 WVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 104
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 115 bits (290), Expect = 6e-31
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 1/104 (0%)
Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIV 461
P TV V + W PP G + + Y++E + W A
Sbjct: 1 GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKD 60
Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+ T ++ L + RV AVN G EP S P+ K
Sbjct: 61 LIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE 104
Score = 100 bits (251), Expect = 1e-25
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTY 367
SPP L ++T ++ + WR P G + YV+E T W+ + T
Sbjct: 8 TSPP-TLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66
Query: 368 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
L RVKAVN G S P PI K+
Sbjct: 67 FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKES 105
Score = 69.7 bits (171), Expect = 9e-15
Identities = 12/60 (20%), Positives = 21/60 (35%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P+ V + ++W+ P G + + GY +E + WI D I
Sbjct: 7 GTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66
Score = 56.2 bits (136), Expect = 4e-10
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
W + D K + L + RV AVN G EP + P + + S
Sbjct: 54 WIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSS 109
Score = 56.2 bits (136), Expect = 4e-10
Identities = 17/76 (22%), Positives = 24/76 (31%)
Query: 49 WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
W G VL+ W + D K + L + RV AVN
Sbjct: 28 WRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNA 87
Query: 109 GGPGEPSDPTAPHIAR 124
G EP + P + +
Sbjct: 88 AGASEPKYYSQPILVK 103
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 115 bits (291), Expect = 7e-31
Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG 355
G+ T D P P P I S + W P+D+GG I YVVE + G
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Query: 356 -RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPG 414
+W + + + L G Y RV ++ G+S + + P G
Sbjct: 64 NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVS---ESLLVQTPAVSGPSSG 120
Score = 99.0 bits (247), Expect = 6e-25
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 8/116 (6%)
Query: 390 GESLPLVCQSPITAKDPFGRPDRPGQPTVT-DWGKDHVDLEWTPPKKDGGSPISQYIIEK 448
G S T D +P P +P+V + W PPK +GG+ I++Y++E
Sbjct: 1 GSSGSSGVVEFTTCPD---KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEM 57
Query: 449 K--PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
WE L G Y RV ++ GG S++ T
Sbjct: 58 AEGSNGNKWEMIYSGAT--REHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 111
Score = 56.3 bits (136), Expect = 5e-10
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 556 VPGKPSKPEAT-DVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG-RWIKITPDPIRT 613
PG P KP + KI W P NGG+ I Y VE E ++G +W I R
Sbjct: 17 KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATRE 76
Score = 50.1 bits (120), Expect = 9e-08
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 121
WE G T + L G Y RV ++ GG S+
Sbjct: 66 WEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110
Score = 50.1 bits (120), Expect = 9e-08
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
WE G T + L G Y RV ++ GG S+
Sbjct: 66 WEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 115 bits (289), Expect = 1e-30
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 294 SWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME 353
S G+ + + ++D P PP +K ++ + L W P+DDG I Y ++K D +
Sbjct: 2 SSGSSGASIDIQIIDRPGPP-QIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKK 60
Query: 354 TGRWVPMGD-VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVC--QSPITAKDP 406
+ W + + T L+ G++Y FRV + N G S +S + A+D
Sbjct: 61 SMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDG 116
Score = 108 bits (272), Expect = 2e-28
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK-PKYGPWEKACIVPANIT 466
RP P + D ++V L WTPPK DG + I+ Y I+K K W +
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS 75
Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
AT + +L G EY FRV + N G E + + R
Sbjct: 76 AT-ITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIAR 114
Score = 62.8 bits (153), Expect = 3e-12
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTK 614
PG P + DV +++ + W P +G +AI GY +++ ++ S W + RT
Sbjct: 17 RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS 75
Score = 60.5 bits (147), Expect = 2e-11
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCY 131
W + +L+ GN+Y FRV + N G E + T A+ GK Y
Sbjct: 64 WFTVI-EHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIY 119
Score = 58.5 bits (142), Expect = 8e-11
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 217
W + +L+ GN+Y FRV + N G E + T A+ Y
Sbjct: 64 WFTVI-EHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIY 119
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 113 bits (285), Expect = 4e-30
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 408 GRPDRPGQP--TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC-IVPAN 464
P P P T++ + ++L WT P DG SP+ +YI+E PW V
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPK 74
Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
T+ +V L Y+FR+ AVN G G+ SK + V+
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 115
Score = 108 bits (273), Expect = 2e-28
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 296 GTDKGTAKVTVLDIPSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET 354
G+ +A + V +P PE P S + + + NL W P DG + ++ Y++E +
Sbjct: 4 GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNA 62
Query: 355 GRWVPMGDVSGTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
V + V T L+ Y FR+ AVN +G+ ++ +
Sbjct: 63 PWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116
Score = 57.8 bits (140), Expect = 2e-10
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 121
E N P A + V L+ Y+FR+ AVN G G+ S T
Sbjct: 59 ENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111
Score = 56.2 bits (136), Expect = 6e-10
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 556 VPGKPSKPEAT--DVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
+P P P AT V++ I + W +P +G S + Y +E E + + + +
Sbjct: 17 LPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKA 75
Query: 614 KT 615
+
Sbjct: 76 TS 77
Score = 55.8 bits (135), Expect = 8e-10
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
A + V L+ Y+FR+ AVN G G+ S T
Sbjct: 65 TVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 113 bits (284), Expect = 5e-30
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 1/107 (0%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 458
PD P P + + K+ + L+W P D GS I +++E G E
Sbjct: 7 GAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFC 65
Query: 459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+ + L +FR+ A N G S+ T
Sbjct: 66 QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
Score = 99.0 bits (247), Expect = 5e-25
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMET 354
G+ T+ P P P + +N TK+S L+W+AP D G+ I ++V+E
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPP-RIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGN 61
Query: 355 GRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
G + S + L FR+ A N G S T+
Sbjct: 62 GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCS 113
Score = 51.6 bits (124), Expect = 2e-08
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P P+ P + K+ + ++W+ P S+ GS I+ + +E E G K
Sbjct: 17 EPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDE-GKGNGEFCQCYMGSQKQ 74
Score = 50.1 bits (120), Expect = 8e-08
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 121
E C G + K+ L +FR+ A N G S+ +
Sbjct: 62 GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYY 108
Score = 50.1 bits (120), Expect = 8e-08
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
E C G + K+ L +FR+ A N G S+ +
Sbjct: 62 GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYY 108
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 111 bits (279), Expect = 3e-29
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WE 456
S D P P +P VTD K+ V L W P G P S YIIE + W+
Sbjct: 5 SSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQ 63
Query: 457 KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
T V L+ Y F V A+N G +PS S PV +
Sbjct: 64 TVANHVKTTLYT-VRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
Score = 99.0 bits (247), Expect = 5e-25
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM-ETGRWVP 359
+ D+P PP P + +++TK+S L W+ P G Y++E + W
Sbjct: 7 GKNYDLSDLPGPPSKP-QVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQT 64
Query: 360 MGD-VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
+ + V T L Y F V+A+N G S P P+ +D
Sbjct: 65 VANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
Score = 56.2 bits (136), Expect = 5e-10
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
+PG PSKP+ TDV K+ + + WQ P + G Y +E ++ + + ++T
Sbjct: 15 LPGPPSKPQVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTL 73
Score = 54.3 bits (131), Expect = 3e-09
Identities = 13/56 (23%), Positives = 18/56 (32%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
+ T V L Y F V A+N G +PS + P + S
Sbjct: 61 SWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116
Score = 53.5 bits (129), Expect = 5e-09
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
+ T V L Y F V A+N G +PS + P +
Sbjct: 61 SWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 115 bits (289), Expect = 9e-29
Identities = 48/316 (15%), Positives = 83/316 (26%), Gaps = 75/316 (23%)
Query: 312 PPEGP-----LKPSNITKS-SCNLEWRA-PRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
P + P + PS+ + L W+ P + IL Y V ++ + +
Sbjct: 4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYT 59
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
T+ + Y + N +G+S + +T + P +
Sbjct: 60 VNATKLTVNLTNDRYLATLTVRNLVGKSDA----AVLTIPACDFQATHPVMDLKAFPKDN 115
Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKACIVPANITATSVPDLKEGEEYE 480
+ +EWT P++ + +YI+E + +L E + Y
Sbjct: 116 MLWVEWTTPRE----SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYL 171
Query: 481 FRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDL 540
V V GPG P I Y Q
Sbjct: 172 ITVTPVYADGPGSPE---------------SIKAYLKQA--------------------- 195
Query: 541 NEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQ-PISNGGSAIKGYEVERRERT 599
P K V K+ ++W Q P+ I+ Y + R
Sbjct: 196 ---------------PPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII 240
Query: 600 SGRWIKITPDPIRTKT 615
T
Sbjct: 241 GNETAVNVDSSHTEYT 256
Score = 114 bits (287), Expect = 2e-28
Identities = 44/210 (20%), Positives = 63/210 (30%), Gaps = 12/210 (5%)
Query: 297 TDKGTAKVTVLDIPSPPEGPLKP-----SNITKSSCNLEWRAPRDDGGTDILHY-VVEKM 350
G + VL IP+ P + + +EW PR+ IL + V+
Sbjct: 82 NLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDK 141
Query: 351 DMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
W NL E Y V V G P I A P
Sbjct: 142 APCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP----ESIKAYLKQAPP 197
Query: 411 DRPGQPTVTDWGKDHVDLEWTP-PKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
+ GK+ LEW P I Y I + G E A V ++ T +
Sbjct: 198 SKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG-NETAVNVDSSHTEYT 256
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
+ L Y R+ A G + + +
Sbjct: 257 LSSLTSDTLYMVRMAAYTDEGGKDGPEFTF 286
Score = 51.0 bits (122), Expect = 4e-07
Identities = 32/219 (14%), Positives = 55/219 (25%), Gaps = 24/219 (10%)
Query: 185 YEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP 244
Y + N G + + T P D+K N + V
Sbjct: 74 YLATLTVRNLVGKSDAAVLTIPACDFQATHPV-------MDLKAFPKDN---MLWVEWTT 123
Query: 245 IPTK------EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 298
EW ++ + + + T+ + G
Sbjct: 124 PRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGP- 182
Query: 299 KGTAKV----TVLDIPSPPEGPLKPSNITKSSCNLEWRA-PRDDGGTDILHYVVEKMDME 353
G+ + PS ++ + K+ LEW P D I +Y + +
Sbjct: 183 -GSPESIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII 240
Query: 354 TGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES 392
D S T +L Y R+ A G
Sbjct: 241 GNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGK 279
Score = 49.0 bits (117), Expect = 2e-06
Identities = 22/135 (16%), Positives = 34/135 (25%), Gaps = 32/135 (23%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPT----------APHIARAKKGK-----------C 130
+L E Y V V GPG P P + K GK
Sbjct: 163 NLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPV 222
Query: 131 YHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 190
G + +I+ + E + + + L Y R+
Sbjct: 223 DVQNGFIRNYTIFYRTIIG-----------NETAVNVDSSHTEYTLSSLTSDTLYMVRMA 271
Query: 191 AVNKGGPGEPSDPTA 205
A G + + T
Sbjct: 272 AYTDEGGKDGPEFTF 286
Score = 48.3 bits (115), Expect = 3e-06
Identities = 22/122 (18%), Positives = 29/122 (23%), Gaps = 20/122 (16%)
Query: 99 YEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSI-------------YEQ 145
Y + N G + + T P L + + Y
Sbjct: 74 YLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYIL 133
Query: 146 LKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVL--DLIEGNQYEFRVLAVNKGGPGEPSDP 203
+ C Q E T L +L E Y V V GPG P
Sbjct: 134 EWC--VLSDKAPCITDW---QQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI 188
Query: 204 TA 205
A
Sbjct: 189 KA 190
Score = 36.3 bits (84), Expect = 0.021
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
E + + + L Y R+ A G + + T
Sbjct: 242 NETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTF 286
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 108 bits (273), Expect = 1e-28
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
P P VT+ V L W P++ Y I+ + + T
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTR 62
Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
S+ L EY FRV+AVN G G PS+A T +
Sbjct: 63 YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQ 100
Score = 83.1 bits (206), Expect = 1e-19
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGDV 363
+ P PP + T +S L W + + +Y ++ T G + + V
Sbjct: 3 SGSSGPKPPIDL-VVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGV 58
Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
+ T L +Y FRV AVN IG P T +
Sbjct: 59 ATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQS 101
Score = 51.9 bits (125), Expect = 1e-08
Identities = 7/58 (12%), Positives = 15/58 (25%), Gaps = 3/58 (5%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
P P T+ + + W + Y ++ R + + T
Sbjct: 7 GPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61
Score = 50.4 bits (121), Expect = 5e-08
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 90 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
+ L ++Y FRVLAVN G G PS+
Sbjct: 65 IGGLSPFSEYAFRVLAVNSIGRGPPSEAVRA 95
Score = 50.4 bits (121), Expect = 5e-08
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
+ L ++Y FRVLAVN G G PS+
Sbjct: 65 IGGLSPFSEYAFRVLAVNSIGRGPPSEAVRA 95
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 108 bits (272), Expect = 2e-28
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 209 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND 268
+ P I D KVRAG + E V G T W+ I + K+ N
Sbjct: 1 GSSGSSGPQI-IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS 59
Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
+ +KL + +++ G YTL V+N G+ + +TV+D P PP G
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
Score = 38.1 bits (89), Expect = 0.001
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P I + D K+ AG +++ + G W +
Sbjct: 7 GPQI-IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI 48
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 109 bits (274), Expect = 1e-27
Identities = 36/208 (17%), Positives = 61/208 (29%), Gaps = 19/208 (9%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAP---RDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
D+P P ++ S ++ + + W + TD +Y V + +
Sbjct: 2 DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYK-NAN 60
Query: 365 GTYTRAE--NLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVT 419
T L Y F V S+ T + P +
Sbjct: 61 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGT---TFELVPTSPPKDVTVVSK 117
Query: 420 DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI---VPANITATSVPDLKEG 476
+ + + W PP + G I+ YII + V N + +L
Sbjct: 118 EGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLD 176
Query: 477 EEYEFRVIAVNKGGPGEPSKASAPVTCK 504
Y F++ A N G G S V +
Sbjct: 177 TPYYFKIQARNSKGMGPM---SEAVQFR 201
Score = 74.5 bits (183), Expect = 2e-15
Identities = 30/205 (14%), Positives = 45/205 (21%), Gaps = 57/205 (27%)
Query: 413 PGQPTVTDWGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
P + D + + W K + Y + K K A +
Sbjct: 8 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 67
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFI 529
V LK YEF V+ S T +
Sbjct: 68 VTGLKPNTLYEFSVMVTKGRRSSTWSM---TAHGT----------------TFEL----- 103
Query: 530 TLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKP---EATDVDKDHIKIKWQQPISNGGS 586
VP P K + + I + WQ P G
Sbjct: 104 --------------------------VPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGK 137
Query: 587 AIKGYEVERRERTSGRWIKITPDPI 611
I GY + + +P+
Sbjct: 138 -ITGYIIYYSTDVNAEIHDWVIEPV 161
Score = 54.4 bits (131), Expect = 1e-08
Identities = 25/157 (15%), Positives = 39/157 (24%), Gaps = 30/157 (19%)
Query: 71 NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT-----------A 119
N P K T V L YEF V+ S
Sbjct: 49 NIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSP 108
Query: 120 PHIARAKKGKC------------YHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQT 167
P + G + IY + + + P+
Sbjct: 109 PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV------- 161
Query: 168 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
G+ ++ +L Y F++ A N G G S+
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV 198
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 105 bits (263), Expect = 3e-27
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 3/109 (2%)
Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIV 461
A+ P P L T DGG+PI +YI++ + K V
Sbjct: 2 AEASMREPSPP-SIHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKKV 59
Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
N + L+ YE ++ A N+ G EP+ + KP +
Sbjct: 60 QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108
Score = 86.8 bits (215), Expect = 1e-20
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
+ PSPP + + S L DDGG IL Y+V+ + V
Sbjct: 4 ASMREPSPPS--IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQ 60
Query: 365 GTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 407
G E+L Y ++ A N++G S P V + + K
Sbjct: 61 GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNI 105
Score = 53.7 bits (129), Expect = 5e-09
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
+ + +G+ + L YE ++ A N+ G EP+ +
Sbjct: 47 SKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNII 106
Query: 129 KCYH 132
K +H
Sbjct: 107 KDHH 110
Score = 52.5 bits (126), Expect = 1e-08
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 217
+ +G+ + L YE ++ A N+ G EP+ + + +
Sbjct: 53 QWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDH 109
Score = 47.9 bits (114), Expect = 4e-07
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 556 VPGKPSKP--EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
+PS P K+ + +GG+ I Y V+ R +
Sbjct: 5 SMREPSPPSIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK 63
Query: 614 KT 615
Sbjct: 64 DH 65
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 103 bits (258), Expect = 1e-26
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 406 PFGRPDRPGQPTVTDW-GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPAN 464
G P P + + L W PP DGGSPIS Y +E P + + +
Sbjct: 5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPR-EVYQGS 63
Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+V L G+ Y FR+ A NK G G S+ T
Sbjct: 64 EVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 104
Score = 100 bits (251), Expect = 1e-25
Identities = 26/97 (26%), Positives = 35/97 (36%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
P P P L W P DGG+ I Y VE +E + S
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT 68
Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
+L+ G Y+FR++A NK+G TA
Sbjct: 69 VSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGS 105
Score = 57.7 bits (140), Expect = 2e-10
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 556 VPGKPSKPEATDVDKDH-IKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITP 608
PG P K I+++W P+ +GGS I Y VE ++
Sbjct: 8 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ 61
Score = 53.5 bits (129), Expect = 4e-09
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 64 VLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 123
+++ + +G + V L+ G Y FR+ A NK G G S+ A
Sbjct: 45 SVEMSPIEKDEPREV--YQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102
Score = 52.3 bits (126), Expect = 1e-08
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 209
+ +G + V L+ G Y FR+ A NK G G S+ A
Sbjct: 56 PREV--YQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 101 bits (253), Expect = 7e-26
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK--------------YG 453
G P P VT + V L W P+ + G PI + ++ + YG
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59
Query: 454 PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+ + + TA+ V DLK Y FR++AV + S SA +P
Sbjct: 60 KPKWNSELGKSFTAS-VTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 110
Score = 68.8 bits (168), Expect = 2e-14
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 20/110 (18%)
Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGD----- 362
PP P + ++ S L W PR+ G I+ + V+ +M + W D
Sbjct: 2 STYPPTPP-NVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59
Query: 363 --------VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
+L H Y FR+ AV ++ S +AK
Sbjct: 60 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE----SNTSAK 105
Score = 52.2 bits (125), Expect = 2e-08
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRER-TSGRWIKIT 607
P+ P T + + + ++W P N G I ++V+ R W
Sbjct: 2 STYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTN 53
Score = 50.3 bits (120), Expect = 7e-08
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 156 HLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
++ K G + V DL + Y FR+LAV + S+ +A
Sbjct: 55 NIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAK 105
Score = 50.3 bits (120), Expect = 7e-08
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 73 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
K G + V DL + Y FR+LAV + S+ +A
Sbjct: 58 YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAK 105
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 100 bits (251), Expect = 2e-25
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 3/118 (2%)
Query: 195 GGPGEPSDPTAPHIARAKKVSPYINRDQL--SDIKVRAGSNFEFDINVIGEPIPTKEWLC 252
G G P R P I + + G + G+P P W
Sbjct: 1 GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60
Query: 253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
+ R + D T V + R DSG Y L+V+ D T ++ V++
Sbjct: 61 GGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 32.4 bits (74), Expect = 0.13
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 3 HIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
+ R G L G+P P V W GG PL
Sbjct: 25 RLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL 65
Score = 30.8 bits (70), Expect = 0.37
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 489 GGPGEPSKASAPVTCKPRFVAPVID 513
G G + PVT + P I
Sbjct: 1 GSSGSSGTLAQPVTIREIAEPPKIR 25
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 98.9 bits (247), Expect = 4e-25
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
PD+ P VT + W P G+ +++Y +E G + +
Sbjct: 6 SGPDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQI--CYCGPGLS 62
Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+ L Y RV A++ G G S+ A VT
Sbjct: 63 YEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT 97
Score = 76.2 bits (188), Expect = 4e-17
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 310 PSPPEGPLKP--SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
S P+ P + + + + W P GTD+ Y +E +E G G
Sbjct: 5 SSGPDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGVE-GSMQICYCGPGLS 62
Query: 368 TRAENLIEGHDYNFRVKAVNKIGESLP 394
+ L Y RV+A++ +G
Sbjct: 63 YEIKGLSPATTYYCRVQALSVVGAGPF 89
Score = 48.5 bits (116), Expect = 2e-07
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
P + P+ T ++ W+ P + G+ + Y +E G P +
Sbjct: 7 GPDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGG-VEGSMQICYCGPGLS 62
Score = 43.4 bits (103), Expect = 1e-05
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 90 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
+ L Y RV A++ G G S+ A
Sbjct: 65 IKGLSPATTYYCRVQALSVVGAGPFSEVVA 94
Score = 43.4 bits (103), Expect = 1e-05
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
+ L Y RV A++ G G S+ A
Sbjct: 65 IKGLSPATTYYCRVQALSVVGAGPFSEVVA 94
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 96.7 bits (241), Expect = 2e-24
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKA---CIVPANI 465
P P V + +++ P+ GG PI +Y E + W +
Sbjct: 7 PSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65
Query: 466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
++ LK Y R+ A+N G GE S AS T
Sbjct: 66 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 85.5 bits (212), Expect = 2e-20
Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 7/103 (6%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-- 362
+ +D PS P S+ +++ P GG IL Y E + W
Sbjct: 2 SHMDTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 59
Query: 363 ---VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 402
L Y R+ A+N G T
Sbjct: 60 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 58.9 bits (143), Expect = 4e-11
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPD 609
P PS + + ++++ +P + GG I Y+ E R W D
Sbjct: 6 TPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 58
Score = 47.8 bits (114), Expect = 4e-07
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
E A+ ++ L Y R+ A+N G GE S +
Sbjct: 49 EEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98
Score = 47.4 bits (113), Expect = 6e-07
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 165 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
A+ ++ L Y R+ A+N G GE S +
Sbjct: 59 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 97.1 bits (242), Expect = 3e-24
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEK 457
++ G PD P + + G + + W P+ + P+ Y +E + G +
Sbjct: 7 GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHR 64
Query: 458 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
I T+ V DL Y FRV A ++ G G +T + + P
Sbjct: 65 LNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRER--EGVITIESQVSGP 115
Score = 88.6 bits (220), Expect = 2e-21
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM--G 361
+P P L S + +S + W+ PR + + Y VE + G +
Sbjct: 12 RLTAGVPDTP-TRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLLNGGELHRLNIP 68
Query: 362 DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
+ + T E+L+ H Y FRV+A ++ G + IT + P
Sbjct: 69 NPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRER--EGVITIESQVSGP 115
Score = 58.2 bits (141), Expect = 1e-10
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
VP P++ + + +++ WQ+P ++GY VE + G ++
Sbjct: 17 VPDTPTRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLLNGGELHRLNIPNPAQ 72
Score = 46.6 bits (111), Expect = 1e-06
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
+ V DL+ + Y FRV A ++ G G +
Sbjct: 62 LHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV 105
Score = 46.6 bits (111), Expect = 1e-06
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+ V DL+ + Y FRV A ++ G G +
Sbjct: 62 LHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV 105
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 102 bits (255), Expect = 3e-24
Identities = 42/304 (13%), Positives = 85/304 (27%), Gaps = 18/304 (5%)
Query: 224 SDIKVRAGSNFEF-----DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD 278
S V G +P P W + ++ + + + + +
Sbjct: 8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPH 67
Query: 279 SKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDG 338
+ + + ++ P+ P N+T SS +W +
Sbjct: 68 LNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETH 127
Query: 339 --GTDILHYVVEKMDMETG-----RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIG- 390
+ L + + +T VP S ++L+ + V+A N +G
Sbjct: 128 LPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGT 187
Query: 391 -ESLPL-VCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK 448
S L + + +P P + L W P + + +
Sbjct: 188 SMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQ-KCELRH 246
Query: 449 KPKYGP--WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
KP+ G W +P + L Y ++ + PG S S + +
Sbjct: 247 KPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTT 306
Query: 507 FVAP 510
A
Sbjct: 307 ERAA 310
Score = 46.8 bits (110), Expect = 1e-05
Identities = 42/317 (13%), Positives = 78/317 (24%), Gaps = 65/317 (20%)
Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYV-VEKMDMETGRWVPMGDVSGTY 367
S P L IT +SC ++ D IL + E + + G
Sbjct: 6 SVSAPIVHLG-DPIT-ASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESII 63
Query: 368 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT-VTDWGKDHV 426
T + + G SL ++ Q + A P P P + + + +
Sbjct: 64 TLPHLNHTQAFLSCSLNW----GNSLQILDQVELRAGYP---PAIPHNLSCLMNLTTSSL 116
Query: 427 DLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT-------SVPDLKEGEEY 479
+W P + P S + K + + + + L +
Sbjct: 117 ICQWEPGP-ETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNM 175
Query: 480 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLD 539
V A N G + + P++
Sbjct: 176 GIWVQAENALGTSMSPQLCLDPMDVVKLEPPML--------------------------- 208
Query: 540 LNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVE-RRER 598
PEA +++ W+ K E+ + +R
Sbjct: 209 -----------------RTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK-CELRHKPQR 250
Query: 599 TSGRWIKITPDPIRTKT 615
W + P P+
Sbjct: 251 GEASWALVGPLPLEALQ 267
Score = 37.2 bits (85), Expect = 0.012
Identities = 14/142 (9%), Positives = 28/142 (19%), Gaps = 24/142 (16%)
Query: 90 VLDLIEGNQYEFRVLAVNKGGPGEPSD----------PTAPHIARAKKGKCYHLVGTLLK 139
L+ V A N G P +
Sbjct: 166 RKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMD---PSPEAAPPQA 222
Query: 140 DSIYEQLKRSGLFDQFHLC-----------PIWEKCAQTEGDTPKGKVLDLIEGNQYEFR 188
+ + + W + + ++ L+ Y +
Sbjct: 223 GCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQ 282
Query: 189 VLAVNKGGPGEPSDPTAPHIAR 210
+ + PG SD + R
Sbjct: 283 IRCIRWPLPGHWSDWSPSLELR 304
Score = 34.1 bits (77), Expect = 0.098
Identities = 8/56 (14%), Positives = 18/56 (32%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
+ W + + ++ L+ Y ++ + PG SD + R
Sbjct: 249 QRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 96.0 bits (239), Expect = 7e-24
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 406 PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANI 465
P P V + +++ P+ GG PI +Y E + + A
Sbjct: 4 GSSGPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 62
Query: 466 TATS----VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+ + LK Y R+ A+N G GE S AS T
Sbjct: 63 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103
Score = 83.3 bits (206), Expect = 2e-19
Identities = 23/119 (19%), Positives = 33/119 (27%), Gaps = 12/119 (10%)
Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-- 357
G++ + PS P S+ +++ P GG IL Y E + W
Sbjct: 1 GSSGSSG---PSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS 55
Query: 358 ---VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRP 413
L Y R+ A+N G T P P P
Sbjct: 56 KWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT--QPVREPSAP 112
Score = 56.3 bits (136), Expect = 7e-10
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P PS + + ++++ +P + GG I Y+ E R W D
Sbjct: 7 GPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 65
Query: 616 S 616
Sbjct: 66 E 66
Score = 45.5 bits (108), Expect = 3e-06
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 69 EGNHPIWEKCAQTEGDTPKG---KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
+W + ++ L Y R+ A+N G GE S +
Sbjct: 47 AVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 101
Score = 45.1 bits (107), Expect = 5e-06
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
++ L Y R+ A+N G GE S +
Sbjct: 71 IVGLKPETTYAVRLAALNGKGLGEISAASEF 101
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 95.9 bits (239), Expect = 8e-24
Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 4/122 (3%)
Query: 390 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 449
G S +P T P P + + L W P D Y +
Sbjct: 1 GSSGSSGEHAPATTGPL---PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYT 57
Query: 450 PKYGPWEKAC-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFV 508
+ E+ ++ +L Y FRV+A NK G GE S T
Sbjct: 58 KEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGP 117
Query: 509 AP 510
+
Sbjct: 118 SS 119
Score = 87.9 bits (218), Expect = 5e-21
Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 3/101 (2%)
Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG 355
G+ A T +PS P + S ++ L WR P D D L Y V
Sbjct: 4 GSSGEHAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA 62
Query: 356 RWVPM--GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
R +NL+ Y FRV A NK G
Sbjct: 63 RERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGES 103
Score = 62.0 bits (151), Expect = 5e-12
Identities = 12/58 (20%), Positives = 18/58 (31%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
+P P A+ V IK+ W+ P S+ Y V + R
Sbjct: 17 LPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGE 74
Score = 47.8 bits (114), Expect = 5e-07
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
+ + + +L+ Y FRV+A NK G GE S P
Sbjct: 64 ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPL 107
Score = 47.8 bits (114), Expect = 5e-07
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+ + + +L+ Y FRV+A NK G GE S P
Sbjct: 64 ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPL 107
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 99.9 bits (248), Expect = 3e-23
Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 22/296 (7%)
Query: 224 SDIKVRAGSNFEF-------DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV 276
V+ SNF ++ W N TI K+++ I+N S+
Sbjct: 12 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI-PKEQYTIINRTASSVTFT 70
Query: 277 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRD 336
+ + + + P P+ L EW R+
Sbjct: 71 DIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRE 129
Query: 337 DGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLV 396
E + D + T + + + V+A N +G+
Sbjct: 130 THLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKV---- 185
Query: 397 CQSPITAKDPFGR--PDRPGQPTVT--DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY 452
S DP + P+ P +V + + L WT P + +Y I+ + K
Sbjct: 186 -TSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL-KYNIQYRTKD 243
Query: 453 GP-WEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
W + T +S V DLK EY FR+ + + G G S S +
Sbjct: 244 ASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT 299
Score = 52.9 bits (126), Expect = 1e-07
Identities = 35/301 (11%), Positives = 80/301 (26%), Gaps = 64/301 (21%)
Query: 320 SNITKSSCNLEWRAPRDDGGT-DILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHD 378
SN T + C L+ + + + + + ++ + + + T +
Sbjct: 20 SNFT-AVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ 78
Query: 379 YNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGG 438
+ ++ ++ V I + P P++P + + EW ++
Sbjct: 79 LTCNILTFGQLEQN---VYGITIISGLP---PEKPKNLSCIVNEGKKMRCEWDGGRETHL 132
Query: 439 SPISQYIIEKKPKYGPW-EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA 497
+ + ++ + + + + T E V A N G
Sbjct: 133 E--TNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSD-- 188
Query: 498 SAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVP 557
PV VK P
Sbjct: 189 -------HINFDPV----------------------------------YKVK-------P 200
Query: 558 GKPSKPEATDVD--KDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P + + +K+ W P +K Y ++ R + + W +I P+ +
Sbjct: 201 NPPHNLSVINSEELSSILKLTWTNPSIKSVIILK-YNIQYRTKDASTWSQIPPEDTASTR 259
Query: 616 S 616
S
Sbjct: 260 S 260
Score = 41.3 bits (96), Expect = 6e-04
Identities = 25/162 (15%), Positives = 36/162 (22%), Gaps = 29/162 (17%)
Query: 71 NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD----------PTAP 120
H + A+ + T + E V A N G P P
Sbjct: 144 THKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPP 203
Query: 121 HIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLC----------PIWE--KCAQTE 168
H L + + L W T
Sbjct: 204 HNLSVINS-------EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA 256
Query: 169 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
V DL +Y FR+ + + G G SD +
Sbjct: 257 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 298
Score = 36.3 bits (83), Expect = 0.024
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 69 EGNHPIWE--KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
+ W T V DL +Y FR+ + + G G SD +
Sbjct: 241 TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 298
Score = 27.9 bits (61), Expect = 9.9
Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 10/84 (11%)
Query: 151 LFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD-------- 202
L ++ + A+ + T + E V A N G
Sbjct: 138 LKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYK 197
Query: 203 --PTAPHIARAKKVSPYINRDQLS 224
P PH + +L+
Sbjct: 198 VKPNPPHNLSVINSEELSSILKLT 221
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 92.4 bits (230), Expect = 6e-23
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 273
+ P I IK++AG +++ IG P PT W D + +T
Sbjct: 1 LKPKI-LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
+ +KR DSG Y L VKN G D+ +V V
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 39.2 bits (92), Expect = 3e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P I IK+ AG T + + IG P P W G +
Sbjct: 2 KPKI-LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA 43
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 99.2 bits (246), Expect = 6e-23
Identities = 40/292 (13%), Positives = 72/292 (24%), Gaps = 16/292 (5%)
Query: 228 VRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGI 286
G + V E T W+ S +L + + DSG
Sbjct: 18 SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM---GRRLLLRSVQLHDSGN 74
Query: 287 YTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD--ILH 344
Y+ G GT + V P P+ S+ EW T +L
Sbjct: 75 YSC---YRAGRPAGTVHLLVDVPPEEPQL-SCFRKSPLSNVVCEWGPRSTPSLTTKAVLL 130
Query: 345 YVVEKMDMETGRWVP----MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSP 400
+ P + A + Y + + +G
Sbjct: 131 VRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQ 190
Query: 401 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYGPWEKAC 459
P T + + W P + ++ + + +
Sbjct: 191 GCGILQPDPPANI-TVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTW 249
Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPV 511
+V + D G + ++ A + G GE S+ S P +
Sbjct: 250 MVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRS 301
Score = 38.7 bits (89), Expect = 0.004
Identities = 26/227 (11%), Positives = 48/227 (21%), Gaps = 59/227 (25%)
Query: 395 LVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP 454
+ P P+ P +V EW P ++ +K + P
Sbjct: 83 PAGTVHLLVDVP---PEEPQLSCFRKSPLSNVVCEWGPRS-TPSLTTKAVLLVRKFQNSP 138
Query: 455 WE------KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFV 508
E + + + Y + + G SK S T + +
Sbjct: 139 AEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVG----SKFSKTQTFQGCGI 194
Query: 509 APVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDV 568
P A
Sbjct: 195 LQPD--------------------------------------------PPANITVTAVAR 210
Query: 569 DKDHIKIKWQQPIS-NGGSAIKGYEVERRERTSGRWIKITPDPIRTK 614
+ + + WQ P S N +E+ R S + ++
Sbjct: 211 NPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHH 257
Score = 38.3 bits (88), Expect = 0.006
Identities = 12/141 (8%), Positives = 37/141 (26%), Gaps = 16/141 (11%)
Query: 91 LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDS---IYEQLK 147
+ + + Y + + G T + ++ T + + + +
Sbjct: 161 VPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQ 220
Query: 148 RSGLFDQFHLC------------PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG 195
++ + + + D G ++ ++ A +
Sbjct: 221 DPHSWNSSFYRLRFELRYRAERSKTFTTW-MVKDLQHHCVIHDAWSGLRHVVQLRAQEEF 279
Query: 196 GPGEPSDPTAPHIARAKKVSP 216
G GE S+ + + S
Sbjct: 280 GQGEWSEWSPEAMGTPWTESR 300
Score = 36.0 bits (82), Expect = 0.029
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
+ + + D G ++ ++ A + G GE S+ + +
Sbjct: 240 AERSKTFTTW-MVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGT 294
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 91.0 bits (226), Expect = 3e-22
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
G++ + +P+ P L+ +S L W+ P Y++E D G++
Sbjct: 1 GSS-GSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFRE 58
Query: 360 MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
+ T + L YN RVKA NK G S
Sbjct: 59 VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPY 93
Score = 89.1 bits (221), Expect = 2e-21
Identities = 24/106 (22%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 402 TAKDPFGRPDRP-GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP-KYGPWEKAC 459
++ P P Q + L W P P YI+E G + +
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVY 60
Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+ T +V L Y RV A NK G SK T +
Sbjct: 61 VGKE--TMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104
Score = 48.2 bits (115), Expect = 3e-07
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 64 VLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 123
+L+L +GN + + G V L + Y RV A NK G S +
Sbjct: 45 ILELDDGNGGQFREV--YVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTS 102
Query: 124 RA 125
Sbjct: 103 EG 104
Score = 47.1 bits (112), Expect = 8e-07
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 556 VPGKPS-KPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
VP P + E + + W+QP GY +E + G++ ++
Sbjct: 9 VPATPILQLEECCTHNNSATLSWKQP-PLSTVPADGYILELDDGNGGQFREVYVGK 63
Score = 46.3 bits (110), Expect = 1e-06
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
V L + Y RV A NK G S + S
Sbjct: 68 TVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGPSS 109
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 90.5 bits (225), Expect = 7e-22
Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 385 AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQY 444
+ +IG+ P PI + P P + V L W PP G I Y
Sbjct: 5 SSGRIGDGSPS--HPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAY 61
Query: 445 IIE--KKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
I ++ + + LK Y FR+ A + G GE ++A T
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121
Query: 503 CKP 505
K
Sbjct: 122 EKR 124
Score = 67.4 bits (165), Expect = 9e-14
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVSG- 365
D+P PP G + + +S L W+ P G IL Y + +++ T + ++
Sbjct: 26 DVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPS 83
Query: 366 -TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
A L Y FR+ A + G T K
Sbjct: 84 ARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRS 125
Score = 47.4 bits (113), Expect = 1e-06
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVE-RRERTSGRWIKITPDP 610
VPG P +V +++ WQ P + G I Y++ R T+ +
Sbjct: 27 VPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLA 81
Score = 40.1 bits (94), Expect = 3e-04
Identities = 8/50 (16%), Positives = 14/50 (28%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
+ L + Y FR+ A + G GE ++
Sbjct: 68 NTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117
Score = 39.3 bits (92), Expect = 5e-04
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+ L + Y FR+ A + G GE ++
Sbjct: 74 TATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 89.6 bits (222), Expect = 9e-22
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC-IVPANITAT 468
P + V V L W PP+ + Y++E + WE V T
Sbjct: 7 GLSPPRGLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETEL 65
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
VP L + YEFR++A +PS + T
Sbjct: 66 LVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVST 99
Score = 68.8 bits (168), Expect = 2e-14
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 310 PSPPEGPLKP--SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGT 366
S P + + T L W P + YV+E + W + V+GT
Sbjct: 4 GSSGLSPPRGLVAVRTPRGVLLHWDPPELVPKR-LDGYVLEG-RQGSQGWEVLDPAVAGT 61
Query: 367 YTR--AENLIEGHDYNFRVKAVNKIGESLP 394
T LI+ Y FR+ A S P
Sbjct: 62 ETELLVPGLIKDVLYEFRLVAFAGSFVSDP 91
Score = 48.0 bits (114), Expect = 3e-07
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 75 WEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
WE G + V LI+ YEFR++A +PS+
Sbjct: 51 WEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95
Score = 48.0 bits (114), Expect = 3e-07
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 161 WEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
WE G + V LI+ YEFR++A +PS+
Sbjct: 51 WEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95
Score = 38.8 bits (90), Expect = 6e-04
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
P + + + W P + GY +E R+ S W + P T+T
Sbjct: 7 GLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEGRQG-SQGWEVLDPAVAGTETE 64
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 90.2 bits (224), Expect = 9e-22
Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 458
P P V L W PP + G I + + + E+A
Sbjct: 7 GKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNRERA 65
Query: 459 C-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+V +LK Y FRV+A N+ GPGE S+ T
Sbjct: 66 LNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT 110
Score = 79.4 bits (196), Expect = 4e-18
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG 355
G+ A + +PS P + P ++ L WR P + G +I + V
Sbjct: 4 GSSGKPAIPSSSVLPSAPRD-VVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDN 61
Query: 356 RWVPM--GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
R + NL Y FRV A N+ G
Sbjct: 62 RERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGES 102
Score = 51.7 bits (124), Expect = 2e-08
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
+P P V +++ W+ P G+ I+ + V R + +
Sbjct: 17 LPSAPRDVVPVLVSSRFVRLSWRPPAEAKGN-IQTFTVFFSREGDNRERALNTTQPGSLQ 75
Score = 47.4 bits (113), Expect = 6e-07
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
T+ + + V +L Y FRV+A N+ GPGE S P
Sbjct: 63 ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPI 106
Score = 47.4 bits (113), Expect = 6e-07
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
T+ + + V +L Y FRV+A N+ GPGE S P
Sbjct: 63 ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPI 106
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 89.0 bits (221), Expect = 1e-21
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 413 PGQPT--VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSV 470
PG+PT ++ + L+W PPK+ G + Y ++ + +V
Sbjct: 8 PGRPTMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFTV 66
Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
L +G Y FR+ A N+ G GE +
Sbjct: 67 TGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDL 101
Score = 84.4 bits (209), Expect = 6e-20
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 11/114 (9%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDV 363
+ P P + S ++ L+W P++ G ++L Y ++ + R +
Sbjct: 3 SGSSGPGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGK 59
Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 417
+ L +G Y FR+ A N+ G + P D G +
Sbjct: 60 DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEE----FEKEIRTPE---DLSGPSS 106
Score = 52.0 bits (125), Expect = 1e-08
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
PG+P+ + + ++W P G + GY ++ R I
Sbjct: 7 GPGRPTM-MISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQ 62
Score = 42.8 bits (101), Expect = 2e-05
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
+ + D V L +G Y FR+ A N+ G GE +
Sbjct: 46 RADEARPNTIDFGKDDQ-HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 95
Score = 42.0 bits (99), Expect = 4e-05
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
V L +G Y FR+ A N+ G GE +
Sbjct: 65 TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 95
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 96.8 bits (240), Expect = 2e-21
Identities = 71/475 (14%), Positives = 114/475 (24%), Gaps = 78/475 (16%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD----------PTAPHIAR 124
C Q E + K + L G YE + +++ G P P I
Sbjct: 36 SRSCYQLEKTSIK--IPALSHG-DYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEI-- 90
Query: 125 AKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWE---------------------K 163
L ++Y + G IWE
Sbjct: 91 ------LQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLN 144
Query: 164 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG----GPGEPSDPTAPHIARAKKVSPYIN 219
T + L E + + G E SD + +
Sbjct: 145 GKDTLHHWSWASDMPL-ECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISW--IPDSQT 201
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 279
+ D + GS+ F + + + I D ++ +K+ +
Sbjct: 202 KVFPQDKVILVGSDITFCCVSQEKVLSALIG--------HTNCPLIHLDGENVAIKIRNI 253
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDG- 338
S V + + + P P+ L W R
Sbjct: 254 SV--SASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQ-LNCETHDLKEIICSWNPGRVTAL 310
Query: 339 -GTDILHYVVEKMDMETGRWV---PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
G Y + + + + L YNF + A N +G S
Sbjct: 311 VGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRS-- 368
Query: 395 LVCQSPITAK-DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG 453
QS I P P V D V L W P IE K
Sbjct: 369 ---QSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINF-LCEIEIKKSNS 424
Query: 454 PWEKACI----VPANITATSVPDLKEGEEYEFRVIAV--NKGGPGEPSKASAPVT 502
E+ + V + ++ L Y FR+ + S +T
Sbjct: 425 VQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLT 479
Score = 60.2 bits (145), Expect = 1e-09
Identities = 65/474 (13%), Positives = 124/474 (26%), Gaps = 103/474 (21%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYI-- 218
C Q E + K + L G YE + +++ G +P I
Sbjct: 36 SRSCYQLEKTSIK--IPALSHG-DYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQ 92
Query: 219 --NRDQLSDIKVR---------AGSNFEFDINVIGEPIPTKEWLCND-ITIISKDRFKIV 266
S + ++ SN ++I V+ + L T+ KD
Sbjct: 93 LSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHW 152
Query: 267 NDDKSTKLKV---FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP---- 319
+ L+ F R + W +++ + P
Sbjct: 153 SWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILV 212
Query: 320 -SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHD 378
S+IT C + +L ++ + D + N+
Sbjct: 213 GSDIT-FCCVSQ---------EKVLSALIGHTNCPLIHL----DGENVAIKIRNISVSAS 258
Query: 379 YNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDG- 437
V + + + I A P PD P Q + W P +
Sbjct: 259 SGTNVVFTTEDN-----IFGTVIFAGYP---PDTPQQLNCETHDLKEIICSWNPGRVTAL 310
Query: 438 -GSPISQYIIEKKP--KYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEP 494
G + Y + + KY ++A L E Y F + A N G +
Sbjct: 311 VGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQS 370
Query: 495 SKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYID 554
+ ++++ E +
Sbjct: 371 T----------------------------------------ILVNITEKVY--------- 381
Query: 555 NVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITP 608
P P+ + D++ +K+ W P N E+E ++ S + +
Sbjct: 382 --PHTPTSFKVKDINSTAVKLSWHLP-GNFAKINFLCEIEIKKSNSVQEQRNVT 432
Score = 49.1 bits (116), Expect = 3e-06
Identities = 46/353 (13%), Positives = 83/353 (23%), Gaps = 64/353 (18%)
Query: 317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEG 376
LK W+AP G +E+ R + T + L G
Sbjct: 2 LKCVTNNLQVWQCSWKAPSGTGRGTDYEVCIEQ------RSRSCYQLEKTSIKIPALSHG 55
Query: 377 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT-DWGKDHVDLEWTPPKK 435
DY + +++ G S + + ++ PD P ++ D+ + L+W
Sbjct: 56 -DYEITINSLHDFGSSTS---KFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGS 111
Query: 436 DGGSPIS-QYIIEKKPK----------YGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484
+ + I+ K + + + S L E + +
Sbjct: 112 VFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPL-ECAIHFVEIR 170
Query: 485 AVNKG----GPGEPSKASAPVTCKPRFVAP--------------------VIDQYALQDM 520
G E S S + V + L +
Sbjct: 171 CYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSAL 230
Query: 521 TAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDN---------------VPGKPSKPEA 565
P I L +N + + S + + P P +
Sbjct: 231 IGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNC 290
Query: 566 TDVDKDHIKIKWQQPISNG--GSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
D I W G Y + +K P
Sbjct: 291 ETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQ 343
Score = 34.4 bits (78), Expect = 0.095
Identities = 20/155 (12%), Positives = 41/155 (26%), Gaps = 23/155 (14%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD---------PTA 119
G + ++ ++ + L Y F + A N G + + P
Sbjct: 325 SGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHT 384
Query: 120 PHI--ARAKKGKCYHL-----VGTLLKDSIYE-QLKRSGLFDQFHLCPIWEKCAQTEGDT 171
P + L + + E ++K+S + I E +
Sbjct: 385 PTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQ----GVENSS 440
Query: 172 PKGKVLDLIEGNQYEFRVLAV--NKGGPGEPSDPT 204
+ L Y FR+ + S+
Sbjct: 441 YLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKK 475
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 96.1 bits (239), Expect = 5e-21
Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 302 AKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG 361
A V + P PP P NI + L W+ P DGG+ + +Y +EK + G W P
Sbjct: 2 AMVADVPEPEPPRFP-IIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCA 60
Query: 362 DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 417
TYT E L G Y FR+ A NK G+S P +P+ + R
Sbjct: 61 KSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVD 116
Score = 90.3 bits (224), Expect = 4e-19
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
P+ P P + + + V L W PP DGGS ++ Y IEK+ G + + T
Sbjct: 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGS-WSPCAKSRYTY 66
Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
T++ L+ G++YEFR+IA NK G +P + +APV
Sbjct: 67 TTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPG 104
Score = 66.8 bits (163), Expect = 1e-11
Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 2/121 (1%)
Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
+ + + R++ +I + +V G + F VI
Sbjct: 454 RISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVK--PYGTEVGEGQSANFYCRVIASSP 511
Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305
P W +D + ++ + L + K D G YT+ KNS+GT + +
Sbjct: 512 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Query: 306 V 306
V
Sbjct: 572 V 572
Score = 58.3 bits (141), Expect = 4e-09
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 553 IDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKIT 607
P P P ++ + + + W+ P +GGS + Y +E+RE G W
Sbjct: 6 DVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCA 60
Score = 46.4 bits (110), Expect = 2e-05
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 49 WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
W+ A G ++ E W CA++ + L G QYEFR++A NK
Sbjct: 30 WKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS--RYTYTTIEGLRAGKQYEFRIIAENK 87
Query: 109 GGPGEPSDPTAPHIARAKKGK 129
G +P +PTAP + + K
Sbjct: 88 HGQSKPCEPTAPVLIPGDERK 108
Score = 44.8 bits (106), Expect = 7e-05
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 213
W CA++ + L G QYEFR++A NK G +P +PTAP + +
Sbjct: 56 WSPCAKS--RYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDE 106
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 86.9 bits (215), Expect = 1e-20
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE-----KKPKYGPWEKACIVPAN 464
+P P V ++L W +K+ + + + PK + I
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGV--IYTGY 73
Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
T V L+ Y+FR+ + G E S + T +
Sbjct: 74 ATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRE 114
Score = 80.8 bits (199), Expect = 1e-18
Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 8/118 (6%)
Query: 293 NSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI----LHYVVE 348
+S + KV L P PP +T S L W + + L + +E
Sbjct: 2 SSGSSGMEPHKVVPLSKPHPPVV----GKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIE 57
Query: 349 KMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
+ D + + + T E L Y FR+K + GE S T ++
Sbjct: 58 EEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115
Score = 48.4 bits (115), Expect = 4e-07
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 4/58 (6%)
Query: 555 NVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKG----YEVERRERTSGRWIKITP 608
KP P V I++ W + + +E + + I
Sbjct: 14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT 71
Score = 41.5 bits (97), Expect = 8e-05
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 49 WEKCAQTEGDTPKGKVLDLI----EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 104
W+ + + P+ + L + + G + V L Y+FR+
Sbjct: 36 WDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY--TGYATRHVVEGLEPRTLYKFRLK 93
Query: 105 AVNKGGPGEPSDPT 118
+ G E S
Sbjct: 94 VTSPSGEYEYSPVV 107
Score = 39.2 bits (91), Expect = 6e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
V L Y+FR+ + G E S
Sbjct: 79 VEGLEPRTLYKFRLKVTSPSGEYEYSPVV 107
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 90.0 bits (222), Expect = 2e-20
Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 17/247 (6%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN-KGGPGEPSDPTAPHIARAKKVSPYIN 219
++ A+ G + ++ G E V D T + A + I+
Sbjct: 6 LKEAAEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAIS 65
Query: 220 RDQ--LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF 277
D ++ K+ G ++ GEP+P KE L +K + + + L V
Sbjct: 66 DDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVL-------AKVVLRAEAKTEGSNLSVT 118
Query: 278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDD 337
+S GD + + T + + +P K S I K + + W P
Sbjct: 119 NSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVR-DFKASEINKKNVTVTWTEPETT 177
Query: 338 GGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVC 397
G + Y++ K G+ V T + L YNF++ A GE
Sbjct: 178 EG--LEGYILYK----DGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKES 231
Query: 398 QSPITAK 404
+ TA+
Sbjct: 232 LTLRTAR 238
Score = 71.9 bits (175), Expect = 3e-14
Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 18/201 (8%)
Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 368
+ I+ + + +DG +L + ++
Sbjct: 51 LNYDENAFEYVEAISDDGVFVNAKKI-EDGKVRVLVS-----SLTGEPLPAKEVLAKVVL 104
Query: 369 RAENLIEGHDYNFRVKAVNK-----IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK 423
RAE EG + + +V + + I P + ++ K
Sbjct: 105 RAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINK 164
Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRV 483
+V + WT P+ G + YI+ K +K + + T+ + L Y F++
Sbjct: 165 KNVTVTWTEPETTEG--LEGYILYKD-----GKKVAEIGKDETSYTFKKLNRHTIYNFKI 217
Query: 484 IAVNKGGPGEPSKASAPVTCK 504
A G ++ T +
Sbjct: 218 AAKYSNGEVSSKESLTLRTAR 238
Score = 35.3 bits (80), Expect = 0.042
Identities = 9/63 (14%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 546 SMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIK 605
++++ + + V +A++++K ++ + W +P + G ++GY + + G+ +
Sbjct: 140 NIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYK----DGKKVA 193
Query: 606 ITP 608
Sbjct: 194 EIG 196
Score = 34.9 bits (79), Expect = 0.051
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
+K A+ D L Y F++ A G +
Sbjct: 189 GKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKES 231
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 90.4 bits (223), Expect = 5e-19
Identities = 46/360 (12%), Positives = 89/360 (24%), Gaps = 38/360 (10%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS--DPTAPHIARAKKVSPYINRDQL 223
+ P + L QY V + + + + +P
Sbjct: 543 PKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP----SVP 598
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
D + S+ + I + +P P+ N ++ +D + K
Sbjct: 599 LDPISVSNSSSQ--IILKWKP-PSDP---NGNITHYLVFWERQAEDSELFELDYCLKGLK 652
Query: 284 SGIYTLAV------KNSWG-TDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRD 336
T + ++ + P + +SS +
Sbjct: 653 LPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQI--LKELEESSFRKTFEDYLH 710
Query: 337 D-------GGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKI 389
+ V V+ L Y ++A N+
Sbjct: 711 NVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQD 770
Query: 390 GESLPLVCQSPITAKDPFGRP--DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE 447
+ ++A+ D G T + + V L W PK+ G I Y +
Sbjct: 771 TPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVS 829
Query: 448 KKPKYGPWEKACI---VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
+ C A + L G Y R+ A + G G ++ P
Sbjct: 830 YRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTE---PTYFY 885
Score = 75.0 bits (183), Expect = 3e-14
Identities = 37/316 (11%), Positives = 72/316 (22%), Gaps = 60/316 (18%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
T PS P + + S L+W+ P D G +I HY+V + D
Sbjct: 590 TDATNPSVPLD-PISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELD-- 645
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT-----VT 419
Y + ++ ++ + + S + +
Sbjct: 646 --YCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRK 703
Query: 420 DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEY 479
+ ++ + P + + N + + L+ Y
Sbjct: 704 TFEDYLHNVVFVPRPSRKRRSLGDV---GNAGNNEEHRPFEKVVNKESLVISGLRHFTGY 760
Query: 480 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLD 539
+ A N+ P E +A V+ + M
Sbjct: 761 RIELQACNQDTPEERCSVAAYVSA--------------RTMPEA---------------- 790
Query: 540 LNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERT 599
+ + + + WQ+P G I YEV R
Sbjct: 791 ---------------KADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYG 834
Query: 600 SGRWIKITPDPIRTKT 615
Sbjct: 835 DEELHLCDTRKHFALE 850
Score = 75.0 bits (183), Expect = 3e-14
Identities = 23/241 (9%), Positives = 50/241 (20%), Gaps = 33/241 (13%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG-------------- 355
+ L W D+L +++ +
Sbjct: 468 CENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSN 527
Query: 356 -----------RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQ--SPIT 402
R + L Y VK + + I
Sbjct: 528 SWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIY 587
Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVP 462
+ P P P + L+W PP G I+ Y++ + + E
Sbjct: 588 VQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFE--- 643
Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTA 522
+ + + + + + C L++ +
Sbjct: 644 --LDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSF 701
Query: 523 Q 523
+
Sbjct: 702 R 702
Score = 60.7 bits (146), Expect = 1e-09
Identities = 29/266 (10%), Positives = 53/266 (19%), Gaps = 74/266 (27%)
Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK 423
G N +++ V+ + T D + + +
Sbjct: 423 QGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSF 482
Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYG------------------------PWEKAC 459
D + L W P + +++ K P
Sbjct: 483 DKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSND 542
Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA--SAPVTCKPRFVAPVIDQYAL 517
N + LK +Y V + + S + +
Sbjct: 543 PKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQ------------- 589
Query: 518 QDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKW 577
T P P P + I +KW
Sbjct: 590 ---TDAT-------------------------------NPSVPLDPISVSNSSSQIILKW 615
Query: 578 QQPISNGGSAIKGYEVERRERTSGRW 603
+ P G+ I Y V +
Sbjct: 616 KPPSDPNGN-ITHYLVFWERQAEDSE 640
Score = 54.9 bits (131), Expect = 6e-08
Identities = 46/367 (12%), Positives = 97/367 (26%), Gaps = 87/367 (23%)
Query: 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG-----PGEPSD----------PTAPHIAR 124
+ P + L QY V + G SD P+ P
Sbjct: 543 PKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPI 602
Query: 125 AKKGKCYHLV----------GTLLKDSI-YEQLKRSGLFDQFHLCPIWEKCAQTEGDTPK 173
+ ++ G + + +E+ + C K
Sbjct: 603 SVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSR------ 656
Query: 174 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN 233
+ + + + + + + +L + R
Sbjct: 657 ----------TWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFR--KT 704
Query: 234 FE-FDINVIGEPIPTKE-------WLCND-------ITIISKDRFKIVNDDKSTKLKVFD 278
FE + NV+ P P+++ + +++K+ I T
Sbjct: 705 FEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTG----- 759
Query: 279 SKRGDSGIYTLAVK--NSWGTDKG-------TAKVTVLDIPSPPEGPLKPSNITKSSCNL 329
Y + ++ N ++ +A+ GP+ + +L
Sbjct: 760 --------YRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHL 811
Query: 330 EWRAPRDDGGTDILHYVV---EKMDMETGRWVPMGDVS-GTYTRAENLIEGHDYNFRVKA 385
W+ P++ G I+ Y V D E + R L G+ Y+ R++A
Sbjct: 812 MWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRA 869
Query: 386 VNKIGES 392
+ G
Sbjct: 870 TSLAGNG 876
Score = 44.5 bits (104), Expect = 9e-05
Identities = 30/139 (21%), Positives = 44/139 (31%), Gaps = 31/139 (22%)
Query: 90 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK--------GKCYHLVGTLLKDS 141
+ L Y + A N+ P E A AR G H + +
Sbjct: 751 ISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFE--NNV 808
Query: 142 I----------------YEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQY 185
+ YE R ++ HLC + A G +G L GN Y
Sbjct: 809 VHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRG----LSPGN-Y 863
Query: 186 EFRVLAVNKGGPGEPSDPT 204
R+ A + G G ++PT
Sbjct: 864 SVRIRATSLAGNGSWTEPT 882
Score = 33.7 bits (76), Expect = 0.23
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 89 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
++ L GN Y R+ A + G G ++PT
Sbjct: 854 RLRGLSPGN-YSVRIRATSLAGNGSWTEPT 882
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 81.5 bits (201), Expect = 1e-18
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 18/115 (15%)
Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM-------- 352
+ L P+PP + + + + W + I Y ++
Sbjct: 7 GEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFIS 63
Query: 353 ---ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
W+ + ++ + L G Y F VKA+N+ G P K
Sbjct: 64 LYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNS----EPTRLK 114
Score = 80.7 bits (199), Expect = 2e-18
Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 14/123 (11%)
Query: 399 SPITAKDPFGRPDRP-GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK 457
S D P+ P + + D + + W IS Y ++ G
Sbjct: 5 SSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANF 61
Query: 458 AC--------IVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 507
++ NI V L+ G Y F V A+N+ G +P
Sbjct: 62 ISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFK 121
Query: 508 VAP 510
P
Sbjct: 122 SGP 124
Score = 44.9 bits (106), Expect = 6e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
V L G +Y F V A+N+ G ++ K P
Sbjct: 84 VHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGP 124
Score = 43.0 bits (101), Expect = 3e-05
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 90 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 127
V L G +Y F V A+N+ G ++ K
Sbjct: 84 VHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFK 121
Score = 41.4 bits (97), Expect = 1e-04
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 546 SMVKLSYIDNVPGKPS-KPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
S L Y+ P PS + E D I + W +I YE++ T
Sbjct: 6 SGEGLDYLT-APNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQAN 60
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 81.2 bits (201), Expect = 1e-18
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 390 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 449
G S + + P + + W P G I Y +
Sbjct: 1 GSSGSS---GRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYM 56
Query: 450 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
K E+ V + + ++ LK+ EY FRV+A NK GPG + A T
Sbjct: 57 EKGTDKEQD--VDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 107
Score = 73.5 bits (181), Expect = 5e-16
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
+ +P P L+ + +S + W P G +I +Y + M+ T + + DVS
Sbjct: 13 PEVQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDV-DVS 69
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
L + +Y+FRV A NK G +
Sbjct: 70 SHSYTINGLKKYTEYSFRVVAYNKHGPGVS 99
Score = 51.6 bits (124), Expect = 2e-08
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPD 609
+PG A I + W+ P+S G I+ Y++ E+ + + +
Sbjct: 17 LPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVDVS 69
Score = 42.7 bits (101), Expect = 3e-05
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
+ + + L + +Y FRV+A NK GPG +
Sbjct: 65 DVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103
Score = 42.7 bits (101), Expect = 3e-05
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+ + + L + +Y FRV+A NK GPG +
Sbjct: 65 DVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 84.1 bits (207), Expect = 1e-18
Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 13/208 (6%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDG--GTDILHYVVEKMDMETGRW-----VPMGD 362
P+ P ++T +S +W + + IL + D + V
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64
Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIG--ESLPLVCQSPITAK-DPFGRPDRPGQPTVT 419
+ +NL+ V+A N +G ES L K +P P V
Sbjct: 65 QNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVV 124
Query: 420 DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGE 477
+ L W P K + + +P+ + + + L +
Sbjct: 125 SHQPGCLWLSWKPWKPSEYMEQ-ECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAP 183
Query: 478 EYEFRVIAVNKGGPGEPSKASAPVTCKP 505
Y ++ + PG S S + +P
Sbjct: 184 VYTLQMRCIRSSLPGFWSPWSPGLQLRP 211
Score = 37.1 bits (85), Expect = 0.009
Identities = 20/215 (9%), Positives = 46/215 (21%), Gaps = 57/215 (26%)
Query: 413 PGQPT----VTDWGKDHVDLEWTPPKKDGGSPIS---QYIIEKKPKYGPWEKACIVPANI 465
P P+ + + + +W P + P S + + + A
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 466 TATS----VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMT 521
+ +L + V A N G E K + P++
Sbjct: 64 RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPML--------- 114
Query: 522 AQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPI 581
P+ + + W+
Sbjct: 115 -----------------------------------QALDIGPDVVSHQPGCLWLSWKPWK 139
Query: 582 SNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
+ + E+ + + G + +K
Sbjct: 140 PSEYMEQE-CELRYQPQLKGANWTLVFHLPSSKDQ 173
Score = 35.6 bits (81), Expect = 0.027
Identities = 18/137 (13%), Positives = 34/137 (24%), Gaps = 18/137 (13%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGE-------PSDPTAPHIARAKKGKCYHLVGTLLKDSIYE 144
+L+ V A N G E P D + V + ++
Sbjct: 74 NLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWL 133
Query: 145 QLKRSGLFDQFHL-CPI----------WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 193
K + C + W + ++ L + Y ++ +
Sbjct: 134 SWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIR 193
Query: 194 KGGPGEPSDPTAPHIAR 210
PG S + R
Sbjct: 194 SSLPGFWSPWSPGLQLR 210
Score = 34.8 bits (79), Expect = 0.052
Identities = 7/56 (12%), Positives = 16/56 (28%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
+ W + ++ L + Y ++ + PG S + R
Sbjct: 155 QLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 210
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 79.8 bits (197), Expect = 2e-18
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS 469
D P VT+ + + WTPP + I+ Y I P GP K VP + T+ +
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 507
+ L G EY V A+ P + T
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPPLVGTQ-TTGGHHH 95
Score = 69.0 bits (169), Expect = 1e-14
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
P L+ +N+T +S + W P I Y + V + T
Sbjct: 3 DAPTD-LQVTNVTDTSITVSWTPPSAT----ITGYRITYTPSNGPGEPKELTVPPSSTSV 57
Query: 371 --ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 407
L G +Y V A+ ES PLV + T
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQESPPLV-GTQTTGGHHH 95
Score = 38.6 bits (90), Expect = 6e-04
Identities = 8/45 (17%), Positives = 12/45 (26%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
K + + L G +Y V A+ P T
Sbjct: 44 EPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQ 88
Score = 38.6 bits (90), Expect = 6e-04
Identities = 8/45 (17%), Positives = 12/45 (26%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
K + + L G +Y V A+ P T
Sbjct: 44 EPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQ 88
Score = 31.6 bits (72), Expect = 0.13
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 560 PSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIK-ITPDPIRT 613
P+ + T+V I + W P + I GY + K +T P T
Sbjct: 5 PTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSST 55
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 80.2 bits (197), Expect = 4e-18
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 33/136 (24%)
Query: 206 PHIARAKKVSPYINRDQLS----DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-- 259
H +++ P I+ D I V AG+ D+ + G+P PT W
Sbjct: 4 HHHHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAP 63
Query: 260 ---------------------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 292
+ R ++ + V +++ D G+YT+ VK
Sbjct: 64 ARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVK 123
Query: 293 NSWGTDKGTAKVTVLD 308
N G D+ V V+D
Sbjct: 124 NPVGEDQVNLTVKVID 139
Score = 34.3 bits (78), Expect = 0.040
Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 1 APHID----RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTE 56
P I R I + AG L+ D I G+P P V W+ N P E
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 57 GDTP 60
Sbjct: 73 DTGD 76
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 79.0 bits (195), Expect = 5e-18
Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 5/112 (4%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 458
P D PD+P V + + + WTPP + YII E
Sbjct: 7 GPENDLDESQVPDQPSSLHVRP-QTNCIIMSWTPPLNPNI-VVRGYIIGYGVGSPYAETV 64
Query: 459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
V + S+ L+ Y + A N G G P T + P
Sbjct: 65 -RVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL--YESATTRSITSGP 113
Score = 57.4 bits (139), Expect = 2e-10
Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 5/107 (4%)
Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
+ +P P + + W P + + Y++ D
Sbjct: 12 LDESQVPDQPSSLH--VRPQTNCIIMSWTPPLNPNIV-VRGYIIGYGVGSPYAETVRVDS 68
Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
Y E L Y +KA N GE +PL T + P
Sbjct: 69 KQRYYSIERLESSSHYVISLKAFNNAGEGVPLY--ESATTRSITSGP 113
Score = 36.6 bits (85), Expect = 0.003
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVE-RRERTSGRWIKITPD 609
VP +PS + I + W P N ++GY + +++
Sbjct: 17 VPDQPSSLHVRPQT-NCIIMSWTPP-LNPNIVVRGYIIGYGVGSPYAETVRVDSK 69
Score = 33.2 bits (76), Expect = 0.065
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 71 NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115
P E + + + L + Y + A N G G P
Sbjct: 57 GSPYAET-VRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL 100
Score = 32.0 bits (73), Expect = 0.16
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 159 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 201
P E + + + L + Y + A N G G P
Sbjct: 59 PYAET-VRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL 100
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 78.1 bits (193), Expect = 8e-18
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 196 GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI 255
GPG P P I SDI + G GEP P W C
Sbjct: 1 GPGIP-----PKIEAL-----------PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGR 44
Query: 256 TIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
I S++ RF I N D T L + D ++ D G+YTL++ N +G+D T + + I
Sbjct: 45 KIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P I DI + G L GEP P V W GG +
Sbjct: 5 PPKI-EALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKI 46
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 80.8 bits (199), Expect = 1e-17
Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 17/209 (8%)
Query: 312 PPEGPLKPSNITKSSCNL--EWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT--- 366
PPE P S I + EW R+ ++ ++ T ++ T
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEW-ATHKFADCKAKRDTPTS 63
Query: 367 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT--DWGKD 424
T + + + V+A N +G+ K P+ P +V +
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVK---PNPPHNLSVINSEELSS 120
Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS--VPDLKEGEEYEF 481
+ L WT P I +Y I+ + K W + T +S V DLK EY F
Sbjct: 121 ILKLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF 179
Query: 482 RVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
R+ + + G G S S + P
Sbjct: 180 RIRCMKEDGKGYWSDWSEEASGITYEDRP 208
Score = 41.5 bits (97), Expect = 3e-04
Identities = 26/218 (11%), Positives = 55/218 (25%), Gaps = 55/218 (25%)
Query: 400 PITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC 459
P ++ P P++P + + EW + + + + ++ + +
Sbjct: 1 PGSSGLP---PEKPKNLSCIVNEGKKMRCEWDGGR-ETHLETN-FTLKSEWATHKFADCK 55
Query: 460 IVPANITATSVP-DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQ 518
T+ +V E V A N G + K + P
Sbjct: 56 AKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN------ 109
Query: 519 DMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQ 578
++ +K+ W
Sbjct: 110 ------------------------------------------LSVINSEELSSILKLTWT 127
Query: 579 QPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
P S I Y ++ R + + W +I P+ + S
Sbjct: 128 NP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRS 164
Score = 38.4 bits (89), Expect = 0.003
Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 15/157 (9%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-- 126
H + A+ + T + E V A N G + + K
Sbjct: 46 WATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN 105
Query: 127 -----KGKCYHLVGTLLKDSIYEQLKRSGLFDQFHL------CPIWE--KCAQTEGDTPK 173
+ ++LK + +S + ++++ W T
Sbjct: 106 PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSS 165
Query: 174 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
V DL +Y FR+ + + G G SD +
Sbjct: 166 FTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 202
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 78.0 bits (192), Expect = 1e-17
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 14/127 (11%)
Query: 377 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKD 436
H ++ + D P + V + + W P
Sbjct: 3 HHHHHHSSDYKDDDDKGE-------NLYFQGSVSDVPTKLEVVAATPTSLLISWDAP--- 52
Query: 437 GGSPISQYIIEKKPKYGPWEKACI-VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
+ Y I G VP + + ++ LK G +Y V AV
Sbjct: 53 -AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
Query: 496 KASAPVT 502
S P++
Sbjct: 112 --SKPIS 116
Score = 62.6 bits (152), Expect = 3e-12
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 9/110 (8%)
Query: 287 YTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYV 346
++ K+ DKG + P L+ T +S + W AP + +Y
Sbjct: 8 HSSDYKDD--DDKGENLYFQGSVSDVPTK-LEVVAATPTSLLISWDAPAVT----VRYYR 60
Query: 347 VEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLP 394
+ + V V G+ + A L G DY V AV + L
Sbjct: 61 ITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLA 110
Score = 30.2 bits (68), Expect = 0.69
Identities = 7/33 (21%), Positives = 7/33 (21%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
L G Y V AV R
Sbjct: 88 GLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
Score = 30.2 bits (68), Expect = 0.69
Identities = 7/33 (21%), Positives = 7/33 (21%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
L G Y V AV R
Sbjct: 88 GLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
Score = 30.2 bits (68), Expect = 0.74
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 555 NVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTK 614
+V P+K E + I W P ++ Y + E ++ P +K
Sbjct: 27 SVSDVPTKLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVP-GSK 81
Query: 615 TS 616
++
Sbjct: 82 ST 83
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 79.9 bits (196), Expect = 3e-17
Identities = 41/213 (19%), Positives = 61/213 (28%), Gaps = 21/213 (9%)
Query: 309 IPSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
+P G KP+NIT S N L+W P G + Y V+ +W+ +
Sbjct: 2 VPCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKV-TYTVQYFIYGQKKWLNKSECR 60
Query: 365 GTYTR-----AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT 419
AE H Y RV+A+ S + P P T
Sbjct: 61 NINRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGP--PEVALTT 118
Query: 420 DWGKDHVDLE--WTPPKKDGGSPISQYIIEKKPKY------GPWEKACIVPANITATSVP 471
D V L + P+S I KY + +
Sbjct: 119 DEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLT 178
Query: 472 DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
L+ Y V + G P ++ S +
Sbjct: 179 WLEPNTLYCVHVESFVPGPPR-RAQPSEKQCAR 210
Score = 42.5 bits (99), Expect = 1e-04
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT----SVPDLKEGEEY 479
L+WTPP+ Y ++ NI T S +Y
Sbjct: 22 MKNVLQWTPPE-GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQY 80
Query: 480 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
RV A+ + +++ + P
Sbjct: 81 YARVRAIWGTKCSKWAESGRFYPFLETQIGP 111
Score = 31.4 bits (70), Expect = 0.71
Identities = 19/151 (12%), Positives = 32/151 (21%), Gaps = 22/151 (14%)
Query: 76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG-----------PGEPSDPTAPHIAR 124
+C +QY RV A+ P + P +A
Sbjct: 57 SECRNINRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVAL 116
Query: 125 AKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGK--------- 175
K +V T + Q + +
Sbjct: 117 TTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLV 176
Query: 176 VLDLIEGNQYEFRVLAVNKG--GPGEPSDPT 204
+ L Y V + G +PS+
Sbjct: 177 LTWLEPNTLYCVHVESFVPGPPRRAQPSEKQ 207
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 79.4 bits (195), Expect = 4e-17
Identities = 34/214 (15%), Positives = 53/214 (24%), Gaps = 28/214 (13%)
Query: 310 PSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSG 365
LKP + S N L+W+ R G + Y V+ +W D G
Sbjct: 2 TQSTHESLKPQRVQFQSRNFHNILQWQPGRALTG-NSSVYFVQYKIYGQRQWKNKEDCWG 60
Query: 366 TYTR-----AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD 420
T +E Y RV+A + S + + P P
Sbjct: 61 TQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP--PVMNITQV 118
Query: 421 WGKDHVDLEW--TPPKKDGGSPIS-------QYIIEKKPKYGPWEKACIVPANITATSVP 471
G V L P + +S Y + ++ + A +
Sbjct: 119 NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINN-SLEKEQKVYEGAHRAVEIE 177
Query: 472 DLKEGEEYEFRVIAVNK--GGPGEPSKASAPVTC 503
L Y + S C
Sbjct: 178 ALTPHSSYCVVAEIYQPMLDRRSQRS----EERC 207
Score = 44.4 bits (104), Expect = 4e-05
Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 5/91 (5%)
Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT----SVPDLKEGEEY 479
H L+W P + S Y ++ K K + E Y
Sbjct: 21 FHNILQWQPGR-ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPY 79
Query: 480 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
RV A + G E S + P
Sbjct: 80 YGRVRAASAGSYSEWSMTPRFTPWWETKIDP 110
Score = 32.8 bits (74), Expect = 0.19
Identities = 22/160 (13%), Positives = 41/160 (25%), Gaps = 26/160 (16%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG-----------PGEPSDP 117
+ E C T+ + Y RV A + G P +
Sbjct: 49 QRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKI 108
Query: 118 TAPHIARAKKGKCYHLVGTL---LKDSIYEQLKRSGLFDQFHL---CPIWEKCAQTEGDT 171
P + + L+ L Y++ K + D + L I + E
Sbjct: 109 DPPVMNITQVNG--SLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKV 166
Query: 172 PKG-----KVLDLIEGNQYEFRVLAVNK--GGPGEPSDPT 204
+G ++ L + Y + S+
Sbjct: 167 YEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEER 206
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 82.4 bits (202), Expect = 7e-17
Identities = 50/360 (13%), Positives = 99/360 (27%), Gaps = 25/360 (6%)
Query: 162 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD 221
C L L + + R+ A + + +A+ P ++ +
Sbjct: 55 SGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLE 114
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
V S D + + + + + + + ++ ++ K++
Sbjct: 115 AEDKAIVIHISPGTKDSVMWALDGLSFTY--SLVIWKNSSGVEERIENIYSRHKIYKLSP 172
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCN----LEWRAPRDD 337
+ + G + P NI S N L+W +
Sbjct: 173 ETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYAN 232
Query: 338 GG---TDILHYVVEKMDMETGRWVPMGDVSGTYTR----AENLIEGHDYNFRVKAVNKIG 390
+ ++ +W + D T +N+ + Y RV+A +
Sbjct: 233 MTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNN 292
Query: 391 ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQ-----YI 445
S T P + D + PK+ G +P+ Q Y
Sbjct: 293 TSFWSEEIKFDTEIQA---FLLPPVFNIRS-LSDSFHIYIGAPKQSGNTPVIQDYPLIYE 348
Query: 446 IEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIA-VNKGGPGEPSKASAPVTCK 504
I E+ + T +VP+LK Y + A + S S V K
Sbjct: 349 IIFWENTSNAER--KIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEK 406
Score = 63.9 bits (154), Expect = 6e-11
Identities = 28/213 (13%), Positives = 58/213 (27%), Gaps = 16/213 (7%)
Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGT-----DILHYVVEKMDMETGRWVPMGDV 363
PPE L+ + + + D Y + +G + ++
Sbjct: 105 QIGPPEVHLEAED---KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENI 161
Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK 423
+ L Y +VKA + + P V+ +
Sbjct: 162 YSRHK-IYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQ 220
Query: 424 DHVDLEWTPPKKDGGSPI---SQYIIEKKPKYGPWEKACIVPANITATSV---PDLKEGE 477
++V L+W + + ++ + K N+ T ++ +
Sbjct: 221 NYV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKG 279
Query: 478 EYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
Y RV A + S+ T F+ P
Sbjct: 280 IYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLP 312
Score = 62.7 bits (151), Expect = 1e-10
Identities = 21/199 (10%), Positives = 43/199 (21%), Gaps = 21/199 (10%)
Query: 318 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT-----YT 368
P + + L W + G + + + W+ +
Sbjct: 10 SPQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNF 67
Query: 369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD-HVD 427
+ L + R++A + S S + P P V +D +
Sbjct: 68 SSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGP-----PEVHLEAEDKAIV 121
Query: 428 LEWTPPKKDGGSP-ISQYIIEKKPKYGPWEKACIVPANITATSV--PDLKEGEEYEFRVI 484
+ +P KD + + L Y +V
Sbjct: 122 IHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVK 181
Query: 485 AVNKGGPGEPSKASAPVTC 503
A +
Sbjct: 182 AALLTSWKIGVYSPVHCIK 200
Score = 45.0 bits (105), Expect = 6e-05
Identities = 50/362 (13%), Positives = 99/362 (27%), Gaps = 38/362 (10%)
Query: 76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG----------PGEPSDPTAPHIARA 125
C L L + + R+ A + P + P +
Sbjct: 55 SGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLE 114
Query: 126 KKGKCYHLVGT-LLKDSIYEQLKRSGLFDQFHLCPI-WEKCAQTEGDTPKGKVLDLIEGN 183
+ K + + KDS+ L + + E + K+ L
Sbjct: 115 AEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPET 174
Query: 184 QYEFRVLAVNKGGPGE-PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG 242
Y +V A P + P ++S +++ +
Sbjct: 175 TYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMT 234
Query: 243 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG--DSGIYTLAVKNSWG---- 296
+ ++K + D ++ K + GIY L V+ S G
Sbjct: 235 FQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTS 294
Query: 297 --TDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI-----LHYVVEK 349
+++ + PP ++ S ++ AP+ G T + L Y +
Sbjct: 295 FWSEEIKFDTEIQAFLLPPVFNIRS---LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIF 351
Query: 350 MDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKA------VNKIGESLPLVCQSPITA 403
+ + + + T NL Y + +A +NK VC+ T
Sbjct: 352 WENTSNAERKIIEKKTDVT-VPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEK--TK 408
Query: 404 KD 405
Sbjct: 409 PG 410
Score = 36.9 bits (84), Expect = 0.017
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 428 LEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT----SVPDLKEGEEYEFRV 483
L W + G+ + + + NIT+T S L EE + R+
Sbjct: 25 LRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRI 82
Query: 484 IAVNKGGPGEPSKASAPVTCKPRFVAPVI 512
A + S K + P +
Sbjct: 83 RAEKENTSSWYEVDSFTPFRKAQIGPPEV 111
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 74.3 bits (183), Expect = 2e-16
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITATS 469
P VT+ + W PP PI ++ K P ++ + + ++IT+ +
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
+ +L+ YE R++A N P +
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 67.0 bits (164), Expect = 6e-14
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSG 365
+L PP +K +NIT ++ + W+ P I +V D++
Sbjct: 1 MLQ---PPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTS 52
Query: 366 TYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 407
+ T NL Y R+ A N S P+ + T
Sbjct: 53 SITSLTLTNLEPNTTYEIRIVARNGQQYSPPVS-TTFTTGSLEH 95
Score = 37.0 bits (86), Expect = 0.002
Identities = 11/50 (22%), Positives = 15/50 (30%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
N P E + +L YE R++A N P T
Sbjct: 38 RKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 37.0 bits (86), Expect = 0.002
Identities = 10/46 (21%), Positives = 14/46 (30%)
Query: 159 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
P E + +L YE R++A N P T
Sbjct: 42 PSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 34.7 bits (80), Expect = 0.015
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 560 PSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
P + T++ + WQ PI I+G V + + T D + TS
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPILP----IEGILVTFGRKNDPSD-ETTVDLTSSITS 56
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 77.5 bits (190), Expect = 2e-16
Identities = 30/211 (14%), Positives = 54/211 (25%), Gaps = 24/211 (11%)
Query: 318 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT-----YT 368
P ++ + L W + Y V + W + S T
Sbjct: 7 SPPSVWFEAEFFHHILHWTPIPQQSES--TCYEVALLRYGIESWNSISQCSQTLSYDLTA 64
Query: 369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDL 428
+L + Y RV+AV+ S V + + + G +
Sbjct: 65 VTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTV--GSVNLEIHNGFILGKI 122
Query: 429 EWTPPKKDGGSP--------ISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYE 480
+ PK +Y I + G + S+ E E+
Sbjct: 123 QLPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFT-HKKVKHEQFSLLTSGEVGEFC 181
Query: 481 FRVIAV--NKGGPGEPSKASAPVTCKPRFVA 509
+V ++ G SK + F
Sbjct: 182 VQVKPSVASRSNKGMWSKEECISLTRQYFTV 212
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 74.4 bits (183), Expect = 3e-16
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 8/127 (6%)
Query: 387 NKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQ 443
+ + L ++ + D P+ P V + + WTPP+ +
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRP-LVTSIVVSWTPPENQNI-VVRG 59
Query: 444 YIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
Y I P + V ++ +L Y + A N G G P
Sbjct: 60 YAIGYGIG-SPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPL--YESAVT 116
Query: 504 KPRFVAP 510
+P P
Sbjct: 117 RPHTSGP 123
Score = 55.5 bits (134), Expect = 1e-09
Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 305 TVLDIPSPPEGPLKPSNI----TKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM 360
T P PS++ +S + W P + + Y +
Sbjct: 17 TFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIK 75
Query: 361 GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
D Y ENL Y +KA N +GE +PL + P
Sbjct: 76 VDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLY--ESAVTRPHTSGP 123
Score = 34.7 bits (80), Expect = 0.021
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 554 DNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
VP PS + I + W P N ++GY + + R
Sbjct: 25 TRVPEVPSSLHVRPLV-TSIVVSWTPP-ENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRY 82
Query: 614 KT 615
T
Sbjct: 83 YT 84
Score = 32.8 bits (75), Expect = 0.11
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
+L + Y + A N G G P +A
Sbjct: 87 NLDPSSHYVITLKAFNNVGEGIPLYESA 114
Score = 32.8 bits (75), Expect = 0.11
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
+L + Y + A N G G P +A
Sbjct: 87 NLDPSSHYVITLKAFNNVGEGIPLYESA 114
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 73.6 bits (181), Expect = 4e-16
Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 4/90 (4%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
P +D D + W P+ + G P N T+
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATSAM 63
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
+ L Y RV + GG
Sbjct: 64 LGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93
Score = 61.3 bits (149), Expect = 8e-12
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
P L S+++ + + W + V + E G + G T
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAPRP----VRLVRVTYVSSE-GGHSGQTEAPGNATS 61
Query: 370 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
A L Y RV + G S L + T K P
Sbjct: 62 AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRV-TTKKAP 99
Score = 33.9 bits (78), Expect = 0.031
Identities = 6/28 (21%), Positives = 7/28 (25%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
L Y RV + GG
Sbjct: 66 PLSSSTTYTVRVTCLYPGGGSSTLTGRV 93
Score = 33.9 bits (78), Expect = 0.031
Identities = 6/28 (21%), Positives = 7/28 (25%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
L Y RV + GG
Sbjct: 66 PLSSSTTYTVRVTCLYPGGGSSTLTGRV 93
Score = 32.0 bits (73), Expect = 0.13
Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 4/59 (6%)
Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P +DV D ++ W+ ++ V G + T
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAPRP----VRLVRVTYVSSEGGHSGQTEAPGNATSA 62
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 72.7 bits (179), Expect = 7e-16
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
P + + W PP G P+ Y + E+ + + +
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQN--IEVDGLSYK 64
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+ LK+ EY R +A N+ GPG + VT
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVT 97
Score = 70.7 bits (174), Expect = 4e-15
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
P P E L+ + + +S + W P G + Y + ++ TG+ + +V G
Sbjct: 6 SGPGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNI-EVDGLS 62
Query: 368 TRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 406
+ E L + +Y+ R A N+ G + + T D
Sbjct: 63 YKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVV---TLSDS 101
Score = 51.1 bits (123), Expect = 3e-08
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPD 609
PG +A I I W+ P G ++GY + E ++G+ I D
Sbjct: 7 GPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEVD 59
Score = 43.0 bits (102), Expect = 2e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
E D K+ L + +Y R LA N+ GPG +D
Sbjct: 55 NIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDI 93
Score = 43.0 bits (102), Expect = 2e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
E D K+ L + +Y R LA N+ GPG +D
Sbjct: 55 NIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDI 93
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 75.7 bits (186), Expect = 9e-16
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Query: 190 LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 249
L+ A A+K + + ++ G NV G+P P
Sbjct: 91 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 150
Query: 250 WLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
WL N+ + D + + ++ + DSG Y L VKN +G++ V+V
Sbjct: 151 WLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 55.6 bits (134), Expect = 5e-09
Identities = 11/82 (13%), Positives = 22/82 (26%)
Query: 242 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 301
W N I DR K + L++ + D G Y + + + + T
Sbjct: 29 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 88
Query: 302 AKVTVLDIPSPPEGPLKPSNIT 323
++ +
Sbjct: 89 VDLSGQAYDEAYAEFQRLKQAA 110
Score = 36.4 bits (84), Expect = 0.016
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
+ + + G L N+ G+P P V W L
Sbjct: 116 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL 158
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 72.4 bits (178), Expect = 9e-16
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
++ I + + V G + F + GEP+PT WL + + R ++ +
Sbjct: 12 TLAARILT-KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
++ + D G Y++ V+NS G + +T+
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 37.3 bits (87), Expect = 0.002
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
A I + + G + +F + GEPVP V W G L
Sbjct: 14 AARI-LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVL 55
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 71.8 bits (176), Expect = 1e-15
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 406 PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPAN 464
P G +VT+ + W +S + +E + G + +P+
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
T+ ++PDL G +Y V +++ G +++ T
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 68.7 bits (168), Expect = 1e-14
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
+ IT SS + W + D + + VE E G D+ T
Sbjct: 4 GSHLVATS-ESVTEITASSFVVSWVSASDT----VSGFRVEYELSEEGDEPQYLDLPSTA 58
Query: 368 TRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 402
T +L+ G Y V +++ GE ++ S T
Sbjct: 59 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 34.4 bits (79), Expect = 0.014
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 90 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
+ DL+ G +Y V +++ G T+
Sbjct: 63 IPDLLPGRKYIVNVYQISEDGEQSLILSTSQ 93
Score = 34.4 bits (79), Expect = 0.014
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
+ DL+ G +Y V +++ G T+
Sbjct: 63 IPDLLPGRKYIVNVYQISEDGEQSLILSTSQ 93
Score = 29.0 bits (65), Expect = 1.4
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 5/61 (8%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
+ T++ + W + G+ VE G + P T T
Sbjct: 5 SHLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLP-STAT 59
Query: 616 S 616
S
Sbjct: 60 S 60
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 72.0 bits (177), Expect = 1e-15
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 196 GPGEPSDP---TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC 252
GP + S + P R ++V +G+ E V+GEP P W
Sbjct: 1 GPMKASSGDQGSPPCFLR-----------FPRPVRVVSGAEAELKCVVLGEPPPVVVWEK 49
Query: 253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
+ + +R D L + + D+G+Y +N+ G A VTVL+ P
Sbjct: 50 GGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 35.8 bits (83), Expect = 0.006
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P R +++ +G + ++GEP P V W GG L
Sbjct: 13 PPCF-LRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQL 54
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 73.3 bits (180), Expect = 2e-15
Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 2/131 (1%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
+N V PY + + D++V GS FD V G P P W
Sbjct: 17 PINANKVENEDAFLEEVAEEKPHVKPYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMW 75
Query: 251 LCNDITIISKDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
+D + F+I D++ L + + D YT NS G TA++ V +
Sbjct: 76 FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
Query: 310 PSPPEGPLKPS 320
EG +
Sbjct: 136 GKEGEGEGEGE 146
Score = 34.4 bits (79), Expect = 0.035
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P+ + + D+++ G+ +FD + G P P V W NP+
Sbjct: 41 KPYFTKT-ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV 82
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 71.7 bits (176), Expect = 2e-15
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITA 467
R D P Q V D + W PP P+ + + K P + +
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
S+ +LK EYE +I+ P+K +
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNPAKETF 89
Score = 57.8 bits (140), Expect = 1e-10
Identities = 11/99 (11%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
P ++ ++T ++ + W P + + + + D++ +
Sbjct: 3 LDAPSQ-IEVKDVTDTTALITWMPPSQP----VDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 370 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
NL +Y + + S P ++ T
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNP-AKETFTTGLAA 95
Score = 33.1 bits (76), Expect = 0.054
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 71 NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
+ P D + + +L +YE +++ P+ T
Sbjct: 41 DVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETF 89
Score = 32.4 bits (74), Expect = 0.091
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
D + + +L +YE +++ P+ T
Sbjct: 45 DRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETF 89
Score = 29.7 bits (67), Expect = 0.85
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 560 PSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIK 605
PS+ E DV I W P + G+E+ +
Sbjct: 6 PSQIEVKDVTDTTALITWMPPSQP----VDGFELTYGIKDVPGDRT 47
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 71.3 bits (175), Expect = 2e-15
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITAT 468
P + V + + W P S + Y I G + VP + +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAP--MSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
++ L G +Y V A + G +P++ R
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISINYR 99
Score = 62.1 bits (151), Expect = 4e-12
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 368
+ S P L+ T +S + W AP + +Y + + V V + +
Sbjct: 4 VSSVPTK-LEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVPYSSS 60
Query: 369 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
A L G DY V A + + SPI+
Sbjct: 61 TATISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISIN 97
Score = 39.0 bits (91), Expect = 4e-04
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
V P+K E + I W P+S+ + Y + E ++ P
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVP 56
Score = 30.9 bits (70), Expect = 0.28
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI 122
L G Y V A + G + I
Sbjct: 66 GLSPGVDYTITVYAWGEDSAGYMFMYSPISI 96
Score = 30.9 bits (70), Expect = 0.28
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI 208
L G Y V A + G + I
Sbjct: 66 GLSPGVDYTITVYAWGEDSAGYMFMYSPISI 96
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 74.3 bits (182), Expect = 2e-15
Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 25/194 (12%)
Query: 318 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVE-----KMDMETGRWVPMGDVSGTYT 368
P ++ S N L W G ++Y VE + + W+P S T
Sbjct: 9 APQQLSVLSTNMKHLLMWSPVIAPGE--TVYYSVEYQGEYESLYTSHIWIPSSWCSLTEG 66
Query: 369 RA----ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
+++ YN RV+A S + + P + PG D
Sbjct: 67 PECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTR--PGMEITKDGFHL 124
Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484
++LE P + + + G E +V + + ++ G Y +
Sbjct: 125 VIELEDLGP------QFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQ 178
Query: 485 AVNK--GGPGEPSK 496
K G S+
Sbjct: 179 TFVKAIGRYSAFSQ 192
Score = 45.4 bits (107), Expect = 2e-05
Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 7/112 (6%)
Query: 405 DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSP--ISQYIIEKKPKYGPWEKACIVP 462
D P Q +V H+ L W+P G + +Y E + Y
Sbjct: 2 DEVAILPAPQQLSVLSTNMKHL-LMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSW 60
Query: 463 -ANITATS---VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
+ D+ Y RV A S P + +
Sbjct: 61 CSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTR 112
Score = 30.0 bits (67), Expect = 1.5
Identities = 17/121 (14%), Positives = 29/121 (23%), Gaps = 8/121 (6%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGL 151
D+ Y RV A S P ++ + T + +L+ G
Sbjct: 74 DITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHLVIELEDLGP 133
Query: 152 FDQFHLC------PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK--GGPGEPSDP 203
+F + E + + G Y + K G S
Sbjct: 134 QFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQT 193
Query: 204 T 204
Sbjct: 194 E 194
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 70.6 bits (173), Expect = 4e-15
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITAT 468
P + V D + + W + Y I G + VP +
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTA 66
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
++ LK G +Y V A + PG ++P++
Sbjct: 67 TISGLKPGVDYTITVYAYDTFFPGYEP--NSPIS 98
Score = 58.6 bits (142), Expect = 5e-11
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
S P L+ + T +S + W A ++ +Y + + V V G Y+
Sbjct: 8 SSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYST 65
Query: 370 A--ENLIEGHDYNFRVKAVNKIGESLP 394
A L G DY V A +
Sbjct: 66 ATISGLKPGVDYTITVYAYDTFFPGYE 92
Score = 30.1 bits (68), Expect = 0.53
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
L G Y V A + PG +
Sbjct: 70 GLKPGVDYTITVYAYDTFFPGYEPNSPI 97
Score = 30.1 bits (68), Expect = 0.53
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
L G Y V A + PG +
Sbjct: 70 GLKPGVDYTITVYAYDTFFPGYEPNSPI 97
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 70.2 bits (172), Expect = 4e-15
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS 469
P V++ +D + L WT P + ++I+ + VP + +
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
+ LK G EY + V G P A
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNPLSAEF 88
Score = 59.8 bits (145), Expect = 2e-11
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 368
+P+P L S +T+ S L W AP ++++ + E V G+
Sbjct: 2 LPAPKN--LVVSEVTEDSLRLSWTAPDAA----FDSFMIQYQESEKVGEAINLTVPGSER 55
Query: 369 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 407
L G +Y + V S PL + T
Sbjct: 56 SYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAEF-TTGGHHH 95
Score = 33.2 bits (76), Expect = 0.039
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
L G +Y + V G P
Sbjct: 61 GLKPGTEYTVSIYGVKGGHRSNPLSAEF 88
Score = 33.2 bits (76), Expect = 0.039
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
L G +Y + V G P
Sbjct: 61 GLKPGTEYTVSIYGVKGGHRSNPLSAEF 88
Score = 28.2 bits (63), Expect = 2.7
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 560 PSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVE-RRERTSGRWIKITPDPIRT 613
P ++V +D +++ W P +A + ++ + G I +T
Sbjct: 5 PKNLVVSEVTEDSLRLSWTAP----DAAFDSFMIQYQESEKVGEAINLTVPGSER 55
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 70.0 bits (172), Expect = 4e-15
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
L D V + S +F + GEP PT W + I ++K+ D L++ +
Sbjct: 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTV 306
DSG+YT VKNS G+ + K+T+
Sbjct: 73 DSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 34.2 bits (79), Expect = 0.017
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P I L D +S+ + KF GEP P W G +
Sbjct: 6 KPVIVTG-LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI 47
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 70.6 bits (173), Expect = 5e-15
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITAT 468
P + D + + WTPP + Y + P G EK+ VP +
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
++PDL+ +Y V A+ G E A+
Sbjct: 64 TLPDLQAATKYRVLVSAIYAAGRSEAVSATG 94
Score = 59.8 bits (145), Expect = 2e-11
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
+ SPP L ++ T S + W P +LHY + V
Sbjct: 3 SGSSGRSPPSN-LALASETPDSLQVSWTPPLGR----VLHYWLTYAPASGLGPEKSVSVP 57
Query: 365 GTYTRA--ENLIEGHDYNFRVKAVNKIGESLPL 395
G + +L Y V A+ G S +
Sbjct: 58 GARSHVTLPDLQAATKYRVLVSAIYAAGRSEAV 90
Score = 32.8 bits (75), Expect = 0.059
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
DL +Y V A+ G E T
Sbjct: 67 DLQAATKYRVLVSAIYAAGRSEAVSATG 94
Score = 32.8 bits (75), Expect = 0.059
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
DL +Y V A+ G E T
Sbjct: 67 DLQAATKYRVLVSAIYAAGRSEAVSATG 94
Score = 29.7 bits (67), Expect = 0.89
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 4/54 (7%)
Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
PS D +++ W P+ + Y + + K P
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPLGR----VLHYWLTYAPASGLGPEKSVSVP 57
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 72.8 bits (179), Expect = 6e-15
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 269
+A+ P + +L + VR GS + V G P P ++ + I S F+I +
Sbjct: 98 KAETAPPNFVQ-RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG 156
Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
L + ++ DSG Y++ NS G TA++ V
Sbjct: 157 DLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 69.7 bits (171), Expect = 5e-14
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDS 279
L + V GS F+ ++ G P+P W + I + +I D KL +
Sbjct: 11 PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ +SG Y+L N G TA++ V +PP + ++T
Sbjct: 71 TKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT 114
Score = 35.1 bits (81), Expect = 0.034
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P+ + L + + G+ ++ + G P P V + G +
Sbjct: 103 PPNF-VQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144
Score = 34.7 bits (80), Expect = 0.050
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
AP + L + + G+T F+A+I G PVP V W G +
Sbjct: 5 APTF-TQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVI 46
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 72.8 bits (179), Expect = 6e-15
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 209 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND 268
AK P + + G I G+P P W I + ++++
Sbjct: 98 VPAKIHLPKTLE-GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156
Query: 269 -DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
++ + +R D+G Y + KN +G D+ T ++ V D
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
Score = 64.0 bits (156), Expect = 7e-12
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKI-VNDDKS 271
++P+ +L ++ VR SN V G P P +W II+ +++I
Sbjct: 3 MAPHFKE-ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS--PPEGPLKPSNIT 323
+L + D+ +Y + N G+ GTA + V P+ +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Score = 34.3 bits (79), Expect = 0.060
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
APH + L ++ + + + G P P V W G +
Sbjct: 4 APHF-KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI 45
Score = 34.3 bits (79), Expect = 0.072
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P +G + G + G+P P + W+ G + +
Sbjct: 104 LPKTLEG-MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLI 145
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 69.6 bits (171), Expect = 8e-15
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
L D V G + E + P WL + I ++ +V + L + +
Sbjct: 14 PLEDQWVAPGEDVELRCELSRAGTPVH-WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASL 72
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
D+G YT V+ K TA + V + S P
Sbjct: 73 KDAGEYTCEVEA----SKSTASLHVEEKASGPS 101
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 76.2 bits (186), Expect = 8e-15
Identities = 56/320 (17%), Positives = 92/320 (28%), Gaps = 36/320 (11%)
Query: 196 GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI 255
G E SD + + + D V AGSN + + + +
Sbjct: 185 GYKEWSDWSPLKNISWIRNTET--NVFPQDKVVLAGSNMTI-CCMSPTKVLSGQIGNTLR 241
Query: 256 TIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
+I + L + S+ + I + + +GT V+ PP+
Sbjct: 242 PLIHLYGQTVA----IHILNIPVSENSGTNIIFITDDDVYGT--------VVFAGYPPDV 289
Query: 316 PLKPSNITKSSCNL--EWRAPRDDG--GTDILHYVVEKMDMETGRW--VPMGDVSGTYTR 369
P K S T + W R G G Y + + G + TY
Sbjct: 290 PQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRL 349
Query: 370 AENLIEGHD-YNFRVKAVNKIG--ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 426
+ G + +NF + N +G +S ++ + A P V D V
Sbjct: 350 GVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHD------PTSLKVKDINSTVV 403
Query: 427 DLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI----VPANITATSVPDLKEGEEYEFR 482
W P + IE E + +V L Y FR
Sbjct: 404 TFSWYLPGNFTKINL-LCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFR 462
Query: 483 VIAVNKGGPGEPSKASAPVT 502
V +K + S+ S
Sbjct: 463 VRCSSKTF-WKWSRWSDEKR 481
Score = 40.3 bits (93), Expect = 0.002
Identities = 61/421 (14%), Positives = 125/421 (29%), Gaps = 64/421 (15%)
Query: 244 PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 303
P P I KDRF + ++T +K+ GD + + K
Sbjct: 25 PAPLGVSPGTVKDICIKDRFHSCHPLETTNVKIPALSPGDHEVTINYLNGFQSKFTLNEK 84
Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPR--DDGGTDILHYVVEKMDMETGRWVPMG 361
V IP PE ++ SS L+W ++ + ++ + V +
Sbjct: 85 -DVSLIPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNAT-WEIKVLQNPRTEPVALV 142
Query: 362 DVSGTYTRAENL----------IEGHDYNFRVKAVNK---------IGESLPLVCQSPIT 402
++ + + + ++ ++ ++ + PL S I
Sbjct: 143 LLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIR 202
Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVP 462
+ P V G + + + P K I + YG I+
Sbjct: 203 NTETNVFPQDK----VVLAGSN-MTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILN 257
Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGG-PGEP------SKASAPVTCK------PRFVA 509
++ S ++ + + V G P P + + C V
Sbjct: 258 IPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVG 317
Query: 510 PVIDQYAL--------------QDMTAQEYNPFITLLFK----NFVLDLNEGL---KSMV 548
P +Y L + +T + Y + + NF L L +S V
Sbjct: 318 PRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAV 377
Query: 549 KLSYIDNVPGK-PSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKIT 607
++ + V P+ + D++ + W P N ++E + S + ++
Sbjct: 378 VINVTERVAPHDPTSLKVKDINSTVVTFSWYLP-GNFTKINLLCQIEICKANSKKEVRNA 436
Query: 608 P 608
Sbjct: 437 T 437
Score = 36.5 bits (83), Expect = 0.025
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 468
+ D T D W P + I+ + +C P T
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDR------FHSCH-PLETTNV 55
Query: 469 SVPDLKEGEEYEFRVIAVNKGGP 491
+P L G ++E + +N
Sbjct: 56 KIPALSPG-DHEVTINYLNGFQS 77
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 70.8 bits (173), Expect = 8e-15
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 13/125 (10%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD--------ILHYVVEKMDM-ETG 355
+ S P S+I + L W P + + Y V + G
Sbjct: 13 AFEALLSNIVKP-VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDG 71
Query: 356 RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQ 415
++ + T +L DY+ +V+A + P PD P
Sbjct: 72 KYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPS---EAEIFTTLSCEPDIPNP 128
Query: 416 PTVTD 420
P ++
Sbjct: 129 PRISG 133
Score = 65.4 bits (159), Expect = 5e-13
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 8/112 (7%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS--------PISQYIIEKKP 450
K +P +D V L W+PP + Y +
Sbjct: 7 GDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISS 66
Query: 451 KYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+ + T ++ DLK +Y +V A G PS+A T
Sbjct: 67 TGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTT 118
Score = 37.7 bits (87), Expect = 0.002
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 83 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
G+ + DL Y +V A G PS+
Sbjct: 79 GEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE 114
Score = 37.7 bits (87), Expect = 0.002
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 169 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
G+ + DL Y +V A G PS+
Sbjct: 79 GEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE 114
Score = 37.7 bits (87), Expect = 0.003
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGS--------AIKGYEVERRERTSGRWIK 605
+ KP A+D+ + + W P S + GYEV K
Sbjct: 17 LLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYK 74
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 72.4 bits (178), Expect = 9e-15
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 213 KVSPYINRD--QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 270
+ +P + GS + IG P+P W + + + I N +
Sbjct: 98 QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEH 157
Query: 271 STKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
T L + + ++ +G Y + + N +GT V + D
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196
Score = 72.0 bits (177), Expect = 1e-14
Identities = 20/102 (19%), Positives = 44/102 (43%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
++ D+ + G + ++G P+P +W +I ++K+ +D ++ L V ++
Sbjct: 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ 72
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
D G+YT N G + ++K+ + P G
Sbjct: 73 EDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYY 114
Score = 35.4 bits (82), Expect = 0.027
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
AP I R+ + D+ G + I+G P+P + W G L
Sbjct: 7 APGI-RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL 48
Score = 31.6 bits (72), Expect = 0.50
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
+ G+TL+ IG PVP + W G L
Sbjct: 112 KYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLL 144
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 69.3 bits (170), Expect = 1e-14
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Query: 211 AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDD 269
+ P+ + D+ V+ G D V G P P W + + K++ ++
Sbjct: 5 SSGFRPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63
Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
L + D+GIYT N G + + ++ V S P
Sbjct: 64 GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
Score = 36.6 bits (85), Expect = 0.004
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
PH + GD+ + G + D + G P P + W+ G P+
Sbjct: 9 RPHF-LQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV 50
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 69.5 bits (170), Expect = 1e-14
Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 233 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST----KLKVFDSKRGDSGIYT 288
+ V G P PT WL N + + + L ++G YT
Sbjct: 22 EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
Query: 289 LAVKNSWGTDKGTAKVTVLDIPSPPEG--PLKPSNIT 323
L KN GT T L P P + P P +T
Sbjct: 82 LIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITVT 118
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 74.2 bits (182), Expect = 1e-14
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Query: 190 LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 249
L+ A A+K + + ++ G NV G+P P
Sbjct: 196 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 255
Query: 250 WLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
WL N+ + S D + + ++ + DSG Y L VKN +G++ V+V
Sbjct: 256 WLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
Score = 56.8 bits (137), Expect = 6e-09
Identities = 35/255 (13%), Positives = 71/255 (27%), Gaps = 37/255 (14%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS 271
P+ +V N V + W ++ I ++ + +
Sbjct: 5 FTGPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT 62
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEW 331
L + + + D+GIY + +K+ G DK K+ K ++ + ++
Sbjct: 63 --LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS 120
Query: 332 RAPRDDGGTDILHYVVEKMDMETGRW------------VPMGDVSGTYT-RAENLIEGHD 378
A G + +V ++ W V G +
Sbjct: 121 TA----EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 176
Query: 379 YNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK 435
+ ++ + ++ L Q+ A F R + E +
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA------------EKNRARV 224
Query: 436 DGGSPISQYIIEKKP 450
GG P I E K
Sbjct: 225 LGGLPDVVTIQEGKA 239
Score = 54.5 bits (131), Expect = 3e-08
Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 5/139 (3%)
Query: 186 EFRVLAVNKGG----PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI 241
+ V+ + G + D + ++ L G +
Sbjct: 75 IYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFV-TY 133
Query: 242 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 301
W N I DR K + L++ + D G Y + + + + T
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 193
Query: 302 AKVTVLDIPSPPEGPLKPS 320
++ +
Sbjct: 194 VDLSGQAYDEAYAEFQRLK 212
Score = 36.0 bits (83), Expect = 0.031
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
+ + + G L N+ G+P P V W L
Sbjct: 221 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL 263
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 68.9 bits (169), Expect = 1e-14
Identities = 20/86 (23%), Positives = 31/86 (36%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
+ +V G N F +NV +P +W N + + + N L++ D
Sbjct: 15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTD 74
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLD 308
DSG Y N G A + V
Sbjct: 75 DSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 35.3 bits (82), Expect = 0.008
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
AP I R + ++ G +F N+ +P V W G L
Sbjct: 8 APRITLR-MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQ 50
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 69.5 bits (170), Expect = 2e-14
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 3/107 (2%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGPW 455
P + D P D V + W K S + Y + + +
Sbjct: 8 FPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSAS 67
Query: 456 EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
K + + LK YEF V+ S + T
Sbjct: 68 AKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATT 114
Score = 59.1 bits (143), Expect = 7e-11
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 305 TVLDIPSPPEGP--LKPSNITKSSCNLEWRAP---RDDGGTDILHYVVE-KMDMETGRWV 358
+V D+ +P P ++ +T + + W ++ +++ Y V +
Sbjct: 11 SVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKY 70
Query: 359 PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES 392
D + A L Y F V S
Sbjct: 71 KSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSS 104
Score = 35.2 bits (81), Expect = 0.012
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDP 117
L YEF V+ S
Sbjct: 84 GLKPNTMYEFSVMVTKNRRSSTWSMT 109
Score = 35.2 bits (81), Expect = 0.012
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDP 203
L YEF V+ S
Sbjct: 84 GLKPNTMYEFSVMVTKNRRSSTWSMT 109
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 68.9 bits (169), Expect = 2e-14
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
P + G+ V L W P++ G I +Y I+ K + + A T
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTR 67
Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
+V LK G Y F+V A G G S+A T KP
Sbjct: 68 ATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP 105
Score = 54.7 bits (132), Expect = 2e-09
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDV 363
+ PS ++ ++S +L W+ P G IL Y ++ + +
Sbjct: 6 SGQAAPSQVVV-IRQERAGQTSVSLLWQEPEQPNGI-ILEYEIKYYEKDKEMQSYSTLKA 63
Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGES 392
T L G Y F+V+A G
Sbjct: 64 VTTRATVSGLKPGTRYVFQVRARTSAGCG 92
Score = 42.7 bits (101), Expect = 3e-05
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P + + + + WQ+P G I YE++ E+ T + T+
Sbjct: 10 APSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRA 68
Score = 36.2 bits (84), Expect = 0.005
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 71 NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
+ + + T + V L G +Y F+V A G G S
Sbjct: 51 KDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAM 98
Score = 36.2 bits (84), Expect = 0.005
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+ + + T + V L G +Y F+V A G G S
Sbjct: 55 MQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAM 98
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 68.2 bits (167), Expect = 2e-14
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATS 469
DRP TD D + + W P+ +S+Y + E
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
+ L+ G EY V+A++ +P +
Sbjct: 59 LQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 92
Score = 68.2 bits (167), Expect = 2e-14
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
+I P L +++ S + W +P+ + Y V E G G
Sbjct: 1 NIDRPKG--LAFTDVDVDSIKIAWESPQGQ----VSRYRVTYSSPEDGIHELFPAPDGEE 54
Query: 368 TRA--ENLIEGHDYNFRVKAVNKIGESLPLV 396
A + L G +Y V A++ ES PL+
Sbjct: 55 DTAELQGLRPGSEYTVSVVALHDDMESQPLI 85
Score = 32.8 bits (75), Expect = 0.052
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
L G++Y V+A++ +P T
Sbjct: 61 GLRPGSEYTVSVVALHDDMESQPLIGTQ 88
Score = 32.8 bits (75), Expect = 0.052
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
L G++Y V+A++ +P T
Sbjct: 61 GLRPGSEYTVSVVALHDDMESQPLIGTQ 88
Score = 30.5 bits (69), Expect = 0.39
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 560 PSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
P TDVD D IKI W+ P + Y V G ++ P P + +
Sbjct: 5 PKGLAFTDVDVDSIKIAWESPQGQ----VSRYRVTYSSPEDGIH-ELFPAPDGEEDT 56
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 68.5 bits (168), Expect = 3e-14
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 458
I G P +P + + L WTPP+ D I+ Y + K E+
Sbjct: 7 GDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQR 63
Query: 459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+ + + LK Y FR+ A + G G + + T
Sbjct: 64 ITIEPGTSYR-LQGLKPNSLYYFRLAARSPQGLGASTAEISART 106
Score = 67.0 bits (164), Expect = 9e-14
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
T +P P K +++S L W PR D I +Y + D E G +
Sbjct: 13 TQTGVPGQPLN-FKAEPESETSILLSWTPPRSDT---IANYELVYKDGEHGEEQRITIEP 68
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
GT R + L Y FR+ A + G
Sbjct: 69 GTSYRLQGLKPNSLYYFRLAARSPQGLGAS 98
Score = 47.7 bits (114), Expect = 6e-07
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
VPG+P +A + I + W P S+ I YE+ ++ G +IT +P +
Sbjct: 17 VPGQPLNFKAEPESETSILLSWTPPRSDT---IANYELVYKDGEHGEEQRITIEPGTSYR 73
Score = 38.1 bits (89), Expect = 0.001
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 89 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
++ L + Y FR+ A + G G +
Sbjct: 73 RLQGLKPNSLYYFRLAARSPQGLGASTAEI 102
Score = 38.1 bits (89), Expect = 0.001
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
++ L + Y FR+ A + G G +
Sbjct: 73 RLQGLKPNSLYYFRLAARSPQGLGASTAEI 102
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 67.7 bits (166), Expect = 3e-14
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 280
Q+ G + ++ + T+ W + + ++++I +D L V D
Sbjct: 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDIT 66
Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTV 306
+ D G Y V N +G D A++ V
Sbjct: 67 KLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 27.7 bits (62), Expect = 4.2
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 7 RHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPL 43
+ G +K+ I V W G L
Sbjct: 6 GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQL 43
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 67.7 bits (166), Expect = 3e-14
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
L+D V G + W N + + DR K+V + KL + ++
Sbjct: 13 PLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALT 70
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
D G Y A AKV V+ PS
Sbjct: 71 EDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 71.3 bits (174), Expect = 4e-14
Identities = 35/216 (16%), Positives = 58/216 (26%), Gaps = 20/216 (9%)
Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNL--EWRAPRDDGGTDI---LHYVVEKMDMETG 355
K GP + T+ +L W G Y +E +
Sbjct: 9 DPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLC 68
Query: 356 RWVPMGDVSGTYTR-----AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
R G + RV A + ++ + +
Sbjct: 69 RLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVV------LL 122
Query: 411 DRPGQPTVTDWG-KDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITAT 468
D P HV L W PP + + +Y ++ G + + T
Sbjct: 123 DAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTEC 182
Query: 469 SVPDLKEGEEYEFRVIAVNKGGP--GEPSKASAPVT 502
+ +L+ Y F V A G S+ S PV+
Sbjct: 183 VLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVS 218
Score = 41.6 bits (97), Expect = 3e-04
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 287 YTLAVKNSWGTDKGTAKVTVLDI--PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILH 344
L V + G + + + ++ P G + L W P + T +
Sbjct: 97 LELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIR 156
Query: 345 YVVEKMDMETGRWVPMGDVSGTYTRAE--NLIEGHDYNFRVKA 385
Y V+ + V ++ T NL Y F V+A
Sbjct: 157 YEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA 199
Score = 29.3 bits (65), Expect = 3.4
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 530 TLLFKNFVLDLN--EGLKSMVKLSYIDNV--PGKPSKPEATDVD-KDHIKIKWQQPISNG 584
T F L + G ++ +I+ V P A D H+ ++W P
Sbjct: 91 TSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETP 150
Query: 585 GSAIKGYEVE-RRERTSGRWIKITPDPIRT 613
++ YEV+ + +G ++ RT
Sbjct: 151 MTSHIRYEVDVSAGQGAGSVQRVEILEGRT 180
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 67.7 bits (166), Expect = 4e-14
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
L D++V G + P K W + + D++ + + +L V + +
Sbjct: 14 ALKDLEVLEGGAATLRCVLSSVAAPVK-WCYGNNVLRPGDKYSLRQEGAMLELVVRNLRP 72
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
DSG Y+ + G +A +TV +PS P
Sbjct: 73 QDSGRYSCSF----GDQTTSATLTVTALPSGP 100
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 67.4 bits (165), Expect = 5e-14
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 222 QLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 280
+L ++V G + F+ + W T+ S RF+ + L V ++
Sbjct: 14 RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAA 73
Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
D+G +V+ A + V + P G
Sbjct: 74 PSDAGEVVFSVRG----LTSKASLIVRERSGPSSG 104
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 67.6 bits (165), Expect = 5e-14
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 8/103 (7%)
Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANIT 466
G D P V + + W + Y I G + VP +
Sbjct: 2 GVSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVH 57
Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA---SAPVTCKPR 506
++ LK G +Y V AV P +P++ R
Sbjct: 58 TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYR 100
Score = 56.5 bits (136), Expect = 5e-10
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT 366
+ + P L+ T +S + W + R +Y + + V V G
Sbjct: 1 MGVSDVPRD-LEVVAATPTSLLISWDSGRGS----YQYYRITYGETGGNSPVQEFTVPGP 55
Query: 367 YTRA--ENLIEGHDYNFRVKAVN---KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD 420
A L G DY V AV + +SPI+ D+P Q
Sbjct: 56 VHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTE-IDKPSQHHHHH 113
Score = 29.9 bits (67), Expect = 0.85
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIK 605
V P E + I W + + Y + E ++
Sbjct: 3 VSDVPRDLEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQ 48
Score = 28.3 bits (63), Expect = 2.5
Identities = 8/27 (29%), Positives = 8/27 (29%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPT 118
L G Y V AV P T
Sbjct: 63 GLKPGVDYTITVYAVTDHKPHADGPHT 89
Score = 28.3 bits (63), Expect = 2.5
Identities = 8/27 (29%), Positives = 8/27 (29%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPT 204
L G Y V AV P T
Sbjct: 63 GLKPGVDYTITVYAVTDHKPHADGPHT 89
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 71.7 bits (176), Expect = 5e-14
Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
K P + + ++ G++ + + G P W + + S ++KI++++ T
Sbjct: 190 KEPPVFRK-KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 248
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
+ + + D G Y N G+ +T+
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 70.5 bits (173), Expect = 1e-13
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 273
P+ + + + G + F +V G W ++ I +K+ + +
Sbjct: 4 APPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
L V +GD+G YT N G D +A++ V + P
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR 100
Score = 64.4 bits (157), Expect = 1e-11
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
+ P + V+ + ++ + G P W ++ I +F++ +
Sbjct: 96 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
L++++ DSG YT N+ G+ + + V PP KP +
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVE 203
Score = 37.0 bits (86), Expect = 0.012
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P + L+ G + F ++ G + W +
Sbjct: 5 PPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG 50
Score = 33.9 bits (78), Expect = 0.12
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P ++ + +++ I G P V W +
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI 140
Score = 33.9 bits (78), Expect = 0.12
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P R+ ++ G + + + G P V W L
Sbjct: 192 PPVF-RKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 67.8 bits (166), Expect = 6e-14
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEK 457
P + P G + ++ + + W P + G ++ Y I +
Sbjct: 7 GPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRV 65
Query: 458 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
+P V L Y V A+ G G+ S ++
Sbjct: 66 THYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 56.7 bits (137), Expect = 5e-10
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVV--EKMDMETGRWVPMGDVSG 365
D+P P L S I +S + W+ P + G + Y + E+ + R
Sbjct: 16 DVPGPVG-HLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVT 73
Query: 366 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
R L Y V A+ G+ S I++ P P
Sbjct: 74 LEYRVTGLTALTTYTIEVAAMTSKGQGQVS--ASTISSGVPPSGP 116
Score = 40.9 bits (96), Expect = 1e-04
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
VPG +++ +K+ WQ+P G + GY + E P T
Sbjct: 17 VPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVT 73
Score = 37.0 bits (86), Expect = 0.003
Identities = 12/50 (24%), Positives = 16/50 (32%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
E N T + +V L Y V A+ G G+ S T
Sbjct: 57 EYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 36.3 bits (84), Expect = 0.006
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+V L Y V A+ G G+ S T
Sbjct: 77 RVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 71.1 bits (173), Expect = 1e-13
Identities = 27/218 (12%), Positives = 52/218 (23%), Gaps = 32/218 (14%)
Query: 310 PSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSG 365
P P + + L W + G + + + W+ +
Sbjct: 3 PLKS-----PQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQN 55
Query: 366 TYTRA-----ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD 420
+ L + R++A + S S + P P V
Sbjct: 56 ITSTKCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGP-----PEVHL 109
Query: 421 WGK-DHVDLEWTPPKKDGGS-----PISQYIIEKKPKYGPWEKACIVPANITATSVPDLK 474
+ + + +P KD Y + E+ + + + L
Sbjct: 110 EAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEE--RIENIYSRHKIYKLS 167
Query: 475 EGEEYEFRVIAVNKGGP--GEPSKASAPVTCKPRFVAP 510
Y +V A G S T + P
Sbjct: 168 PETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPP 205
Score = 69.9 bits (170), Expect = 3e-13
Identities = 26/204 (12%), Positives = 56/204 (27%), Gaps = 16/204 (7%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD-----ILHYVVEKMDMETGRWVPMGDVS 364
PPE L+ + + + D Y + +G + ++
Sbjct: 102 IGPPEVHLEAED---KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIY 158
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
+ + L Y +VKA + + P V+ ++
Sbjct: 159 SRH-KIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQN 217
Query: 425 HVDLEWTPPKKDGGSPI---SQYIIEKKPKYGPWEKACIVPANITATS---VPDLKEGEE 478
+V L+W + + ++ + K N+ T ++ +
Sbjct: 218 YV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGI 276
Query: 479 YEFRVIAVNKGGPGEPSKASAPVT 502
Y RV A + S+ T
Sbjct: 277 YLLRVQASDGNNTSFWSEEIKFDT 300
Score = 41.8 bits (97), Expect = 5e-04
Identities = 17/150 (11%), Positives = 36/150 (24%), Gaps = 27/150 (18%)
Query: 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP--GEPSDPTAPHIARAKKGKCYHLVGTL 137
+ E + K+ L Y +V A G S + +
Sbjct: 153 RIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS 212
Query: 138 LKDS---------------------IYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKV 176
+++ + + ++ P E T+ P+
Sbjct: 213 VQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQN-- 270
Query: 177 LDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
+ + Y RV A + S+
Sbjct: 271 --VFQKGIYLLRVQASDGNNTSFWSEEIKF 298
Score = 39.9 bits (92), Expect = 0.002
Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 15/126 (11%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT---- 468
P + V + + L W + G+ + + + NIT+T
Sbjct: 7 PQKVEVDIIDDNFI-LRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCNF 63
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPF 528
S L EE + R+ A + F Q ++ + +
Sbjct: 64 SSLKLNVYEEIKLRIRAEKENTS--------SWYEVDSFTPFRKAQIGPPEVHLEAEDKA 115
Query: 529 ITLLFK 534
I +
Sbjct: 116 IVIHIS 121
Score = 31.0 bits (69), Expect = 1.1
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 18/143 (12%)
Query: 90 VLDLIEGNQYEFRVLAVNKGG----------PGEPSDPTAPHIARAKKGKCYHLVGTLLK 139
L L + + R+ A + P + P + + K +
Sbjct: 65 SLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIV-IHISPG 123
Query: 140 DSIYEQLKRSGLFDQFHLCPIWEKCA----QTEGDTPKGKVLDLIEGNQYEFRVLAVNKG 195
GL + L IW+ + + E + K+ L Y +V A
Sbjct: 124 TKDSVMWALDGLSFTYSLV-IWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLT 182
Query: 196 GP--GEPSDPTAPHIARAKKVSP 216
G S ++ P
Sbjct: 183 SWKIGVYSPVHCIKTTVENELPP 205
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 69.4 bits (169), Expect = 1e-13
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 24/200 (12%)
Query: 318 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENL 373
P N+ +S N L+W +P G L + + + + + T +L
Sbjct: 4 PPENVRMNSVNFKNILQWESPAFAKGQ--LTFTAQYLSYRIFQDK-CMQTTLTECDFSSL 60
Query: 374 IEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPP 433
+ D+ RV+A S + G P + D + + + P
Sbjct: 61 SKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLA-----DCLHMRFLAP 115
Query: 434 KKDGGS---------PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484
K + Y ++ + + + + +L+ Y +V
Sbjct: 116 KIENEYETWTMKNVYNSWTYNVQYWKQGTDEKF--QITPQYDFEVLRNLEPWTTYCVQVR 173
Query: 485 AVNKGGPGEPSKASAPVTCK 504
+ S PV +
Sbjct: 174 GFLPDRNK-AGEWSEPVCEQ 192
Score = 47.0 bits (111), Expect = 4e-06
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
Query: 428 LEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGEEYEFRVIA 485
L+W P G + + Y ++ C+ T T L + ++ RV A
Sbjct: 19 LQWESPAFAKGQLT--FTAQYL-SYRIFQDKCM---QTTLTECDFSSLSKYGDHTLRVRA 72
Query: 486 VNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQD 519
+ + + P + L D
Sbjct: 73 EFADEHSDWVQITFSPVDDTIIGPPGMQVEVLAD 106
Score = 34.7 bits (79), Expect = 0.055
Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 20/148 (13%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS----------DPTAPHIAR 124
+KC QT + L + + RV A + P +
Sbjct: 44 QDKCMQT--TLTECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQV 101
Query: 125 AKKGKCYHLVGTL-LKDSIYEQLKRSGLFDQFH-LCPIWEKCAQTEGDTPKG----KVLD 178
C H+ ++ YE +++ + W++ + + +
Sbjct: 102 EVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRN 161
Query: 179 LIEGNQYEFRVLAVNK--GGPGEPSDPT 204
L Y +V GE S+P
Sbjct: 162 LEPWTTYCVQVRGFLPDRNKAGEWSEPV 189
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 66.2 bits (162), Expect = 1e-13
Identities = 29/118 (24%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 257
G AP +L K+ G F V G P P W + I
Sbjct: 1 GSSGSSGAPFFEM-----------KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 49
Query: 258 I-SKDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
D + I D T L S D G YT+ N G T ++ V + S P
Sbjct: 50 SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
Score = 34.6 bits (80), Expect = 0.015
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
AP + + L K+ G + F + G P P + W G ++
Sbjct: 8 APFFEMK-LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS 50
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 66.0 bits (161), Expect = 2e-13
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 2/94 (2%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITAT 468
P VT + L W P+ G + Y ++ K + +
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+ LK G Y +V A ++ G G + T
Sbjct: 67 ELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT 100
Score = 58.6 bits (142), Expect = 6e-11
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE--KMDMETGRWVPMGD 362
+ P ++ + + SS +L W PR G +L Y V+ + E V
Sbjct: 3 SGSSGPPAVSD-IRVTRSSPSSLSLAWAVPRAPSGA-VLDYEVKYHEKGAEGPSSVRFLK 60
Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGES 392
S L G Y +V+A ++ G
Sbjct: 61 TSENRAELRGLKRGASYLVQVRARSEAGYG 90
Score = 40.5 bits (95), Expect = 1e-04
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
P S T + + W P + G A+ YEV+ E+ + +
Sbjct: 7 GPPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLK 60
Score = 37.1 bits (86), Expect = 0.002
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
E + + ++ L G Y +V A ++ G G
Sbjct: 47 EKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQE 95
Score = 36.3 bits (84), Expect = 0.004
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 203
+ + ++ L G Y +V A ++ G G
Sbjct: 53 PSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQE 95
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 65.4 bits (160), Expect = 2e-13
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKR 281
L D VR G + I V GEP P WL N + + RF + +L++ ++R
Sbjct: 12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER 71
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
GD+G YT N +G + A++ V
Sbjct: 72 GDAGFYTCKAVNEYGARQCEARLEV 96
Score = 34.6 bits (80), Expect = 0.016
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
P + L D + G + + GEP P V W P+
Sbjct: 5 PPTF-KVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR 47
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 65.8 bits (161), Expect = 2e-13
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
+V+P I L + G + E G P P W ++ T++ + + +++
Sbjct: 8 RVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN- 65
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
L + ++ D G+YT + G K A +
Sbjct: 66 -LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
Score = 33.1 bits (76), Expect = 0.056
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
AP I +L + S G +++ G P P + W L
Sbjct: 10 APTI-TGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL 51
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 65.5 bits (160), Expect = 2e-13
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITAT 468
P + V + + W S +S Y I G + VP + +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQEFTVPGSSSTA 60
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
++ L G +Y V A S +P +
Sbjct: 61 TISGLSPGVDYTITVYAYYSYYDLYYS--YSPSS 92
Score = 50.9 bits (122), Expect = 3e-08
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 368
+ S P L+ T +S + W A + +Y + + V V G+ +
Sbjct: 4 VSSVPTK-LEVVAATPTSLLISWDASSSS----VSYYRITYGETGGNSPVQEFTVPGSSS 58
Query: 369 RA--ENLIEGHDYNFRVKAVNKIGESLP 394
A L G DY V A +
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYY 86
Score = 29.3 bits (66), Expect = 1.1
Identities = 6/28 (21%), Positives = 7/28 (25%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
L G Y V A S +
Sbjct: 64 GLSPGVDYTITVYAYYSYYDLYYSYSPS 91
Score = 29.3 bits (66), Expect = 1.1
Identities = 6/28 (21%), Positives = 7/28 (25%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
L G Y V A S +
Sbjct: 64 GLSPGVDYTITVYAYYSYYDLYYSYSPS 91
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 71.0 bits (174), Expect = 4e-13
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
PY + L ++ G V G P W + S +K+ + L
Sbjct: 6 PYF-IEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ D G YT +NS G +A + + + PP K ++
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVH 112
Score = 70.6 bits (173), Expect = 6e-13
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 4/126 (3%)
Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
++ A N G S A +V P+ + + + + G + F +V G
Sbjct: 171 QYNCSASNPLGTASSS---AKLTLSEHEVPPFFDL-KPVSVDLALGESGTFKCHVTGTAP 226
Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305
W ++ I +K+ + + L V +GD+G YT N G D +A++
Sbjct: 227 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286
Query: 306 VLDIPS 311
V + P
Sbjct: 287 VQEPPR 292
Score = 69.1 bits (169), Expect = 2e-12
Identities = 20/104 (19%), Positives = 38/104 (36%)
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 279
+L D+ G F+ + G W + + + L++ +
Sbjct: 105 ARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQT 164
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ G Y + N GT +AK+T+ + PP LKP ++
Sbjct: 165 DQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVD 208
Score = 69.1 bits (169), Expect = 2e-12
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
K P + + ++ G++ + + G P W + + S ++KI++++ T
Sbjct: 382 KEPPVFRK-KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 440
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ + + D G Y N G+D +T+ PP K S+I+
Sbjct: 441 SIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA---PPRFVKKLSDIS 488
Score = 65.6 bits (160), Expect = 2e-11
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
+ P + V+ + ++ + G P W ++ I +F++ +
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
L++++ DSG YT N+ G+ + + V PP KP +
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVE 395
Score = 64.1 bits (156), Expect = 7e-11
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKS 271
K P +LSDI G + + G + W + I+ D I +
Sbjct: 475 KAPPRF-VKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENI 533
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
L+ ++ ++G YT +KN GT + A ++VL+
Sbjct: 534 ATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 33.6 bits (77), Expect = 0.23
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P + L+ G + F ++ G + W +
Sbjct: 197 PPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI 238
Score = 33.2 bits (76), Expect = 0.25
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P ++ + +++ I G P V W +
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI 332
Score = 32.1 bits (73), Expect = 0.58
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P+ L ++ + G + + G P + W L P
Sbjct: 5 PPYF-IEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAP 50
Score = 31.7 bits (72), Expect = 0.91
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 6 RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
R L D+ + G + F+ I G V W G L
Sbjct: 105 ARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELL 142
Score = 31.3 bits (71), Expect = 1.2
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P + L DI G ++ A I G V W +
Sbjct: 477 PPRF-VKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEI 518
Score = 31.3 bits (71), Expect = 1.2
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P R+ ++ G + + + G P V W L
Sbjct: 384 PPVF-RKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 425
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 64.4 bits (157), Expect = 5e-13
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 202 DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD 261
+ AP+ +K+ V A + +F G P+PT WL N +
Sbjct: 1 NKRAPYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 53
Query: 262 RFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
R ++ L + D G YT V+N +G+ T + V+
Sbjct: 54 RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 31.6 bits (72), Expect = 0.14
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 1 APHI---DRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
AP+ ++ + A T+KF G P+P + W G
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 49
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 64.4 bits (157), Expect = 6e-13
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-----VN 267
+P I + + ++ V G P P +W N + +
Sbjct: 2 HFAPTITFLE----SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 268 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
+ L++ + ++G YTL KN +G D+ + P
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 64.3 bits (157), Expect = 6e-13
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
++D+ V+A F V E + K W N + + R I + + KL + D +
Sbjct: 14 DIADLTVKAAEQAVFKCEVSDEKVTGK-WYKNGVEVRPSKRITISHVGRFHKLVIDDVRP 72
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIP--SPPEG 315
D G YT + +AK+ L+I P G
Sbjct: 73 EDEGDYTFVPDGYALS--LSAKLNFLEIKVSGPSSG 106
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 70.9 bits (173), Expect = 6e-13
Identities = 49/332 (14%), Positives = 97/332 (29%), Gaps = 37/332 (11%)
Query: 14 LSAGTTLKFDANIIGEPVP-HVDW-RAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGN 71
GTT + P P H+ W P + + ++ +G
Sbjct: 435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494
Query: 72 HPIWEKCAQTEGDTPKGKVLDLIEGNQYE----FRVLAVNKGGPGE---------PSDPT 118
+ I Q K K + + ++ AVNK G GE + T
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEIT 554
Query: 119 APHIARAKKGK-----C------------YHLVGTLLKDSIYEQLKRSGLFDQFHLCPIW 161
+ + + C Y L L + E
Sbjct: 555 LQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNA 614
Query: 162 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD 221
+ + D ++ + +Q ++ LA ++ + ++V+P I
Sbjct: 615 TMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHC--VVRQLTVLERVAPTITG- 671
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
L + G + E G P P W ++ T++ + + +++ L + ++
Sbjct: 672 NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIRRVRK 729
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
D G+YT + G K A +
Sbjct: 730 EDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 761
Score = 59.8 bits (144), Expect = 2e-09
Identities = 51/372 (13%), Positives = 104/372 (27%), Gaps = 76/372 (20%)
Query: 213 KVSPYIN--RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 270
P++ S ++ G +G P P +W N I + S K
Sbjct: 325 HEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA----- 379
Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDK--GTAKVTVLDIPSPPEGPL----------- 317
L + + D+G YT+ + N +K + V P E L
Sbjct: 380 GHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGT 439
Query: 318 ------------KPSNIT-------------KSSCNLEWRAPRDDGGTDILHYVVEKMDM 352
P +I + ++ P ++ + K+++
Sbjct: 440 TQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEV 499
Query: 353 ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGR 409
++ + + T + ++ +AVNK+G + P
Sbjct: 500 NKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRG-----PEIT 554
Query: 410 PDRPGQPTVTD--------WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIV 461
QPT + +L W K G P+ ++ E
Sbjct: 555 LQPDMQPTEQESVSLWCTADRSTFENLTW---YKLGPQPLPIHVGELPTPVCKNLDTLWK 611
Query: 462 PANITATS---------VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVI 512
++ + + ++ ++ +A ++ +T R VAP I
Sbjct: 612 LNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKR-HCVVRQLTVLER-VAPTI 669
Query: 513 DQYALQDMTAQE 524
L++ T
Sbjct: 670 TG-NLENQTTSI 680
Score = 53.6 bits (128), Expect = 2e-07
Identities = 34/298 (11%), Positives = 71/298 (23%), Gaps = 59/298 (19%)
Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
++ R+ ++ ++ + I +
Sbjct: 100 AYKCFYRETDL--ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNL 157
Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305
D +I D K + +G+ K + + + +
Sbjct: 158 NVSLCARYPEKRFVPDGNRISWDSKKG-FTIPSYMISYAGMVFCEAKINDESYQSIMYIV 216
Query: 306 VLDIPSPPEGPLKPSNITKS--------SC----------NLEWRAPRDDGGTDILHYVV 347
V+ + L PS+ + +C + W P L
Sbjct: 217 VVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 276
Query: 348 EKMDMETGRWVPMGDV---------SGTYT-RAENLIEGHDYNFRVKAVNK--------- 388
K + + + G YT A + + + V+ K
Sbjct: 277 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGM 336
Query: 389 -------IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS 439
+GE + + + G P P + W K+ + LE K G
Sbjct: 337 ESLVEATVGERVRIPAKYL-------GYP----PPEIK-WYKNGIPLESNHTIKAGHV 382
Score = 50.5 bits (120), Expect = 1e-06
Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 15/139 (10%)
Query: 187 FRVLAVNKGGPGEPS-DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
+ + G PS P + Q + ++A + + G+
Sbjct: 12 WLCVETRAASVGLPSVSLDLPRL-----------SIQKDILTIKANTTLQI--TCRGQRD 58
Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTK-LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304
W N + +D K L + D+G Y + + V
Sbjct: 59 LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Query: 305 TVLDIPSPPEGPLKPSNIT 323
P + +
Sbjct: 119 QDYRSPFIASVSDQHGVVY 137
Score = 33.2 bits (75), Expect = 0.28
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
AP I +L + S G +++ G P P + W L
Sbjct: 666 APTI-TGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL 707
Score = 32.4 bits (73), Expect = 0.54
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLR 46
++ + G ++ A +G P P + W G PL
Sbjct: 330 VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN 374
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 64.4 bits (157), Expect = 7e-13
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 468
PD P Q + + L W PP+ +P+ Y I+ P +A P +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQA-ETPGSAVDY 61
Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
+ DL Y V + P+ +
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLTSPASITF 92
Score = 53.6 bits (129), Expect = 4e-09
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
P P L+ N+T+ L W+ P++ + Y ++ S
Sbjct: 8 PDGPTQ-LRALNLTEGFAVLHWKPPQNP----VDTYDIQVTAPGAPPLQAETPGSAVDYP 62
Query: 370 AENLIEGHDYNFRVKAVNKIGESLPL 395
+L+ +Y V+ + + P
Sbjct: 63 LHDLVLHTNYTATVRGLRGPNLTSPA 88
Score = 31.3 bits (71), Expect = 0.28
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITP 608
P P++ A ++ + + W+ P + + Y+++ + TP
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQNP----VDTYDIQVTAPGAPPLQAETP 55
Score = 31.3 bits (71), Expect = 0.29
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 162 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVS 215
A+T G + DL+ Y V + P+ AP AK+V+
Sbjct: 49 PLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVT 108
Query: 216 P 216
P
Sbjct: 109 P 109
Score = 28.9 bits (65), Expect = 1.7
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115
A+T G + DL+ Y V + P+
Sbjct: 49 PLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPA 88
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 64.0 bits (156), Expect = 9e-13
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 410 PDRPGQPTVTDWGKDH--VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
PD P ++ + + W PP G I +YI+E + A
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRS--GSKMWASQRAASNF 64
Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
T + +L Y RV AV G G S + + T K
Sbjct: 65 TEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102
Score = 60.9 bits (148), Expect = 9e-12
Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 308 DIPSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT 366
P P L + W P G I Y+VE + W +
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQR-AASN 63
Query: 367 YTRAENLIEGHDYNFRVKAVNKIGES 392
+T +NL+ Y RV AV G
Sbjct: 64 FTEIKNLLVNTLYTVRVAAVTSRGIG 89
Score = 39.7 bits (93), Expect = 3e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 89 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
++ +L+ Y RV AV G G SD
Sbjct: 66 EIKNLLVNTLYTVRVAAVTSRGIGNWSDSK 95
Score = 39.7 bits (93), Expect = 3e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
++ +L+ Y RV AV G G SD
Sbjct: 66 EIKNLLVNTLYTVRVAAVTSRGIGNWSDSK 95
Score = 37.4 bits (87), Expect = 0.002
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 556 VPGKPSKPEATDVDKDH--IKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
P P + + + I W PI G I+ Y VE S W T
Sbjct: 7 GPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQRAASNFT 65
Query: 614 K 614
+
Sbjct: 66 E 66
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 67.5 bits (164), Expect = 9e-13
Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 15/232 (6%)
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG--PLKPSNIT-----KSSCNLEWRAP 334
G + + G + TA + +P+ L + N W++
Sbjct: 1 GMLSLLNTTILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSS 60
Query: 335 RDDGGTDI-LHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL 393
+ T++ LHY + D + + S T L + + ++ V
Sbjct: 61 SEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPRE 120
Query: 394 PLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG 453
P + + P P T+ + ++L W + +++++ + +
Sbjct: 121 PRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWD 177
Query: 454 PWEKACIVPANITATSVPDLKEGEEYEFRV---IAVNKGGPGEPSKASAPVT 502
S+P + + Y FRV G S+ S P+
Sbjct: 178 HSWTE-QSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIH 228
Score = 31.7 bits (71), Expect = 0.52
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPD 609
P P + + +++ W + + V+ R W + + D
Sbjct: 137 PWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSVD 186
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 63.5 bits (155), Expect = 9e-13
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKR 281
++ + G D V G P P W N T+ S D K++ ++ L +
Sbjct: 12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA 71
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVL 307
D+G Y KN G T ++ VL
Sbjct: 72 SDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 34.6 bits (80), Expect = 0.016
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
P + ++ + G + D + G P P V W G +
Sbjct: 5 PPRF-IQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQ 47
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 63.6 bits (155), Expect = 1e-12
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
+ P + L WT P + Y++ G ++ ++P IT+
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEI-LLPGGITSHQ 62
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
+ L Y R+ A+ P S T R P
Sbjct: 63 LLGLFPSTSYNARLQAMWGQSLLPPVSTSF-TTGGLRISGP 102
Score = 54.8 bits (132), Expect = 1e-09
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
G++ + L+ P L+ +T + L W P Y++
Sbjct: 1 GSSGSSGLE---APRD-LEAKEVTPRTALLTWTEPPVR----PAGYLLSFHTPGGQTQEI 52
Query: 360 MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPL 395
+ T + L YN R++A+ P+
Sbjct: 53 LLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPV 88
Score = 30.5 bits (69), Expect = 0.43
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPS 115
L Y R+ A+ P
Sbjct: 65 GLFPSTSYNARLQAMWGQSLLPPV 88
Score = 30.5 bits (69), Expect = 0.43
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPS 201
L Y R+ A+ P
Sbjct: 65 GLFPSTSYNARLQAMWGQSLLPPV 88
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 64.0 bits (156), Expect = 1e-12
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 207 HIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKI 265
H + K +P + KV G + + + + P P W N+ + + DR +
Sbjct: 7 HHSHEHKRAPMFIY-KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISL 65
Query: 266 V-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
++ L + D + D+G YT++ N G ++ V P+
Sbjct: 66 YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
Score = 32.0 bits (73), Expect = 0.14
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
AP + K+ G ++K + I P P + W+ +
Sbjct: 15 APMFIYK-PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT 60
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 63.6 bits (155), Expect = 1e-12
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSK 280
L D+ V+ GS+ F + W + + + + +I L +
Sbjct: 19 DLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLA 78
Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
DSG G + +A + V + PS
Sbjct: 79 LKDSGTIYFEA----GDQRASAALRVTEKPS 105
Score = 34.3 bits (79), Expect = 0.023
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
HI L D+ + G++ F I V W PL
Sbjct: 13 RVHI-IEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPL 54
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 63.2 bits (154), Expect = 2e-12
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 1/86 (1%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
P + L W P++ G I Y I K + + +
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTAR 66
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPS 495
+ L+ G Y +V A G G+ S
Sbjct: 67 IDGLRPGMVYVVQVRARTVAGYGKFS 92
Score = 54.0 bits (130), Expect = 3e-09
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS-GT 366
PS + + T S L W P G IL Y + + E + S
Sbjct: 6 SGPSTVPI-MHQVSATMRSITLSWPQPEQPNGI-ILDYEIRYYEKEHNEFNSSMARSQTN 63
Query: 367 YTRAENLIEGHDYNFRVKAVNKIG 390
R + L G Y +V+A G
Sbjct: 64 TARIDGLRPGMVYVVQVRARTVAG 87
Score = 41.3 bits (97), Expect = 8e-05
Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 1/60 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
P I + W QP G I YE+ E+ +
Sbjct: 7 GPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTA 65
Score = 37.8 bits (88), Expect = 0.001
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
T ++ L G Y +V A G G+ S
Sbjct: 57 MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKM 95
Score = 37.8 bits (88), Expect = 0.001
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
T ++ L G Y +V A G G+ S
Sbjct: 57 MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKM 95
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 62.9 bits (153), Expect = 2e-12
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKACIVPANITATSVP 471
P T+ V L W P + + Y++ P E+ V +
Sbjct: 12 PRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEVLLD 66
Query: 472 DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
L+ G +YE V ++ E A
Sbjct: 67 GLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100
Score = 60.6 bits (147), Expect = 1e-11
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 10/109 (9%)
Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
G++ + P PP L + +T + +L W+ HY+V
Sbjct: 1 GSSGSSG---PLPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEE 52
Query: 360 MGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
+V + L G DY V+++ S ++ P
Sbjct: 53 EREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGP 101
Score = 34.8 bits (80), Expect = 0.014
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
E+ + + P+ + L G YE V ++ E A
Sbjct: 50 EEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRA 94
Score = 34.8 bits (80), Expect = 0.014
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
E+ + + P+ + L G YE V ++ E A
Sbjct: 50 EEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRA 94
Score = 29.8 bits (67), Expect = 0.82
Identities = 6/57 (10%), Positives = 13/57 (22%), Gaps = 6/57 (10%)
Query: 560 PSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
P V + + WQ + Y V + + + +
Sbjct: 12 PRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQV-GRPE 62
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 62.8 bits (153), Expect = 2e-12
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
+ + P W + + + + D + +L + ++K
Sbjct: 16 DKVSLTFTTSERVVLTCELSRVDFPAT-WYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
DSG + VTV D P G
Sbjct: 75 QDSGEFECRT----EGVSAFFGVTVQDPSGPSSG 104
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 62.7 bits (153), Expect = 2e-12
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 16/116 (13%)
Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 257
G A +L++++V F P T W + +
Sbjct: 1 GSSGSSGANCFTE-----------ELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLEL 48
Query: 258 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
+ + + + + +L + ++ DS YT + G + A++ V S P
Sbjct: 49 RASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGP 100
Score = 27.3 bits (61), Expect = 6.3
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
A L ++++ T F P V WR G L
Sbjct: 8 ANCF-TEELTNLQVEEKGTAVFTC-KTEHPAATVTWRKGLLEL 48
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 62.8 bits (153), Expect = 3e-12
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
L + + G+ + W T+ DR + D +L++
Sbjct: 25 GLRNEEATEGATAVLRCELSKMAPVE--WWKGHETLRDGDRHSLRQDGARCELQIRGLVA 82
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
D+G Y G ++ +A +TV +PS P
Sbjct: 83 EDAGEYLCMC----GKERTSAMLTVRAMPSGPS 111
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 65.7 bits (160), Expect = 3e-12
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 201 SDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK 260
++ AP+ +K+ V A + +F G P+PT WL N +
Sbjct: 11 NNKRAPYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 63
Query: 261 DRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS--PPEGPL 317
R ++ L + D G YT V+N +G+ T + V++ P
Sbjct: 64 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAG 123
Query: 318 KPSNIT 323
P+N +
Sbjct: 124 LPANAS 129
Score = 61.1 bits (148), Expect = 1e-10
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL-----------CNDITIISKDRFK 264
P + ++ G + EF V + P +W+ + + + +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 265 IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
+N + L +F+ D+G Y V N G +A +TVL P
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229
Score = 28.7 bits (64), Expect = 4.4
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
+ A T+KF G P+P + W G
Sbjct: 28 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Score = 28.7 bits (64), Expect = 5.4
Identities = 6/47 (12%), Positives = 14/47 (29%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P + + G ++F + + PH+ W +
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 163
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 68.8 bits (168), Expect = 3e-12
Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 11/185 (5%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
PYI Q+ + AG V G PI + W ++ + + K+ +
Sbjct: 525 YGLPYI--RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG--- 579
Query: 273 KLKVFD-SKRGDSGIYTLAVKNSWG-TDKGTAKVTVLDIPSPPEGPLKPSNITK-SSCNL 329
L + + + D YT KN G + +G+ +V V+ +P + L
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639
Query: 330 EWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT--RAENLIEGHDYNFRVKAVN 387
P D +I + ++ + + V + E + H NF A N
Sbjct: 640 HCSVPGGDLPLNI-DWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARN 698
Query: 388 KIGES 392
G
Sbjct: 699 LAGHQ 703
Score = 68.0 bits (166), Expect = 5e-12
Identities = 65/351 (18%), Positives = 105/351 (29%), Gaps = 90/351 (25%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-----VNDDK 270
P I + + + G + G P P W + I + DR+++ VN D
Sbjct: 430 PVIRQA-FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP--SPPEGPLKPSNITKSS-- 326
+ L + D G+Y K+ G + +AK+ V +P E I
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQME----KKAIVAGETL 544
Query: 327 ---C--------NLEWRAPRDDG-------------GTDILHYVVEKMDMETGRWVPMGD 362
C ++ W RD+ GT I+ V D
Sbjct: 545 IVTCPVAGYPIDSIVWE--RDNRALPINRKQKVFPNGTLIIENVERNSD----------- 591
Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGE----SLPLVCQSP--ITAKDPFGRPDRPGQP 416
TYT A N+ G SL + I P + GQ
Sbjct: 592 -QATYT--------------CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQY 636
Query: 417 TVTDW---GKDH-VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
G D ++++WT D G IS+ V + ++
Sbjct: 637 LTLHCSVPGGDLPLNIDWT---LD-GQAISE---------DLGITTSRVGRRGSVLTIEA 683
Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQ 523
++ F A N G + + V PR++ D+ Q A+
Sbjct: 684 VEASHAGNFTCHARNLAGHQQFT-TPLNVYVPPRWILEPTDKAFAQGSDAK 733
Score = 63.0 bits (153), Expect = 2e-10
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 11/111 (9%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
+ V G F G PI T W+ + I +
Sbjct: 341 TAPLSA-KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV--------- 390
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
L++ K+ D G+Y V+N + + +A++ + PP T
Sbjct: 391 -LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEET 440
Score = 61.5 bits (149), Expect = 6e-10
Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 9/144 (6%)
Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRAGSNFEFDINVI 241
++ ++ T + + +S ++ + S
Sbjct: 214 SYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ 273
Query: 242 GEPIPTKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299
G P+P W K + + S L + D+ DSG Y V NS G +
Sbjct: 274 GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 333
Query: 300 GTAKVTVLDIPSPPEGPLKPSNIT 323
+TV +P + P T
Sbjct: 334 VETVLTVT---APLSAKIDPPTQT 354
Score = 56.9 bits (137), Expect = 2e-08
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVN-DDK 270
V P I + + G +V G +P +W + I +
Sbjct: 616 MVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRR 675
Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ L + + +G +T +N G + T + V PP L+P++
Sbjct: 676 GSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV---PPRWILEPTDKA 725
Score = 53.4 bits (128), Expect = 2e-07
Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 14/140 (10%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEF 236
+ + F A N G + + V P + +D GS+ +
Sbjct: 683 AVEASHAGNFTCHARNLAGHQQFT-------TPLNVYVPPRW-ILEPTDKAFAQGSDAKV 734
Query: 237 DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKN 293
+ G P P W + + +D+ + L V + ++ + G Y N
Sbjct: 735 ECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN 794
Query: 294 SWGTDKGTAKVTVLDIPSPP 313
G+ + V ++ + +
Sbjct: 795 GIGSG--LSAVIMISVQAHH 812
Score = 52.6 bits (126), Expect = 3e-07
Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 11/142 (7%)
Query: 187 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 246
F +A+ G S A + A + P ++ + I + E + G P+P
Sbjct: 14 FAAVALIACG----SQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMP 69
Query: 247 TKEWLCNDITIISKDRFKIVNDDKST----KLKVFDS-KRGDSGIYTLAVKNSWGTDKGT 301
W+ +D T + + D + + +Y +N +G+
Sbjct: 70 EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSI--I 127
Query: 302 AKVTVLDIPSPPEGPLKPSNIT 323
++ + +
Sbjct: 128 SRDVHVRAVVAQYYEADVNKEH 149
Score = 38.0 bits (88), Expect = 0.009
Identities = 10/116 (8%), Positives = 34/116 (29%), Gaps = 12/116 (10%)
Query: 220 RDQLSDIKVRAGSNFEFDINV---IGEPIPTKEWLCNDITII-----SKDRFKIVNDDKS 271
++ V G++ + + + + W ++ ++ + S
Sbjct: 142 EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV---LPS 198
Query: 272 TKLKVFDSKRGDS-GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSS 326
+L + + D Y K+ + + + + P P ++ +
Sbjct: 199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254
Score = 33.0 bits (75), Expect = 0.38
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
+ + G F G P+ V W G +
Sbjct: 343 PLSA-KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG 385
Score = 31.4 bits (71), Expect = 1.0
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
R + + AG TL + G P+ + W L
Sbjct: 531 RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRAL 567
Score = 30.3 bits (68), Expect = 2.0
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P D + G+ K + G P P V W+
Sbjct: 714 PPRWILE-PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT 755
Score = 29.9 bits (67), Expect = 3.3
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDW-RAGGNPLNLRP 47
P + I S T + + G P+P + W R+ G + P
Sbjct: 38 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP 85
Score = 29.5 bits (66), Expect = 3.9
Identities = 7/45 (15%), Positives = 11/45 (24%)
Query: 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLR 46
+ S +T+ G PVP W +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRK 292
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 66.1 bits (161), Expect = 3e-12
Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 10/130 (7%)
Query: 197 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 256
P D AP+ R +++ + V A + F G P P+ WL N
Sbjct: 3 PDTGVDTGAPYWTRPERMDK-------KLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 55
Query: 257 IISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS--PP 313
+ R I + L + D G YT V+N +G+ + T + VL+ P
Sbjct: 56 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 115
Query: 314 EGPLKPSNIT 323
P+N T
Sbjct: 116 LQAGLPANQT 125
Score = 55.7 bits (134), Expect = 8e-09
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 12/116 (10%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND------------ITIISKDRF 263
P + ++ GS+ EF V + P +WL + + +
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173
Query: 264 KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP 319
+ + +L++ + D G Y N G + ++V + E ++
Sbjct: 174 ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEA 229
Score = 28.8 bits (64), Expect = 5.2
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
+ + A T++F G P P + W G
Sbjct: 24 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFR 57
Score = 28.4 bits (63), Expect = 5.7
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P + + G+ ++F + + PH+ W +
Sbjct: 113 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKV 159
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 61.5 bits (150), Expect = 4e-12
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSK 280
++ V GS+ F + V+G+P P EW N + I DR +D +L + D
Sbjct: 11 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVT 70
Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTV 306
DS + N G A + V
Sbjct: 71 GEDSASIMVKAINIAGETSSHAFLLV 96
Score = 34.2 bits (79), Expect = 0.022
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
AP I R + + G+ F ++G+P P +W G +
Sbjct: 5 APKIFER-IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE 47
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 62.1 bits (151), Expect = 5e-12
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 14/124 (11%)
Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 257
G P I + + V F G P+PT W + + +
Sbjct: 1 GSSGSSGPPVIRQ-----------GPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLV 49
Query: 258 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPL 317
++D ++ L++ +K GD+G YT G +A + V + P + P
Sbjct: 50 STQDSRIKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP- 106
Query: 318 KPSN 321
+P++
Sbjct: 107 RPTD 110
Score = 31.3 bits (71), Expect = 0.31
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P I R+ + ++ T G PVP + WR G ++ +
Sbjct: 8 PPVI-RQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQD 53
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 67.4 bits (164), Expect = 6e-12
Identities = 27/190 (14%), Positives = 53/190 (27%), Gaps = 21/190 (11%)
Query: 213 KVSPYINR-DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
+IN + D ++ F F + P W + + + + D
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNG 377
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSC---- 327
+ F + + G Y +N + + P+ + S +SC
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR---RKPQVLAEASASQ-ASCFSDG 433
Query: 328 ----NLEWRAPRDDGGTDILHYVVEKMDMETGRWVP-MGDVSGTYTRAENLIEGHDYNFR 382
+ W+ D + + R V S T +E + +
Sbjct: 434 YPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE---AIKGFLVK 490
Query: 383 VKAVNKIGES 392
A N +G S
Sbjct: 491 CCAYNSLGTS 500
Score = 61.3 bits (148), Expect = 4e-10
Identities = 9/95 (9%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
+ + ++V ++ + V + W+ ++ + F + N + + +
Sbjct: 54 EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTE 112
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
+G Y L +++ V++ +
Sbjct: 113 TQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147
Score = 44.3 bits (104), Expect = 1e-04
Identities = 39/326 (11%), Positives = 77/326 (23%), Gaps = 82/326 (25%)
Query: 222 QLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDD------KSTKL 274
L + ++ G + W + + + F++ +
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNI------------ 322
V R D+G YT + +A VT+++ +
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATN-SSEDYEIDQYEEFCFSV 348
Query: 323 ------------TKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT-R 369
T S + D G I + K G Y
Sbjct: 349 RFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQ------------PGEYIFH 396
Query: 370 AENLIEGHDYNFRVK-----AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK- 423
AEN F + V + C S G P P+ T W K
Sbjct: 397 AENDDAQFTKMFTLNIRRKPQVLAEASASQASCFS-------DGYP----LPSWT-WKKC 444
Query: 424 -DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFR 482
D + + + + + ++++++ + + + +
Sbjct: 445 SDKSPNCTEEITEGVWNRKANRKVFGQ--------------WVSSSTLNMSEAIKGFLVK 490
Query: 483 VIAVNKGGPGEPSKASAPVTCKPRFV 508
A N G F+
Sbjct: 491 CCAYNSLGTSC-ETILLNSPGPFPFI 515
Score = 35.4 bits (81), Expect = 0.059
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 14/105 (13%)
Query: 228 VRAGSNFEFDINVIGEPIPTKEWL-CNDITIISKDRFKIVNDDKSTKLKVFD-------- 278
+ S + G P+P+ W C+D + + ++ KVF
Sbjct: 419 LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTL 478
Query: 279 --SKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSN 321
S+ + NS GT T + P P
Sbjct: 479 NMSEAIKGFLVKCCAYNSLGTSCETILLNS---PGPFPFIQDGGT 520
Score = 29.3 bits (65), Expect = 4.5
Identities = 4/33 (12%), Positives = 6/33 (18%)
Query: 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
D ++ F P W
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF 367
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 61.2 bits (149), Expect = 7e-12
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
L + G+ + + EW T+ R+ + D +L++ D
Sbjct: 14 DLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSV 71
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPS 320
D+G Y+ G ++ +A +TV +P+ PS
Sbjct: 72 ADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPS 106
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 61.6 bits (150), Expect = 8e-12
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 410 PDRPGQPTVTDWGKDH--VDLEWTPPKKDGGSPISQYIIEKKPKYGPWE---KACIVPAN 464
P TV V + W PP + G I+ YI+ + +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
+ DL Y FR+ A N G G S P+ +
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPL---SDPILFR 104
Score = 50.5 bits (121), Expect = 6e-08
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 310 PSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVE---KMDMETGRWVPMGDVSG 365
S P+ + + + W+ P + G I Y++ ++ W+ +SG
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIME-TISG 66
Query: 366 TYTRA--ENLIEGHDYNFRVKAVNKIGES 392
+L Y FR++A N G
Sbjct: 67 DRLTHQIMDLNLDTMYYFRIQARNSKGVG 95
Score = 40.4 bits (95), Expect = 2e-04
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
GD +++DL Y FR+ A N G G SDP
Sbjct: 64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP 100
Score = 40.4 bits (95), Expect = 2e-04
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 203
GD +++DL Y FR+ A N G G SDP
Sbjct: 64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP 100
Score = 30.4 bits (69), Expect = 0.52
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 557 PGKPSKPEATDVDKDH--IKIKWQQPISNGGSAIKGYEVERRERTSGR---WIKIT 607
P + + + WQ P+ G I Y + + WI T
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMET 63
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 60.8 bits (148), Expect = 9e-12
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
+V+P + L D V G +F +V G P+P WL N I R
Sbjct: 9 EVAPSFSS-VLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ-PIQYARSTCEAGVAE- 65
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
L + D+ D G YT +N+ G +A VTV
Sbjct: 66 -LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 35.8 bits (83), Expect = 0.005
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
AP L D + G ++ G PVP + W G P+
Sbjct: 11 APSF-SSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 63.1 bits (153), Expect = 1e-11
Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 19/192 (9%)
Query: 321 NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT-----RAENLIE 375
++ S+C EW+ + L + + + + + + + +G ++++
Sbjct: 13 YMSISTC--EWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVS 70
Query: 376 GHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK 435
+Y + A ++ + +P PG TV D + L W+ P
Sbjct: 71 ADNYTLDLWAGQQLLWKGSFKPSEHV-------KPRAPGNLTVHTNVSDTLLLTWSNPYP 123
Query: 436 DGGSPIS--QYIIEKKPKYGPWE-KACIVPANITATSVP--DLKEGEEYEFRVIAVNKGG 490
+ Y + + P + + V + + LK G Y RV A +
Sbjct: 124 PDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAY 183
Query: 491 PGEPSKASAPVT 502
S+ S
Sbjct: 184 NTTWSEWSPSTK 195
Score = 29.6 bits (66), Expect = 2.4
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 71 NHPIWEKCAQTEGDTPKGKVL--DLIEGNQYEFRVLAVNKGGPGEPSD 116
N P + P ++ L G Y RV A + S+
Sbjct: 142 NDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSE 189
Score = 29.2 bits (65), Expect = 3.1
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSD 202
L G Y RV A + S+
Sbjct: 165 TLKSGISYRARVRAWAQAYNTTWSE 189
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 64.9 bits (157), Expect = 1e-11
Identities = 37/314 (11%), Positives = 68/314 (21%), Gaps = 66/314 (21%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
PP L S + W P L Y D + +
Sbjct: 3 TQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGD----KQDKKIAPETRRSI 58
Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 429
L E + E P + + + ++
Sbjct: 59 EVPLNERICLQVGSQCSTNESEK-PSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCS 117
Query: 430 WTPPKKDGGSPISQYIIEKKPKYGPWEKAC---IVPANITATSVP----DLKEGEEYEFR 482
W P + SP + Y + + C S E++ +
Sbjct: 118 WLPGR--NTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQ 175
Query: 483 VIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNE 542
++ + G +PS P+T
Sbjct: 176 IMVKDNAGKIKPSFNIVPLTS--------------------------------------- 196
Query: 543 GLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGR 602
VK P P + D + ++W+ P + + YEVE +
Sbjct: 197 ----RVK-------PDPPHIKNLS-FHNDDLYVQWENPQNFISRCLF-YEVEVNNSQTET 243
Query: 603 WIKITPDPIRTKTS 616
+ +
Sbjct: 244 HNVFYVQEAKCENP 257
Score = 52.2 bits (124), Expect = 2e-07
Identities = 28/275 (10%), Positives = 66/275 (24%), Gaps = 42/275 (15%)
Query: 260 KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG--PL 317
D+ ++ + + + SPPEG
Sbjct: 43 GDKQDKKIAPETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCI---SPPEGDPES 99
Query: 318 KPSNIT-----KSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAEN 372
+ + S W R+ + +Y + + ++
Sbjct: 100 AVTELQCIWHNLSYMKCSWLPGRN--TSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGC 157
Query: 373 LIEGHD--------YNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
+ ++ ++ + G+ P I +PD P ++ + D
Sbjct: 158 SFDLTKVKDSSFEQHSVQIMVKDNAGKIKP---SFNIVPLTSRVKPDPPHIKNLS-FHND 213
Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPA-------------NITATSVP 471
+ ++W P+ + Y +E V N + VP
Sbjct: 214 DLYVQWENPQNFISRCL-FYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVP 272
Query: 472 DLKEGEEYEFRVIA----VNKGGPGEPSKASAPVT 502
+ R+ + S S ++
Sbjct: 273 GVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMS 307
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 62.5 bits (152), Expect = 2e-11
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
LS +++ G + F IGEP + IIS R + + ++L ++++
Sbjct: 8 SLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 67
Query: 282 GDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGPLKPSNIT 323
D+GIY ++ G + T + + S
Sbjct: 68 EDAGIYRCQATDAKGQTQEATVVLEIY---QKLTFREVVSPQE 107
Score = 53.2 bits (128), Expect = 3e-08
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDK 270
R+ +S + + G + E V P P WL ++ +T IS +RF ++ ++
Sbjct: 94 YQKLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 151
Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
L++ + + D GIY + + + V+
Sbjct: 152 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 33.2 bits (76), Expect = 0.13
Identities = 6/47 (12%), Positives = 11/47 (23%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
R + + G + + P P V W +
Sbjct: 96 KLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 141
Score = 33.2 bits (76), Expect = 0.15
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
+ L ++LS G + F IGEP + G +
Sbjct: 2 LLQV-TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKI 43
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 60.2 bits (146), Expect = 2e-11
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 6/95 (6%)
Query: 413 PGQPTVTDWGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
P + D + + W K + Y + K K A +
Sbjct: 12 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 71
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
V LK YEF V+ S
Sbjct: 72 VTGLKPNTLYEFSVMVTKGRRSSTW---SMTAHGT 103
Score = 50.2 bits (120), Expect = 7e-08
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAP---RDDGGTDILHYVVE-KMDMETGRWVPMGDV 363
P P ++ S ++ + + W + TD +Y V K ++ +
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANA 65
Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGES 392
+ L Y F V S
Sbjct: 66 TTLSYLVTGLKPNTLYEFSVMVTKGRRSS 94
Score = 36.0 bits (83), Expect = 0.007
Identities = 11/48 (22%), Positives = 12/48 (25%)
Query: 71 NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
N P K T V L YEF V+ S
Sbjct: 53 NIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA 100
Score = 35.2 bits (81), Expect = 0.010
Identities = 6/27 (22%), Positives = 7/27 (25%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPT 204
L YEF V+ S
Sbjct: 74 GLKPNTLYEFSVMVTKGRRSSTWSMTA 100
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 59.6 bits (145), Expect = 2e-11
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDS 279
QL D G E + V E +W N I K R++I + K L + +
Sbjct: 13 QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA 71
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
+ D+ Y++ + +AK++V P G
Sbjct: 72 TKADAAEYSVMT----TGGQSSAKLSVDLKSGPSSG 103
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 61.8 bits (150), Expect = 4e-11
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 5/109 (4%)
Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD---RFKIV 266
+ + P I V G P P W + + + + + R K +
Sbjct: 103 QIPRGFPTI-DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQL 161
Query: 267 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPE 314
+ L++ S+ D G Y NS GT A + V
Sbjct: 162 RSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHHH 210
Score = 58.7 bits (142), Expect = 6e-10
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 7/117 (5%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS- 271
+ P R D +G F G+P P W + ++ I DD S
Sbjct: 4 ETPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 272 TKLKVFDSKRG-DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP----LKPSNIT 323
+ L++ + D IY N+ G + ++TVL P G + P
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKV 119
Score = 33.6 bits (77), Expect = 0.11
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
P R D +G F G+P P + W G ++
Sbjct: 6 PPRF-TRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS 48
Score = 32.9 bits (75), Expect = 0.21
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P I + T G P P + W P++
Sbjct: 108 FPTI-DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSN 153
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 59.6 bits (144), Expect = 5e-11
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 236 FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-------LKVFDSKRGDSGIYT 288
+V G+P P+ WL N + + + L++ ++G YT
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 289 LAVKNSWGTDKGTAKVTVLDIP--SPPEGPLKPSNITKSSC 327
L N +G + +D P PE P+ +N T
Sbjct: 80 LLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDP 120
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 59.2 bits (143), Expect = 5e-11
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-----WEKACIVP 462
G R Q +VTD + L W P S + ++ + P ++ +VP
Sbjct: 7 GSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVP 66
Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
+ + DL+ G Y + + + + +A
Sbjct: 67 GTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 103
Score = 54.2 bits (130), Expect = 2e-09
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD----- 362
P L +++T SS L W AP +++ P
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQR 61
Query: 363 ---VSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
V GT A +L G Y+ + + ++ + + T P
Sbjct: 62 ELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA-RTLSGP 109
Score = 29.6 bits (66), Expect = 1.0
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
+ H P+ ++ G + DL G Y + + + TA
Sbjct: 52 EPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 103
Score = 28.8 bits (64), Expect = 2.2
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 73 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
P+ ++ G + DL G Y + + + TA
Sbjct: 57 PLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 103
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 63.3 bits (153), Expect = 7e-11
Identities = 36/337 (10%), Positives = 83/337 (24%), Gaps = 64/337 (18%)
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPR--DDGGT 340
+YT + ++G + +PP+ L+W+ P D
Sbjct: 8 VGCLYTFLISTTFGCTSSSDTEIK---VNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKE 64
Query: 341 DILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVN--KIGESLPLVCQ 398
+ Y ++ ++ + W + + Y +L +G + G +
Sbjct: 65 CTVEYELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWA 124
Query: 399 SPITAKDPFG-RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK 457
P G + ++ W P + + +
Sbjct: 125 ETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGI-GVLLDTNYNLFYWYEGLDHALQ 183
Query: 458 --ACIVPANITAT---SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVI 512
I + + +++ V ++ P S + + + + PV
Sbjct: 184 CVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY 243
Query: 513 DQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDH 572
+T ++
Sbjct: 244 ----------------LTFTRES----------------------------------SCE 253
Query: 573 IKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPD 609
IK+KW P+ + YE+E RE + +
Sbjct: 254 IKLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVEN 290
Score = 60.6 bits (146), Expect = 5e-10
Identities = 27/261 (10%), Positives = 55/261 (21%), Gaps = 22/261 (8%)
Query: 258 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA---KVTVLDIPSPPE 314
I + +K + FD +G + T I
Sbjct: 76 IGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGI 135
Query: 315 GPLKPSNIT-----KSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
++ W+ + ++ +
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNI 195
Query: 370 A-----ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
+ D+ V ++ P+ +P P T T
Sbjct: 196 GCRFPYLEASDYKDFYICVNGSSENK---PIRSSYFTFQLQNIVKPLPPVYLTFTRESSC 252
Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484
+ L+W+ P + Y IE + ++ E + F V
Sbjct: 253 EIKLKWSIPLGPIPARCFDYEIEIREDDTTLVT---ATVENETYTLKTTNETRQLCFVVR 309
Query: 485 AVNK---GGPGEPSKASAPVT 502
+ G S+ S
Sbjct: 310 SKVNIYCSDDGIWSEWSDKQC 330
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 63.5 bits (153), Expect = 7e-11
Identities = 27/188 (14%), Positives = 52/188 (27%), Gaps = 8/188 (4%)
Query: 321 NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYN 380
SC+ E R + L Y + + R ++
Sbjct: 230 GAAVLSCSWEVRKEVASSVSFGLFYKPS--PDAGSAVLLREEECSPVLREGLGSLHTRHH 287
Query: 381 FRVKAVNKIGESLPLVCQSPITAKDPFGRPD--RPGQPTVT-DWGKDHVDLEWTPPKKDG 437
++ + +V P A+ + P++ D L W K
Sbjct: 288 CQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRY 347
Query: 438 GSPISQYIIEKKPKYGPWEKACIVPA-NITATSVPDLKEGEEYEFRVIA--VNKGGPGEP 494
+ I+ + W+ + N + ++P L+ Y RV G G
Sbjct: 348 EHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIW 407
Query: 495 SKASAPVT 502
S+ S +
Sbjct: 408 SEWSEARS 415
Score = 61.9 bits (149), Expect = 2e-10
Identities = 38/322 (11%), Positives = 79/322 (24%), Gaps = 61/322 (18%)
Query: 310 PSPPEGPLKPSNIT----KSSCNLEWRAPRDDGGT-----DILHYVVE-KMDMETGRWVP 359
+ P +P ++ + L W + L + V K ++
Sbjct: 103 LTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAA 162
Query: 360 MGDVSGTYTR--AENLIEGHDYNFRVKAVNKIGES---LPLVCQSPITAKDPFGRPDRPG 414
+ + + E+L+ Y RV+ G P + G +P
Sbjct: 163 ILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQ 222
Query: 415 QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLK 474
G + W K+ S + P G +
Sbjct: 223 NLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSL 282
Query: 475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFK 534
+ ++ + G+ V+ +PR I
Sbjct: 283 -HTRHHCQIPVPDPATHGQYI-----VSVQPRRAEKHIKSS------------------- 317
Query: 535 NFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVE 594
N+ P + T D D ++W+ +E++
Sbjct: 318 -------------------VNIQMAPPSLQVT-KDGDSYSLRWETMKMRYEHIDHTFEIQ 357
Query: 595 RRERTSGRWIKITPDPIRTKTS 616
R+ T+ W + ++ S
Sbjct: 358 YRKDTAT-WKDSKTETLQNAHS 378
Score = 54.2 bits (129), Expect = 7e-08
Identities = 28/196 (14%), Positives = 51/196 (26%), Gaps = 15/196 (7%)
Query: 321 NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT------YTRAENLI 374
+ +C L V + +E D+ + +I
Sbjct: 15 YTSHITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVI 74
Query: 375 EGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK 434
+ PL + +T +P P ++ +DH L W+
Sbjct: 75 PCQSFVVTDVDYFSFQPDRPLGTRLTVT-LTQHVQPPEPRDLQIST-DQDHFLLTWSVAL 132
Query: 435 KDGGSP-----ISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVN 487
S ++ + K WE A I+ +N + + L Y RV
Sbjct: 133 GSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRL 192
Query: 488 KGGPGEPSKASAPVTC 503
G + S
Sbjct: 193 APGSRLSGRPSKWSPE 208
Score = 51.5 bits (122), Expect = 5e-07
Identities = 23/228 (10%), Positives = 47/228 (20%), Gaps = 22/228 (9%)
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNF 234
L+ + Y RV G P+ P + G+
Sbjct: 174 GPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAV 233
Query: 235 EFDINVI-----GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL 289
++ L + + + ++ S L+ +
Sbjct: 234 ---LSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQI 290
Query: 290 AVKNSWGTDKGTAKVTVL----------DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGG 339
V + + V +I P P S +L W +
Sbjct: 291 PVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAP--PSLQVTKDGDSYSLRWETMKMRYE 348
Query: 340 TDILHYVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKA 385
+ ++ + L Y RV+
Sbjct: 349 HIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRV 396
Score = 33.0 bits (74), Expect = 0.26
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 5/114 (4%)
Query: 15 SAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPI 74
A +K NI P P + G+ +LR WE + +
Sbjct: 309 RAEKHIKSSVNIQMAP-PSLQVTKDGDSYSLR--WETMKMRYEHIDHTFEIQYRKDTATW 365
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA--VNKGGPGEPSDPTAPHIARAK 126
+ +T + + L +Y RV G G S+ + +
Sbjct: 366 KDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDTE 419
Score = 31.1 bits (69), Expect = 1.2
Identities = 12/129 (9%), Positives = 29/129 (22%), Gaps = 16/129 (12%)
Query: 89 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKR 148
L+ + Y RV G P+ + + ++
Sbjct: 174 GPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAV 233
Query: 149 S----------------GLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV 192
GLF + + E +P + ++ ++
Sbjct: 234 LSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVP 293
Query: 193 NKGGPGEPS 201
+ G+
Sbjct: 294 DPATHGQYI 302
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 60.6 bits (147), Expect = 7e-11
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 214 VSPYINRDQ-LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
V P I+ Q + G F G P P W N I +++ + +
Sbjct: 95 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE- 153
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
L V + D G Y N G D+ A + V
Sbjct: 154 -LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 57.5 bits (139), Expect = 9e-10
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVF 277
R+ +S + + G + E V P P WL ++ +T IS +RF ++ ++ L++
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQIL 62
Query: 278 DSKRGDSGIYT-LAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ + D GIY + G + ++++P P K N T
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 109
Score = 31.7 bits (72), Expect = 0.48
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 1 APHI-DRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P I + + G + F G P P + W G +
Sbjct: 96 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI 139
Score = 29.4 bits (66), Expect = 2.8
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 6 RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
R + + G + + P P V W +
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 47
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 62.5 bits (152), Expect = 7e-11
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 214 VSPYINRDQ-LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
V P I+ Q + G F G P P W N I +++ + + T
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--T 248
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
+L V + D G Y N G D+ A + V
Sbjct: 249 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHH 290
Score = 62.1 bits (151), Expect = 9e-11
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
+ LS +++ G + F IGEP + IIS R + + ++L
Sbjct: 5 LQV-TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 276 VFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGPLKPSNIT 323
++++ D+GIY ++ G + T + + S
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIY---QKLTFREVVSPQE 109
Score = 60.6 bits (147), Expect = 3e-10
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDK 270
R+ +S + + G + E V P P WL ++ +T IS +RF ++ ++
Sbjct: 96 YQKLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 153
Query: 271 STKLKVFDSKRGDSGIYT-LAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
L++ + + D GIY + G + ++++P P K N T
Sbjct: 154 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 205
Score = 32.9 bits (75), Expect = 0.28
Identities = 6/47 (12%), Positives = 11/47 (23%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
R + + G + + P P V W +
Sbjct: 98 KLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 143
Score = 30.9 bits (70), Expect = 1.1
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 1 APHI-DRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P I + + G + F G P P + W G +
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI 235
Score = 28.6 bits (64), Expect = 5.6
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
+ L ++LS G + F IGEP + G +
Sbjct: 4 LLQV-TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKI 45
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 62.7 bits (152), Expect = 8e-11
Identities = 30/149 (20%), Positives = 45/149 (30%), Gaps = 7/149 (4%)
Query: 182 GNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP----YINRDQLSDIKVRAGSNFEFD 237
F V + G+ D R + V A + F
Sbjct: 85 RVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFR 144
Query: 238 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-LKVFDSKRGDSGIYTLAVKNSWG 296
G P P+ WL N + R + L + D G YT V+N +G
Sbjct: 145 CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG 204
Query: 297 TDKGTAKVTVLDIPS--PPEGPLKPSNIT 323
+ + T + VL+ P P+N T
Sbjct: 205 SIRQTYTLDVLERSPHRPILQAGLPANQT 233
Score = 50.0 bits (119), Expect = 1e-06
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 15/113 (13%)
Query: 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL-------------CNDITIISKD 261
P + ++ GS+ EF V + P +WL + K
Sbjct: 221 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKT 280
Query: 262 RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
D + L + + D+G YT NS G +A + VL P+ E
Sbjct: 281 AGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL--PAEEE 331
Score = 48.8 bits (116), Expect = 3e-06
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 9/129 (6%)
Query: 208 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIV 266
+ RA +V P Q + +G E G P+ W+ + ++ +R +
Sbjct: 1 MGRAAEV-PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG 59
Query: 267 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSS 326
+L+V ++ DSG Y+ + + +V +P G +
Sbjct: 60 P----QRLQVLNASHEDSGAYSCRQRLTQRV---LCHFSVRVTDAPSSGDDEDGEDEAED 112
Query: 327 CNLEWRAPR 335
++ AP
Sbjct: 113 TGVDTGAPY 121
Score = 30.4 bits (68), Expect = 2.0
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 3 HIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
+R + + A T++F G P P + W G
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFR 165
Score = 30.0 bits (67), Expect = 2.4
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANII-GEPVPHVDWRAGGNPL 43
P + + +G ++ G P+ W G L
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL 50
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 57.7 bits (140), Expect = 9e-11
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
L ++V G F+I + EP +W + + +I+ D K L + + +
Sbjct: 11 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQL 69
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
G +G + N K A + V ++
Sbjct: 70 GMTGEVSFQAAN----TKSAANLKVKEL 93
Score = 26.5 bits (59), Expect = 8.6
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
+ L +++ G T F+ + EP H W+ G PL
Sbjct: 10 KPLYGVEVFVGETAHFEI-ELSEPDVHGQWKLKGQPL 45
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 60.2 bits (146), Expect = 1e-10
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
+ + G F G P P W N I +++ + + L
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LT 61
Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
V + D G Y N G D+ A + V P ++ N T
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF---VQPHI-IQLKNET 105
Score = 52.9 bits (127), Expect = 4e-08
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-------RFKI 265
V P+I QL + + GEPIP W + R ++
Sbjct: 93 FVQPHII--QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 150
Query: 266 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
S+ L + D K DSG Y + G + + + +
Sbjct: 151 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 30.6 bits (69), Expect = 1.2
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 1 APHI-DRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
P I + + G + F G P P + W G +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 46
Score = 30.6 bits (69), Expect = 1.2
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
PHI + + + + GEP+P + W+ +
Sbjct: 95 QPHIIQLK--NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE 139
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 57.4 bits (139), Expect = 1e-10
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
+V G F + + +P +W N I ++ + L + + + D
Sbjct: 16 PAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTD 74
Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
Y + G +K + ++ V PS
Sbjct: 75 DSEYYVTA----GDEKCSTELFVRSGPS 98
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 57.0 bits (138), Expect = 2e-10
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
++ V G + + + + WL + + + +R +I + +++V DS
Sbjct: 9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE----EVEVQDSVP 63
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
DSG+Y + G+D V V D + P GP
Sbjct: 64 ADSGLYACVTSSPSGSDTTYFSVNVSD--ALPSGP 96
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 61.4 bits (149), Expect = 2e-10
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 9/126 (7%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
A N G S R + V+P + ++ G N +G P+P +W
Sbjct: 183 ATNSAGVRYSSPANL--YVRVQNVAPRFSI-LPMSHEIMPGGNVNITCVAVGSPMPYVKW 239
Query: 251 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
+ + +D + + + + DS YT +S G + A++TV +P
Sbjct: 240 MQGAEDLTPEDDMPV------GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLP 293
Query: 311 SPPEGP 316
Sbjct: 294 KAGTKH 299
Score = 60.2 bits (146), Expect = 4e-10
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
+ P + + D +G F G+P P W + S+ I D+ +
Sbjct: 4 EEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 273 K-LKVFDSKRG-DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP----LKPSNIT 323
L++ + D +Y +NS G AK+TVL P G + P
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV 119
Score = 57.9 bits (140), Expect = 3e-09
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 2/115 (1%)
Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 269
+ P I V G P P W + + + +
Sbjct: 103 QLPSGFPNI-DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL 161
Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAKVTVLDIPSPPEGPLKPSNIT 323
+S L++ S+ D G Y NS G A + V P + P +
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHE 216
Score = 33.3 bits (76), Expect = 0.18
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
AP ++ G + +G P+P+V W G L
Sbjct: 205 APRF-SILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDL 246
Score = 32.5 bits (74), Expect = 0.32
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P + D +G F G+P P V W G +N +
Sbjct: 6 PPRF-IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQR 51
Score = 30.6 bits (69), Expect = 1.6
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 1/59 (1%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDT 59
P+I + T G P P + W P++ + Q
Sbjct: 108 FPNI-DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA 165
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 62.2 bits (151), Expect = 2e-10
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
V P+ + S++ + EF+ V G+P+PT W+ N +I D F+IV
Sbjct: 310 LVPPWF-LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS--- 365
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
L++ + D G Y +N G + +A++ V
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 57.2 bits (138), Expect = 7e-09
Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII---SKDRFKIVNDDKST 272
Q I G VIG+P+PT W N + R ++
Sbjct: 122 LRFLS-QTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA-- 178
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPS---PPEGPLKPSNIT 323
L++ + GDSG+Y + +N T A+V +L P +PSN+
Sbjct: 179 -LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVI 232
Score = 54.8 bits (132), Expect = 4e-08
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 5/116 (4%)
Query: 208 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN 267
++ + S++ G + + V G P P+ WL + I + + +
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272
Query: 268 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ L + + DSG YT V +A++TVL PP PSN+
Sbjct: 273 GGSN--LLISNVTDDDSGTYTCVVTYKNENISASAELTVL---VPPWFLNHPSNLY 323
Score = 34.0 bits (78), Expect = 0.13
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P H ++ ++F+ + G+PVP V+W G+ +
Sbjct: 312 PPWF-LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV 353
Score = 32.9 bits (75), Expect = 0.32
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 6 RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
I G T+ +IG+P+P + W+ LN P
Sbjct: 125 LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP 166
Score = 31.0 bits (70), Expect = 1.3
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLR 46
++ G + + G P P W G + LR
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLR 265
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 62.0 bits (150), Expect = 2e-10
Identities = 9/95 (9%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
+ + ++V ++ + V + W+ ++ + F + N + + +
Sbjct: 54 EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTE 112
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
+G Y L +++ V++ +
Sbjct: 113 TQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147
Score = 60.5 bits (146), Expect = 7e-10
Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 213 KVSPYINR-DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
+IN + D ++ F F + P W + + + + +++ S
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG--LDNGYS 379
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
+ F + + G Y +N + +
Sbjct: 380 --ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
Score = 40.8 bits (95), Expect = 0.001
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 10/101 (9%)
Query: 223 LSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDD------KSTKLK 275
L + ++ G + W + + + F++ +
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293
Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
V R D+G YT + +A VT+++
Sbjct: 294 VSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATN 331
Score = 29.6 bits (66), Expect = 3.2
Identities = 4/33 (12%), Positives = 6/33 (18%)
Query: 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
D ++ F P W
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF 367
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 57.1 bits (138), Expect = 3e-10
Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 5/98 (5%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
+ + P W + ++ + +D +L + +
Sbjct: 20 KVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLE 78
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPS 320
DSG Y + + + VTV + P S
Sbjct: 79 DSGEYLCEI----DDESASFTVTVTEPPVRIIYSGPSS 112
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 56.4 bits (135), Expect = 4e-10
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 406 PFGRPDRPGQPTVTDWGK--DHVDLEWTPPKKDGGSPISQYIIEKKPK--YGPWEKACIV 461
P G P + +T+ + ++W P+ S IS+YI+ +PK G W++A +
Sbjct: 2 PLGSS-GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEA-TI 56
Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
P ++ + ++ LK G YE ++I++ + G E ++ T
Sbjct: 57 PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTT 97
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 55.9 bits (135), Expect = 4e-10
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 257
G P I ++ + G+P+P WL T
Sbjct: 1 GSSGSSGPPII-----------LQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTF 49
Query: 258 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
+D + + + L++ + + D+G YT +S G +A + V +
Sbjct: 50 PGRDPRATIQEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 33.1 bits (76), Expect = 0.048
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P I + + L+ T G+P+P + W G
Sbjct: 8 PPII-LQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTF 49
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 61.0 bits (148), Expect = 4e-10
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
P + ++DI V + ++ G P PT WL N ++++DR +I
Sbjct: 293 YAQPNWVQ-IINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG---- 347
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
L + D+G+Y +N G +A+++V+
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 56.4 bits (136), Expect = 1e-08
Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 187 FRVLAVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRAGSNFEFDINVIG 242
+ + N + P P I R V P I + G+ + + +G
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231
Query: 243 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302
P+PT W D I++ + + L++ + ++ D+G Y +NS G +
Sbjct: 232 NPVPTILWRRADGKPIARKA-RRHKSNGI--LEIPNFQQEDAGSYECVAENSRGKNVAKG 288
Query: 303 KVTVLDIPSPPEGPLKPSNITKS 325
++T + P ++I +
Sbjct: 289 QLTFY---AQPNWVQIINDIHVA 308
Score = 44.8 bits (106), Expect = 5e-05
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 4/118 (3%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
S + VR G + W+ N+ +R + + +
Sbjct: 100 YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN- 158
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI-PSPPEGPLKPSNITKSSCNL 329
L + ++ D G YT V N+ K T L + G +P + +
Sbjct: 159 -LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215
Score = 38.7 bits (90), Expect = 0.004
Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 21/128 (16%)
Query: 196 GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRA---GSNFEFDINVIGEPIPTKEWLC 252
GPG P + S + + V G P P W
Sbjct: 1 GPGSG---------------PVF-VQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL 44
Query: 253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPS 311
N + F+ D S + + + D+G Y NS+GT AK+ + +
Sbjct: 45 NGTDVDIGMDFRYSVVDGSLLINNPNKTQ-DAGTYQCIATNSFGTIVSREAKLQFAYLEN 103
Query: 312 PPEGPLKP 319
Sbjct: 104 FKTRTRST 111
Score = 34.4 bits (79), Expect = 0.11
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P+ + + DI ++ ++ ++ G P P W G+PL R
Sbjct: 295 QPNW-VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD 340
Score = 32.9 bits (75), Expect = 0.30
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDW-RAGGNPLNLRPIWEK 51
P I+ + + GTT+K + +G PVP + W RA G P+ + K
Sbjct: 204 EPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK 255
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 55.9 bits (135), Expect = 5e-10
Identities = 11/84 (13%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
+++ AG++ V + W + + S + ++ + +L V + +
Sbjct: 18 HREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQA 76
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTV 306
++G Y+ G + + ++ V
Sbjct: 77 EAGEYSCEA----GGQQLSFRLQV 96
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 59.1 bits (143), Expect = 2e-09
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
P D ++D + GS+ + G+P P WL + + S++R ++ +
Sbjct: 292 HAQPDW-LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE--- 347
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
L+ DSG+Y +N GT +A++TV
Sbjct: 348 -LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 52.9 bits (127), Expect = 1e-07
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 9/114 (7%)
Query: 212 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
++ +P I +D G + G P+P +W D + SK ++ +
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----WLSSEPL 258
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKS 325
L + + D G Y +N G D ++ + + P+ ++
Sbjct: 259 --LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH---AQPDWLDVITDTEAD 307
Score = 42.9 bits (101), Expect = 2e-04
Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 3/119 (2%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
+ ++ +K+ G F + P + WL N+ + +
Sbjct: 99 FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 158
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTA--KVTVLDIPSPPEGPLKPSNITKSSCNL 329
L + ++ D G Y+ + + K + L + + PS K +
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADT 217
Score = 36.0 bits (83), Expect = 0.034
Identities = 18/108 (16%), Positives = 27/108 (25%), Gaps = 6/108 (5%)
Query: 216 PYINRDQLSDIKVRAGSNFE---FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
P +Q + GS E P T W N + +
Sbjct: 5 PVF-EEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLDIPSPPEGPLKP 319
+ K D+G Y N+ GT A + + P
Sbjct: 64 -VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDP 110
Score = 34.1 bits (78), Expect = 0.13
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P + D + G+ L++ G+P P V W G PL +
Sbjct: 294 QPDW-LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN 339
Score = 31.0 bits (70), Expect = 1.1
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
AP I + D G + + G PVP + WR
Sbjct: 206 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT 249
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 57.1 bits (138), Expect = 2e-09
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
P I + G IG P P W+ N + + + D L+
Sbjct: 111 PVI-TQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQ 166
Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSN 321
+ +S+ D G Y +NS GT+ A T L + G +
Sbjct: 167 IENSREEDQGKYECVAENSMGTEHSKA--TNLYVKVRRVGTKHHHH 210
Score = 50.2 bits (120), Expect = 4e-07
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTK-LKVFDS 279
+ + VR G F G+P P+ W N + ++ R+ ++ L++
Sbjct: 12 KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 71
Query: 280 KRG-DSGIYTLAVKNSWGTDKG-TAKVTVLDIPSPPEGP----LKPSNIT 323
+ G D Y +N G A +T+ + P G P
Sbjct: 72 RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Score = 33.2 bits (76), Expect = 0.15
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P I R + + G F G+P P + WR G ++
Sbjct: 6 PPEI-IRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQ 51
Score = 31.3 bits (71), Expect = 0.60
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL 45
P I + G + G T+ IG P P++ W +++
Sbjct: 110 FPVI-TQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDM 153
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 54.3 bits (131), Expect = 2e-09
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
+ ++V AGS F+ + + W I + +++ + + L V +
Sbjct: 14 KPRSVEVAAGSPAVFEAETERAGVKVR-WQRGGSDISASNKYGLATEGTRHTLTVREVGP 72
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
D G Y + G+ K + V
Sbjct: 73 ADQGSYAVIA----GSSKVKFDLKV 93
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 55.0 bits (133), Expect = 2e-09
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 11/125 (8%)
Query: 383 VKAVNKIGESLPLVCQSPITAKDPFGRPDR-PGQPTVTDWGKDHVDLEWTPPKKDG--GS 439
+ N+ G + IT P P ++ + + W PP G
Sbjct: 4 GSSGNRYGPGVS---TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG- 59
Query: 440 PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
I+ Y I + + + N L++G +Y F+V A+ G G P S
Sbjct: 60 FITGYKIRHRKT-TRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPP---SN 115
Query: 500 PVTCK 504
T +
Sbjct: 116 WYTAE 120
Score = 37.3 bits (87), Expect = 0.003
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 13/105 (12%)
Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVVEKMDMETGRWVPMGDVSG 365
D+PS PP+ + + S + W P I Y + +T R M +
Sbjct: 26 DVPSAPPQN-VSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHR--KTTRRGEMETLEP 82
Query: 366 TYTRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKD 405
L +G Y+F+V A+ G S + T ++
Sbjct: 83 NNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAE---TPEN 124
Score = 36.9 bits (86), Expect = 0.004
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
+ E + L +G+QY F+V A+ G G PS+
Sbjct: 74 RGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWY 117
Score = 36.9 bits (86), Expect = 0.004
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+ E + L +G+QY F+V A+ G G PS+
Sbjct: 74 RGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWY 117
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 58.1 bits (140), Expect = 2e-09
Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 18/143 (12%)
Query: 178 DLIEGNQYEFRVLAVNKGG-------------PGEPSDPTAPHIARAKKVSPYINRDQLS 224
L + ++ + + + +K P+ +
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF--VEYL 229
Query: 225 DIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
+V N V T W ++ I ++ D L + + + D
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKD 287
Query: 284 SGIYTLAVKNSWGTDKGTAKVTV 306
+GIY + +K+ G DK K+
Sbjct: 288 AGIYEVILKDDRGKDKSRLKLVD 310
Score = 55.8 bits (134), Expect = 1e-08
Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 3/117 (2%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
++ + ++ + F+ + P W + ++ R ++ + TK+
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKV--TVLDIPSPPEGPLKPSNITKSSCNLE 330
D D GIY+ V ++ G + + + P+ KS +E
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118
Score = 51.9 bits (124), Expect = 2e-07
Identities = 12/139 (8%), Positives = 38/139 (27%), Gaps = 8/139 (5%)
Query: 186 EFRVLAVNKGGPGE-----PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV 240
+ + G + + P + +++ F +
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131
Query: 241 -IGEPIPTKEWLCNDITIISKDRFKI--VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
++ N+ I ++K+ + ++ + + D G YT +++ T
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191
Query: 298 DKGTAKVTVLDIPSPPEGP 316
+ T + +
Sbjct: 192 NHSTVVLVGDVFKKLQKEA 210
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 53.6 bits (129), Expect = 3e-09
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 203 PTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR 262
PT P P+ ++ + V G + + + + WL + + ++ +R
Sbjct: 1 PTLPEQ-----AQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNR 54
Query: 263 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
+I + +++V DS DSG+Y + G+D V V
Sbjct: 55 TRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 55.9 bits (135), Expect = 4e-09
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
K+ P I R ++K+ G +G P P+ W+ D + R ++
Sbjct: 98 KMKPKITR-PPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES---G 153
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTV 306
L++ + ++ D+G Y KNS GT K+ V
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
Score = 52.8 bits (127), Expect = 4e-08
Identities = 26/117 (22%), Positives = 36/117 (30%), Gaps = 8/117 (6%)
Query: 209 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVN 267
A +P I L + F V P P W N I I D R+ I
Sbjct: 1 AEKLPKAPVI-TTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59
Query: 268 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPSPPEGPLKPSNIT 323
+ L + + D GIY N G + + V P+ P N+
Sbjct: 60 NG--QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK---MKPKITRPPINVK 111
Score = 32.4 bits (74), Expect = 0.23
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
AP I L + F + P P + W + L
Sbjct: 7 APVI-TTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFD 52
Score = 32.4 bits (74), Expect = 0.27
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
P I R ++K+ G +G P P V W G + L
Sbjct: 100 KPKI-TRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 55.7 bits (134), Expect = 5e-09
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 5/122 (4%)
Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
V+ V + +K P+ +V N V
Sbjct: 88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL--SWEVTGECNVLLKCKVANIKK 145
Query: 246 PTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304
T W ++ I ++ + + L + + + D+GIY + +K+ G DK K+
Sbjct: 146 ETHIVWYKDEREISVDEKHDFKDGICT--LLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
Query: 305 TV 306
Sbjct: 204 VD 205
Score = 51.9 bits (124), Expect = 1e-07
Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 222 QLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFD 278
+++ F + ++ N+ I ++K+ D + ++ +
Sbjct: 8 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 67
Query: 279 SKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
+ D G YT +++ T+ T + +
Sbjct: 68 LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 105
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 52.7 bits (127), Expect = 6e-09
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVF 277
L D +V G E + V E W+ N + + +D R++ D K L
Sbjct: 14 PLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFS 72
Query: 278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
D + D G Y + + A++ V
Sbjct: 73 DVVQEDRGRYQVITNG----GQCEAELIV 97
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 57.1 bits (137), Expect = 6e-09
Identities = 38/262 (14%), Positives = 74/262 (28%), Gaps = 42/262 (16%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
SD + G + + P+ + R K + K+ L V + D
Sbjct: 104 SDTHLLQGQSLTLTLESPPGSSPSVQCR--------SPRGKNIQGGKT--LSVSQLELQD 153
Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT--------------KSSCNL 329
SG +T V + + + VL K S L
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213
Query: 330 EWRAPRDDGGTDILHYVVEK------MDMETGRWVPMGDVSGTYTRAENLIEGHDY-NFR 382
W+A R + + ++ + + + T + L + N
Sbjct: 214 WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273
Query: 383 VKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPIS 442
+ K G+ V + A T WG L + ++ + +S
Sbjct: 274 LALEAKTGKLHQEVNLVVMRA------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS 327
Query: 443 --QYIIE-KKPKYGPWEKACIV 461
+ + P+ G W+ C++
Sbjct: 328 KREKAVWVLNPEAGMWQ--CLL 347
Score = 40.2 bits (93), Expect = 0.001
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 22/116 (18%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN-----------------D 268
+ + G E + W ++ I ++ + D
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP-SNIT 323
+ L + + K DS Y V++ K ++ V + + + L ++T
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSDTHLLQGQSLT 115
Score = 28.2 bits (62), Expect = 9.3
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 14/80 (17%)
Query: 230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD--KSTKLKVFDSKRGDSGIY 287
V G P K+ N + S + K ++G++
Sbjct: 295 TQLQKNLTCEVWGPTSPKLML-----------SLKLENKEAKVSKREKAVWVLNPEAGMW 343
Query: 288 TLAVKNSWGTDKGTAKVTVL 307
+ +S G + + VL
Sbjct: 344 QCLLSDS-GQVLLESNIKVL 362
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 57.3 bits (138), Expect = 9e-09
Identities = 20/110 (18%), Positives = 28/110 (25%), Gaps = 11/110 (10%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 273
P S R G N + P WL + I N
Sbjct: 379 YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISN------ 432
Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+SG+YT NS T T+ P+ + +N
Sbjct: 433 -----ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSK 477
Score = 52.3 bits (125), Expect = 4e-07
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
P + + V F + T W N+ ++ R ++ N +++ L
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRT--LT 167
Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLDIPSPPEGPLKPSNI 322
+F+ R D+ Y +N + + + VL P P ++
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSY 215
Score = 51.5 bits (123), Expect = 6e-07
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 9/134 (6%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
A N + T + P + V + W
Sbjct: 267 AHNSDTGLNRTTVTTITVYAE---PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWW 323
Query: 251 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDI 309
+ N+ ++ R ++ ND+++ L + R D G Y ++N D + VL
Sbjct: 324 V-NNQSLPVSPRLQLSNDNRT--LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380
Query: 310 PSPPEGPLKPSNIT 323
P P + PS
Sbjct: 381 PDDP--TISPSYTY 392
Score = 51.5 bits (123), Expect = 6e-07
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 9/139 (6%)
Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
+ A N + P + + V F +
Sbjct: 440 LYTCQANNSASGHSRT---TVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNT 496
Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKV 304
W N ++ R ++ N +++ L +F+ R D+ Y ++NS ++ +
Sbjct: 497 TYL-WWVNGQSLPVSPRLQLSNGNRT--LTLFNVTRNDARAYVCGIQNSVSANRSDPVTL 553
Query: 305 TVLDIPSPPEGPLKPSNIT 323
VL P P + P + +
Sbjct: 554 DVLYGPDTP--IISPPDSS 570
Score = 46.5 bits (110), Expect = 2e-05
Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 16/133 (12%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
N SD ++ + R+G N + P W
Sbjct: 183 TQNPVS-ARRSDSVILNVLYGPDAP----TISPLNTSYRSGENLNLSCHAASNPPAQYSW 237
Query: 251 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
N S I N + +SG YT NS T T+
Sbjct: 238 FVNGTFQQSTQELFIPNITVN-----------NSGSYTCQAHNSDTGLNRTTVTTITVYA 286
Query: 311 SPPEGPLKPSNIT 323
PP+ + +N
Sbjct: 287 EPPKPFITSNNSN 299
Score = 45.3 bits (107), Expect = 5e-05
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 11/94 (11%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
P D +G+N + P P W N I +
Sbjct: 556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ-----------QHTQ 604
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
L + ++G Y V N + ++
Sbjct: 605 VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 38.0 bits (88), Expect = 0.008
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 17/107 (15%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR-- 281
+ V G ++ + + + W + ++ V + S R
Sbjct: 7 TPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66
Query: 282 --------------GDSGIYTLAVKNS-WGTDKGTAKVTVLDIPSPP 313
D+G YTL V S ++ T + V P
Sbjct: 67 IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKP 113
Score = 30.7 bits (69), Expect = 1.7
Identities = 10/44 (22%), Positives = 12/44 (27%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
P D +G L + P P WR G P
Sbjct: 558 GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ 601
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 52.0 bits (125), Expect = 1e-08
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 212 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDK 270
+K S + +V G + + + +WL N I +S ++ +
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70
Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
L + D Y V G +K + ++ V +
Sbjct: 71 KRTLTISQCSLADDAAYQCVV----GGEKCSTELFVKE 104
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 55.3 bits (133), Expect = 2e-08
Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 5/123 (4%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
+ G S + R P I + S + G + + +
Sbjct: 163 TMVNGR-ESTSTGIWLKVNRVHPEPPQIKL-EPSKLVRIRGEAAQIVCSATNAEVGFNVI 220
Query: 251 LCND---ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
L + I F+ K L + D+GIY+ N GT T V+
Sbjct: 221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
Query: 308 DIP 310
+
Sbjct: 281 ESH 283
Score = 36.8 bits (85), Expect = 0.017
Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 12/109 (11%)
Query: 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKL 274
+P I ++ V G G EW + D + + L
Sbjct: 4 APVIEPSG-PELVVEPGETVTLRCVSNGSV----EWDGPISPYWTLD-----PESPGSTL 53
Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
++ ++G Y T + V D L +T
Sbjct: 54 TTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSW--NLLAQEVT 100
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 54.0 bits (129), Expect = 2e-08
Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 10/186 (5%)
Query: 321 NITKSSCNLEWRAPRDDGGTDI-LHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDY 379
N+ +C W++ + T++ LHY + D + + S T L + +
Sbjct: 11 NVEYMNC--TWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIH 68
Query: 380 NFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS 439
++ V P + + P P T+ + ++L W +
Sbjct: 69 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LN 125
Query: 440 PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRV---IAVNKGGPGEPSK 496
+++++ + + S+P + + Y FRV G S+
Sbjct: 126 HCLEHLVQYRTDWDHSWTE-QSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 184
Query: 497 ASAPVT 502
S P+
Sbjct: 185 WSHPIH 190
Score = 31.3 bits (70), Expect = 0.58
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 546 SMVKLSYIDNV-PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWI 604
+ L + V P P + + +++ W + + V+ R W
Sbjct: 87 ATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWT 143
Query: 605 KITPD 609
+ + D
Sbjct: 144 EQSVD 148
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 56.0 bits (135), Expect = 2e-08
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
K +PY D+ ++ + G + G P PT +W+ N + S T
Sbjct: 310 KAAPYW-LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT 368
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
+ D++ +Y N G A V+VLD+
Sbjct: 369 -IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDV 404
Score = 54.1 bits (130), Expect = 7e-08
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
S V G + + G P P W + S D+ K N +K+ L++ + D
Sbjct: 230 SSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS-DKAKFENFNKA--LRITNVSEED 286
Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKS 325
SG Y N G+ + T V V + P +P N+ +
Sbjct: 287 SGEYFCLASNKMGSIRHTISVRVK---AAPYWLDEPKNLILA 325
Score = 51.0 bits (122), Expect = 6e-07
Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 8/125 (6%)
Query: 200 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI 257
P DP+ P I + D V N + G P P+ W N I
Sbjct: 4 PMDPSIQ---NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI 60
Query: 258 ISKDRFKIVNDDKSTKLKVFDSKRG--DSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPE 314
R + + + R G Y +N +GT ++ V P P+
Sbjct: 61 AKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPK 120
Query: 315 GPLKP 319
L P
Sbjct: 121 ENLDP 125
Score = 44.1 bits (104), Expect = 1e-04
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
SP ++ L + V+ G+ N G P P W+ + + I++D+ +
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD- 172
Query: 273 KLKVFDSKRGDS-GIYTLAVKNSWG-TDKGTAKVTVLDIPSPPEGPLKPSNI 322
L + D Y+ + + T + T+ + + PS +
Sbjct: 173 -LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFM 223
Score = 34.1 bits (78), Expect = 0.14
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
AP+ ++ L+ G + G P P V W G PL P
Sbjct: 312 APYW-LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP 357
Score = 31.0 bits (70), Expect = 1.1
Identities = 8/45 (17%), Positives = 14/45 (31%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL 45
P I ++ D + + + G P P W N+
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI 60
Score = 29.1 bits (65), Expect = 4.7
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANII-GEPVPHVDWRAGGNPL 43
+P + +L + + G L N G P P + W +
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP 158
Score = 27.9 bits (62), Expect = 9.5
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
+ G L + G P P + W G L
Sbjct: 231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL 263
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 54.7 bits (131), Expect = 2e-08
Identities = 32/209 (15%), Positives = 55/209 (26%), Gaps = 28/209 (13%)
Query: 310 PSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVS 364
P P P N+T S N L W G + Y V + RW + + +
Sbjct: 1 PGRPRLA-PPQNVTLLSQNFSVYLTWLPGL--GNPQDVTYFVAYQSSPTRRRWREVEECA 57
Query: 365 GT------YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDR---PGQ 415
GT + + + RV+ V+ +S P + P
Sbjct: 58 GTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKS-------PWVESEYL-DYLFEVEPAP 109
Query: 416 PTVTDWGKD---HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
P + + + + P + + K G + P
Sbjct: 110 PVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQPVQITLQ 169
Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPV 501
E + + + SK S P
Sbjct: 170 PAASEHHCLSARTIYTFSVPKYSKFSKPT 198
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 54.4 bits (130), Expect = 2e-08
Identities = 24/194 (12%), Positives = 47/194 (24%), Gaps = 17/194 (8%)
Query: 321 NITKSSCNLEWRAPRDDGGT--------DILHYVVEKMDMETGRWVPMGDVSGTYTRAEN 372
+ + SC W T D + + + ++ ++
Sbjct: 14 SRAQISC--VWSQDGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQK 71
Query: 373 LIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEW-T 431
L RV + + + R P V ++ W
Sbjct: 72 LTTVDIVTLRVLCREGVRWRVMAIQDFKPFENL---RLMAPISLQVVHVETHRCNISWEI 128
Query: 432 PPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKG 489
++ WE+A ++ + L +YEF+V
Sbjct: 129 SQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQ 188
Query: 490 GP-GEPSKASAPVT 502
G S S P+
Sbjct: 189 GEFTTWSPWSQPLA 202
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 56.2 bits (135), Expect = 2e-08
Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-E 249
+G S+ + A K P ++ + +R G F +
Sbjct: 188 VDQEGK-SVLSEKFILKVRPAFKAVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVYST 245
Query: 250 WLCNDITIISKDRFKIVNDDKSTK-----LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304
W + ++++ + L + ++ DSG++ N++G+ T +
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
Query: 305 TVLDIPSPPEGPLKPSNIT 323
V+D P+ + +
Sbjct: 306 EVVDKGFINIFPMINTTVF 324
Score = 55.1 bits (132), Expect = 4e-08
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 213 KVSPYINRD--QLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDD 269
+IN + + V G N + + P P +W+ + T K +++
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSEN 367
Query: 270 KST-----KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
+S +L + K + G YT V NS V V + PE
Sbjct: 368 ESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---TKPE 414
Score = 45.8 bits (108), Expect = 3e-05
Identities = 13/103 (12%), Positives = 21/103 (20%), Gaps = 12/103 (11%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS------------TK 273
+ N G P PT +W T + D ++ +
Sbjct: 416 LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQ 475
Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
+ S +G N G P
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518
Score = 38.1 bits (88), Expect = 0.009
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 19/118 (16%)
Query: 206 PHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI 265
P ++ + P I+ SD+ VR G G +W +
Sbjct: 27 PSVSPGEPSPPSIH-PGKSDLIVRVGDEIRLLCTDPGFV----KWT--------FEILDE 73
Query: 266 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
N++K + ++ ++G YT K+ G + + + P + L ++
Sbjct: 74 TNENKQNEWITEKAEATNTGKYTCTNKH------GLSNSIYVFVRDPAKLFLVDRSLY 125
Score = 34.6 bits (79), Expect = 0.099
Identities = 10/103 (9%), Positives = 27/103 (26%), Gaps = 5/103 (4%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
+ + ++ + P T L + + D K+ + +
Sbjct: 122 RSLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYH 180
Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP---LKPSNIT 323
+V G + K + P+ P + ++
Sbjct: 181 RLCLHCSVDQE-GKSVLSEKFILKVRPAFKAVPVVSVSKASYL 222
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 55.7 bits (134), Expect = 2e-08
Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
+P + I V+ G + V G P P W N +S R + +
Sbjct: 306 VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK-PLSGGRATVTDS---- 360
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
L + K GD G Y N G V V
Sbjct: 361 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 53.0 bits (127), Expect = 1e-07
Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 10/156 (6%)
Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRA 230
V + Y++ A N E K S + + D+ +A
Sbjct: 167 IVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKA 226
Query: 231 GSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT 288
G P+ + N + +DR N +L + D G+YT
Sbjct: 227 GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYT 286
Query: 289 LAVKNSWGTDKG-TAKVTVLDIPSPPEGPLKPSNIT 323
V N G + + K+TV+ S P+ KP +
Sbjct: 287 CEVDNGVGKPQKHSLKLTVV---SAPKYEQKPEKVI 319
Score = 51.8 bits (124), Expect = 4e-07
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 5/112 (4%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 271
P + +DQ +++ R + + + G K W + + ++ + D+
Sbjct: 4 DKYPVL-KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ L + D G Y + G +++V P K T
Sbjct: 63 S-LVFLRPQASDEGHYQCFAETPAGVA--SSRVISFRKTYLIASPAKTHEKT 111
Score = 41.0 bits (96), Expect = 0.001
Identities = 33/264 (12%), Positives = 60/264 (22%), Gaps = 72/264 (27%)
Query: 221 DQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKD-------RFKIVNDDKST 272
+ + G F+ D + P P W R D
Sbjct: 105 AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 164
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS--------PPEGPLKPSNITK 324
V D Y KN+ ++ + + P ++
Sbjct: 165 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMA 224
Query: 325 ---SSCNLE------------WRAPRDDGGTDILHYVVEKMDMETGRW--------VPMG 361
+ + ++ G D+ +++
Sbjct: 225 KAGDVTMIYCMYGSNPMGYPNYF--KN--GKDVNGNPEDRITRHNRTSGKRLLFKTTLPE 280
Query: 362 DVSGTYT-RAENL---IEGHDYNFRVKA------------VNKIGESLPLVCQSPITAKD 405
D G YT +N + H V + V K G+ + + C+
Sbjct: 281 D-EGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKV------ 333
Query: 406 PFGRPDRPGQPTVTDWGKDHVDLE 429
G P P V W + L
Sbjct: 334 -TGLP----APNVV-WSHNAKPLS 351
Score = 34.5 bits (79), Expect = 0.089
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
AP +++ I + G + + G P P+V W PL+
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS 351
Score = 33.3 bits (76), Expect = 0.20
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
+ + D+ AG P+ + ++ G +N P
Sbjct: 211 GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNP 257
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 51.7 bits (124), Expect = 2e-08
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
Query: 413 PGQPTVTDWGKDHVDLEWT-PPKKDGGSPISQYIIEKKPK----YGPWEKACIVPANITA 467
P + + L+W P + +PI + I +P ++K +V +
Sbjct: 12 PYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD-MVEGDRYW 70
Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
S+ L+ Y+ ++ N+GG E S + C+
Sbjct: 71 HSISHLQPETSYDIKMQCFNEGGESEF---SNVMICE 104
Score = 42.9 bits (101), Expect = 2e-05
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRA-PRDDGGTDILHYVV---EKMDMETGRWVPMGDVSG 365
+ P + +++ L+W P + T I + + + V G
Sbjct: 9 VAGPYI-TFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDM-VEG 66
Query: 366 TYTRA--ENLIEGHDYNFRVKAVNKIGES 392
+L Y+ +++ N+ GES
Sbjct: 67 DRYWHSISHLQPETSYDIKMQCFNEGGES 95
Score = 38.6 bits (90), Expect = 8e-04
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
EGD + L Y+ ++ N+GG E S+
Sbjct: 64 VEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVM 101
Score = 38.6 bits (90), Expect = 8e-04
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
EGD + L Y+ ++ N+GG E S+
Sbjct: 64 VEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVM 101
Score = 31.7 bits (72), Expect = 0.18
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 557 PGKPSKPEATDVDKDHIKIKWQQ-PISNGGSAIKGYEVERRERTS---GRWIKITPDPIR 612
P V++ I +KW P SN + I G+ + R S + K + R
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 613 TKT 615
Sbjct: 69 YWH 71
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 51.3 bits (123), Expect = 2e-08
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 8/99 (8%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
+ ++L W + Y + + +
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYEL----HV--LNQDEEWHQMVLEPR 63
Query: 470 --VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
+ L+ Y RV + GPG S T P
Sbjct: 64 VLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPS 102
Score = 46.3 bits (110), Expect = 1e-06
Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 3/83 (3%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
S LK L W R L Y + ++ + V
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ---MVLEPRVL 65
Query: 370 AENLIEGHDYNFRVKAVNKIGES 392
L Y RV+ + +G
Sbjct: 66 LTKLQPDTTYIVRVRTLTPLGPG 88
Score = 32.1 bits (73), Expect = 0.13
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 85 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP----TAP 120
P+ + L Y RV + GPG S T+P
Sbjct: 61 EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP 100
Score = 32.1 bits (73), Expect = 0.13
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP----TAP 206
P+ + L Y RV + GPG S T+P
Sbjct: 61 EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP 100
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 53.2 bits (127), Expect = 3e-08
Identities = 39/206 (18%), Positives = 59/206 (28%), Gaps = 24/206 (11%)
Query: 312 PPEGPLKPSNITKSSCNL--EWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT- 368
PP P + + WR D G + P G +
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSC 62
Query: 369 --RAENLIEGHDYNFRVKAVNKIG--ESLPLVCQSPITAKDPFGRPDRPGQPTVT----D 420
+ Y V A N++G S L + PD P + V +
Sbjct: 63 HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQ-----PDPPLELAVEVKQPE 117
Query: 421 WGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSVPDLKEG 476
K ++ ++W+PP G Y I KP+ WE T + L G
Sbjct: 118 DRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEI--HFAGQQTEFKILSLHPG 175
Query: 477 EEYEFRVIAVNKGGPGEPSKASAPVT 502
++Y +V G S S
Sbjct: 176 QKYLVQVRCKPDHGYW--SAWSPATF 199
Score = 38.9 bits (90), Expect = 0.002
Identities = 32/208 (15%), Positives = 50/208 (24%), Gaps = 58/208 (27%)
Query: 413 PGQPTVTDW---GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
PG+P + K+ W P DGG P + Y + + C S
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGT-DGGLP-TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 470 ----VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEY 525
Y V A N+ G + VT
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTY---------------------- 99
Query: 526 NPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPIS--- 582
+V+ + + +PE K ++ IKW P
Sbjct: 100 ---------------------IVQPDPPLELAVEVKQPEDR---KPYLWIKWSPPTLIDL 135
Query: 583 NGGSAIKGYEVERRERTSGRWIKITPDP 610
G YE+ + + W
Sbjct: 136 KTGWFTLLYEIRLKPEKAAEWEIHFAGQ 163
Score = 34.7 bits (79), Expect = 0.052
Identities = 27/177 (15%), Positives = 43/177 (24%), Gaps = 23/177 (12%)
Query: 49 WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG---KVLDLIEGNQYEFRVLA 105
W T+G P L + +C P Y V A
Sbjct: 24 WR--PGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNA 81
Query: 106 VNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQL------------KRSGLFD 153
N+ G + + L + + + ++G F
Sbjct: 82 TNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFT 141
Query: 154 ---QFHLCPIWEK--CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP-GEPSDPT 204
+ L P G + K+L L G +Y +V G S T
Sbjct: 142 LLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPAT 198
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 54.1 bits (130), Expect = 5e-08
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
++ + + + G + +V+ PT W +I K + + +
Sbjct: 98 FQKLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 156
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV-LDIPSPPEGPLKPSNIT 323
L++ K+ D G Y + + + V +++P + N T
Sbjct: 157 -LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNAT 207
Score = 51.8 bits (124), Expect = 2e-07
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 214 VSPYI-NRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS--KDRFKIVNDDK 270
V P + R + + G + + G P PT W + I + +D K + D
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252
Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
S++L + + + D Y +N G + + V
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 47.6 bits (113), Expect = 6e-06
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEP-IPTKEWL-CNDITIISKD-RFKIV-NDDKSTKLKVF 277
S ++ G + F V G+ W N + R +V NDD S+ L ++
Sbjct: 8 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 278 DSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGPLKPSNIT 323
++ D+GIY V GT T V + P+
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKI---FQKLMFKNAPTPQE 111
Score = 30.6 bits (69), Expect = 1.2
Identities = 5/47 (10%), Positives = 15/47 (31%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
+ + + G +++ P + W+ G + L+
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK 145
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 53.3 bits (127), Expect = 5e-08
Identities = 26/198 (13%), Positives = 48/198 (24%), Gaps = 18/198 (9%)
Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNL--EWRAPRDDGGTDILHYVVEKMDMETGRWV 358
V + P + W G + + T W
Sbjct: 18 LQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWT 77
Query: 359 PMGDVSGTYTRA---------ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGR 409
Y A Y ++ + + + P
Sbjct: 78 QEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIAL 137
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPK---KDGGSPISQYIIEKKPKYGP-WEKACIVPANI 465
++T + + W P+ G + +Y ++ K W+ +
Sbjct: 138 NWTLLNVSLTG-IHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILT-- 194
Query: 466 TATSVPDLKEGEEYEFRV 483
T+ V LK +EYE RV
Sbjct: 195 TSVPVYSLKVDKEYEVRV 212
Score = 31.3 bits (70), Expect = 0.71
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 323 TKSSCNLEWRAPRD---DGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDY 379
+ + W APR+ G +L Y ++ ++ +W M + T +L +Y
Sbjct: 149 IHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEY 208
Query: 380 NFRVKA 385
RV++
Sbjct: 209 EVRVRS 214
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 50.8 bits (121), Expect = 5e-08
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPI---PTKEWLCN---------DITIISKDRFKIVNDD 269
+ V+ G + F V E + PT +W + K+ F+ +
Sbjct: 13 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72
Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
+ ++++ +K +G Y V D + + V +
Sbjct: 73 YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 53.8 bits (129), Expect = 5e-08
Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 5/123 (4%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
A+ G S + + P + +++ G + + + +
Sbjct: 163 ALMGGR-KVMSISIRLKVQKVIPGPPAL-TLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220
Query: 251 LCND---ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
L ++ + I + F K L + +G Y+ N G + V+
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Query: 308 DIP 310
+
Sbjct: 281 ESA 283
Score = 39.2 bits (91), Expect = 0.002
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 10/99 (10%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 273
P I ++ V+ G+ G EW + + +D S+
Sbjct: 3 SIPVIEPSV-PELVVKPGATVTLRCVGNGSV----EWDGPPSPHWT-----LYSDGSSSI 52
Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSP 312
L ++ ++G Y + V D P
Sbjct: 53 LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP 91
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 52.8 bits (126), Expect = 6e-08
Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 8/128 (6%)
Query: 378 DYNFRVKAVNKIGESLPLVCQSPITAKDPFG--RPDRPGQPTVTD-WGKDHVDLEWTPPK 434
Y ++ + +G SP T P +P P + + W P
Sbjct: 81 GYTMWIRINHSLGSL-----DSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPV 135
Query: 435 KDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEP 494
+ Q K W+ + A + S+P Y +V G G
Sbjct: 136 FPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYW 195
Query: 495 SKASAPVT 502
S S P
Sbjct: 196 SNWSNPAY 203
Score = 29.7 bits (66), Expect = 2.4
Identities = 13/149 (8%), Positives = 37/149 (24%), Gaps = 20/149 (13%)
Query: 75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE-------------PSDPTAPH 121
+ C + + + Y + + G + P P++
Sbjct: 58 PKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVK 117
Query: 122 IARAKKGKCYHL---VGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLD 178
+ ++++ Q++ + W+ + + +
Sbjct: 118 AEITINIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQ----WKMYEVYDAKSKSVSLPV 173
Query: 179 LIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
Y +V G G S+ + P
Sbjct: 174 PDLCAVYAVQVRCKRLDGLGYWSNWSNPA 202
Score = 28.5 bits (63), Expect = 6.0
Identities = 8/53 (15%), Positives = 15/53 (28%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 121
G W+ + + + Y +V G G S+ + P
Sbjct: 150 SGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPA 202
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 53.7 bits (128), Expect = 6e-08
Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 29/228 (12%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTK---EWLCNDITIISKDRFKIVNDD 269
++ ++ Q + AG F V G EP+P+ W +D ++
Sbjct: 1 MAFTVSI-QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------EN 49
Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITK---SS 326
+ L V D+ ++G Y + V+++ ++V +++ +P + +
Sbjct: 50 NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTD 109
Query: 327 CNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVK 384
L G T +Y + W DV T + + + VK
Sbjct: 110 VELHATVKFSGGKTPADNYEL------HYSWSKGEDVIDTTQDITIQEFTADKNGVYTVK 163
Query: 385 AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTP 432
+ +S + D+ + T + + L +
Sbjct: 164 VWGESEDS---AASASTKIMLATMNVDQDVVESKTVALGNEISLNYVV 208
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 52.2 bits (125), Expect = 6e-08
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-----SKDRFKIVN 267
K +P I G + +G P P W + + S RF I+N
Sbjct: 90 KAAPDITG-HKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN 148
Query: 268 DDKSTKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
+ T+L + + D G Y NS G+ + + V
Sbjct: 149 KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 49.5 bits (118), Expect = 4e-07
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 12/113 (10%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDK 270
+ P I I + N+ W N + + + + +
Sbjct: 1 QNEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NAS 54
Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ + ++ + DSG Y V + K A + V + P+ +
Sbjct: 55 NMEYRINKPRAEDSGEYH-CVYHFVSAPKANATIEVK---AAPDITGHKRSEN 103
Score = 29.0 bits (65), Expect = 3.7
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
AP I H + G +G P P WR N +
Sbjct: 92 APDI-TGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEI 137
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 52.2 bits (125), Expect = 7e-08
Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVS---PYINRDQLSDIKVRAGSNFEFDINVIGEPIPT 247
+ P I ++ + P Q D+ G N + +G P+P
Sbjct: 85 VSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD 144
Query: 248 KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
W + S LK+F+ + D GIY +N G DK A++ V
Sbjct: 145 IRWRKVLEPMPSTAEISTSG----AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 45.3 bits (107), Expect = 2e-05
Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 10/119 (8%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKS 271
+ P+ ++ +++V+ G + + WL N+ + + +
Sbjct: 7 LDPFP-PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI-------PSPPEGPLKPSNIT 323
L + + + D G Y+ V + T +K L P P + ++ ++
Sbjct: 66 GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Score = 30.2 bits (68), Expect = 1.3
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
D+ G + + +G PVP + WR P+
Sbjct: 118 VQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPM 154
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 49.2 bits (118), Expect = 7e-08
Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
P+ P L + T SS L W A D+ G + Y V V+GT
Sbjct: 4 PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGT------ALATTVTGTTAT 54
Query: 370 AENLIEGHDYNFRVKAVNKIG 390
L Y F VKA + G
Sbjct: 55 ISGLAADTSYTFTVKAKDAAG 75
Score = 49.2 bits (118), Expect = 8e-08
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
P P T + L WT + G ++ Y + Y A V T +
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV-----YNGTALATTVTG--TTAT 54
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+ L Y F V A + G S AS V+
Sbjct: 55 ISGLAADTSYTFTVKAKDAA--GNVSAASNAVS 85
Score = 32.6 bits (75), Expect = 0.057
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVER 595
P P+ +T I + W N G + GY+V
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDVYN 40
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 52.1 bits (125), Expect = 8e-08
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 222 QLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 280
SD+ V G + G P PT W + + KD + K L + ++
Sbjct: 117 NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK---LMITYTR 173
Query: 281 RGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGP 316
+ D+G Y N G + A++TVL+ PS +
Sbjct: 174 KSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210
Score = 46.7 bits (111), Expect = 6e-06
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 9/121 (7%)
Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-----KDRFK 264
R + P I + SD+ V G + G P PT EW + + +
Sbjct: 4 RQEDFPPRI-VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 265 IVNDD--KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNI 322
++ ++ R D G+Y +N G + ++ + PS++
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV-SHDASLEVAILRDDFRQNPSDV 121
Query: 323 T 323
Sbjct: 122 M 122
Score = 29.4 bits (66), Expect = 2.4
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL 45
P I H D+ +S G + G P P ++W GG +
Sbjct: 9 PPRI-VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVET 52
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 51.7 bits (124), Expect = 9e-08
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDK 270
++ + + + G + +V+ PT W + + RF ++++
Sbjct: 98 FQKLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-- 154
Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
L++ K+ D G Y + + + V+
Sbjct: 155 -NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 50.6 bits (121), Expect = 2e-07
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIISKDRFKIV---NDDKSTKLKVF 277
S ++ G + F V G+ W + +S ++ +I NDD S+ L ++
Sbjct: 8 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 278 DSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPSPPEGPLKPSNIT 323
++ D+GIY V GT + T V + P+
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIF---QKLMFKNAPTPQE 111
Score = 33.6 bits (77), Expect = 0.12
Identities = 5/47 (10%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
+ + G +++ P + W+ G + L+
Sbjct: 100 KLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK 145
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 51.1 bits (122), Expect = 1e-07
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 18/119 (15%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS------------KDRFKIVNDDKS 271
I N F + P+ W + K+R + S
Sbjct: 3 QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLE 330
L +++ D Y + N T K + VL++ S P + SN T +C +
Sbjct: 62 --LTIYNLTSSDEDEYEMESPNITDTMKFF--LYVLEMVSKPMIYWECSNAT-LTCEVL 115
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 48.9 bits (117), Expect = 1e-07
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVS 364
++ P+ P G + + ++ NL W A Y V++ G + + +++
Sbjct: 1 MVSAPAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNIT 55
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
T + G Y + V AV+ E+L
Sbjct: 56 STNYTDTGVATGTKYYYVVSAVSNGVETLN 85
Score = 46.2 bits (110), Expect = 1e-06
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 413 PGQPT----VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP-KYGPWEKACIVPANITA 467
P PT V D + +L W + Y +++ GP+ + NIT+
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTT---IATNITS 56
Query: 468 TSVPD--LKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
T+ D + G +Y + V AV+ G S +
Sbjct: 57 TNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 30.1 bits (68), Expect = 0.63
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
+ G +Y + V AV+ G S
Sbjct: 63 GVATGTKYYYVVSAVSNGVETLNSAEAI 90
Score = 30.1 bits (68), Expect = 0.63
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
+ G +Y + V AV+ G S
Sbjct: 63 GVATGTKYYYVVSAVSNGVETLNSAEAI 90
Score = 27.8 bits (62), Expect = 3.3
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 556 VPGKPSKPEAT-DVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTK 614
P P+ A D + + W N Y V+R ++ G + I + T
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTW-----NAAPGANSYNVKRSTKSGGPYTTIATNI--TS 56
Query: 615 TS 616
T+
Sbjct: 57 TN 58
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 48.5 bits (116), Expect = 2e-07
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 426 VDLEWT-PPKKDGGSPISQYIIEKKPKY----GPWEKACIVPANITATSVPDLKEGEEYE 480
+ L+WT P + +PI + I +P +++ +V + + L+ Y+
Sbjct: 21 IMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRD-VVEGSKQWHMIGHLQPETSYD 79
Query: 481 FRVIAVNKGGPGEPSKASAPVTCK 504
++ N+GG E S + C+
Sbjct: 80 IKMQCFNEGGESEF---SNVMICE 100
Score = 37.7 bits (88), Expect = 0.001
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 311 SPPEGPLKPSN-----ITKSSCNLEWRA-PRDDGGTDILHYVV--EKMDMETGRWVPMGD 362
S P P ++ + L+W P + T I + + D +
Sbjct: 2 STPITG--PHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDV 59
Query: 363 VSGTYTRA--ENLIEGHDYNFRVKAVNKIGES 392
V G+ +L Y+ +++ N+ GES
Sbjct: 60 VEGSKQWHMIGHLQPETSYDIKMQCFNEGGES 91
Score = 36.6 bits (85), Expect = 0.003
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
EG + L Y+ ++ N+GG E S+
Sbjct: 60 VEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNV 96
Score = 36.6 bits (85), Expect = 0.003
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 203
EG + L Y+ ++ N+GG E S+
Sbjct: 60 VEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNV 96
Score = 29.6 bits (67), Expect = 0.81
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 556 VP-GKPSKPEATDVDKDHIKIKWQQ-PISNGGSAIKGYEVERRERTS---GRWIKITPDP 610
P P V I +KW P SN + I+G+ + R S + + +
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 611 IRT 613
+
Sbjct: 63 SKQ 65
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 51.0 bits (122), Expect = 2e-07
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 222 QLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLK 275
+ D +V G + G P PT W+ + + + + L
Sbjct: 114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLDIPSPPEGP 316
+ + + D G Y +N GT + AK+ V +
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 49.5 bits (118), Expect = 7e-07
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKS 271
P I + +D+ V+ + V G+P PT EW + + + + R + +
Sbjct: 10 PRI-IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ K D G Y KN G + ++ + ++P +
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAV-SRHASLQIAVLRDDFRVEPKDTR 119
Score = 29.4 bits (66), Expect = 2.9
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
+P I H D+ + + + G+P P ++W G P++
Sbjct: 9 SPRI-IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 3e-07
Identities = 77/430 (17%), Positives = 133/430 (30%), Gaps = 159/430 (36%)
Query: 40 GNPLN----LRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK--GKVLDL 93
GN + LR +++ T V DLI+ + + +T D K + L++
Sbjct: 164 GNTDDYFEELRDLYQ--------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 94 IE---------GNQY-----------------EFRVLAVNKG-GPGEPSD---------- 116
+E Y + V A G PGE
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 117 --PTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRS-------GL-----FDQFHLCP-IW 161
TA IA +S + ++++ G+ + L P I
Sbjct: 276 GLVTAVAIAETDSW-----------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 162 EKCAQ-TEG---------DTPKGKVLDLIEG-NQY---EFRV-LA-VNKGGP------GE 199
E + EG + + +V D + N + +V ++ VN G G
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNLVVSGP 382
Query: 200 PSDPTAPHIA-RAKKVSPYINRDQ----LSDIKVRAGSNFEFDINVIGEP------IPTK 248
P ++ R K DQ S+ K++ + F + P +P
Sbjct: 383 PQSLYGLNLTLRKAKAPS--GLDQSRIPFSERKLKFSNRF----LPVASPFHSHLLVPAS 436
Query: 249 EWLCNDITIISKDRFKIVNDDKSTKLKVFDSK-----RGDSG---------IYTLAVKNS 294
+ + D + K+ + K ++ V+D+ R SG I L VK
Sbjct: 437 DLINKD---LVKNNVSF--NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-- 489
Query: 295 WGTDKGTA-KVT-VLDIPSPPEGPLKPSNITK-SSCNLEWRAPRDDGGTDILHYVVEKMD 351
W + T K T +LD GP S + + N + GT + V+
Sbjct: 490 W--ETTTQFKATHILDF-----GPGGASGLGVLTHRNKD--------GTGV--RVIVAGT 532
Query: 352 METGRWVPMG 361
++ G
Sbjct: 533 LDINPDDDYG 542
Score = 36.6 bits (84), Expect = 0.028
Identities = 35/213 (16%), Positives = 63/213 (29%), Gaps = 72/213 (33%)
Query: 338 GGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVC 397
G DI H + K+ + T + + LI+ +Y + A
Sbjct: 97 EGNDI-HALAAKLL---------QENDTTLVKTKELIK--NY---ITARIMAKRPFDKKS 141
Query: 398 QSPI--TAKDP-------FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK 448
S + + FG GQ D+ ++ DL Y
Sbjct: 142 NSALFRAVGEGNAQLVAIFG-----GQGNTDDYFEELRDL---------------YQT-- 179
Query: 449 KPKYGPWEKACIVPANIT-ATSVPDLKEGEEYEFRVIAVNK--GGPGE-PSK---ASAPV 501
Y I + T + + + E+ + + + + P P K S P+
Sbjct: 180 ---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 502 TCKPRFVAPVID-----QYALQDMTAQ--EYNP 527
+C P+I Y + TA+ + P
Sbjct: 237 SC------PLIGVIQLAHYVV---TAKLLGFTP 260
Score = 33.1 bits (75), Expect = 0.32
Identities = 53/282 (18%), Positives = 98/282 (34%), Gaps = 84/282 (29%)
Query: 160 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVS---P 216
+W + DT +LD++ N L ++ GG + K++
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVN---LTIHFGGE------------KGKRIRENYS 1689
Query: 217 YINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW-----LCND-------ITIISKDRFK 264
+ + + D K++ F+ +IN E + + L + +T++ K F+
Sbjct: 1690 AMIFETIVDGKLKTEKIFK-EIN---EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 265 IVNDDKSTKLKVFDSKR-GDS-GIYT-LAVKNSWGTDKGTAKVTVLDIPS---------- 311
+ KS L D+ G S G Y LA + V+ I S
Sbjct: 1746 DL---KSKGLIPADATFAGHSLGEYAALA-----------SLADVMSIESLVEVVFYRGM 1791
Query: 312 -----PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV-------P 359
P L SN + N A + L YVVE++ TG V
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAA--SFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 360 MGD---VSGTYTRA-ENLIEGHDYNFRVKAVN--KIGESLPL 395
+G RA + + ++ +++ ++ ++ +SL L
Sbjct: 1850 -NQQYVAAGD-LRALDTVTNVLNFI-KLQKIDIIELQKSLSL 1888
Score = 31.9 bits (72), Expect = 0.81
Identities = 44/299 (14%), Positives = 83/299 (27%), Gaps = 125/299 (41%)
Query: 46 RPIWEKCAQTEGDTPKGKVLDLIEGNHP----------------------IWEKCAQTEG 83
+ +W + DT +LD++ N P I+E +G
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGEKGKRIRENYSAMIFETIV--DG 1699
Query: 84 DTPKGKVLDLI--EGNQYEFRVLAVNKGGPGEPSDPTA---PHIARAKKGKCYHLVGTLL 138
K+ I Y FR T P + L+
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFR-------SEKGLLSATQFTQPALT---------LMEK-- 1741
Query: 139 KDSIYEQLKRSGLFDQ---F--H-------LCPIWEKCAQTE----GDTPK-----GKVL 177
+ +E LK GL F H L + + + G +
Sbjct: 1742 --AAFEDLKSKGLIPADATFAGHSLGEYAAL------ASLADVMSIESLVEVVFYRGMTM 1793
Query: 178 DLI----EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGS- 232
+ E + + ++A+N PG +V+ +++ L + R G
Sbjct: 1794 QVAVPRDELGRSNYGMIAIN---PG--------------RVAASFSQEALQYVVERVGKR 1836
Query: 233 --------NFEFDIN------VI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV 276
N+ N V G+ + + + N + I + I+ +L+
Sbjct: 1837 TGWLVEIVNY----NVENQQYVAAGD-LRALDTVTNVLNFIKLQKIDII------ELQK 1884
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 48.9 bits (116), Expect = 3e-07
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 13/104 (12%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR-------------FKIVND 268
+ G + E +G P+P +W +
Sbjct: 27 APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQ 86
Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSP 312
++ + + D+G Y N + T V + +
Sbjct: 87 HAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130
Score = 30.8 bits (69), Expect = 0.60
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
+ + G +++ +G PVP + W G N
Sbjct: 26 QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIC 66
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 48.3 bits (115), Expect = 3e-07
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 12/113 (10%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCND--ITIISKDRFKI---- 265
P I+ G + + P P + W + + + R+ +
Sbjct: 12 NGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 69
Query: 266 VNDDKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTVL--DIPSPPEG 315
+ + L + + R D IY NS+G+D ++ ++ P G
Sbjct: 70 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 52.0 bits (125), Expect = 4e-07
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW-LCND--ITIISKDRFKIVNDDKST 272
I + + V G +F G+P P W ++ S R + D
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD---G 441
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
L+V ++ D+G Y N+ G D A + V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 50.3 bits (120), Expect = 4e-07
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 15/131 (11%)
Query: 195 GGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND 254
G ++ + R I V AG + G P +W +
Sbjct: 2 GSSHHHHHHSSGLVPRG----SKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMN 56
Query: 255 ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPP 313
I + + +++L D+G Y V N++ + +++ V DIP
Sbjct: 57 KEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESF 107
Query: 314 EGPLKPSNITK 324
+ + + +K
Sbjct: 108 QRSVDGVSESK 118
Score = 49.9 bits (119), Expect = 5e-07
Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 10/126 (7%)
Query: 199 EPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII 258
+ + + + I + + K+ GS +G PIP +W N++ +
Sbjct: 102 DIPESFQRSVDGVSESKLQICV-EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT 160
Query: 259 SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLK 318
+ + V G Y V N + ++D + P
Sbjct: 161 HETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDN 211
Query: 319 PSNITK 324
T
Sbjct: 212 KEQTTD 217
Score = 30.2 bits (68), Expect = 1.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
KL G+TL +G P+PH W PL
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 159
Score = 29.1 bits (65), Expect = 3.8
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 1/43 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
I + + AG +K G P W +
Sbjct: 18 GSKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI 59
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 51.6 bits (123), Expect = 4e-07
Identities = 41/302 (13%), Positives = 82/302 (27%), Gaps = 62/302 (20%)
Query: 232 SNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA 290
+ + P W ND + + + L + + + DSG Y
Sbjct: 41 PQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCT 99
Query: 291 VKNSWGTDKGTAKVTVLDIPSP-PEGPLKPSNITKSS-----CNLEWRAPRDD------- 337
+N+ DK + ++ V + P +T S+ C RD
Sbjct: 100 TRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQW 159
Query: 338 --GGTDILHYVVEKMDMETGRWVPMGDV----SGTYT-RAENLIEGHDYNFRVKAVNKI- 389
+ + + + + + DV +G Y EG YN +I
Sbjct: 160 YKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIK 219
Query: 390 ---------------------GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDL 428
G L + C+ G P T+ W + +
Sbjct: 220 KKKEETIPVIISPLKTISASLGSRLTIPCK----VFLGTGTP----LTTMLWWTANDTHI 271
Query: 429 EWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK 488
E P G +++ ++ + + + DL +++ + N
Sbjct: 272 ESAYP----GGRVTEGPRQEYSENNENYIEVPL--IFDPVTREDL--HMDFK--CVVHNT 321
Query: 489 GG 490
Sbjct: 322 LS 323
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 49.6 bits (118), Expect = 4e-07
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
SD + G + + P+ + R K + K+ L V + D
Sbjct: 105 SDTHLLQGQSLTLTLESPPGSSPSVQCR--------SPRGKNIQGGKT--LSVSQLELQD 154
Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIP 310
SG +T V + + + VL
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 40.0 bits (93), Expect = 8e-04
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 22/116 (18%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN-----------------D 268
+ + G E + W ++ I ++ + D
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP-SNIT 323
+ L + + K DS Y V++ K ++ V + + + L ++T
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSDTHLLQGQSLT 116
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 50.1 bits (119), Expect = 5e-07
Identities = 29/208 (13%), Positives = 53/208 (25%), Gaps = 32/208 (15%)
Query: 312 PPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
P + ++ S N L W + + Y +E WV
Sbjct: 1 PEDPSDLLQHVKFQSSNFENILTWDSGPEGTPD--TVYSIEYKTYGERDWVAKKGCQRIT 58
Query: 368 TRAENLIE-----GHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWG 422
++ NL Y RV AV+ G S + + + P VT
Sbjct: 59 RKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHT-----TLKPPDVTCIS 113
Query: 423 KD-HVDLEWTPP----KKDGGSPISQYIIEKKPKY-------GPWEKACIVPANITATSV 470
K + + P + G ++ I Y ++ +
Sbjct: 114 KVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQM--HLGGKQREYEF 171
Query: 471 PDLKEGEEYEFRVIAVNKGGP--GEPSK 496
L E+ ++ + P
Sbjct: 172 FGLTPDTEFLGTIMILVPTWAKESAPYM 199
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 47.9 bits (114), Expect = 5e-07
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 402 TAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYGPWEKACI 460
T K P P +P V + V L W K + S ++ Y + + + +
Sbjct: 13 TKKTP---PSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQ--V 67
Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
+ N T+ + L E+Y V A GG G S
Sbjct: 68 LNTNKTSAELV-LPIKEDYIIEVKATTDGGDGTSS 101
Score = 38.3 bits (89), Expect = 0.001
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 90 VLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
L L Y V A GG G S+
Sbjct: 76 ELVLPIKEDYIIEVKATTDGGDGTSSEQ 103
Score = 38.3 bits (89), Expect = 0.001
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDP 203
L L Y V A GG G S+
Sbjct: 76 ELVLPIKEDYIIEVKATTDGGDGTSSEQ 103
Score = 33.7 bits (77), Expect = 0.040
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 304 VTVLDIPSPPEGPLKPSNI----TKSSCNLEWRA-PRDDGGTDILHYVVEKMDMETGRWV 358
V V +PP P P N+ T + L W + +++ Y V + V
Sbjct: 9 VNVTTKKTPPSQP--PGNVVWNATDTKVLLNWEQVKAMENESEVTGYKV-FYRTSSQNNV 65
Query: 359 PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGE 391
+ + + T L DY VKA G+
Sbjct: 66 QVLNTNKTSAE-LVLPIKEDYIIEVKATTDGGD 97
Score = 28.3 bits (63), Expect = 2.9
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 556 VPGKPSKPEATDVDKDHIKIKWQQ-PISNGGSAIKGYEVERRERTSGRWIKIT 607
P +P + + + W+Q S + GY+V R + +
Sbjct: 17 PPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLN 69
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 47.8 bits (114), Expect = 6e-07
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYII--EKKPKYGPWEKACIVPANITATSV 470
P + ++W P++ G I Y + P A+ T++
Sbjct: 22 PRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVADSQITTI 80
Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
+L + Y +V+A G G S+ +
Sbjct: 81 GNLVPQKTYSVKVLAFTSIGDGPL---SSDIQVI 111
Score = 44.3 bits (105), Expect = 8e-06
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVV---EKMDMETGRWVPMGDVS 364
PS ++ ++ ++ ++W+ P + G I Y V W+
Sbjct: 16 QAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVAD 74
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 406
T NL+ Y+ +V A IG+ S + T
Sbjct: 75 SQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVI---TQTGS 116
Score = 37.4 bits (87), Expect = 0.002
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
+ + D+ + +L+ Y +VLA G G S
Sbjct: 59 DPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107
Score = 36.6 bits (85), Expect = 0.004
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 203
D+ + +L+ Y +VLA G G S
Sbjct: 70 HNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 49.2 bits (117), Expect = 9e-07
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 9/108 (8%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK--------LK 275
++++ + + G P EW + + +
Sbjct: 12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGIT 71
Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
R D+G YT V G G KV L + PP P +
Sbjct: 72 FKSVTREDTGTYTCMVSEEGGNSYGEVKVK-LIVLVPPSKPTVNIPSS 118
Score = 46.1 bits (109), Expect = 8e-06
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 9/101 (8%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKI------- 265
V P G+ G P W + I + + +
Sbjct: 106 VPPSKPT-VNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 266 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
V + + +L D+G Y+ +N +GT + V +
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 46.8 bits (111), Expect = 1e-06
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 426 VDLEWTPPKKDGGSPISQYII-----EKKPKYGPWEKACIVPANITATSVPDLKEGEEYE 480
V + WT ++ I Y + W+ + + +LK+G YE
Sbjct: 32 VQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89
Query: 481 FRVIAVNKGGPGEPSKASAPVTCK 504
+V G S T +
Sbjct: 90 IKVRPYFNEFQGMD---SESKTVR 110
Score = 35.6 bits (82), Expect = 0.009
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 92 DLIEGNQYEFRVLAVNKGGPGEPSDP 117
+L +G YE +V G S+
Sbjct: 81 NLKKGVTYEIKVRPYFNEFQGMDSES 106
Score = 35.6 bits (82), Expect = 0.009
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDP 203
+L +G YE +V G S+
Sbjct: 81 NLKKGVTYEIKVRPYFNEFQGMDSES 106
Score = 32.9 bits (75), Expect = 0.070
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 317 LKPSNITKSSCNLEWRAPRDDGGTD--ILHYVVEKMDMETGRWVPMGDVSGTYTRA--EN 372
P +T ++ + W R + Y T W + T A N
Sbjct: 22 HNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81
Query: 373 LIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFG 408
L +G Y +V+ + S ++ + G
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSSG 120
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 46.5 bits (110), Expect = 1e-06
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTK---EWLCNDIT---------IISKDRFKIVNDD 269
+ D +V G + F V G + +W + D + +
Sbjct: 10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69
Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
+L + D++ +G Y V D +TV +
Sbjct: 70 YLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 49.9 bits (118), Expect = 1e-06
Identities = 22/214 (10%), Positives = 55/214 (25%), Gaps = 20/214 (9%)
Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
GT+ V + + E + S + W D + Y +
Sbjct: 108 GTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTD--APEDTQYFLYYRYGSWTEECQ 165
Query: 360 MGDVSGTYTRAE--------NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD 411
+ V + + + + A + +
Sbjct: 166 EYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSS---KHSAIRPFDQLFALHAIDQIN 222
Query: 412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVP 471
P T + ++W P Y ++ + + + +T +
Sbjct: 223 PPLNVTAE-IEGTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ---IEKLMTNAFIS 278
Query: 472 DLKEGEEYEFRV---IAVNKGGPGEPSKASAPVT 502
+ + +Y+ +V ++ G S+ S P+
Sbjct: 279 IIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPIY 312
Score = 41.0 bits (95), Expect = 7e-04
Identities = 41/314 (13%), Positives = 78/314 (24%), Gaps = 79/314 (25%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI-LHYVVEKMDMETGRWVPMGDVSGTYT 368
PP + L+W+ D ++ L Y V+ + +
Sbjct: 12 LLPPVN-FTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYET---RITESK 67
Query: 369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD----------RPGQPTV 418
L G ++ V+ + + SL + P G P +
Sbjct: 68 AVTILHMG--FSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNY 125
Query: 419 TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC---IVPANITATS------ 469
+ V L T +QY + +YG W + C + +
Sbjct: 126 SRLRSYQVSLHCTWMVGTDAPEDTQYFL--YYRYGSWTEECQEYSMDTLGRNIACWFPRT 183
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFI 529
K + V +K P
Sbjct: 184 FILSKGRDWLAVLVNGSSKHSAIRPF---------------------------------- 209
Query: 530 TLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIK 589
D L ++ +++ NV + + I+W++P+S
Sbjct: 210 ---------DQLFALHAIDQINPPLNVTAEIEG--------TRMSIQWEKPVSAFPIHCF 252
Query: 590 GYEVERRERTSGRW 603
YEV+ +G
Sbjct: 253 DYEVKIHNTRNGYL 266
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 45.9 bits (109), Expect = 1e-06
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
+ V G V +P P W+ + + + S L + +
Sbjct: 16 EPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLILPEIGP 66
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
D G Y+ +S + + V++
Sbjct: 67 QDQGTYSCVATHSSHGPQESRAVSI 91
Score = 33.5 bits (77), Expect = 0.027
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
+ ++ G T+ + +P P + W G PL L P
Sbjct: 10 EVQL-VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP 55
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 49.6 bits (118), Expect = 2e-06
Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 8/143 (5%)
Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVS---PYINRDQLSDIKVRAGSNFEFDINVIG 242
++ ++ T + + +S P +++ G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238
Query: 243 EPIPTKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 300
P P+ W K + + S L + D+ DSG Y V NS G +
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298
Query: 301 TAKVTVLDIPSPPEGPLKPSNIT 323
+TV +P + P T
Sbjct: 299 ETVLTVT---APLSAKIDPPTQT 318
Score = 48.0 bits (114), Expect = 5e-06
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
+ V G F G PI T W+ + I +
Sbjct: 305 TAPLSA-KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---------- 353
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
L++ K+ D G+Y V+N + + +A++ +
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 41.1 bits (96), Expect = 7e-04
Identities = 32/272 (11%), Positives = 73/272 (26%), Gaps = 50/272 (18%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKS 271
+ P ++ + I + E + G P+P W+ +D T + + ++ D
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60
Query: 272 ---TKLKVFDSKR-GDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGPLKPSNITKSS 326
+ D ++ + +Y +N +G+ V + K I +S
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120
Query: 327 CNLEWRAPRD------------DGGTDILHYVVEKMDMETGRW-------VPMGDVSGTY 367
++ P D + V D +Y
Sbjct: 121 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY 180
Query: 368 T-RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 426
R ++ R+ ++ + + + + P +P +
Sbjct: 181 QCRTKH---------RLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHT-I 230
Query: 427 DLE------------WTPPKKDGGSPISQYII 446
L W K G+ Q ++
Sbjct: 231 SLLCPAQGFPAPSFRWY--KFIEGTTRKQAVV 260
Score = 30.7 bits (69), Expect = 1.5
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
+ + G F G P+ V W G +
Sbjct: 307 PLSA-KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG 349
Score = 29.9 bits (67), Expect = 2.3
Identities = 8/43 (18%), Positives = 11/43 (25%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
AP ++L T+ G P P W
Sbjct: 211 APRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253
Score = 28.4 bits (63), Expect = 7.2
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDW-RAGGNPLNLRP 47
P + I S T + + G P+P + W R+ G + P
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP 50
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 47.1 bits (112), Expect = 3e-06
Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK--LKVFDSKR 281
+ V G + + +V G P +W+ + + + D+ I ++ L + +R
Sbjct: 10 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 69
Query: 282 GDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGPLKPSNIT 323
D+G Y V++ T+ +TV P ++P ++
Sbjct: 70 SDAGRYWCQVEDGGETEISQPVWLTVE---GVPFFTVEPKDLA 109
Score = 39.8 bits (93), Expect = 8e-04
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 12/96 (12%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 271
+ P+ + D+ V + F+ +G P P W I V
Sbjct: 96 EGVPFF-TVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV----- 149
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTV 306
+ + S +++ N G TA V +
Sbjct: 150 ----LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 48.2 bits (114), Expect = 4e-06
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
A N G E S + ++ + +V G+P P+ W
Sbjct: 232 AENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWC-----------IPFSVDGQPAPSLRW 280
Query: 251 LCNDITIISKDRFKIVNDDKSTK-------LKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 303
L N + + + L++ ++G YTL N +G +
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 340
Query: 304 VTVLDIP 310
+D P
Sbjct: 341 AAFMDNP 347
Score = 46.3 bits (109), Expect = 2e-05
Identities = 20/174 (11%), Positives = 43/174 (24%), Gaps = 22/174 (12%)
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 279
+ Q+ + V G + V G + W+ ++ + K +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVT 220
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSC--------NLEW 331
+ T +N G + + +V V S + +L W
Sbjct: 221 SDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRW 280
Query: 332 RAPRDDGGTDILHYVVEKMDMETGRWVPMGDV----------SGTYT-RAENLI 374
+ + ++ + +G YT A N
Sbjct: 281 L--FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 46.9 bits (111), Expect = 4e-06
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 13/110 (11%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS---- 279
SD++V + + G P EW + + + F S
Sbjct: 9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGIT 68
Query: 280 ----KRGDSGIYTLAVKNSWGTD--KGTAKVTVLDIPSPPEGPLKPSNIT 323
R D+G YT V G + + + +TVL PP P +
Sbjct: 69 FSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL---VPPSKPTISVPSS 115
Score = 42.6 bits (100), Expect = 1e-04
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKI------- 265
V P V G+ + G P W + I++++ D K
Sbjct: 103 VPPSK-PTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161
Query: 266 -VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
D KS L DSG Y +N +GT + +
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 46.4 bits (110), Expect = 5e-06
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 19/109 (17%)
Query: 231 GSNFEFDINVI--GEPIPTKEWLCND------------ITIISKDRFKIVNDDKSTKLKV 276
G + DI + I +W T KD +K+ K+ LK+
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL---FKNGTLKI 70
Query: 277 FDSKRGDSGIYTLAVKNSWGTDKGTAK--VTVLDIPSPPEGPLKPSNIT 323
K D IY +++ ++ G + + + + S P+ N T
Sbjct: 71 KHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTT 119
Score = 29.9 bits (67), Expect = 1.9
Identities = 8/76 (10%), Positives = 14/76 (18%), Gaps = 11/76 (14%)
Query: 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA 290
N V+ P + + R S S +
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTS-----------LSAKFKCT 163
Query: 291 VKNSWGTDKGTAKVTV 306
N + V+
Sbjct: 164 AGNKVSKESSVEPVSC 179
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 47.0 bits (111), Expect = 9e-06
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 11/122 (9%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
+ SD + + ++ +N VR G N VIG + EW
Sbjct: 160 TTIGDREVD-SDAYYVYRLQVSSINVSVNA---VQTVVRQGENITLMCIVIGNEVVNFEW 215
Query: 251 LCND------ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304
+ ++ + +S L + ++ DSG YT V S + +
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSI-LHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
Query: 305 TV 306
+
Sbjct: 275 NI 276
Score = 36.2 bits (83), Expect = 0.021
Identities = 35/244 (14%), Positives = 65/244 (26%), Gaps = 37/244 (15%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
++ + S F G W ++ K + S+ L + + D
Sbjct: 8 PELVLNVSSTFVL--TCSGSAPVV--WE-RMSQEPPQEMAKAQDGTFSSVLTLTNLTGLD 62
Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKS-----------SC----- 327
+G Y +S G + K + +P P G L C
Sbjct: 63 TGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDP 122
Query: 328 --NLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT-RAENLIEGHDYNFRVK 384
+ G L + +G + +Y + + +
Sbjct: 123 QLVVTLHE---KKGDVALPVPYDHQRGFSGIF-----EDRSYICKTTI--GDREVDSDAY 172
Query: 385 AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQY 444
V ++ S V + A R G + V+ EWT P+K+ G +
Sbjct: 173 YVYRLQVSSINV---SVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229
Query: 445 IIEK 448
Sbjct: 230 TDFL 233
Score = 30.4 bits (68), Expect = 1.6
Identities = 21/125 (16%), Positives = 29/125 (23%), Gaps = 29/125 (23%)
Query: 276 VFDSKRG-----DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKS----- 325
+D +RG + Y A S +
Sbjct: 140 PYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENI 199
Query: 326 --SC--------NLEWRAPRDDGGTDILHYVVEKMDMETGRW-------VPMGDVSGTYT 368
C N EW PR + G + +DM + D SGTYT
Sbjct: 200 TLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELED-SGTYT 258
Query: 369 -RAEN 372
Sbjct: 259 CNVTE 263
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 44.0 bits (104), Expect = 1e-05
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 426 VDLEWTPP-KKDGGSPISQYIIEKKPKYGPWEKA--CIVPANITATSVPDLKEGEEYEFR 482
VD+ W P K + Y I + K V N + + R
Sbjct: 36 VDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVR 95
Query: 483 VIAVNKGGPGEPSKASAPVTC 503
+ AV +GG G S PV
Sbjct: 96 IAAVTRGGVGPF---SDPVKI 113
Score = 39.4 bits (92), Expect = 4e-04
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 8/101 (7%)
Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVV---EKMDMETGRWVPMGD 362
PS P N + + ++ W P +++ Y + + + +
Sbjct: 16 GAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVG 75
Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQSP 400
+G+ R + R+ AV + G S P+ P
Sbjct: 76 QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIP 116
Score = 39.0 bits (91), Expect = 7e-04
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 63 KVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
++ + + E + + + ++ + R+ AV +GG G SDP
Sbjct: 56 RISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPV 111
Score = 37.9 bits (88), Expect = 0.002
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+ + + ++ + R+ AV +GG G SDP
Sbjct: 73 EVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPV 111
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 43.9 bits (104), Expect = 1e-05
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI--VPANITATSV 470
P + V + + W + + Y I + E A V + + +
Sbjct: 22 PTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANRVQVTSQEYSARL 78
Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
+L +Y V A N G G P S +
Sbjct: 79 ENLLPDTQYFIEVGACNSAGCGPP---SDMIEAF 109
Score = 36.9 bits (86), Expect = 0.003
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
Q ++ +L+ QY V A N G G PSD
Sbjct: 68 QVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMI 106
Score = 36.9 bits (86), Expect = 0.003
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
Q ++ +L+ QY V A N G G PSD
Sbjct: 68 QVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMI 106
Score = 34.6 bits (80), Expect = 0.021
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 14/106 (13%)
Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVSG 365
D PS P + ++ S ++ W + + Y + + V+
Sbjct: 16 DAPSEAPTE-VGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANRVQVTS 71
Query: 366 TYTRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 406
A ENL+ Y V A N G S + T K
Sbjct: 72 QEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAF---TKKAS 114
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 43.5 bits (103), Expect = 1e-05
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 18/123 (14%)
Query: 390 GESLPLVCQSPITAKDPFGRPDR-PGQPTVTDWGKDHVDLEWTPPKKDG--GSPISQYII 446
G S + A PD P T+ + + W PKK+ G I Y I
Sbjct: 1 GSSGSSGISTEEAA------PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNG-VIRGYQI 53
Query: 447 -----EKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPV 501
+ ++ +LK+ +Y V A N+ G G S+ +
Sbjct: 54 GYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS---SSEI 110
Query: 502 TCK 504
Sbjct: 111 NAT 113
Score = 36.2 bits (84), Expect = 0.006
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
+ GD+ + +L + QY V A N+ G G S
Sbjct: 72 KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 110
Score = 36.2 bits (84), Expect = 0.006
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+ GD+ + +L + QY V A N+ G G S
Sbjct: 72 KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 110
Score = 36.2 bits (84), Expect = 0.007
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 15/110 (13%)
Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVV---EKMDMETGRWVPMG- 361
P PP + +T S + W+AP ++ I Y + E G++ +
Sbjct: 13 AAPDGPPMD-VTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEM 71
Query: 362 DVSGTYTRAE--NLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 406
+G NL + Y V+A N+ G S + T +
Sbjct: 72 KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINAT---TLESG 118
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 43.5 bits (103), Expect = 2e-05
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 426 VDLEWTPPKKDG--GSPISQYIIEKKPKYGPWEKACI---VPANITATSVPDLKEGEEYE 480
V + W PP D G I+QY + + G + + ++ + L++ EY
Sbjct: 35 VRVSWVPPPADSRNG-VITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYR 93
Query: 481 FRVIAVNKGGPGEPSKASAPVTCK 504
V A GPG S+PV +
Sbjct: 94 VWVRAHTDVGPGPE---SSPVLVR 114
Score = 39.3 bits (92), Expect = 6e-04
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 13/112 (11%)
Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAPRDDGGT-DILHYVV--EKMDMETGRWVPMGDV 363
PS PP+ + ++ ++ + W P D I Y V E +D E + +
Sbjct: 16 STPSAPPQK-VMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGI 74
Query: 364 SGTYTRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRP 410
S ++ L + +Y V+A +G S P++ + T +D P
Sbjct: 75 SREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVR---TDEDVPSGP 123
Score = 35.8 bits (83), Expect = 0.010
Identities = 10/50 (20%), Positives = 16/50 (32%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
+G + ++ L + +Y V A GPG S P
Sbjct: 62 DGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPV 111
Score = 35.4 bits (82), Expect = 0.012
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+ ++ L + +Y V A GPG S P
Sbjct: 74 ISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPV 111
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 44.5 bits (105), Expect = 2e-05
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 26/121 (21%)
Query: 225 DIKVRAGSNFEFDINV-IGEPIPTKEWLCN-DITIIS--------------KDRFKIVND 268
++ GSN I WL + I+ KDR +
Sbjct: 8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKT 67
Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCN 328
+ + L++++ + D G Y + + + + V ++ S P I N
Sbjct: 68 NGA--LRIYNVSKEDRGDYYMRMLHETEDQW-KITMEVYEMVSKP-------MIYWECSN 117
Query: 329 L 329
Sbjct: 118 A 118
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 42.3 bits (100), Expect = 2e-05
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
+ + K+ GS +G PIP +W N++ + + V
Sbjct: 9 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETKKLYMVPYVDL 59
Query: 282 GDSGIYTLAVKNSWGT-DKGTAKVTVLDIPS 311
G Y V N + D ++ + ++ +
Sbjct: 60 EHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 90
Score = 28.1 bits (63), Expect = 2.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
KL G+TL +G P+PH W PL
Sbjct: 12 SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 44
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 42.1 bits (99), Expect = 3e-05
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 15/108 (13%)
Query: 200 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITII 258
+ P+ P + ++ VR G++ F P T W +
Sbjct: 3 LAAPSKP---------IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 53
Query: 259 SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
R N L + + + D+G Y N + D+GTA + V
Sbjct: 54 P-SRAMDFNGI----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 42.8 bits (100), Expect = 3e-05
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 10/97 (10%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLC----------NDITIISKDRFKIVNDDKSTK 273
I++ G + E ++ + K + +
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
L + R D G+YT A + T K + V V + P
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 45.5 bits (108), Expect = 4e-05
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDS 279
+D+ V G E + + W+ + T+++ R +++D T L +
Sbjct: 349 ADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSD--GT-LNFTNV 404
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
D+G+YT V NS G +A + V
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 42.3 bits (100), Expect = 5e-05
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 426 VDLEWTPPKKD---GGSPISQYIIEKKPKYGPWEKA-CIVPANITATSVPDLKEGEEYEF 481
+ + W PP G I+ Y I + + +V + + L G EY F
Sbjct: 35 IMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNF 92
Query: 482 RVIAVNKGGPGEPSKASAPVTCK 504
RV A+ G G + ++ +
Sbjct: 93 RVAALTINGTGPA---TDWLSAE 112
Score = 41.2 bits (97), Expect = 1e-04
Identities = 29/121 (23%), Positives = 40/121 (33%), Gaps = 15/121 (12%)
Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAPRDD---GGTDILHYVVEKMDMETGRWVPMGDV 363
D+PS P+ L S + W+ P G I Y + V V
Sbjct: 16 DVPSAAPQN-LSLEVRNSKSIMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLV 72
Query: 364 SGTYTRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTV 418
SGT E L G +YNFRV A+ G + L + T + P
Sbjct: 73 SGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAE---TFESDLDETRVPEVSGP 129
Query: 419 T 419
+
Sbjct: 130 S 130
Score = 35.4 bits (82), Expect = 0.015
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
G + L G +Y FRV A+ G G +D
Sbjct: 72 VSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWL 109
Score = 35.4 bits (82), Expect = 0.015
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
G + L G +Y FRV A+ G G +D
Sbjct: 72 VSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWL 109
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 41.7 bits (98), Expect = 6e-05
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 9/110 (8%)
Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-----RFK 264
R + P I SD+ V G + G P PT EW + +
Sbjct: 4 RQEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 265 IVNDDKSTKLKVFDSK--RGDSGIYTLAVKNSWGTDKG-TAKVTVLDIPS 311
++ L++ + R D G+Y +N G A + V
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112
Score = 31.3 bits (71), Expect = 0.32
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP 47
P I H D+ +S G + G P P ++W GG +
Sbjct: 9 PPRI-VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 43.5 bits (102), Expect = 7e-05
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
Q+++ V+ + +WL N ++ +R + ++ L++ KR
Sbjct: 116 QVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKR 172
Query: 282 GDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPE 314
D+G Y + N + + K+ ++ P
Sbjct: 173 EDAGEYQCEISNPVSVRRSNSIKLDII---FDPH 203
Score = 35.8 bits (82), Expect = 0.020
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 17/118 (14%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-------- 273
+ +V +N ++ + + W + T I K+ + V +
Sbjct: 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64
Query: 274 --------LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
L D G+YTL + + + A V + L+ +N T
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTD-ENYRRTQATVRFHVHQPVTQPFLQVTNTT 121
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 43.1 bits (101), Expect = 7e-05
Identities = 14/98 (14%), Positives = 20/98 (20%), Gaps = 4/98 (4%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND----ITIISKDRFKIVNDD 269
V P + S V P P +WL + + D
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
+ + T KN G L
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYL 199
Score = 33.5 bits (76), Expect = 0.14
Identities = 14/104 (13%), Positives = 25/104 (24%), Gaps = 18/104 (17%)
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 279
+ + +V G D+ I P F I + L V +
Sbjct: 30 KLGPGEEQVLIGR-MHHDVIFIEWPFRG--------------FFDIHRSANTFFLVVTAA 74
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
G Y +K ++V+ P +
Sbjct: 75 NISHDGNYLCRMKLGETEVTKQEHLSVV---KPLTLSVHSERSQ 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 44.4 bits (105), Expect = 8e-05
Identities = 10/95 (10%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
+ S + G + + + ++ ++S+ V+ L +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD-LFFKKVQV 310
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
D G+YT + + ++ V +
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHD 345
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 41.4 bits (97), Expect = 8e-05
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 18/109 (16%)
Query: 221 DQLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIIS--------------KDRFKI 265
L + V +GSN +I+ + E W I K R ++
Sbjct: 9 GHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRL 68
Query: 266 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKVTVLDIPSPP 313
D +S L + ++ D+ Y + V G + K+ VLD P
Sbjct: 69 --DPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 43.4 bits (101), Expect = 9e-05
Identities = 12/116 (10%), Positives = 27/116 (23%), Gaps = 21/116 (18%)
Query: 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI----------------- 257
S ++ ++V G++ W
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 258 ----ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
S + + + L + +K D+G + G T+L +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
Score = 31.4 bits (70), Expect = 0.66
Identities = 21/139 (15%), Positives = 32/139 (23%), Gaps = 40/139 (28%)
Query: 224 SDIKVRAGSNFEFD---INVIGEPIPTKEWLCNDITIIS--------------------- 259
++++V AG E P WL S
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 260 ---------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS-----WGTDKGTAKVT 305
R + N T L++ D G Y V +G D + +
Sbjct: 70 SYKESFGDFLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
Query: 306 VLD-IPSPPEGPLKPSNIT 323
V PS +
Sbjct: 129 VTGHTPSNNVHVSTAEVVQ 147
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 40.8 bits (96), Expect = 1e-04
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDG--GSPISQYIIEKKPKYGPWEKACIVPANITATSV 470
P VT +L W PP G I Y + + E T ++
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQ--NITTDTRFTL 68
Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
LK Y+ +V A G G S + +
Sbjct: 69 TGLKPDTTYDIKVRAWTSKGSGPL---SPSIQSR 99
Score = 38.1 bits (89), Expect = 0.001
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAPRDDG--GTDILHYVVEKMDMETGRWVPMGDVS 364
PS P+ L + +T S+ L W P G I+ Y V D+ + + + +
Sbjct: 6 SGPSGFPQN-LHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQEL-QNITT 62
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQ 398
T L Y+ +V+A G S + +
Sbjct: 63 DTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSR 99
Score = 34.6 bits (80), Expect = 0.016
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
Q + + L Y+ +V A G G S
Sbjct: 58 QNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSI 96
Score = 34.6 bits (80), Expect = 0.016
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
Q + + L Y+ +V A G G S
Sbjct: 58 QNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSI 96
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 41.2 bits (96), Expect = 1e-04
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 12/102 (11%)
Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKSTK 273
P I Q GS+ F + T W ++ + + +
Sbjct: 11 PQITV-QPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 274 --------LKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTV 306
L++ + + G Y + N +G+ A +T+
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 40.8 bits (95), Expect = 1e-04
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
+ NI+ +S L W+ D+ + Y + + VS
Sbjct: 8 AIQVFD-VTAVNISATSLTLIWKVS-DNESSSNYTYKIHVAGETDSSNLN---VSEPRAV 62
Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFG 408
L YN V V E P Q T P G
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGTPGFLQV-HTPPVPSG 100
Score = 37.7 bits (87), Expect = 0.002
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 5/90 (5%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
+ T + + L W + S + Y I + + +
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDSSN----LNVSEPRAV 62
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
+P L+ Y V V G P
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGTPGFLQV 92
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 43.6 bits (102), Expect = 1e-04
Identities = 44/297 (14%), Positives = 73/297 (24%), Gaps = 74/297 (24%)
Query: 242 GEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299
E T W +D + ++ +I + L +K DSG Y V+NS +
Sbjct: 32 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEK--LWFVPAKVEDSGHYYCVVRNSSYCLR 89
Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKS--------SC--------------NLEWRAPRDD 337
++ + K C L+W
Sbjct: 90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP 149
Query: 338 GGTDILHYVVEKMDMETGRWVPMGDVSGTYT-RAENLIEGHDYN------FRVKAVNK-- 388
D +H+ K + V G YT A G Y F NK
Sbjct: 150 LLLDNIHFSGVKDRLIVMN-VAEKH-RGNYTCHASYTYLGKQYPITRVIEFITLEENKPT 207
Query: 389 ---------------IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPP 433
+G + L+C G+ W + ++ P
Sbjct: 208 RPVIVSPANETMEVDLGSQIQLICNV-------TGQL----SDIAY-WKWNGSVIDEDDP 255
Query: 434 KKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG 490
+ + + I NI+ ++ F A N G
Sbjct: 256 ------VLGEDYYSVENPANKRRSTLITVLNISEIESRFY----KHPFTCFAKNTHG 302
Score = 43.2 bits (101), Expect = 1e-04
Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 9/119 (7%)
Query: 218 INRDQLSDIKVRAGSNFEF------DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
N + K+ + +P +W + ++ + D+
Sbjct: 105 YNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR- 163
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLE 330
L V + G YT ++ + + I P +P ++ ++ +E
Sbjct: 164 --LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETME 220
Score = 42.4 bits (99), Expect = 3e-04
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 13/112 (11%)
Query: 208 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN 267
+ K P I ++V GS + NV G+ W N I D +
Sbjct: 201 LEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGED 260
Query: 268 ------------DDKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTV 306
T L + + + +T KN+ G D ++
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 29.7 bits (66), Expect = 2.9
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
P I +++ G+ ++ N+ G+ W+ G+ ++
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVID 251
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 43.0 bits (101), Expect = 1e-04
Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 15/125 (12%)
Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDIT 256
SDP I R + Q+S G + + + +
Sbjct: 70 SGRSDPIQLEIHRGWLLL------QVSSRVFTEGEPLALRCHAWKDKLVYNVLYY----- 118
Query: 257 IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
++ ++ L + + +G Y + VTV ++ P
Sbjct: 119 ---RNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLN 175
Query: 317 LKPSN 321
++
Sbjct: 176 ASVTS 180
Score = 28.3 bits (63), Expect = 7.8
Identities = 11/97 (11%), Positives = 25/97 (25%), Gaps = 13/97 (13%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
+ V V+ P + +W N + ++ +
Sbjct: 9 PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP----------SYRITSASVN 58
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP 319
DSG Y S +D ++ + + +
Sbjct: 59 DSGEYRCQRGLSGRSD--PIQLEIHRGWLLLQVSSRV 93
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 40.7 bits (95), Expect = 2e-04
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 15/103 (14%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----------RFKIVNDDKST 272
L D++V G + F +++ T W N + S + R++I
Sbjct: 15 LEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQH 72
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
+L + K DSG V S + +A +T+ + P G
Sbjct: 73 RLILHAVKHQDSGAL---VGFSCPGVQDSAALTIQESSGPSSG 112
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 40.5 bits (95), Expect = 2e-04
Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 16/90 (17%)
Query: 426 VDLEWTPPKKD---GGSPISQYII--------EKKPKYGPWEKACIVPANITATSVPDLK 474
++ W P G + Y I K+ + +K + T +P L+
Sbjct: 31 AEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLE 88
Query: 475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
Y V VN G G S
Sbjct: 89 PFSHYTLNVRVVNGKGEGPA---SPDRVFN 115
Score = 36.6 bits (85), Expect = 0.004
Identities = 12/50 (24%), Positives = 16/50 (32%)
Query: 69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
I +K +G G + L + Y V VN G G S
Sbjct: 63 RNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDR 112
Score = 36.2 bits (84), Expect = 0.007
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
+G G + L + Y V VN G G S
Sbjct: 75 FQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDR 112
Score = 32.4 bits (74), Expect = 0.14
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 18/113 (15%)
Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVV---EKMDMETGRWVPMGD 362
D+P P ++ + + + + W + Y + + +
Sbjct: 12 DLPMVAPGN-VRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEK 70
Query: 363 ----VSGTYTRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 406
G+ T L Y V+ VN GE S V T +
Sbjct: 71 KILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFN---TPEGS 120
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 42.1 bits (98), Expect = 2e-04
Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 13/133 (9%)
Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP--IPTK 248
A + S + + ++ I++ G + E
Sbjct: 83 AKINDESYQ-SIMYIVVVVGYRIYDVVLS--PSHGIELSVGEKLVLNCTARTELNVGIDF 139
Query: 249 EWLCN-----DITIISKDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKNSWGTDKG 300
W ++++D + L + R D G+YT A + T K
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 199
Query: 301 TAKVTVLDIPSPP 313
+ V V + P
Sbjct: 200 STFVRVHEDPIEG 212
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 41.7 bits (97), Expect = 2e-04
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 3/97 (3%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
S + G + + G P W + ++ K+ N+ ++ L + G+
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGN 65
Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPS 320
Y + +V + P PE L
Sbjct: 66 EHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP 102
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 42.0 bits (98), Expect = 3e-04
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 9/125 (7%)
Query: 192 VNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EW 250
+ G SD + A K P + + ++ G F + W
Sbjct: 165 AQRDGTWLHSDKFTLKVREAIKAIPVV-SVPETSHLLKKGDTFTVVCTIKDVSTSVNSMW 223
Query: 251 LCNDITIISKDRFKIVNDDKSTK-------LKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 303
L + + K + + L + ++ DSG++ N++G+ T
Sbjct: 224 LKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTT 283
Query: 304 VTVLD 308
+ V++
Sbjct: 284 LKVVE 288
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 41.0 bits (96), Expect = 4e-04
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 271
+ PY + D V A + F G P P WL + + + +
Sbjct: 104 EGLPYFLE-EPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-------HG 155
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKVTVLDIPSPPE 314
+ + + ++ N+ G T TA +TVL P +
Sbjct: 156 PQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVL----PQQ 195
Score = 37.6 bits (87), Expect = 0.006
Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 14/113 (12%)
Query: 222 QLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKI---------VNDDKS 271
+I G + P WL + + D + +
Sbjct: 8 NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVV 67
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLDIPSPPEGPLKPSNIT 323
++L++ + D+G Y V T V + P +P + T
Sbjct: 68 SQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE---GLPYFLEEPEDRT 117
Score = 29.1 bits (65), Expect = 2.9
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRP 47
P+ D ++A T G P P + W PL P
Sbjct: 106 LPYF-LEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 41.8 bits (97), Expect = 5e-04
Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 16/115 (13%)
Query: 221 DQLSDIKVRAGSNF-----------EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 269
D + I+V +F+ + T W ++ +
Sbjct: 12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71
Query: 270 -----KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP 319
+ L + D+G YT ++N+ K + V+ S P+K
Sbjct: 72 NRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL 126
Score = 35.6 bits (81), Expect = 0.043
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 10/95 (10%)
Query: 235 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT----LA 290
D PT W I + + + L + ++G YT
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNFNNVIP----EGMNLSFLIALISNNGNYTCVVTYP 199
Query: 291 VKNSWGTDKGTAKVTVLDIP--SPPEGPLKPSNIT 323
T V V+ P + P P++
Sbjct: 200 ENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHV 234
Score = 31.4 bits (70), Expect = 0.88
Identities = 10/100 (10%), Positives = 22/100 (22%), Gaps = 15/100 (15%)
Query: 222 QLSDIKVRAGSNFEFDINVI----GEPIPTKEWLCNDITIISKDRFKIV----------N 267
+ G V + W + + +
Sbjct: 232 DHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291
Query: 268 DDKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTV 306
+ ++ L + D Y +++ G AKV
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 40.4 bits (94), Expect = 5e-04
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-------EWLCNDITIISKDRFKI 265
P + + S + G P T + + S+ RF +
Sbjct: 81 HGPPRV-KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139
Query: 266 VNDDKSTKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
+ ++L + + + D G Y +S G+D+ + V
Sbjct: 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 41.7 bits (98), Expect = 6e-04
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
Query: 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDK 270
+P+I D D+ + G E P+ + +WL + T++S R ++ND
Sbjct: 352 APFI-MDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLND-- 406
Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
L D+G+YT V N G +A + V +
Sbjct: 407 -GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS--TAGTHHH 449
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 38.4 bits (89), Expect = 8e-04
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 6/101 (5%)
Query: 409 RPDRPGQPTVT--DWGKDHVDLEWTPP--KKDGGSPISQYIIEKKPKYGPWEKACIVPAN 464
+PD P +++ W P D S ++ + +P + + +N
Sbjct: 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILD-QWQHVELSN 65
Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
TA ++ D G+EY +V A + G S S P
Sbjct: 66 GTAHTITDAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHATP 105
Score = 34.6 bits (79), Expect = 0.019
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 307 LDI--PSPPEGP-LKPSNITKSSCNLEWRAPR--DDGGTDILHYVVEKMDMETGRWVPMG 361
L P PPE +P + W+ P D + L + + + +W +
Sbjct: 3 LGSVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVE 62
Query: 362 DVSGTYTRAENLIEGHDYNFRVKAVNK 388
+GT + G +Y +V A +
Sbjct: 63 LSNGTAHTITDAYAGKEYIIQVAAKDN 89
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 39.4 bits (91), Expect = 8e-04
Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 15/149 (10%)
Query: 174 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN 233
G + ++E + + G + A P+ + D V AG
Sbjct: 1 GSGMKETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTS-----DETVVAGGT 55
Query: 234 FEFDINVIGEPIPTKEWLCNDITII--------SKDRFKIVNDDKST-KLKVFDSKRGDS 284
V + +W + +R ++V + + + D
Sbjct: 56 VVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADE 115
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
G YT + + VTVL IP P
Sbjct: 116 GEYT-CSIFTMPVRTAKSLVTVLGIPQKP 143
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 40.9 bits (94), Expect = 8e-04
Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 7/128 (5%)
Query: 377 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDW-GKDHVDLEWTPPKK 435
V AV+K+ +PD P + V++ W P
Sbjct: 184 LPIEVMVDAVHKLKYEQYTSSFFI----RDIIKPDPPKNLQLKPLKNSRQVEVSWEYPD- 238
Query: 436 DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
+P S + + + K T + + + V A ++ S
Sbjct: 239 TWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVICRKNASISVRAQDRYYSSSWS 298
Query: 496 KASAPVTC 503
+ ++ V C
Sbjct: 299 EWAS-VPC 305
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 40.2 bits (93), Expect = 9e-04
Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 409 RPDRPGQPTVTDW-GKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYGPWEKACIVPANIT 466
+P+ P +V G + + + + + + + + + + + ++
Sbjct: 112 KPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTK 171
Query: 467 ATSVP-DLKEGEEYEFRVIA-VNKGGPGEPSKASAPVT 502
T + L+ YE +V + + G S+ S
Sbjct: 172 LTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYY 209
Score = 34.0 bits (77), Expect = 0.094
Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 6/106 (5%)
Query: 286 IYTLAVKNSWGTDKGTAK-VTVLDI--PSPPEGPLKPSNITKSSCNLEWRAP-RDDGGTD 341
I + G T K + + I P P + + +
Sbjct: 86 IGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVK 145
Query: 342 ILHYVVEKMDMETGRWVPMGDVSGTYTR--AENLIEGHDYNFRVKA 385
+L + V + ++S T L Y +V++
Sbjct: 146 VLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKVRS 191
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 39.9 bits (92), Expect = 0.001
Identities = 13/59 (22%), Positives = 18/59 (30%)
Query: 243 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 301
P W ND I + K + D+ S+ SG Y + S D
Sbjct: 138 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 28.3 bits (62), Expect = 5.3
Identities = 12/95 (12%), Positives = 21/95 (22%), Gaps = 13/95 (13%)
Query: 242 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-- 299
W + I K K + + + G+Y +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDK-------KKWNLGSNAKDPRGMYQCKGSQNKSKPLQV 78
Query: 300 ----GTAKVTVLDIPSPPEGPLKPSNITKSSCNLE 330
G+A D + + S N E
Sbjct: 79 YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEE 113
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 40.1 bits (93), Expect = 0.001
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 224 SDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
D G++F+ G EW + + + V ++
Sbjct: 129 VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--ISVKNASSE 186
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
SG Y+ V+N G+D+ ++ V+ PS
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLDVVP-PS 214
Score = 39.3 bits (91), Expect = 0.002
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 260 KDRFKIVNDDKS---TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
K R ++D + V + + D G Y VK + G +TVL PS
Sbjct: 69 KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCF 128
Query: 317 LKPS 320
+ S
Sbjct: 129 VDGS 132
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 40.0 bits (93), Expect = 0.001
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK--- 270
+PY +Q + S E G P W +D ++S + +
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKL 173
Query: 271 ---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP--SPPE 314
++ L++ + I+ + + TA++ + ++P PP
Sbjct: 174 FNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPN 219
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 38.2 bits (88), Expect = 0.001
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 24/123 (19%)
Query: 196 GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI---PTKEWL- 251
G +PT + + + V G + V G+ + PT +W
Sbjct: 4 GSSGAEEPTGVFLKKPD------------SVSVETGKDAVVVAKVNGKELPDKPTIKWFK 51
Query: 252 --CNDITIISKDRFKIVND-DKSTK-----LKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 303
++ S RF + ++ L + GD G Y L VK D
Sbjct: 52 GKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFN 111
Query: 304 VTV 306
+ V
Sbjct: 112 IDV 114
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 39.4 bits (91), Expect = 0.002
Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 4/106 (3%)
Query: 222 QLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 280
+ ++ + ++ + W N+ +I K ++ L + + +
Sbjct: 134 ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-KYSQSGQN--LIIHNPE 190
Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSS 326
DSG Y V K V+ I + +
Sbjct: 191 LEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP 236
Score = 36.7 bits (84), Expect = 0.018
Identities = 14/93 (15%), Positives = 20/93 (21%), Gaps = 10/93 (10%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTK----EWLCNDITIISKDRFKIV-----NDDKSTKL 274
I V G + + +W II D L
Sbjct: 236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATL 295
Query: 275 KVFDSKRGDSG-IYTLAVKNSWGTDKGTAKVTV 306
+ G YT N + T V +
Sbjct: 296 YFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 38.0 bits (88), Expect = 0.003
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 7/125 (5%)
Query: 255 ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
I + + + K +N +S L++ + K D+G Y + + + +L +
Sbjct: 53 IHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQ 112
Query: 315 GPLKPSNITKSSCNLEWRAPRDDGGTDI-LHYVVEKMDMETGR-----WVPMGDVSGTYT 368
+C L +D ++ + + + W P YT
Sbjct: 113 VTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYT 172
Query: 369 -RAEN 372
AEN
Sbjct: 173 CIAEN 177
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 38.0 bits (88), Expect = 0.003
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 14/112 (12%)
Query: 226 IKVRAGSNFEFDINVI--GEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTK------LKV 276
+ G +I + I W + K + K + + LK+
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 277 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCN 328
+ R DSG Y + V ++ GT + + + + I N
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLRILE-----MVSKPMIYWECSN 112
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 37.8 bits (87), Expect = 0.005
Identities = 29/206 (14%), Positives = 58/206 (28%), Gaps = 36/206 (17%)
Query: 321 NITKSSCNLEWRAPRDDGGTDILHY----------VVEKMDMETGRWVPMGDVSGTYTRA 370
+ C T L + + +
Sbjct: 10 YLQTVIC--ILEMWNLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVF 67
Query: 371 ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFG--RPDRPGQPTVTDWGKDHVDL 428
+ D F V+ ++ G+ + +P P TVT +
Sbjct: 68 HFMA---DDIFSVQITDQSGQY-----SQECGSFLLAESIKPAPPFDVTVTF--SGQYQI 117
Query: 429 EWTPPKKDGGSPIS----QYIIEKKPKYGPWEKA---CIVPANITATSVP--DLKEGEEY 479
W +D + QY ++ + + PW + ++ + + S+ + ++ Y
Sbjct: 118 SWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSY 177
Query: 480 EFRVIAVNKGGP---GEPSKASAPVT 502
E +V A G G S+ S PV
Sbjct: 178 ELQVRAGPMPGSSYQGTWSEWSDPVI 203
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 38.1 bits (88), Expect = 0.006
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 14/95 (14%)
Query: 214 VSPYI-NRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
P + RD + S G P+P + L + + V
Sbjct: 182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVT----- 236
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
R G Y +++ G V VL
Sbjct: 237 --------RDLEGTYLCRARSTQGEVTREVTVNVL 263
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 37.9 bits (87), Expect = 0.006
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 260 KDRFKIVNDDKSTK--LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPL 317
++R + D +K+ K D GIYT ++ + T + V + + +
Sbjct: 187 RNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV--VQDEFQRTI 244
Query: 318 KPSNITKS 325
P+ T
Sbjct: 245 SPTPPTDK 252
Score = 34.1 bits (77), Expect = 0.093
Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 23/114 (20%)
Query: 224 SDIKVRAGSNFEFDINV---IGEPIPTKEWLCNDITIIS------------------KDR 262
++V G + V + + +WL + + ++R
Sbjct: 13 PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNR 72
Query: 263 FKIVNDDKSTK--LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
+V D L + D ++ D GIYT ++ + V + +P P
Sbjct: 73 SHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPR 126
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 38.3 bits (88), Expect = 0.006
Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 14/96 (14%)
Query: 213 KVSPYINRDQLS-DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
P ++ + S G P+P + L + + V
Sbjct: 366 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV----- 420
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
R G Y +++ G V VL
Sbjct: 421 --------TRDLEGTYLCRARSTQGEVTREVTVNVL 448
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 36.0 bits (82), Expect = 0.008
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 410 PDRPGQPTVTDWGK--DHVDLEWTPPKKDGGSPISQYIIEKKPK---------------- 451
PG P+ K D + L W PP G I +Y +
Sbjct: 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRI 63
Query: 452 YGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPG 492
Y + +C V A A + D FR+ A N+ G G
Sbjct: 64 YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG 104
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 35.4 bits (81), Expect = 0.026
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 9/98 (9%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS------KDRFKIVNDDKST---KLKV 276
V GS+ + + E + + + +R ++ + +
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHI 71
Query: 277 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
+ DSG Y V D V V +
Sbjct: 72 PSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID 109
Score = 31.2 bits (70), Expect = 0.63
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 242 GEPIPTKEWLCNDITIISKDRFKIVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGT 297
G P+ W + + I + ++ L++ S ++ N+
Sbjct: 129 GYPLAEVSWQNVSVPANTS---HIRTPEGLYQVTSVLRLKPQ---PSRNFSCMFWNAHMK 182
Query: 298 DKGTAKVTVLDIPSPP 313
+ +A + L P
Sbjct: 183 ELTSAIIDPLSRMEPK 198
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 34.7 bits (79), Expect = 0.068
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 6/100 (6%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 271
+ P + + + + P T+ W + ++ + N
Sbjct: 229 QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPK--GVEAQNR--- 283
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
T +G Y N GT G +V + + +
Sbjct: 284 TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAA 323
Score = 32.0 bits (72), Expect = 0.57
Identities = 17/148 (11%), Positives = 34/148 (22%), Gaps = 21/148 (14%)
Query: 242 GEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFDSKRGDSGIYTLAVKNSWGTDK 299
G+P W + N + + ++ S+ V K
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221
Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKS-----SC---------NLEWRAPRDDGGTDILHY 345
+ + V P + + +C W G+
Sbjct: 222 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTT---LNGSLPKGV 278
Query: 346 VVEKMDMETGRWVPMGDVSGTYT-RAEN 372
+ + + +GTY A N
Sbjct: 279 EAQNRTLFFKGPINYSL-AGTYICEATN 305
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 32.5 bits (74), Expect = 0.087
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 19/100 (19%)
Query: 225 DIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIIS---------------KDRFKIVND 268
DI GSN I+ P WL I K R + +
Sbjct: 12 DINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYL--E 69
Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
+ + L + + ++ D G Y + V ++ + V D
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRV-LRETENELKITLEVFD 108
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 34.0 bits (77), Expect = 0.097
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 259 SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK-NSWGTDKGTAKVTVLDIPSPPEGPL 317
++ R D +L + +++ GD Y V+ + GT + TA++ V P E
Sbjct: 64 TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSP 123
Query: 318 KPSNIT 323
++
Sbjct: 124 NKGTLS 129
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 33.3 bits (75), Expect = 0.13
Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 8/124 (6%)
Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS 271
+V P + V G++ + + + + +W + + +D
Sbjct: 4 QVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWR-----GLDTSLGAVQSDTGR 58
Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEW 331
+ L V ++ +G T + T ++ V P+ + P+ + +
Sbjct: 59 SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLT--VSPAALVPGDPEVAC 116
Query: 332 RAPR 335
A +
Sbjct: 117 TAHK 120
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 31.9 bits (73), Expect = 0.19
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 260 KDRFKI--VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-----GTAKVTV 306
+ RF + + K+ L + + DS Y A TDK GT +VTV
Sbjct: 62 QGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPTDKLIFGKGT-RVTV 114
>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex,
fibronectin type-III, immune system; 2.04A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I
Length = 229
Score = 33.2 bits (75), Expect = 0.20
Identities = 32/223 (14%), Positives = 50/223 (22%), Gaps = 47/223 (21%)
Query: 310 PSPPEGPL--KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
+ P+N+T S N + W + VE + +
Sbjct: 4 TADLGPSSVPTPTNVTIESYNMNPIVYWEYQIMPQVP---VFTVEVKNYGVKNSEWIDAC 60
Query: 364 SGTYTR-----AENLIEGHDYNFRVKAVNKIGESL-----------------PLVCQSP- 400
+ RVKA ES P +
Sbjct: 61 INISHHYCNISDHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDGKIGPPKLDIRKE 120
Query: 401 -----ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPW 455
I P + Q D + + GS QY I + +
Sbjct: 121 EKQIMIDIFHPSVFVNGDEQEVDYDPETTCYIRVYNVYVRMNGS-EIQYKILTQKEDDCD 179
Query: 456 EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGP--GEPSK 496
E C + ++P +Y V E SK
Sbjct: 180 EIQCQL-------AIPVSSLNSQYCVSAEGVLHVWGVTTEKSK 215
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 33.4 bits (75), Expect = 0.23
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 8/90 (8%)
Query: 242 GEPIPTKEWLCNDITIISKD------RFKIVNDDKST-KLKVFDSKRGDSGIYT-LAVKN 293
+W + F +++ L + R D G Y +
Sbjct: 472 SYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQG 531
Query: 294 SWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
+ + V V + + + +
Sbjct: 532 HFYGETAAVYVAVEERKAAGSRDVSLAKAD 561
Score = 31.9 bits (71), Expect = 0.62
Identities = 9/97 (9%), Positives = 24/97 (24%), Gaps = 3/97 (3%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCND-ITIISKDRFKIVNDDK--STKLKVFDSKRG 282
+ + +F + R + DK S + + ++
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKE 300
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP 319
D+G Y + +G+ + +
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRS 337
Score = 30.4 bits (67), Expect = 2.3
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 17/99 (17%)
Query: 242 GEPIPTKEWLCND-----ITIIS---------KDRFKIVNDDKSTK---LKVFDSKRGDS 284
E ++ L + +I R ++ + + + D+
Sbjct: 138 TENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDA 197
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
G Y + ++K A + VL ++T
Sbjct: 198 GQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVT 236
Score = 30.0 bits (66), Expect = 2.6
Identities = 13/160 (8%), Positives = 40/160 (25%), Gaps = 22/160 (13%)
Query: 197 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 256
G+ + + + + +K AGS+ + + ++ C
Sbjct: 312 DGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEG 371
Query: 257 IISKDRFKIVNDDKSTKLK------VFDSKRG-------------DSGIYTLAVKNSWGT 297
+ +V+ + K + + + D+G Y
Sbjct: 372 AQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431
Query: 298 DKGTAKVTVLDIPSPPEGPLKPSNITKS---SCNLEWRAP 334
+ P+ + + ++ C+ +
Sbjct: 432 RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFS 471
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 33.1 bits (75), Expect = 0.24
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
+ + + P PT W + F + +L + +
Sbjct: 224 YDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL---PPFAVAQG---AQLLIRPVDK 277
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
+ V N+ G + V V
Sbjct: 278 PINTTLICNVTNALGARQAELTVQV 302
Score = 28.9 bits (64), Expect = 4.4
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 242 GEPIPTKEWLCNDITIISKDRFKIVNDDKST---KLKVFDSKRGDSGIYTLAVKNSWGTD 298
G P W + + + + T + S + D T V++
Sbjct: 144 GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK 203
Query: 299 KGTAKVTVLDIPSPPEGPLKPSN 321
V L + PPE + +
Sbjct: 204 PQLLTVN-LTVYYPPEVSISGYD 225
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 30.9 bits (69), Expect = 0.30
Identities = 13/57 (22%), Positives = 18/57 (31%)
Query: 243 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299
P W ND I + K + D+ S+ SG Y + S D
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 31.4 bits (71), Expect = 0.30
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 260 KDRFKIVNDDKSTK--LKVFDSKRGDSGIYTLAV----KNSWGTDKGTAKVTVLD 308
+ R +++ + L + D K DSG Y N W KGT VTV
Sbjct: 65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGT-TVTVTT 118
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 31.1 bits (71), Expect = 0.35
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 260 KDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKNSWGTDK-----GTAKVTVL 307
R K D + + L + D++ DSG Y A + S G+ + GT ++TV+
Sbjct: 56 NGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGT-QLTVM 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.35
Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 18/104 (17%)
Query: 519 DMTAQE--YNPFITLLFKNFVLDLN-----EGLKSMVKLSYIDNVPGKPSKPEATDVDKD 571
+ + Y +++ FV + + + KS++ ID++ T
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL---- 65
Query: 572 HIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
++ W +S ++ + VE R + +++ PI+T+
Sbjct: 66 --RLFWTL-LSKQEEMVQKF-VEEVLRINYKFLM---SPIKTEQ 102
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 30.8 bits (70), Expect = 0.42
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 260 KDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSP 312
K+R I D++ + + D + D+GIY + G D KVTV P P
Sbjct: 60 KNRVSI-RDNQRDFIFTVTMEDLRMSDAGIYWCGIT-KGGLDPMF-KVTVNIGPVP 112
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 31.4 bits (70), Expect = 0.57
Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 9/139 (6%)
Query: 366 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDH 425
+ +A +L++ + V ++G + + G
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
Query: 426 -VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITATSVPDLKEGEEYEFRV 483
+ + W +S Y I G VP + + ++ LK G +Y
Sbjct: 119 SLLISWDASY----YGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDY---T 171
Query: 484 IAVNKGGPGEPSKASAPVT 502
I V S +P++
Sbjct: 172 ITVYAYSDYYGSHHYSPIS 190
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 30.3 bits (68), Expect = 0.71
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 260 KDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNS---WGTDKGTAKVTVLDIPSPP 313
+DRF ++ D K+ L + D++ D+G Y ++ W V V + P
Sbjct: 74 RDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTHRP 132
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 31.0 bits (70), Expect = 0.95
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 260 KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-------KGTAKVTVLDIPSP 312
+ T+L++ + T+ +G+ K+TVL+
Sbjct: 62 PGADYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGS-KLTVLEDLKN 120
Query: 313 PEGP----LKPS 320
P +PS
Sbjct: 121 VFPPEVAVFEPS 132
>2hft_A Human tissue factor; coagulation factor; 1.69A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1jps_T 1ahw_C 1boy_A 1tfh_A 1wtg_T*
1wss_T* 1wqv_T* 1wun_T* 1wv7_T* 2zp0_T* 2zwl_T* 2zzu_T*
1z6j_T* 2aei_T* 2flb_T* 2b7d_T* 2f9b_T* 1o5d_T* 2flr_T*
1w0y_T* ...
Length = 218
Score = 30.9 bits (69), Expect = 1.0
Identities = 37/199 (18%), Positives = 60/199 (30%), Gaps = 35/199 (17%)
Query: 317 LKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTY---T 368
+ N+T S N LEW + Y V+ + ++G W + T T
Sbjct: 7 VAAYNLTWKSTNFKTILEWEPKPVN-----QVYTVQ-ISTKSGDWKSKCFYTTDTECDLT 60
Query: 369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDR---PGQPTVTDWGKD- 424
Y RV + P+ P P GQPT+ + +
Sbjct: 61 DEIVKDVKQTYLARVFSYPAGNVESTGSAGEPLYENSPEFTPYLETNLGQPTIQSFEQVG 120
Query: 425 ---HVDLE-WTPPKKDGGSPIS-------------QYIIEKKPKYGPWEKACIVPANITA 467
+V +E + + +S Y + G + T
Sbjct: 121 TKVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWKSSSQEKGEFRSGKKTAKTNTN 180
Query: 468 TSVPDLKEGEEYEFRVIAV 486
+ D+ +GE Y F V AV
Sbjct: 181 EFLIDVDKGENYCFSVQAV 199
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 31.1 bits (70), Expect = 1.1
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 464 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVID 513
+ +V LK Y+F V A G S AS P+T K +++
Sbjct: 111 VMQNFTVIGLKPETSYQFTVKAQY--ADGSLSVASKPITAKTSAKPQIVN 158
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 29.1 bits (65), Expect = 1.6
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 260 KDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
+DR I D++ + + + D + D+ Y ++ + T +VT+ P E
Sbjct: 61 RDRVSI-KDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEET 119
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 28.8 bits (65), Expect = 2.1
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 259 SKDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-------KGTAKVTV 306
+ + S L + ++ DS +Y A++ +G GT ++V
Sbjct: 59 TVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNKLIFGTGT-LLSV 114
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 28.7 bits (64), Expect = 2.2
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 253 NDITIISKDRFKIVNDDKSTK--LKVFDSKRGDSGIYTLAVKNS-WGTD-KGTAKVTVLD 308
+ +T R+ + L + +S DSG+Y V+ W D K T + V
Sbjct: 52 HRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111
Query: 309 IPSP 312
P
Sbjct: 112 ELVP 115
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 28.5 bits (64), Expect = 2.4
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 17/66 (25%)
Query: 257 IISKD-RFKIV--NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-------------KG 300
ISK R+ + KS L++ D D G Y + + G G
Sbjct: 48 SISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAGGYCDYALCSSRYAECGDG 107
Query: 301 TAKVTV 306
T VTV
Sbjct: 108 T-AVTV 112
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 28.4 bits (63), Expect = 2.8
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 260 KDRFKIVNDDKSTK--LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
K+R + V D + + + D+G +T VKN T++VT+ P
Sbjct: 67 KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 29.1 bits (65), Expect = 3.0
Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 16/115 (13%)
Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDIT 256
S+P + + Q S V G + + +
Sbjct: 73 VNESEPVYLEVFSDWLLL------QASAEVVMEGQPLFLRCHGWRNWDVYKVIYY----- 121
Query: 257 IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDIP 310
KD + ++ + + ++ DSG Y K + +TV+ P
Sbjct: 122 ---KDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 29.1 bits (65), Expect = 3.0
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 260 KDRFKIVNDDKSTKLKVFDSKRGDSGIYT-LAVKNSWGTDKGTAKVTVLDIPSPPE 314
++ ++ + + DSG Y + S T ++T+ +
Sbjct: 125 QNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 28.2 bits (62), Expect = 3.0
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 259 SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAKVTVLD 308
D + D L + +K DSG Y L + N+ G ++ +LD
Sbjct: 64 FSDIYGF--DYGDFALSIKSAKLQDSGHYLLEITNTGGKVCNKNFQLLILD 112
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 29.8 bits (67), Expect = 3.2
Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 8/80 (10%)
Query: 249 EWLCNDITIIS---KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG---TDKGTA 302
+ L + RF S L + + D Y A NS
Sbjct: 44 KLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGT 103
Query: 303 KVTVLDIP--SPPEGPLKPS 320
KVTVL P +P PS
Sbjct: 104 KVTVLGQPKANPTVTLFPPS 123
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 28.5 bits (64), Expect = 3.2
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 259 SKDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-------KGTAKVTVL-D 308
+ + S L + ++ DS +Y A++ +G GT ++V
Sbjct: 59 TVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNKLIFGTGT-LLSVKPG 117
Query: 309 IPSPP 313
Sbjct: 118 SADDA 122
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 29.6 bits (67), Expect = 3.6
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
+ + EY V A ++ G + + +
Sbjct: 168 VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPE 205
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 28.0 bits (62), Expect = 3.7
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 253 NDITIISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNS-WGTD-KGTAKVTV 306
++T R+++ D L + + D G Y ++ D K K+ +
Sbjct: 51 RNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 27.9 bits (62), Expect = 4.3
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 260 KDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
K R ++D + + V + + D G Y VK + G + VL
Sbjct: 74 KGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 27.3 bits (61), Expect = 5.6
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 8/51 (15%)
Query: 464 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQ 514
+ T D + Y AV+ G + + V DQ
Sbjct: 63 WLKVTEPLDRERIATYTLFSHAVSSNGN--AVEDPMEILIT------VTDQ 105
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 28.2 bits (63), Expect = 5.6
Identities = 9/95 (9%), Positives = 21/95 (22%), Gaps = 10/95 (10%)
Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKST 272
V Q ++ + G + + K + ++
Sbjct: 83 VLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFF--------QNGKSQKFSHLDP 134
Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTV 306
+ + SG Y + +TV
Sbjct: 135 TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 27.5 bits (61), Expect = 5.7
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 260 KDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
R I D + + + + D+G Y V W D V V
Sbjct: 54 NGRVSI-RDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEV 102
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 27.8 bits (61), Expect = 5.9
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDD-----GGTDILHYVVEKMDMETGRWVPMGDVS 364
P+PP+ + +T ++ + WR P G ++ Y V + V
Sbjct: 18 PAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA-KGQRVAEVIFPTAD 76
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 417
T L V+ ++ GES+ + + + P P+
Sbjct: 77 STAVELVRLRSLEAKGVTVRTLSAQGESVDSAV-AAVPPELLVPPTPHPSGPS 128
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 27.4 bits (60), Expect = 6.2
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 319 PSNIT----KSSCNLEWRAPRDDGGTDILHYVVE-------KMDMETGRWVPMGDVSGTY 367
PSN+T + C + W+ PR L + + + +
Sbjct: 21 PSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENR 80
Query: 368 TRAENLIEGHDYNFRVKA 385
+ ++ +++A
Sbjct: 81 YNFPSSEPRAKHSVKIRA 98
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 27.2 bits (60), Expect = 7.3
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 260 KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV--KNSWGTDKGTAKVTV 306
+R + + + L + D + D+G Y + + T + +
Sbjct: 62 YERIHALGPNYN--LVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 28.4 bits (62), Expect = 8.4
Identities = 24/178 (13%), Positives = 45/178 (25%), Gaps = 27/178 (15%)
Query: 289 LAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGG--------T 340
L ++ + L I + P P++ + + +
Sbjct: 664 LFFEHEGAVKDYQFNLGQLTISDNHQEPQSPTSFSVVK---QSLKNAQEAEAVVQFKGNK 720
Query: 341 DILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSP 400
D Y V + D ++ + L + V++ + +
Sbjct: 721 DADFYEVYEKDGDSWKL---------------LTGSSSTTIYLPKVSRSASAQGTTQELK 765
Query: 401 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 458
+ A G T DWG D P + P + I PK E
Sbjct: 766 VVAVGKNGVRSEAATTTF-DWGMTVKDTSLPKPLAENIVPGATVIDSTFPKTEGGEGI 822
>2kzw_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI-2, protein structure initiative;
NMR {Methanosarcina mazei}
Length = 145
Score = 27.2 bits (60), Expect = 9.9
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 283 DSGIYT--LAVKNSWGTDKGTAKVTVLD 308
+ G Y L V N +D + + L+
Sbjct: 112 NEGEYIVSLIVSNENDSDSASVTIRALE 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.137 0.423
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,875,842
Number of extensions: 615895
Number of successful extensions: 2939
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2306
Number of HSP's successfully gapped: 1134
Length of query: 616
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 517
Effective length of database: 3,937,614
Effective search space: 2035746438
Effective search space used: 2035746438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.5 bits)