BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12428
(60 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ GVA L IQ+ PED G Y C A N+LG +TV
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 10 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L S+ +++KN VASL I +V D G Y C A NS+G + L ++
Sbjct: 46 LRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK 96
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 16 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L + + VA+LQI + G Y C+A+N LGTA + KLT+
Sbjct: 148 LQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTL 191
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 10 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ SS + + + SL I E +PED G Y ATNS+G A + +L V+
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 10 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ SS + + + SL I E +PED G Y ATNS+G A + +L V+
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 18 LKYKNGVAS-LQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTV 59
+++ +G S L+IQ + DE +Y CTATNSLG T KL+V
Sbjct: 56 IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 99
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGT 50
+LQI+ D+G Y C ATNS GT
Sbjct: 165 GALQIESSEESDQGKYECVATNSAGT 190
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar In
Complex With Sucrose Octasulphate
Length = 214
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 18 LKYKNGVAS-LQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTV 59
+++ +G S L+IQ + DE +Y CTATNSLG T KL+V
Sbjct: 55 IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 98
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGT 50
+LQI+ D+G Y C ATNS GT
Sbjct: 164 GALQIESSEESDQGKYECVATNSAGT 189
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L+I + D G+Y CT NS G+ + CKLT++
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 35 EDEGVYVCTATNSLGTAETKCKLTVR 60
EDEGVY C ATN +G ET KL ++
Sbjct: 73 EDEGVYTCIATNEVGEVETSSKLLLQ 98
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 1 MKHDNSTIPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K DN P+ S + Y + G SL I EV +D+ Y C A NSLG A +L V
Sbjct: 76 FKDDN---PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Query: 60 R 60
Sbjct: 133 E 133
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 1 MKHDNSTIPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K DN P+ S + Y + G SL I EV +D+ Y C A NSLG A +L V
Sbjct: 76 FKDDN---PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Query: 60 R 60
Sbjct: 133 E 133
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
SL+I V ED G Y C A NSLGTA +K
Sbjct: 153 GSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 15 ILDLKY---KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 55
+ D +Y +NG L I V D+G+Y CTA N +G A C
Sbjct: 50 LFDTRYSIRENG-QLLTILSVEDSDDGIYCCTANNGVGGAVESC 92
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
DN T+ +S +L K+G +L I+ V EDEG+Y C A + LG A+ +
Sbjct: 46 KDNETLVEDSGIVL----KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 93
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 18 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L +NGV SL I+ V D G+Y C ATN G +L V
Sbjct: 59 LVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
DN T+ +S +L K+G +L I+ V EDEG+Y C A + LG A+ +
Sbjct: 703 DNETLVEDSGIVL----KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 749
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
MK+ + IP + I+ G ++L+I V DEG Y C A N G A++ +L V
Sbjct: 347 MKNGDVVIPSDYFQIV------GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGT 50
+LQI + P D GVY C+A N T
Sbjct: 177 GALQISRLQPGDSGVYRCSARNPAST 202
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L +S ++ Y++GVA L ++++ D+G Y C N G + +L V+
Sbjct: 42 QLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 32.3 bits (72), Expect = 0.075, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETK 54
LQI+ ED+G Y C A NS+GT +K
Sbjct: 167 LQIENSREEDQGKYECVAENSMGTEHSK 194
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 25 ASLQIQEVF-PEDEGVYVCTATNSLGTAETKCKLTV 59
A L+IQ + P DE VY C A NS+G KLTV
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLG 49
+LQI+ D+G Y C ATNS G
Sbjct: 164 GALQIESSEETDQGKYECVATNSAG 188
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 25 ASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTV 59
A L+IQ + P DE VY C A NS+G KLTV
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLG 49
+LQI+ D+G Y C ATNS G
Sbjct: 164 GALQIESSEETDQGKYECVATNSAG 188
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 25 ASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTV 59
A L+IQ + P DE VY C A NS+G KLTV
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLG 49
+LQI+ D+G Y C ATNS G
Sbjct: 164 GALQIESSEETDQGKYECVATNSAG 188
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 32.0 bits (71), Expect = 0.089, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETK 54
LQI+ ED+G Y C A NS+GT +K
Sbjct: 165 LQIENSREEDQGKYECVAENSMGTEHSK 192
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 IPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
IPLNS + D YK V +L + V +D G+Y C A+N +GT
Sbjct: 230 IPLNS-DFQDNYYKK-VRALSLNAVDFQDAGIYSCVASNDVGT 270
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 IPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
IPLNS + D YK V +L + V +D G+Y C A+N +GT
Sbjct: 230 IPLNS-DFQDNYYKK-VRALSLNAVDFQDAGIYSCVASNDVGT 270
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 8 IPLNSSN----ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
+P+++SN I L+ ++ + +LQI++ D+G Y C ATNS GT
Sbjct: 147 LPVDTSNNNGRIKQLRSES-IGALQIEQSEESDQGKYECVATNSAGT 192
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 18 LKYKNGVAS-LQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTV 59
+++ +G S L+IQ + P DE +Y C A+N++G +LTV
Sbjct: 55 IEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTV 98
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 10 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+N N +L + +LQI E D G Y C ATNS+G+A L VR
Sbjct: 147 INKENYTEL----NIVNLQITE----DPGEYECNATNSIGSASVSTVLRVR 189
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 16 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L ++ +LQI V EDEG Y C A NS G + ++ V+
Sbjct: 247 LSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQ 291
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
PL S N +++ L+ ++ ED G+Y C A N GT +L V+
Sbjct: 333 PLASQNRVEVL----AGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQ 380
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L+ + K +L I++ ED G Y+C NS+G + LTV
Sbjct: 260 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L+I+ V ED+G+Y C N +AE +L +
Sbjct: 355 LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L+ + K +L I++ ED G Y+C NS+G + LTV
Sbjct: 266 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 310
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L+I+ V ED+G+Y C N +AE +L +
Sbjct: 361 LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 393
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
PL S N +++ L+ ++ ED G+Y C A N GT +LTV+
Sbjct: 334 PLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLG 49
L IQ V EDEG Y C A N G
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKG 281
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
K++N +L+I V ED G Y C A+N +G+ + V+
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 310
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L+ + K +L I++ ED G Y+C NS+G + LTV
Sbjct: 263 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 307
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L+I+ V ED+G+Y C N +AE +L +
Sbjct: 358 LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 59
L + PEDEGVY C N +G + KLTV
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 29.6 bits (65), Expect = 0.51, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
VA I + P D GV+VC+ G E ++V+
Sbjct: 384 VAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVK 420
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
NG+ L I+ V P D G YVCT +N + L V+
Sbjct: 61 NGI--LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 36 DEGVYVCTATNSLGTA 51
DEGVYVC A N LG A
Sbjct: 83 DEGVYVCVARNYLGEA 98
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
V+ L I V D G+Y C A + +G AE KL V
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV 524
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L+ + K +L I++ ED G Y+C NS+G + LTV
Sbjct: 296 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57
L+I+ V ED+G+Y C N +AE +L
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRESAEASAEL 421
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 1 MKHDNSTIPL----NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 56
K +NS L NS + D Y+ A+L I D GV++C A N+ G+A
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQ-ATLTISSARVNDSGVFMCYANNTFGSANVTTT 304
Query: 57 LTV 59
L V
Sbjct: 305 LEV 307
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 1 MKHDNSTIPL----NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 56
K +NS L NS + D Y+ A+L I D GV++C A N+ G+A
Sbjct: 221 WKRENSQTKLQEKYNSWHHGDFNYERQ-ATLTISSARVNDSGVFMCYANNTFGSANVTTT 279
Query: 57 LTV 59
L V
Sbjct: 280 LEV 282
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVR 60
+L I V P DEG Y C A N +GT E+ KL V+
Sbjct: 170 GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVR 60
+L I V P DEG Y C A N +GT E+ KL V+
Sbjct: 170 GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L ++ V ED G Y C A NS+G + LTV
Sbjct: 186 LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 28.9 bits (63), Expect = 0.71, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 36 DEGVYVCTATNSLGTA 51
DEGVYVC A N LG A
Sbjct: 83 DEGVYVCVARNYLGEA 98
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTV 59
L I D G YVC TN +G E++ +LTV
Sbjct: 167 LMITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L ++ V ED G Y C A NS+G + LTV
Sbjct: 187 LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L ++ V ED G Y C A NS+G + LTV
Sbjct: 186 LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 25 ASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTV 59
A L+IQ + P DE +Y C A N G KLTV
Sbjct: 63 AVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTV 98
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L++ V D G Y+C ATN +G AE L+V
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 18 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+K ++ SL ++ V P D G Y C N G+ L V
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 16 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+++K ++G +SL I++V D G Y C A + +G + L +
Sbjct: 54 IEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 16 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+++K ++G +SL I++V D G Y C A + +G + L +
Sbjct: 54 IEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
I K +N SL ++ V P D+G Y C N G+ L V
Sbjct: 59 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 103
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
I K +N SL ++ V P D+G Y C N G+ L V
Sbjct: 60 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 104
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
I K +N SL ++ V P D+G Y C N G+
Sbjct: 55 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 90
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ G+ L+I D G Y C A N G + + +L VR
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTV 59
L + +G L E+ EDEGVY+C AT G E++ LTV
Sbjct: 69 FLRPSFTDGTIRLSRLEL--EDEGVYICEFATFPTGNRESQLNLTV 112
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
K +N SL ++ V P D+G Y C N G+
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 93
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 178 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
K +N SL ++ V P D+G Y C N G+
Sbjct: 60 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 91
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 176 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 211
>pdb|1MI5|E Chain E, The Crystal Structure Of Lc13 Tcr In Complex With
Hlab8-Ebv Peptide Complex
pdb|3KPR|E Chain E, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPR|J Chain J, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPS|E Chain E, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylqafty A Self Peptide From The Abcd3
Protein
Length = 241
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 51
D S +P S + + V++L+IQ ED VY+C + SLG A
Sbjct: 54 DKSGLP--SDRFFAERPEGSVSTLKIQRTQQEDSAVYLCAS--SLGQA 97
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTV 59
L + +G L E+ EDEGVY+C AT G E++ LTV
Sbjct: 69 FLRPSFTDGTIRLSRLEL--EDEGVYICEFATFPTGNRESQLNLTV 112
>pdb|1KGC|E Chain E, Immune Receptor
Length = 242
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 51
D S +P S + + V++L+IQ ED VY+C + SLG A
Sbjct: 55 DKSGLP--SDRFFAERPEGSVSTLKIQRTQQEDSAVYLCAS--SLGQA 98
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
Length = 219
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
K +N SL ++ V P D+G Y C N G+
Sbjct: 61 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 92
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 177 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 212
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
K +N SL ++ V P D+G Y C N G+
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 93
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 178 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|2B0S|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Mn Peptide
pdb|2B1A|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug1033 Peptide
pdb|2B1H|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug29 Peptide
Length = 215
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 25 ASLQIQEVFPEDEGVYVCTATN 46
ASL I + PEDEG Y C A +
Sbjct: 72 ASLAISGLRPEDEGDYYCAAWD 93
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTV 59
L + +G L E+ EDEGVY+C AT G E++ LTV
Sbjct: 84 FLRPSFTDGTIRLSRLEL--EDEGVYICEFATFPTGNRESQLNLTV 127
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
K +N SL ++ V P D+G Y C N G+
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 93
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 178 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 18 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+K ++ SL ++ V P D G Y C N G+ L V
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 214
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L + V ED G Y C A NS+G + L V
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTV 59
L + +G L E+ EDEGVY+C AT G E++ LTV
Sbjct: 70 FLRPSFTDGTIRLSRLEL--EDEGVYICEFATFPTGNRESQLNLTV 113
>pdb|3PL6|C Chain C, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 206
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLG----TAETKCKLTV 59
SL I E PED VY C A+ S G T T +LT+
Sbjct: 73 SLHITETQPEDSAVYFCAAS-SFGNEKLTFGTGTRLTI 109
>pdb|3OF6|A Chain A, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|B Chain B, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|C Chain C, Human Pre-T Cell Receptor Crystal Structure
Length = 255
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 51
D S +P S + + V++L+IQ ED VY+C + SLG A
Sbjct: 59 DKSGLP--SDRFFAERPEGSVSTLKIQRTQQEDSAVYLCAS--SLGQA 102
>pdb|1KXQ|E Chain E, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|F Chain F, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|G Chain G, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|H Chain H, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
Length = 120
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 27 LQIQEVFPEDEGVYVCTATNSL 48
LQ+ + PED G+Y C NS+
Sbjct: 78 LQMNSLKPEDTGIYYCATGNSV 99
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
K +N SL ++ V P D+G Y C N G+
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 101
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
K +N SL ++ V P D+G Y C N G+
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 101
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K L ++ + D G YVC ATN G E + L V
Sbjct: 148 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 11 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
NS + D Y+ +L I +D GV++C A N+ G+A L V
Sbjct: 239 NSWHRGDFNYERQ-ETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
>pdb|2IJ0|E Chain E, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
pdb|2IJ0|C Chain C, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
Length = 118
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTA 51
+++L + PED G YVC+A G++
Sbjct: 76 LSTLTVTSAHPEDSGFYVCSALAGSGSS 103
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ L I+ V ED G Y C A NS+G + LTV
Sbjct: 178 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
K +N SL + V P D+G Y C N G+
Sbjct: 62 KVRNQHWSLIXESVVPSDKGNYTCVVENEYGS 93
>pdb|3Q5T|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 241
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
DNS +P S ++ K ++L+IQ D Y+C +++ +GT
Sbjct: 57 DNSQLP--SDRFSAVRPKGTNSTLKIQSAKQGDTATYLCASSSGVGT 101
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K L ++ + D G YVC ATN G E + L V
Sbjct: 54 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 16 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG 49
+++K ++G +SL I++V D G Y C A + +G
Sbjct: 148 IEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K L ++ + D G YVC ATN G E + L V
Sbjct: 244 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
A L+I + EDEG+Y C A N G + + ++ V+
Sbjct: 165 AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
>pdb|4IDL|A Chain A, Low Melting Temperature Anti-cholera Toxin Llama Vhh
Domain
Length = 136
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTA 44
N A+LQ+ + PED VY C A
Sbjct: 77 NNAATLQMDSLKPEDTAVYYCNA 99
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ G+ SL + V D G Y C A N G A +L V
Sbjct: 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
>pdb|3MFG|B Chain B, Crystal Structure Of Toxic Shock Syndrome Toxin 1 (Tsst-1)
In Complex With The Human T Cell Receptor Beta Chain
Vbeta2.1 (Ep-8)
Length = 118
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTA 51
+++L + PED G Y+C+A G++
Sbjct: 76 LSTLTVTSAHPEDSGFYICSALAGSGSS 103
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 27 LQIQEVFPEDEGVYVCTATNSL 48
LQI+ P D G+Y CTA ++
Sbjct: 53 LQIKGATPRDSGLYACTAARTV 74
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L V D GVY C TN G + L V
Sbjct: 407 GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human
Leucine- Rich Repeat-Containing Protein 4
Length = 103
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L V D GVY C TN G + L V
Sbjct: 62 GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 10 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 46
L +S L L + P D GVYVC A N
Sbjct: 55 LAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|3O4L|E Chain E, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
Length = 245
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAET 53
+++L + PED Y+C+A + G T
Sbjct: 76 LSTLTVTSAHPEDSSFYICSARDGTGNGYT 105
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58
NG+ L+I ED G Y C A NS G K +LT
Sbjct: 256 NGI--LEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 290
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 35 EDEGVYVCTATNSLGT 50
+D G Y C ATNS GT
Sbjct: 72 QDAGTYQCIATNSFGT 87
>pdb|2J0A|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe
pdb|2J0B|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe In
Complex With Udp And Manganese
Length = 280
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 17 DLKYKNGVASLQIQEVFPEDEGVYV 41
D Y N A LQ+ + FP+D VYV
Sbjct: 102 DDNYVNPKALLQLLKTFPQDRDVYV 126
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58
NG+ L+I ED G Y C A NS G K +LT
Sbjct: 257 NGI--LEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 291
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 35 EDEGVYVCTATNSLGT 50
+D G Y C ATNS GT
Sbjct: 73 QDAGTYQCIATNSFGT 88
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 10 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 46
L +S L L + P D GVYVC A N
Sbjct: 55 LAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 31 EVFPEDEGVYVCTATNS 47
E+ P+D+G Y C AT+S
Sbjct: 63 EIGPQDQGTYSCVATHS 79
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
K +N SL + V P D+G Y C N G+
Sbjct: 69 KVRNQHWSLIXESVVPSDKGNYTCVVENEYGS 100
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 10 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 46
L +S L L + P D GVYVC A N
Sbjct: 54 LAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
G A+LQI +V +D GVY C S G A+ K ++TV+
Sbjct: 78 GNAALQITDVKLQDAGVYRCMI--SYGGADYK-RITVK 112
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
G A+LQI +V +D GVY C S G A+ K ++TV+
Sbjct: 78 GNAALQITDVKLQDAGVYRCMI--SYGGADYK-RITVK 112
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
G A+LQI +V +D GVY C S G A+ K ++TV+
Sbjct: 78 GNAALQITDVKLQDAGVYRCMI--SYGGADYK-RITVK 112
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 10 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L + L+ V LQI + D GVY C G T LTVR
Sbjct: 46 LRDGDKYSLRQDGAVCELQIHGLAMADNGVYSCV----CGQERTSATLTVR 92
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 31 EVFPEDEGVYVCTATNS 47
E+ P+D+G Y C AT+S
Sbjct: 56 EIGPQDQGTYSCVATHS 72
>pdb|1Q72|H Chain H, Anti-Cocaine Antibody M82g2 Complexed With Cocaine
Length = 223
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLG 49
LQ+ + ED G+Y CT+ LG
Sbjct: 83 LQMNSLRAEDTGIYYCTSVPQLG 105
>pdb|1QYG|H Chain H, Anti-Cocaine Antibody M82g2 Complexed With Benzoylecgonine
pdb|1RFD|H Chain H, Anti-Cocaine Antibody M82g2
pdb|1RIU|H Chain H, Anti-Cocaine Antibody M82g2 Complexed With
Norbenzoylecgonine
pdb|1RIV|H Chain H, Anti-Cocaine Antibody M82g2 Complexed With Meta-
Oxybenzoylecgonine
Length = 223
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLG 49
LQ+ + ED G+Y CT+ LG
Sbjct: 83 LQMNSLRAEDTGIYYCTSVPQLG 105
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + + L I+ V DE YVC A N G + L V
Sbjct: 249 FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57
+K+G+ +L I E +D G+Y + G +++ KL
Sbjct: 56 FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 93
>pdb|3MUG|A Chain A, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|C Chain C, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|E Chain E, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|G Chain G, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|I Chain I, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|K Chain K, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
Length = 216
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 44
M D S P SN ASL I + EDEG Y C++
Sbjct: 49 MVFDVSHRPSGISNRFSGSKSGNTASLTISGLHIEDEGDYFCSS 92
>pdb|3ULS|H Chain H, Crystal Structure Of Fab12
pdb|3ULS|B Chain B, Crystal Structure Of Fab12
pdb|3ULU|D Chain D, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|D Chain D, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 226
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 26 SLQIQEVFPEDEGVYVC 42
SLQ+ V PED VY C
Sbjct: 83 SLQLNSVTPEDTAVYYC 99
>pdb|3MME|L Chain L, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|B Chain B, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|D Chain D, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
Length = 216
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 44
M D S P SN ASL I + EDEG Y C++
Sbjct: 49 MVFDVSHRPSGISNRFSGSKSGNTASLTISGLHIEDEGDYFCSS 92
>pdb|3LRS|L Chain L, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|B Chain B, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|D Chain D, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|F Chain F, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
Length = 211
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 44
M D S P SN ASL I + EDEG Y C++
Sbjct: 47 MVFDVSHRPSGISNRFSGSKSGNTASLTISGLHIEDEGDYFCSS 90
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57
+K+G+ +L I E +D G+Y + G +++ KL
Sbjct: 166 FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
>pdb|3QXT|A Chain A, Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXT|B Chain B, Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXU|A Chain A, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
pdb|3QXU|B Chain B, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
pdb|3QXU|C Chain C, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
pdb|3QXU|D Chain D, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
Length = 126
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETK 54
LQ+ + PED VY C A ++ TA +
Sbjct: 83 LQMDSLKPEDTAVYYCAADDNYVTASWR 110
>pdb|3QXV|A Chain A, Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXV|B Chain B, Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXV|C Chain C, Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXV|D Chain D, Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXV|E Chain E, Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXW|A Chain A, Free Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody
pdb|3QXW|B Chain B, Free Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody
pdb|3QXW|C Chain C, Free Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody
pdb|3QXW|D Chain D, Free Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody
pdb|3QXW|E Chain E, Free Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody
Length = 126
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETK 54
LQ+ + PED VY C A ++ TA +
Sbjct: 83 LQMDSLKPEDTAVYYCAADDNYVTASWR 110
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 35 EDEGVYVCTATNSLGTAETKCKLTVR 60
EDEGVY T N +G E + LTV+
Sbjct: 113 EDEGVYTVTVKNPVG--EDQVNLTVK 136
>pdb|3S35|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S36|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 122
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 17 DLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGT 50
DLK ++G +++L I V D+G+Y C A++ L T
Sbjct: 60 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 99
>pdb|3MUH|L Chain L, Crystal Structure Of Pg9 Light Chain
Length = 216
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 42
+D S P SN ASL I + EDEG Y C
Sbjct: 51 YDVSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEGDYYC 90
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57
+K+G+ +L I E +D G+Y + G +++ KL
Sbjct: 271 FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
>pdb|3U2S|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U2S|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U36|L Chain L, Crystal Structure Of Pg9 Fab
pdb|3U36|B Chain B, Crystal Structure Of Pg9 Fab
pdb|3U36|D Chain D, Crystal Structure Of Pg9 Fab
pdb|3U36|F Chain F, Crystal Structure Of Pg9 Fab
pdb|3U4E|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
pdb|3U4E|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
Length = 216
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 42
+D S P SN ASL I + EDEG Y C
Sbjct: 51 YDVSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEGDYYC 90
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L V +D G+Y C +NS+G L V
Sbjct: 397 GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|3K81|A Chain A, Structure Of The Central Interaction Protein From The
Trypanosoma Brucei Editosome In Complex With Single
Domain Antibodies
pdb|3K81|B Chain B, Structure Of The Central Interaction Protein From The
Trypanosoma Brucei Editosome In Complex With Single
Domain Antibodies
Length = 127
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGT 50
V LQ+ + PED VY C A GT
Sbjct: 77 VMYLQMNSLKPEDTAVYYCNANLQTGT 103
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain
Length = 121
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKC 55
SL+I ++ ED G Y C + G+ + +C
Sbjct: 67 SLRINDLTVEDSGTYRCKPESRYGSYDAEC 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,623,687
Number of Sequences: 62578
Number of extensions: 47415
Number of successful extensions: 733
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 213
length of query: 60
length of database: 14,973,337
effective HSP length: 31
effective length of query: 29
effective length of database: 13,033,419
effective search space: 377969151
effective search space used: 377969151
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)