Query psy12428
Match_columns 60
No_of_seqs 106 out of 1486
Neff 11.7
Searched_HMMs 46136
Date Fri Aug 16 19:02:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05748 Ig_Titin_like Immunogl 99.6 1.8E-14 3.9E-19 58.7 7.8 58 2-59 17-74 (74)
2 cd05762 Ig8_MLCK Eighth immuno 99.6 2.9E-14 6.4E-19 60.9 7.7 58 2-59 33-90 (98)
3 cd05892 Ig_Myotilin_C C-termin 99.6 5.9E-14 1.3E-18 57.5 7.0 58 2-59 16-75 (75)
4 cd05852 Ig5_Contactin-1 Fifth 99.6 2.3E-14 5.1E-19 58.4 5.7 55 2-59 19-73 (73)
5 cd05723 Ig4_Neogenin Fourth im 99.5 1.7E-13 3.8E-18 55.5 7.0 55 2-59 17-71 (71)
6 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 2.9E-13 6.3E-18 56.7 7.7 58 2-59 28-86 (86)
7 cd05744 Ig_Myotilin_C_like Imm 99.5 3.7E-13 8E-18 55.1 7.6 58 2-59 16-75 (75)
8 cd05893 Ig_Palladin_C C-termin 99.5 3.6E-13 7.7E-18 55.2 7.0 58 2-59 16-75 (75)
9 cd05745 Ig3_Peroxidasin Third 99.5 1.8E-13 3.9E-18 55.8 5.5 55 2-59 20-74 (74)
10 cd05737 Ig_Myomesin_like_C C-t 99.5 5.4E-13 1.2E-17 56.4 7.0 58 2-59 34-92 (92)
11 cd05746 Ig4_Peroxidasin Fourth 99.5 2.2E-13 4.7E-18 54.9 5.2 53 2-57 16-68 (69)
12 cd04969 Ig5_Contactin_like Fif 99.5 3.5E-13 7.6E-18 54.8 5.5 54 3-59 20-73 (73)
13 cd05747 Ig5_Titin_like M5, fif 99.5 1.4E-12 3.1E-17 55.1 7.4 56 2-57 36-91 (92)
14 PF07679 I-set: Immunoglobulin 99.5 9E-13 1.9E-17 55.2 6.8 58 2-59 33-90 (90)
15 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 1.9E-12 4.2E-17 53.7 7.5 58 2-59 16-80 (81)
16 cd04975 Ig4_SCFR_like Fourth i 99.5 1.6E-12 3.5E-17 55.9 7.3 58 2-59 37-99 (101)
17 cd05735 Ig8_DSCAM Eight immuno 99.4 4.7E-12 1E-16 53.2 7.8 59 2-60 19-82 (88)
18 cd05743 Ig_Perlecan_D2_like Im 99.4 2E-12 4.3E-17 53.2 6.5 56 2-57 19-74 (78)
19 cd05854 Ig6_Contactin-2 Sixth 99.4 3.9E-12 8.5E-17 53.2 7.1 59 2-60 20-82 (85)
20 cd05855 Ig_TrkB_d5 Fifth domai 99.4 4.2E-12 9E-17 52.5 6.7 57 2-58 16-77 (79)
21 cd05736 Ig2_Follistatin_like S 99.4 3E-12 6.5E-17 52.3 6.3 58 2-59 16-73 (76)
22 cd05866 Ig1_NCAM-2 First immun 99.4 1E-11 2.2E-16 52.6 8.0 54 5-58 36-90 (92)
23 cd05763 Ig_1 Subgroup of the i 99.4 5.8E-12 1.3E-16 51.4 6.9 45 14-60 31-75 (75)
24 cd05730 Ig3_NCAM-1_like Third 99.4 4.8E-12 1E-16 53.6 6.8 56 2-59 36-92 (95)
25 cd05867 Ig4_L1-CAM_like Fourth 99.4 8.5E-12 1.8E-16 51.1 7.1 54 2-59 19-75 (76)
26 cd05859 Ig4_PDGFR-alpha Fourth 99.4 6.2E-12 1.3E-16 54.1 6.3 59 1-59 35-99 (101)
27 cd05853 Ig6_Contactin-4 Sixth 99.4 2.9E-12 6.3E-17 53.6 5.0 59 2-60 20-82 (85)
28 cd05725 Ig3_Robo Third immunog 99.4 7.4E-12 1.6E-16 50.3 5.9 53 3-59 17-69 (69)
29 cd05760 Ig2_PTK7 Second immuno 99.4 1.1E-11 2.3E-16 50.9 6.5 51 2-54 16-67 (77)
30 cd05750 Ig_Pro_neuregulin Immu 99.4 9.3E-12 2E-16 50.6 6.2 55 2-56 17-74 (75)
31 cd04972 Ig_TrkABC_d4 Fourth do 99.4 2.7E-11 5.8E-16 51.0 7.7 58 2-59 33-90 (90)
32 cd05851 Ig3_Contactin-1 Third 99.4 9.9E-12 2.1E-16 52.2 6.3 54 3-60 35-88 (88)
33 cd05865 Ig1_NCAM-1 First immun 99.4 2.3E-11 4.9E-16 51.9 7.2 57 3-59 35-95 (96)
34 cd04973 Ig1_FGFR First immunog 99.4 1.1E-11 2.4E-16 51.1 6.1 54 2-59 26-79 (79)
35 cd05876 Ig3_L1-CAM Third immun 99.4 6.8E-12 1.5E-16 50.8 5.3 55 3-60 17-71 (71)
36 cd05857 Ig2_FGFR Second immuno 99.3 3.1E-11 6.7E-16 50.1 7.3 58 2-59 27-85 (85)
37 cd05868 Ig4_NrCAM Fourth immun 99.3 1.5E-11 3.3E-16 50.4 6.3 57 2-60 19-76 (76)
38 cd04976 Ig2_VEGFR Second immun 99.3 1.2E-11 2.6E-16 50.1 5.9 54 2-59 16-69 (71)
39 cd04978 Ig4_L1-NrCAM_like Four 99.3 2.1E-11 4.6E-16 49.7 6.7 56 3-60 20-76 (76)
40 cd04970 Ig6_Contactin_like Six 99.3 7E-12 1.5E-16 52.2 5.1 58 2-59 20-81 (85)
41 cd05869 Ig5_NCAM-1 Fifth immun 99.3 2.8E-11 6.1E-16 51.5 7.0 45 15-59 53-97 (97)
42 cd05764 Ig_2 Subgroup of the i 99.3 2.4E-11 5.2E-16 49.4 6.4 52 5-59 23-74 (74)
43 cd05732 Ig5_NCAM-1_like Fifth 99.3 2.5E-11 5.5E-16 51.4 6.7 45 15-59 52-96 (96)
44 cd05726 Ig4_Robo Fhird immunog 99.3 1.6E-11 3.5E-16 51.6 5.8 44 13-59 38-81 (90)
45 cd05891 Ig_M-protein_C C-termi 99.3 5.4E-11 1.2E-15 50.3 7.2 58 2-59 34-92 (92)
46 cd05728 Ig4_Contactin-2-like F 99.3 2.5E-11 5.4E-16 50.6 6.1 54 2-59 32-85 (85)
47 cd05864 Ig2_VEGFR-2 Second imm 99.3 2E-11 4.4E-16 49.4 5.2 52 2-58 16-67 (70)
48 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 3.2E-11 7E-16 49.1 5.8 56 2-60 16-74 (74)
49 cd05740 Ig_CEACAM_D4 Fourth im 99.3 6.7E-11 1.5E-15 50.0 6.8 55 2-59 35-90 (91)
50 cd04968 Ig3_Contactin_like Thi 99.3 9E-11 1.9E-15 49.1 6.8 35 26-60 54-88 (88)
51 cd05895 Ig_Pro_neuregulin-1 Im 99.3 9.7E-11 2.1E-15 47.8 6.8 55 2-56 17-75 (76)
52 cd05731 Ig3_L1-CAM_like Third 99.3 2.5E-11 5.3E-16 48.9 4.9 35 26-60 37-71 (71)
53 cd05870 Ig5_NCAM-2 Fifth immun 99.3 1E-10 2.2E-15 49.9 6.7 46 14-59 53-98 (98)
54 cd05863 Ig2_VEGFR-3 Second imm 99.3 3.3E-11 7.2E-16 48.5 4.8 50 2-59 16-65 (67)
55 cd05773 Ig8_hNephrin_like Eigh 99.2 3.2E-10 7E-15 49.3 7.6 58 2-59 41-104 (109)
56 cd05757 Ig2_IL1R_like Second i 99.2 2.6E-10 5.6E-15 48.4 7.1 51 2-56 33-83 (92)
57 cd05856 Ig2_FGFRL1-like Second 99.2 6.1E-11 1.3E-15 48.8 5.0 55 3-59 28-82 (82)
58 cd04974 Ig3_FGFR Third immunog 99.2 1.1E-10 2.4E-15 49.1 4.1 36 25-60 55-90 (90)
59 cd05724 Ig2_Robo Second immuno 99.1 4.3E-10 9.3E-15 46.7 5.6 53 3-58 31-85 (86)
60 cd04977 Ig1_NCAM-1_like First 99.1 2.4E-09 5.3E-14 45.3 7.7 53 6-58 37-91 (92)
61 cd05848 Ig1_Contactin-5 First 99.1 1.3E-09 2.8E-14 46.3 6.9 50 2-53 37-87 (94)
62 cd05756 Ig1_IL1R_like First im 99.1 7.5E-10 1.6E-14 47.1 6.1 34 26-59 61-94 (94)
63 KOG3513|consensus 99.1 2.7E-10 5.9E-15 63.5 5.6 56 2-60 459-514 (1051)
64 cd05758 Ig5_KIRREL3-like Fifth 99.1 1.8E-09 3.9E-14 46.1 7.0 56 2-57 35-97 (98)
65 cd05858 Ig3_FGFR-2 Third immun 99.1 2.3E-10 5.1E-15 48.1 4.1 36 25-60 55-90 (90)
66 cd05739 Ig3_RPTP_IIa_LAR_like 99.1 1.5E-09 3.3E-14 43.8 5.7 50 2-57 19-68 (69)
67 cd05850 Ig1_Contactin-2 First 99.1 3.9E-09 8.4E-14 44.8 7.3 52 2-57 37-92 (94)
68 cd05733 Ig6_L1-CAM_like Sixth 99.1 1.3E-09 2.8E-14 44.7 5.2 50 2-53 16-71 (77)
69 cd05765 Ig_3 Subgroup of the i 99.1 1.2E-09 2.5E-14 44.9 4.9 35 25-59 47-81 (81)
70 cd05729 Ig2_FGFR_like Second i 99.0 8.2E-09 1.8E-13 42.5 7.2 57 3-59 28-85 (85)
71 cd05742 Ig1_VEGFR_like First i 99.0 4.3E-09 9.2E-14 43.7 5.6 35 25-59 49-83 (84)
72 cd07702 Ig2_VEGFR-1 Second imm 99.0 4.5E-09 9.7E-14 42.8 5.5 49 2-54 16-65 (72)
73 cd05874 Ig6_NrCAM Sixth immuno 99.0 4.8E-09 1E-13 43.1 5.4 51 2-54 16-72 (77)
74 cd07693 Ig1_Robo First immunog 99.0 1.4E-08 3E-13 43.0 6.8 28 32-59 71-99 (100)
75 cd05734 Ig7_DSCAM Seventh immu 99.0 8.8E-09 1.9E-13 42.3 5.9 42 14-58 36-78 (79)
76 KOG3513|consensus 99.0 5.7E-09 1.2E-13 58.5 6.7 56 1-60 363-421 (1051)
77 cd04967 Ig1_Contactin First Ig 99.0 7.8E-09 1.7E-13 43.5 5.7 47 3-53 38-87 (91)
78 cd05722 Ig1_Neogenin First imm 99.0 9.4E-09 2E-13 43.6 5.9 55 2-59 32-95 (95)
79 cd05849 Ig1_Contactin-1 First 98.9 1.9E-08 4.1E-13 42.7 6.6 52 2-57 37-91 (93)
80 cd05897 Ig2_IL1R2_like Second 98.9 2.7E-08 5.9E-13 42.5 6.5 48 2-51 33-81 (95)
81 KOG4194|consensus 98.9 7.2E-09 1.6E-13 56.0 5.2 56 2-59 645-703 (873)
82 cd05873 Ig_Sema4D_like Immunog 98.9 2.8E-08 6.1E-13 41.8 6.0 42 2-47 28-70 (87)
83 cd05862 Ig1_VEGFR First immuno 98.9 9E-09 2E-13 43.1 4.5 35 25-59 50-84 (86)
84 cd05861 Ig1_PDGFR-alphabeta Fr 98.9 2E-08 4.4E-13 41.8 5.3 36 24-59 45-82 (84)
85 cd05875 Ig6_hNeurofascin_like 98.9 6.3E-08 1.4E-12 39.8 6.4 51 2-54 16-72 (77)
86 smart00409 IG Immunoglobulin. 98.9 1.7E-07 3.8E-12 38.0 8.1 53 7-59 33-85 (86)
87 smart00410 IG_like Immunoglobu 98.9 1.7E-07 3.8E-12 38.0 8.1 53 7-59 33-85 (86)
88 cd05898 Ig5_KIRREL3 Fifth immu 98.8 8.3E-08 1.8E-12 41.2 6.8 45 13-57 48-97 (98)
89 PHA02826 IL-1 receptor-like pr 98.7 1.3E-07 2.9E-12 45.8 5.8 45 2-48 167-211 (227)
90 cd05886 Ig1_Nectin-1_like Firs 98.7 3.7E-07 8E-12 39.3 6.6 46 14-59 51-98 (99)
91 cd05882 Ig1_Necl-1 First (N-te 98.7 6.4E-07 1.4E-11 38.2 6.9 45 13-58 49-94 (95)
92 cd05754 Ig3_Perlecan_like Thir 98.7 1E-07 2.3E-12 39.6 4.3 32 26-57 53-84 (85)
93 cd07701 Ig1_Necl-3 First (N-te 98.7 6.5E-07 1.4E-11 38.1 6.7 47 12-59 48-95 (95)
94 cd05727 Ig2_Contactin-2-like S 98.6 6.5E-08 1.4E-12 41.4 3.5 47 3-51 38-86 (96)
95 cd05718 Ig1_PVR_like First imm 98.6 1.6E-06 3.5E-11 36.7 7.7 37 24-60 61-98 (98)
96 cd05713 Ig_MOG_like Immunoglob 98.6 8.5E-07 1.8E-11 37.8 6.6 37 23-59 63-99 (100)
97 cd04979 Ig_Semaphorin_C Immuno 98.6 6.7E-07 1.5E-11 37.4 5.8 34 26-59 52-86 (89)
98 cd05900 Ig_Aggrecan Immunoglob 98.6 6.4E-07 1.4E-11 39.3 5.7 46 14-59 60-108 (112)
99 cd05877 Ig_LP_like Immunoglobu 98.6 8.5E-07 1.8E-11 38.2 6.0 46 14-59 56-102 (106)
100 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 1.2E-06 2.7E-11 38.0 6.3 33 26-58 71-103 (104)
101 smart00408 IGc2 Immunoglobulin 98.5 7E-07 1.5E-11 34.3 4.9 24 26-49 40-63 (63)
102 cd05888 Ig1_Nectin-4_like Frst 98.5 1.2E-06 2.7E-11 37.5 5.6 47 14-60 51-100 (100)
103 cd05872 Ig_Sema4B_like Immunog 98.5 1E-06 2.2E-11 37.0 5.1 52 2-57 28-80 (85)
104 cd05714 Ig_CSPGs_LP Immunoglob 98.5 9.6E-07 2.1E-11 38.1 5.2 37 23-59 66-102 (106)
105 cd05749 Ig2_Tyro3_like Second 98.5 6.4E-07 1.4E-11 37.2 4.3 44 2-53 32-75 (81)
106 cd05717 Ig1_Necl-1-3_like Firs 98.5 3.4E-06 7.4E-11 35.7 6.3 45 14-59 50-95 (95)
107 cd05871 Ig_Semaphorin_classIII 98.4 1.5E-06 3.3E-11 36.7 5.0 34 26-59 54-88 (91)
108 cd05878 Ig_Aggrecan_like Immun 98.4 4.8E-06 1E-10 36.4 5.7 37 23-59 70-106 (110)
109 PHA02785 IL-beta-binding prote 98.4 5.9E-06 1.3E-10 42.0 6.6 34 26-59 83-116 (326)
110 cd05771 IgC_Tapasin_R Tapasin- 98.3 2.1E-06 4.6E-11 38.7 4.5 34 26-59 2-35 (139)
111 cd05879 Ig_P0 Immunoglobulin ( 98.3 8.8E-06 1.9E-10 36.0 6.2 36 14-49 67-104 (116)
112 cd05774 Ig_CEACAM_D1 First imm 98.3 9.8E-06 2.1E-10 35.2 6.1 42 14-58 62-104 (105)
113 cd05887 Ig1_Nectin-3_like Firs 98.3 8.1E-06 1.7E-10 35.0 5.7 47 14-60 48-96 (96)
114 cd07690 Ig1_CD4 First immunogl 98.3 2.1E-06 4.6E-11 36.6 3.7 30 22-51 62-91 (94)
115 cd05881 Ig1_Necl-2 First (N-te 98.3 2.2E-05 4.7E-10 33.6 7.6 36 12-47 48-84 (95)
116 PHA02826 IL-1 receptor-like pr 98.3 2.9E-06 6.4E-11 41.3 4.5 34 26-59 99-132 (227)
117 cd05901 Ig_Versican Immunoglob 98.3 2E-05 4.3E-10 35.0 6.6 37 23-59 77-113 (117)
118 cd05860 Ig4_SCFR Fourth immuno 98.3 1E-05 2.2E-10 35.0 5.6 36 25-60 65-100 (101)
119 cd05752 Ig1_FcgammaR_like Frst 98.3 1.6E-06 3.5E-11 35.7 2.9 21 26-47 48-68 (78)
120 PF00047 ig: Immunoglobulin do 98.3 8.3E-07 1.8E-11 34.8 2.0 18 27-44 47-64 (64)
121 PHA02785 IL-beta-binding prote 98.3 1.2E-05 2.7E-10 40.8 6.5 27 26-52 293-319 (326)
122 cd05845 Ig2_L1-CAM_like Second 98.2 2.3E-06 5E-11 36.6 3.1 39 10-51 46-85 (95)
123 cd05775 Ig_SLAM-CD84_like_N N- 98.2 1.2E-05 2.6E-10 34.3 5.2 37 23-59 59-96 (97)
124 cd05902 Ig_Neurocan Immunoglob 98.2 1.8E-05 3.8E-10 34.7 5.7 46 14-59 58-106 (110)
125 PHA02633 hypothetical protein; 98.2 1.6E-05 3.5E-10 31.5 4.9 34 26-59 19-52 (63)
126 cd05741 Ig_CEACAM_D1_like Firs 98.2 2.4E-05 5.1E-10 32.7 5.7 42 14-58 49-91 (92)
127 KOG4222|consensus 98.2 5.9E-06 1.3E-10 47.5 4.7 54 3-59 166-222 (1281)
128 KOG4221|consensus 98.2 9E-06 1.9E-10 47.1 5.2 57 1-59 269-325 (1381)
129 cd05753 Ig2_FcgammaR_like Seco 98.2 3.9E-06 8.5E-11 34.9 3.0 26 26-51 49-74 (83)
130 cd00099 IgV Immunoglobulin var 98.1 1.6E-05 3.4E-10 34.0 4.5 37 13-49 53-91 (105)
131 cd04983 IgV_TCR_alpha_like Imm 98.1 2.2E-05 4.7E-10 33.9 4.9 36 13-48 56-93 (109)
132 PF07686 V-set: Immunoglobulin 98.1 5.3E-05 1.1E-09 32.4 6.0 46 14-59 66-114 (114)
133 PF07354 Sp38: Zona-pellucida- 98.1 8.7E-06 1.9E-10 40.3 3.5 44 1-47 16-59 (271)
134 cd05846 Ig1_MRC-OX-2_like Firs 98.1 3.5E-05 7.6E-10 32.8 5.0 38 23-60 59-97 (97)
135 cd04984 IgV_L_lambda Immunoglo 98.0 4.8E-05 1E-09 32.4 4.9 34 13-46 51-84 (98)
136 cd05759 Ig2_KIRREL3-like Secon 98.0 9.3E-05 2E-09 30.4 5.3 25 26-50 47-71 (82)
137 cd04980 IgV_L_kappa Immunoglob 97.9 5.5E-05 1.2E-09 32.6 4.2 34 14-47 60-93 (106)
138 KOG4221|consensus 97.9 7.9E-05 1.7E-09 43.6 5.5 46 2-50 173-218 (1381)
139 cd04982 IgV_TCR_gamma Immunogl 97.9 0.00011 2.4E-09 32.1 5.1 34 13-46 63-98 (116)
140 cd05712 Ig_Siglec_N Immunoglob 97.9 0.00011 2.5E-09 32.4 5.1 34 14-47 67-102 (119)
141 PF13927 Ig_3: Immunoglobulin 97.9 3.4E-05 7.3E-10 30.7 3.1 22 25-46 54-75 (75)
142 cd05880 Ig_EVA1 Immunoglobulin 97.9 6.8E-05 1.5E-09 33.0 4.2 27 23-49 77-103 (115)
143 cd05715 Ig_P0-like Immunoglobu 97.9 7.4E-05 1.6E-09 32.8 4.3 26 24-49 79-104 (116)
144 smart00406 IGv Immunoglobulin 97.8 5.7E-05 1.2E-09 30.6 3.6 31 13-43 48-80 (81)
145 cd05889 Ig1_DNAM-1_like First 97.8 0.00036 7.8E-09 30.0 6.6 44 14-57 48-93 (96)
146 cd05899 IgV_TCR_beta Immunoglo 97.8 8.7E-05 1.9E-09 32.2 4.1 35 13-47 59-94 (110)
147 cd05720 Ig_CD8_alpha Immunoglo 97.8 9.5E-05 2.1E-09 31.9 4.0 34 13-46 57-90 (104)
148 PF13895 Ig_2: Immunoglobulin 97.7 0.00014 3E-09 29.3 3.4 33 27-59 47-80 (80)
149 PHA03376 BARF1; Provisional 97.6 0.0011 2.3E-08 32.1 6.3 33 15-47 77-109 (221)
150 cd05885 Ig2_Necl-4 Second immu 97.6 0.00018 3.9E-09 29.9 3.4 49 2-50 18-68 (80)
151 cd07706 IgV_TCR_delta Immunogl 97.6 0.00025 5.5E-09 31.0 4.0 34 13-46 58-93 (116)
152 cd07700 IgV_CD8_beta Immunoglo 97.4 0.00053 1.1E-08 29.7 3.9 33 14-46 59-93 (107)
153 PHA02987 Ig domain OX-2-like p 97.4 0.002 4.3E-08 30.9 5.8 45 14-58 73-120 (189)
154 cd05716 Ig_pIgR Immunoglobulin 97.4 0.00043 9.2E-09 29.4 3.4 35 13-47 50-86 (98)
155 KOG4222|consensus 97.3 0.00032 6.9E-09 41.0 3.2 45 13-59 268-312 (1281)
156 cd05751 Ig1_LILRB1_like First 97.3 0.00069 1.5E-08 28.5 3.1 22 26-47 54-75 (91)
157 cd04981 IgV_H Immunoglobulin ( 96.9 0.0046 9.9E-08 27.3 4.2 33 14-46 63-97 (117)
158 KOG4194|consensus 96.8 0.0034 7.4E-08 35.3 3.8 51 3-55 741-791 (873)
159 cd00096 Ig Immunoglobulin doma 96.7 0.0073 1.6E-07 22.8 4.6 24 25-48 43-66 (74)
160 PF11465 Receptor_2B4: Natural 96.2 0.034 7.4E-07 24.5 4.6 37 14-52 62-98 (108)
161 KOG1480|consensus 96.2 0.0026 5.5E-08 36.3 1.0 47 2-51 163-209 (909)
162 cd05711 Ig_FcalphaRI Immunoglo 96.0 0.018 3.8E-07 24.5 3.0 20 26-45 56-75 (94)
163 cd05761 Ig2_Necl-1-4_like Seco 95.7 0.042 9E-07 22.7 3.5 24 27-50 47-70 (82)
164 cd00098 IgC Immunoglobulin Con 95.6 0.014 3E-07 24.4 2.0 23 27-49 64-86 (95)
165 cd07705 Ig2_Necl-1 Second immu 95.5 0.063 1.4E-06 22.3 5.0 48 1-49 17-70 (83)
166 PF08204 V-set_CD47: CD47 immu 95.5 0.025 5.4E-07 25.8 2.5 34 25-59 86-119 (130)
167 cd07694 Ig2_CD4 Second immunog 95.3 0.084 1.8E-06 22.5 5.0 22 26-47 52-73 (88)
168 PHA02982 hypothetical protein; 94.5 0.26 5.6E-06 24.6 4.6 37 14-50 89-125 (251)
169 cd05884 Ig2_Necl-3 Second immu 94.5 0.15 3.2E-06 21.2 4.2 24 26-49 47-70 (83)
170 cd05883 Ig2_Necl-2 Second immu 93.7 0.24 5.2E-06 20.8 5.3 24 26-49 45-68 (82)
171 KOG4597|consensus 92.3 0.36 7.8E-06 26.8 3.4 33 25-57 257-289 (560)
172 cd07692 Ig_CD3_epsilon Immunog 91.4 0.52 1.1E-05 19.1 3.4 17 30-47 40-56 (65)
173 cd07691 Ig_CD3_gamma_delta Imm 89.9 0.73 1.6E-05 18.9 2.5 21 26-46 34-54 (69)
174 PF06214 SLAM: Signaling lymph 89.5 1.2 2.6E-05 20.1 3.3 32 12-45 92-123 (126)
175 cd05721 IgV_CTLA-4 Immunoglobu 89.4 1.2 2.6E-05 20.1 3.8 24 23-46 72-95 (115)
176 cd05755 Ig2_ICAM-1_like Second 89.2 1.1 2.5E-05 19.5 3.3 24 26-50 63-87 (100)
177 PHA02914 Immunoglobulin-like d 87.8 0.52 1.1E-05 25.8 1.8 26 25-50 346-371 (500)
178 cd07698 IgC_MHC_I_alpha3 Class 87.3 1.5 3.1E-05 18.5 3.9 17 31-47 66-82 (93)
179 PHA03042 CD47-like protein; Pr 84.6 1.8 3.8E-05 22.6 2.6 21 34-54 79-99 (286)
180 cd05770 IgC_beta2m Class I maj 82.6 2.9 6.2E-05 17.9 4.1 16 32-47 67-82 (93)
181 cd05766 IgC_MHC_II_beta Class 82.1 3 6.5E-05 17.8 4.1 15 33-47 68-82 (94)
182 smart00407 IGc1 Immunoglobulin 81.6 2.7 5.8E-05 16.9 5.0 21 27-47 50-70 (75)
183 cd05767 IgC_MHC_II_alpha Class 81.6 3.2 7E-05 17.8 3.4 14 34-47 70-83 (94)
184 PHA03189 UL14 tegument protein 78.7 5.7 0.00012 21.2 3.2 21 31-51 139-159 (348)
185 PF07654 C1-set: Immunoglobuli 77.5 4.1 9E-05 16.6 2.5 14 34-47 63-76 (83)
186 KOG3515|consensus 74.5 9.6 0.00021 22.9 3.7 30 27-56 460-489 (741)
187 PHA03283 envelope glycoprotein 73.0 16 0.00034 21.1 5.1 35 25-59 134-168 (542)
188 PHA03240 envelope glycoprotein 71.7 8.1 0.00018 19.6 2.7 35 14-50 96-130 (258)
189 cd05772 IgC_SIRP Signal-regula 71.6 7.9 0.00017 17.1 5.5 9 39-47 83-91 (111)
190 cd07699 IgC_L Immunoglobulin C 64.3 11 0.00024 16.2 3.8 12 36-47 77-88 (100)
191 cd07703 Ig2_Nectin-2_like Seco 57.2 16 0.00035 15.7 3.6 24 26-49 60-83 (95)
192 PF05790 C2-set: Immunoglobuli 56.0 16 0.00035 15.3 6.8 25 26-50 44-69 (80)
193 cd05768 IgC_CH4 CH4 domain (fo 54.9 18 0.0004 15.6 3.2 12 36-47 79-90 (102)
194 cd05719 Ig2_PVR_like Second im 54.7 18 0.00039 15.5 4.1 24 26-49 60-83 (95)
195 PF01688 Herpes_gI: Alphaherpe 54.4 25 0.00054 17.0 4.4 22 26-47 125-146 (161)
196 PF15096 G6B: G6B family 54.2 16 0.00034 18.3 1.9 16 32-47 81-96 (224)
197 PF13540 RCC1_2: Regulator of 53.0 11 0.00024 12.4 1.6 13 37-49 17-29 (30)
198 PHA03282 envelope glycoprotein 52.3 45 0.00098 19.3 4.8 19 26-44 125-143 (540)
199 cd05847 IgC_CH2_IgE CH2 domain 48.5 24 0.00052 15.1 4.7 13 36-48 74-86 (94)
200 PHA03286 envelope glycoprotein 41.9 70 0.0015 18.5 4.5 34 26-59 128-162 (492)
201 PF02480 Herpes_gE: Alphaherpe 40.7 70 0.0015 18.2 3.8 24 26-49 270-294 (439)
202 PHA03290 envelope glycoprotein 40.1 66 0.0014 17.7 4.6 21 26-46 130-150 (357)
203 PF11781 RRN7: RNA polymerase 38.6 19 0.0004 12.7 0.7 12 32-43 18-29 (36)
204 PHA03292 envelope glycoprotein 36.6 82 0.0018 17.8 4.4 22 26-47 129-150 (413)
205 PHA03289 envelope glycoprotein 36.4 77 0.0017 17.4 4.5 22 26-47 123-144 (352)
206 PF10430 Ig_Tie2_1: Tie-2 Ig-l 34.1 49 0.0011 14.5 3.3 15 34-48 72-87 (96)
207 PF13220 DUF4028: Protein of u 33.5 39 0.00086 13.2 1.8 13 37-49 10-22 (65)
208 PF03038 Herpes_UL95: UL95 fam 31.7 74 0.0016 17.6 2.4 30 14-43 35-64 (348)
209 cd05769 IgC_TCR_beta T cell re 29.2 66 0.0014 14.4 3.5 11 37-47 81-91 (115)
210 PF01034 Syndecan: Syndecan do 28.7 13 0.00028 15.1 -0.5 16 27-42 31-46 (64)
211 PHA03291 envelope glycoprotein 28.4 1.2E+02 0.0025 17.1 4.4 22 26-47 130-151 (401)
212 PHA03281 envelope glycoprotein 25.9 1.6E+02 0.0034 17.7 4.8 34 26-59 299-333 (642)
213 PRK05508 methionine sulfoxide 24.3 66 0.0014 14.8 1.3 14 33-46 27-40 (119)
214 PF05083 LST1: LST-1 protein; 24.2 73 0.0016 13.3 1.5 11 37-47 62-72 (74)
215 PRK00222 methionine sulfoxide 23.3 63 0.0014 15.4 1.2 14 33-46 37-50 (142)
216 cd07697 IgC_TCR_gamma T cell r 23.1 84 0.0018 13.6 3.6 9 38-46 75-83 (96)
217 TIGR00357 methionine-R-sulfoxi 21.5 72 0.0016 15.0 1.1 14 33-46 34-47 (134)
218 cd00501 Peptidase_C15 Pyroglut 21.0 55 0.0012 16.0 0.8 10 34-43 134-143 (194)
219 KOG0856|consensus 20.5 1E+02 0.0022 14.8 1.5 13 34-46 49-61 (146)
No 1
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.62 E-value=1.8e-14 Score=58.70 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=48.6
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++....++.+......+.|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 17 ~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 17 TWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 4667788887777887766555668999999999999999999999999888887764
No 2
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.60 E-value=2.9e-14 Score=60.95 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=50.2
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++.+..++.+......+.|.|.++...|.|.|+|.+.|..|...+.+.|.|
T Consensus 33 ~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V 90 (98)
T cd05762 33 TWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTV 90 (98)
T ss_pred EEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEE
Confidence 4678888998777887766555678999999999999999999999999999888876
No 3
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.57 E-value=5.9e-14 Score=57.53 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=46.4
Q ss_pred cccCCceecCC-CCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNS-SNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.+++.++.. .+++++... .+.+.|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 16 ~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 16 FWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred EEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 46677888864 467776543 33357999999999999999999999999999888864
No 4
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.57 E-value=2.3e-14 Score=58.43 Aligned_cols=55 Identities=31% Similarity=0.428 Sum_probs=45.3
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.+++.++.+..++.+.. .+ .|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 19 ~W~k~~~~l~~~~r~~~~~-~g--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 19 SWSKGTELLVNNSRISIWD-DG--SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred EEEeCCEecccCCCEEEcC-CC--EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 4566777777777877754 33 6999999999999999999999999999888864
No 5
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.54 E-value=1.7e-13 Score=55.48 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=44.2
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|-++|.++.+..++++...+. |.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 17 ~W~k~g~~~~~~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 17 KWVKNGDMVIPSDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEECCeECCCCCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 3556777777767777655443 888899999999999999999999998888764
No 6
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.54 E-value=2.9e-13 Score=56.69 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=47.3
Q ss_pred cccCCceecCCC-CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.+++.++... .++.+......+.|.|.++...|.|.|.|.+.|..|.......|.|
T Consensus 28 ~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 28 TWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred EEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 466778888653 5777765555568999999999999999999999999888877764
No 7
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.53 E-value=3.7e-13 Score=55.10 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=45.6
Q ss_pred cccCCceecCC-CCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNS-SNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.+++.++.. ..++.+... .+.+.|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 16 ~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 16 FWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred EEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 46677888864 456666433 34456999999999999999999999999998888764
No 8
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.52 E-value=3.6e-13 Score=55.20 Aligned_cols=58 Identities=26% Similarity=0.365 Sum_probs=45.3
Q ss_pred cccCCceecCC-CCCEEEEEeC-CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNS-SNILDLKYKN-GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.+++.++.. ..++.+.... +...|.|.++...|.|.|.|.|.|..|.....+.|.|
T Consensus 16 ~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 16 FWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 46677777764 4566665433 3346999999999999999999999999999888864
No 9
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.50 E-value=1.8e-13 Score=55.81 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=43.7
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++....++.+.. .+ .|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 20 ~W~k~g~~~~~~~~~~~~~-~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 20 AWTKGGSQLSVDRRHLVLS-SG--TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred EEEECCEECCCCCCeEEcc-CC--eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 4566777776665655533 33 6999999999999999999999999998888764
No 10
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.50 E-value=5.4e-13 Score=56.38 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=46.7
Q ss_pred cccCCceecCCCCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++...+++.+... +....|.|.++...|+|.|.|.+.|.+|.......+.|
T Consensus 34 ~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 34 SWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 46678888877777776543 33457999999999999999999999999888777654
No 11
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.49 E-value=2.2e-13 Score=54.92 Aligned_cols=53 Identities=26% Similarity=0.449 Sum_probs=43.0
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l 57 (60)
.|.++|.++.+..++.+.. .+ .|.|.++...|.|.|.|.+.|.+|.....+.|
T Consensus 16 ~W~k~g~~~~~~~~~~~~~-~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 16 TWNKDGVQVTESGKFHISP-EG--YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred EEEECCEECCCCCCEEECC-CC--EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 3556778887777777643 23 69999999999999999999999998887765
No 12
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.48 E-value=3.5e-13 Score=54.78 Aligned_cols=54 Identities=33% Similarity=0.417 Sum_probs=44.1
Q ss_pred ccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
|.+++.++....++++...+ .|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 20 W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 20 WSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred EEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 45667777777777764333 5999999999999999999999999999888764
No 13
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.47 E-value=1.4e-12 Score=55.05 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=45.7
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l 57 (60)
.|.++|.++....++.+......+.|.|.++..+|.|.|.|.+.|..|.......|
T Consensus 36 ~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 36 TWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 45667778877778877654445689999999999999999999999998887665
No 14
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.47 E-value=9e-13 Score=55.17 Aligned_cols=58 Identities=38% Similarity=0.548 Sum_probs=51.1
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++....++.+......+.|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 33 ~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 33 TWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred cccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 3566788888888998887778889999999999999999999999999998888865
No 15
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.47 E-value=1.9e-12 Score=53.71 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=43.5
Q ss_pred cccCCceecCCCCCEEEEEe-------CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYK-------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++.+..+...... .....|.|.++...|.|.|+|.|.|..|.......+..
T Consensus 16 ~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 16 TWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 46778888876655433211 12336999999999999999999999999888776653
No 16
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.46 E-value=1.6e-12 Score=55.90 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=45.2
Q ss_pred cccCCceecCCCCCEEEEEeC-----CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|-++|.+|.......+...+ -...|.|..+..+|.|.|+|.|.|..|.....+.|.|
T Consensus 37 ~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V 99 (101)
T cd04975 37 NWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYV 99 (101)
T ss_pred EEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEE
Confidence 577889899765454333221 1246999999999999999999999999988888876
No 17
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.44 E-value=4.7e-12 Score=53.21 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=45.2
Q ss_pred cccCCceecCCC-CCEEEEEe--C--CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 2 KHDNSTIPLNSS-NILDLKYK--N--GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~--~--~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
+|.+++.++... .++.+... + ..+.|.|.++...|.|.|.|.|.|.+|.....+.|.|.
T Consensus 19 ~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~ 82 (88)
T cd05735 19 RWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQ 82 (88)
T ss_pred EEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEe
Confidence 466777777543 46665431 1 11469999999999999999999999999998888763
No 18
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.44 E-value=2e-12 Score=53.19 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=43.7
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l 57 (60)
.|.+++.++....++.+........|.|.++..+|.|.|.|.+.|..|.....+.+
T Consensus 19 ~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 19 NWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred EEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 34566667766677777655555689999999999999999999999987665544
No 19
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.43 E-value=3.9e-12 Score=53.16 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=43.7
Q ss_pred cccCCceecCCC---CCEEE-EEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 2 KHDNSTIPLNSS---NILDL-KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 2 ~~~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
.|.++|.++... .++.. ........|.|.++...|.|.|+|.|.|..|.....+.|.|.
T Consensus 20 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~ 82 (85)
T cd05854 20 TWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVR 82 (85)
T ss_pred EEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEE
Confidence 466778777542 24422 211223479999999999999999999999999999988763
No 20
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.42 E-value=4.2e-12 Score=52.53 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=43.2
Q ss_pred cccCCceecCCCCCEEEE---Ee--CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLK---YK--NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~---~~--~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~ 58 (60)
.|-++|++|.+.++.... .. .....|.|..+...|.|.|+|.|.|..|.......+.
T Consensus 16 ~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 16 QWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 577889999876654221 11 1234699999999999999999999999988877654
No 21
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.42 E-value=3e-12 Score=52.32 Aligned_cols=58 Identities=26% Similarity=0.318 Sum_probs=42.5
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.+++..+.+..+..+........|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 16 ~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 16 TWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred EEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 3556677776543322222222236999999999999999999999999998888876
No 22
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.41 E-value=1e-11 Score=52.65 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=41.7
Q ss_pred CCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceE-EEEEEE
Q psy12428 5 NSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE-TKCKLT 58 (60)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~-~~~~l~ 58 (60)
+++.++....++.+...+....|.|..+..+|.|.|.|.|.|..|... ....|.
T Consensus 36 ~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~ 90 (92)
T cd05866 36 PQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 90 (92)
T ss_pred CCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence 456777766788776555456799999999999999999999999754 444443
No 23
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.41 E-value=5.8e-12 Score=51.37 Aligned_cols=45 Identities=33% Similarity=0.488 Sum_probs=36.6
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 14 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
.++++...+. .|.|.++...|.|.|.|.+.|..|.....+.|.|+
T Consensus 31 ~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 31 RRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred cceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 4455433333 69999999999999999999999999988888774
No 24
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.41 E-value=4.8e-12 Score=53.64 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=42.8
Q ss_pred cccCCceecCCC-CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++... .++.+.... ..|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 36 ~W~k~g~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 92 (95)
T cd05730 36 TWTKDGEPIESGEEKYSFNEDG--SEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92 (95)
T ss_pred EEEECCEECcCCCCEEEEeCCC--CEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 355667777654 455443222 36999999999999999999999999888888775
No 25
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=8.5e-12 Score=51.05 Aligned_cols=54 Identities=24% Similarity=0.461 Sum_probs=41.7
Q ss_pred cccCCceecCCCC---CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSN---ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++.... ++.+ ..+ .|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 19 ~W~k~g~~i~~~~~~~~~~~--~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 19 TWSINGAPIEGTDPDPRRHV--SSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred EEEECCEECCCCCCCceEEe--eCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 3556777776432 3332 233 6999999999999999999999999998888876
No 26
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.38 E-value=6.2e-12 Score=54.08 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=44.2
Q ss_pred CcccCCceecCCCCCEEEEEe------CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 1 MKHDNSTIPLNSSNILDLKYK------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+.|-++|.++.+..+...... ...+.|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 35 v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V 99 (101)
T cd05859 35 IRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQI 99 (101)
T ss_pred eEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEE
Confidence 357788888876544322211 11236999999999999999999999999888888766
No 27
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.38 E-value=2.9e-12 Score=53.64 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=44.4
Q ss_pred cccCCceecCC---CCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 2 KHDNSTIPLNS---SNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
.|.++|++|.. ..++..... .....|.|.++...|.|.|+|.+.|..+...+.+.|.|+
T Consensus 20 ~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 20 TWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred EEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 46788888862 235544211 111269999999999999999999999999999988763
No 28
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.37 E-value=7.4e-12 Score=50.34 Aligned_cols=53 Identities=32% Similarity=0.452 Sum_probs=39.5
Q ss_pred ccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
|.+++..+. ..++.+.. .. .|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 17 W~k~~~~~~-~~~~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 17 WRKEDGELP-KGRAEILD-DK--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred EEECCccCC-CCcEEEee-CC--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 344444443 34555543 33 6999999999999999999999999988887764
No 29
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.37 E-value=1.1e-11 Score=50.93 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=37.9
Q ss_pred cccCCceecCCC-CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEE
Q psy12428 2 KHDNSTIPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54 (60)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~ 54 (60)
.|.++|.++... .++.+.... ..|.|.++..+|.|.|.|.+.|..|.....
T Consensus 16 ~W~k~g~~l~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 67 (77)
T cd05760 16 QWFRDGTPLSDGQGNYSVSSKE--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSS 67 (77)
T ss_pred EEEECCEECCCCCccEEEeCCC--CEEEEeeCCcccCEEEEEEEEeCCCeEeeC
Confidence 456777777654 345553323 379999999999999999999999986543
No 30
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.37 E-value=9.3e-12 Score=50.59 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=40.4
Q ss_pred cccCCceecCCCCCEE---EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12428 2 KHDNSTIPLNSSNILD---LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 56 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~ 56 (60)
+|-++|.++....+.. +........|.|.++...|.|.|.|.+.|..|.....+.
T Consensus 17 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 17 KWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred EEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 4667777776544322 333334457999999999999999999999998776553
No 31
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.36 E-value=2.7e-11 Score=50.97 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=42.7
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|..+................|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 33 ~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 33 EWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 3556666665444433332333457999999999999999999999999988887764
No 32
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.36 E-value=9.9e-12 Score=52.20 Aligned_cols=54 Identities=26% Similarity=0.475 Sum_probs=40.9
Q ss_pred ccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
|.+++.++....++. ..+. .|.|.++...|.|.|.|.+.|..|.....+.|.|+
T Consensus 35 W~k~~~~~~~~~~~~--~~~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 35 WRKILEPMPATAEIS--MSGA--VLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred EEECCcCCCCCCEEe--cCCC--EEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 445555554433332 2333 69999999999999999999999999999888874
No 33
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.36 E-value=2.3e-11 Score=51.92 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=41.5
Q ss_pred ccC-CceecCC-CCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCC-cceEEEEEEEE
Q psy12428 3 HDN-STIPLNS-SNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSL-GTAETKCKLTV 59 (60)
Q Consensus 3 ~~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~-g~~~~~~~l~v 59 (60)
|.+ ++.++.. ..++.+... ...+.|.|.++..+|.|.|+|.|.|.. |....++.|.|
T Consensus 35 W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 35 WFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred EECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 443 6655544 445554432 223579999999999999999999997 78888887765
No 34
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.35 E-value=1.1e-11 Score=51.10 Aligned_cols=54 Identities=22% Similarity=0.489 Sum_probs=43.1
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++....++.+. +. .|.|.++..+|+|.|.|.+.|..|.......|.|
T Consensus 26 ~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 26 NWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred EEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 466788888776677653 33 6999999999999999999999998777766653
No 35
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.35 E-value=6.8e-12 Score=50.80 Aligned_cols=55 Identities=36% Similarity=0.522 Sum_probs=39.9
Q ss_pred ccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
|.+++.++... +........ .|.|.++...|.|.|.|.+.|..|.....+.|.|.
T Consensus 17 W~k~~~~~~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 17 WDRIDGPLSPN-RTKKLNNNK--TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred EEECCcCCCCC-ceeEEcCCC--EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 44455555433 222222233 79999999999999999999999999888888763
No 36
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.35 E-value=3.1e-11 Score=50.15 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=42.1
Q ss_pred cccCCceecCCCCCEE-EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILD-LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|-++|.++....+.. .........|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 27 ~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 27 RWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred EEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 3556777776544331 112223346899999999999999999999999988887764
No 37
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.35 E-value=1.5e-11 Score=50.38 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=42.4
Q ss_pred cccCCceecCCCCC-EEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 2 KHDNSTIPLNSSNI-LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
.|.++|.++...+. ......+. .|.|.++...|.|.|.|.+.|..|...+.+.|.|+
T Consensus 19 ~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 19 SWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred EEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 45667888753322 11122233 68899999999999999999999999999998874
No 38
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.35 E-value=1.2e-11 Score=50.10 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=41.0
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++....++.. .. ..|.|.++...|+|.|+|.+.|..|.......+.+
T Consensus 16 ~W~k~g~~l~~~~~~~~--~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 16 QWYKNGKLISEKNRTKK--SG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred EEEECCEECCCCCEEEc--CC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 45677888876644432 22 36999999999999999999999998776665543
No 39
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.35 E-value=2.1e-11 Score=49.66 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=41.7
Q ss_pred ccCCceecCCCCCE-EEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 3 HDNSTIPLNSSNIL-DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
|.++|.++...... ....... .|.|.++...|.|.|.|.+.|..|...+.+.|.|.
T Consensus 20 W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 20 WRLNGVPIEELPPDPRRRVDGG--TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred EEECCEECCCCCCcceEEccCC--EEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 45667777554332 2222233 69999999999999999999999999998888763
No 40
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.34 E-value=7e-12 Score=52.23 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=41.7
Q ss_pred cccCCceecCCC---CCEEEE-EeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSS---NILDLK-YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~---~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++... .++... .......|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 20 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 81 (85)
T cd04970 20 TWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIV 81 (85)
T ss_pred EEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEE
Confidence 356677777532 222211 1122336999999999999999999999999888888876
No 41
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.34 E-value=2.8e-11 Score=51.54 Aligned_cols=45 Identities=29% Similarity=0.483 Sum_probs=35.8
Q ss_pred CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 15 ~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
++.+........|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 53 ~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 53 HIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred cEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 344333333357999999999999999999999999999888764
No 42
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.33 E-value=2.4e-11 Score=49.37 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=40.0
Q ss_pred CCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 5 NSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+++..+....++.... .+ .|.|..+...|.|.|.|.+.|..|.....+.|.|
T Consensus 23 ~~~~~~~~~~~~~~~~-~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 23 PDGKLISNSSRTLVYD-NG--TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCCEEecCCCeEEEec-CC--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 4566666555555433 33 6999999999999999999999999888877764
No 43
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.33 E-value=2.5e-11 Score=51.41 Aligned_cols=45 Identities=29% Similarity=0.450 Sum_probs=35.8
Q ss_pred CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 15 ~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
++.+........|.|.++...|.|.|.|.+.|..|....++.|.|
T Consensus 52 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 52 RIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred eEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 444433334457999999999999999999999999988877754
No 44
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.32 E-value=1.6e-11 Score=51.64 Aligned_cols=44 Identities=34% Similarity=0.512 Sum_probs=36.1
Q ss_pred CCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 13 SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 13 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
..++.+.. .+ .|.|.++..+|+|.|.|.+.|..|.....+.|.|
T Consensus 38 ~~r~~v~~-~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 81 (90)
T cd05726 38 SSRFSVSQ-TG--DLTITNVQRSDVGYYICQTLNVAGSILTKAYLEV 81 (90)
T ss_pred CCeEEECC-CC--eEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 34565533 23 5999999999999999999999999888888876
No 45
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.32 E-value=5.4e-11 Score=50.34 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=43.9
Q ss_pred cccCCceecCCCCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.+++..+....++.+... .....|.|.++..+|.|.|.|.+.|.+|.......|.|
T Consensus 34 ~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 34 IWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 35556667766666655432 22346999999999999999999999999988877754
No 46
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.32 E-value=2.5e-11 Score=50.65 Aligned_cols=54 Identities=31% Similarity=0.530 Sum_probs=43.1
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++....++.. ... .|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 32 ~W~k~g~~~~~~~~~~~--~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 32 RWLKNGQPLASENRIEV--EAG--DLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred EEEECCEECCCCCeEEE--eCC--EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 35567777776666654 233 6999999999999999999999999988887764
No 47
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.30 E-value=2e-11 Score=49.43 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=38.7
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~ 58 (60)
.|.++|.++....++ . .+ ..|.|.++..+|.|.|+|.+.|..|.......+.
T Consensus 16 ~W~k~g~~l~~~~~~--~-~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~ 67 (70)
T cd05864 16 KWYKNGQLIVLNHTF--K-RG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ 67 (70)
T ss_pred EEEECCEECCCCCEE--c-cC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence 466788888654332 2 22 2699999999999999999999999766654443
No 48
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.30 E-value=3.2e-11 Score=49.14 Aligned_cols=56 Identities=34% Similarity=0.519 Sum_probs=41.3
Q ss_pred cccCCceecC--CCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcce-EEEEEEEEC
Q psy12428 2 KHDNSTIPLN--SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA-ETKCKLTVR 60 (60)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~-~~~~~l~v~ 60 (60)
.|.+++.++. ...++... ..+ .|.|.++...|.|.|.|.+.|..|.. ...+.|.|+
T Consensus 16 ~W~k~~~~~~~~~~~~~~~~-~~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 16 TWFKDFLPVDTTSNGRIKQL-RSG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred EEEECCEECccCCCCCEEEc-CCc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4556777776 34555553 233 59999999999999999999999984 566777664
No 49
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.29 E-value=6.7e-11 Score=50.01 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=40.6
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~-~~~l~v 59 (60)
.|.+++.++.. +++.+...+. .|.|.++...|.|.|.|.+.|.+|.... .+.|.|
T Consensus 35 ~W~kng~~l~~-~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 35 WWVNNGSLLVP-PRLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEECCEECCC-CCEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 45667777654 4555543333 7999999999999999999999997544 566665
No 50
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.28 E-value=9e-11 Score=49.14 Aligned_cols=35 Identities=34% Similarity=0.552 Sum_probs=32.6
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
.|.|.++..+|+|.|.|.+.|..|.....+.|.|.
T Consensus 54 ~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 54 VLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred EEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence 79999999999999999999999999998888774
No 51
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.28 E-value=9.7e-11 Score=47.85 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=38.9
Q ss_pred cccCCceecCCC----CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12428 2 KHDNSTIPLNSS----NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 56 (60)
Q Consensus 2 ~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~ 56 (60)
.|-++|.++... .++.+........|.|.++...|+|.|.|.+.|..|....++.
T Consensus 17 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 17 KWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred EEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 355667777532 2334433333457999999999999999999999998776543
No 52
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.28 E-value=2.5e-11 Score=48.87 Aligned_cols=35 Identities=49% Similarity=0.763 Sum_probs=32.2
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
.|.|.++...|.|.|.|.+.|..|.......|.|+
T Consensus 37 ~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 37 TLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred EEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 69999999999999999999999999888888764
No 53
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.27 E-value=1e-10 Score=49.92 Aligned_cols=46 Identities=28% Similarity=0.505 Sum_probs=37.2
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 14 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.++.+........|.|.++..+|.|.|.|.+.|.+|.....+.|.|
T Consensus 53 ~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 53 GRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred ceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 4666644334457999999999999999999999999888877754
No 54
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.26 E-value=3.3e-11 Score=48.46 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=37.1
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|-++|+++... .....|.|.++..+|.|.|+|.+.|..|.......+.+
T Consensus 16 ~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 16 QWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred EEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 355667676421 11236999999999999999999999998777666554
No 55
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.23 E-value=3.2e-10 Score=49.31 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=42.5
Q ss_pred cccCCceecCC-CCCEEEEEeC----CEEEEEEccCC-CCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIPLNS-SNILDLKYKN----GVASLQIQEVF-PEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~----~~~~l~i~~~~-~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.++|.++.. ..++...... ....|.|.++. ..|.|.|.|.|.|.+|.......|.+
T Consensus 41 ~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~ 104 (109)
T cd05773 41 RWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVS 104 (109)
T ss_pred EEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEe
Confidence 46678888764 3455543211 12469999987 69999999999999999888887765
No 56
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.23 E-value=2.6e-10 Score=48.36 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=38.4
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 56 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~ 56 (60)
.|.+++.++....+.. . .+. .|.|.++..+|.|.|+|.+.|..+.......
T Consensus 33 ~Wyk~~~~i~~~~~~~-~-~~~--~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 33 QWYKDCKLLEGDRKRF-V-KGS--KLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred EEeECCEECCCCccEE-e-cCC--EEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 5677888887654433 2 333 6999999999999999999999887655443
No 57
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.23 E-value=6.1e-11 Score=48.78 Aligned_cols=55 Identities=25% Similarity=0.460 Sum_probs=38.5
Q ss_pred ccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
|.+++..+........ ......|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 28 W~k~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 28 WLKDNKPLTPTEIGES--RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred EEECCcCCcCCcccee--cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 4455555543322222 122347999999999999999999999998887776653
No 58
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.16 E-value=1.1e-10 Score=49.13 Aligned_cols=36 Identities=36% Similarity=0.521 Sum_probs=32.9
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
..|.|.++...|.|.|.|.|.|..|...+.+.|.|+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~ 90 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence 368999999999999999999999999999998874
No 59
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.14 E-value=4.3e-10 Score=46.70 Aligned_cols=53 Identities=34% Similarity=0.540 Sum_probs=38.2
Q ss_pred ccCCceecCC-CCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceE-EEEEEE
Q psy12428 3 HDNSTIPLNS-SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE-TKCKLT 58 (60)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~-~~~~l~ 58 (60)
|.++|.++.. ..++.+.. .+ .|.|.++...|.|.|.|.+.|..|... ..+.|.
T Consensus 31 W~k~g~~~~~~~~~~~~~~-~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 31 WRKDGQPLNLDNERVRIVD-DG--NLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred EEECCEECCCCCCCEEEcc-CC--EEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 4556666655 44555543 23 699999999999999999999999754 344544
No 60
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.13 E-value=2.4e-09 Score=45.26 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=36.9
Q ss_pred CceecCCCCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcc-eEEEEEEE
Q psy12428 6 STIPLNSSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGT-AETKCKLT 58 (60)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~g~-~~~~~~l~ 58 (60)
++.++....++.+... .....|.|.++..+|.|.|.|.+.|.+|. ...+..|.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 37 NGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred CCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 4555554455544332 33457999999999999999999999764 45555554
No 61
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.13 E-value=1.3e-09 Score=46.28 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=35.1
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCC-CCCCeEEEEEEEcCCcceEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTATNSLGTAET 53 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~~~n~~g~~~~ 53 (60)
.|.++|.++.....+.+...++ .|.|.++. ..|.|.|.|.+.|..|....
T Consensus 37 ~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 37 RWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred EEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 3556777776443333333334 58888875 69999999999999998754
No 62
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.13 E-value=7.5e-10 Score=47.08 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=30.7
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.|.++..+|+|.|.|.+.|..|.....+.|.|
T Consensus 61 ~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 61 LLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred eEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 6999999999999999999999999888777754
No 63
>KOG3513|consensus
Probab=99.12 E-value=2.7e-10 Score=63.48 Aligned_cols=56 Identities=30% Similarity=0.414 Sum_probs=47.2
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
.|.+++..+...+|+.+...+ .|.|.++..+|+|.|+|+|.|.+|.....+.|.|+
T Consensus 459 ~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vk 514 (1051)
T KOG3513|consen 459 SWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVK 514 (1051)
T ss_pred EEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEEEe
Confidence 466677666778899887655 59999999999999999999999999988888763
No 64
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.12 E-value=1.8e-09 Score=46.06 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=40.5
Q ss_pred cccCCceecCC--CCCEEEEEe----CCEEEEEEccCCCCC-CeEEEEEEEcCCcceEEEEEE
Q psy12428 2 KHDNSTIPLNS--SNILDLKYK----NGVASLQIQEVFPED-EGVYVCTATNSLGTAETKCKL 57 (60)
Q Consensus 2 ~~~~~~~~~~~--~~~~~~~~~----~~~~~l~i~~~~~~d-~g~y~c~~~n~~g~~~~~~~l 57 (60)
.|.+++.++.. ..++.+... .....|.|.++..+| .|.|.|.|.|..|.....+.|
T Consensus 35 ~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 35 VWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 45566766654 356766543 122469999999855 899999999999998877665
No 65
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.11 E-value=2.3e-10 Score=48.12 Aligned_cols=36 Identities=39% Similarity=0.529 Sum_probs=33.1
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
..|.|.++..+|+|.|.|.+.|.+|.....+.|.|+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 90 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL 90 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEEC
Confidence 469999999999999999999999999999888874
No 66
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.08 E-value=1.5e-09 Score=43.77 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=35.6
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l 57 (60)
.|.+++.++....++.. .. ..|.|.++ .|.|.|.|.+.|..|.....+.|
T Consensus 19 ~W~k~g~~l~~~~~~~~--~~--~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 19 KWMKGGEELTKEDEMPV--GR--NVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred EEEECCEECCCccceec--Cc--cEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 45667777765444332 12 25888886 47899999999999998887765
No 67
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.08 E-value=3.9e-09 Score=44.80 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=35.9
Q ss_pred cccCCceecCCC--CCEEEEEeCCEEEEEEccCC-CCCCeEEEEEEEcCCcceEE-EEEE
Q psy12428 2 KHDNSTIPLNSS--NILDLKYKNGVASLQIQEVF-PEDEGVYVCTATNSLGTAET-KCKL 57 (60)
Q Consensus 2 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~~~n~~g~~~~-~~~l 57 (60)
.|.++|.++... .++.+ ..+ .|.|.++. ..|.|.|.|.+.|..|.... .+.|
T Consensus 37 ~W~~~g~~l~~~~~~~~~~--~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 37 RWKMNGTEIKFAPESRYTL--VAG--NLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred EEEECCEECccCCCceEEE--ECC--eEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 356677777533 34443 233 58887765 69999999999999998754 4444
No 68
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.06 E-value=1.3e-09 Score=44.70 Aligned_cols=50 Identities=28% Similarity=0.434 Sum_probs=33.6
Q ss_pred cccCCceecCCC--CCEEEEEeCCEEEEEEccCCC----CCCeEEEEEEEcCCcceEE
Q psy12428 2 KHDNSTIPLNSS--NILDLKYKNGVASLQIQEVFP----EDEGVYVCTATNSLGTAET 53 (60)
Q Consensus 2 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~----~d~g~y~c~~~n~~g~~~~ 53 (60)
.|.++|.++... .++.+....+ .|.|..+.. .|.|.|.|.+.|..|....
T Consensus 16 ~W~k~g~~l~~~~~~~~~~~~~~g--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 16 SWTRNGTHFDPEKDPRVTMKPDSG--TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred EEEECCeECCCCCCCCEEEeCCCC--EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 356677777533 3444332233 688887754 6899999999999997544
No 69
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.05 E-value=1.2e-09 Score=44.92 Aligned_cols=35 Identities=40% Similarity=0.622 Sum_probs=31.7
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
..|.|.++...|.|.|.|.+.|..|.....+.|.|
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 36999999999999999999999999888888764
No 70
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.04 E-value=8.2e-09 Score=42.55 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=39.3
Q ss_pred ccCCceecCCCCCEEEE-EeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 3 HDNSTIPLNSSNILDLK-YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
|.+++..+.+....... .......|.|.++...|.|.|.|.+.|..|....+..|.|
T Consensus 28 W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 28 WLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred EEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 44455555443333321 1223346899999999999999999999999888777653
No 71
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.00 E-value=4.3e-09 Score=43.71 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=31.9
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+.|.|.++..+|.|.|.|.+.|..+....++.|.|
T Consensus 49 s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 49 STLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 46999999999999999999999999888888765
No 72
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.00 E-value=4.5e-09 Score=42.81 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=35.6
Q ss_pred cccCCceecCCC-CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEE
Q psy12428 2 KHDNSTIPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54 (60)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~ 54 (60)
.|.++|.++.+. .++.. .+. .|.|.++..+|+|.|+|.+.|........
T Consensus 16 ~W~kdg~~l~~~~~~~~~--~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 16 IWLKDGLPAAEKCSRYHV--DGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred EEEECCEECCCCCcEEEe--CCC--EEEECcCCHHHCEEEEEEEEccccceEee
Confidence 466778887654 33432 233 69999999999999999999986554443
No 73
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.98 E-value=4.8e-09 Score=43.09 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=33.0
Q ss_pred cccCCceecCC--CCCEEEEEeCCEEEEEEccCCC----CCCeEEEEEEEcCCcceEEE
Q psy12428 2 KHDNSTIPLNS--SNILDLKYKNGVASLQIQEVFP----EDEGVYVCTATNSLGTAETK 54 (60)
Q Consensus 2 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~c~~~n~~g~~~~~ 54 (60)
.|.++|.++.. ..++.+....+ .|.|..+.. .|.|.|.|.|.|..|.....
T Consensus 16 ~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 16 SWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred EEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 35567777643 33444433333 577776654 37899999999999976553
No 74
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.97 E-value=1.4e-08 Score=42.97 Aligned_cols=28 Identities=50% Similarity=0.724 Sum_probs=23.2
Q ss_pred CCCCCCeEEEEEEEcCCcc-eEEEEEEEE
Q psy12428 32 VFPEDEGVYVCTATNSLGT-AETKCKLTV 59 (60)
Q Consensus 32 ~~~~d~g~y~c~~~n~~g~-~~~~~~l~v 59 (60)
+...|.|.|.|.+.|..|. .+..+.|.|
T Consensus 71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 71 KGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCcCcCEEEEEEEEccccceecceEEEEe
Confidence 3689999999999999998 556677765
No 75
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.97 E-value=8.8e-09 Score=42.31 Aligned_cols=42 Identities=38% Similarity=0.648 Sum_probs=31.6
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcce-EEEEEEE
Q psy12428 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA-ETKCKLT 58 (60)
Q Consensus 14 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~-~~~~~l~ 58 (60)
.++.+.. .+ .|.|.++..+|.|.|.|.+.|..|.. ...+.|.
T Consensus 36 ~r~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 36 GRIQLLS-NG--SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CCEEEec-CC--eEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 4555432 23 69999999999999999999999976 4445554
No 76
>KOG3513|consensus
Probab=98.97 E-value=5.7e-09 Score=58.52 Aligned_cols=56 Identities=32% Similarity=0.504 Sum_probs=47.2
Q ss_pred CcccCCceecCCCCC---EEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 1 MKHDNSTIPLNSSNI---LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
++|-+||.++.+..+ +++. .+ .|.|.++...|+|.|.|.|.|..|...+.+.|.|+
T Consensus 363 v~WlkNg~pl~~~~r~~~~~i~--~g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~ 421 (1051)
T KOG3513|consen 363 VKWLKNGEPLEPAERDPRYKID--DG--TLIISNVQESDSGVYQCIAENKYGTIYANAELKVL 421 (1051)
T ss_pred eEEeeCCeecCccCCCcceEEe--CC--EEEEEecccccCeEEEeeeecccceEeeeeEEEEE
Confidence 367889999987666 6663 44 69999999999999999999999999999888763
No 77
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.96 E-value=7.8e-09 Score=43.52 Aligned_cols=47 Identities=26% Similarity=0.376 Sum_probs=32.5
Q ss_pred ccCCceecCC--CCCEEEEEeCCEEEEEEccCC-CCCCeEEEEEEEcCCcceEE
Q psy12428 3 HDNSTIPLNS--SNILDLKYKNGVASLQIQEVF-PEDEGVYVCTATNSLGTAET 53 (60)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~~~n~~g~~~~ 53 (60)
|.+++.++.. ..++.. ..+ .|.|.++. ..|.|.|.|.+.|..|....
T Consensus 38 W~k~~~~l~~~~~~~~~~--~~~--~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 38 WLMNGTEIDDEPDSRYSL--VGG--NLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred EEECCEECCCCCCCCEEE--ECC--EEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 4566777643 233333 333 58888876 48999999999999997554
No 78
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.95 E-value=9.4e-09 Score=43.56 Aligned_cols=55 Identities=36% Similarity=0.474 Sum_probs=35.8
Q ss_pred cccCCceecCCCCC--EEEEEeCCEEEEEEccC-----CCCCCeEEEEEEEcC-Ccce-EEEEEEEE
Q psy12428 2 KHDNSTIPLNSSNI--LDLKYKNGVASLQIQEV-----FPEDEGVYVCTATNS-LGTA-ETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~g~y~c~~~n~-~g~~-~~~~~l~v 59 (60)
.|.++|.++..... +.+.. ++ .+.|..+ ...|.|.|.|.+.|. .|.. +..+.|.|
T Consensus 32 ~W~k~g~~l~~~~~~~~~~~~-~~--~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 32 EWKKDGVLLNLVSDERRQQLP-NG--SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEEECCeECccccCcceEEcc-CC--eEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 35567777765433 33322 33 3556555 588999999999999 9976 44556543
No 79
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.94 E-value=1.9e-08 Score=42.68 Aligned_cols=52 Identities=23% Similarity=0.443 Sum_probs=36.2
Q ss_pred cccCCceecCC-CCCEEEEEeCCEEEEEEccCC-CCCCeEEEEEEEcCCcceEE-EEEE
Q psy12428 2 KHDNSTIPLNS-SNILDLKYKNGVASLQIQEVF-PEDEGVYVCTATNSLGTAET-KCKL 57 (60)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~~~n~~g~~~~-~~~l 57 (60)
.|.+++.++.. ..++.+ .++ .|.|.++. ..|.|.|.|.+.|..|.... .+.|
T Consensus 37 ~W~k~~~~i~~~~~~~~~--~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 37 KWRKNNLDIDLTNDRYSM--VGG--NLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEECCEEccCCCCeEEE--ECC--EEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 35567777753 345543 234 68998875 68999999999999998654 3444
No 80
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.91 E-value=2.7e-08 Score=42.48 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=35.1
Q ss_pred cccCCceecCCCC-CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy12428 2 KHDNSTIPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 51 (60)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~ 51 (60)
.|.+++.++...+ ++....... .|.|.++..+|.|.|+|.+.+..+..
T Consensus 33 ~WYKd~~~l~~~~~~~~~~~~~~--~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 33 QWYKDSVLLDKDNEKFYSLKGST--YLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred EEccCCEECcCCCcceEecCCCC--EEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 5778888887543 333212222 69999999999999999999987654
No 81
>KOG4194|consensus
Probab=98.89 E-value=7.2e-09 Score=55.99 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=44.0
Q ss_pred cccCCcee---cCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 2 KHDNSTIP---LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 2 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|+++|.+ .....|+++.+++. .+.|.++..+|.|.|+|.|.|.+|...+.+.|.|
T Consensus 645 awqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V 703 (873)
T KOG4194|consen 645 AWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTV 703 (873)
T ss_pred eehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEE
Confidence 34444433 33456777776665 7899999999999999999999999998888876
No 82
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.89 E-value=2.8e-08 Score=41.81 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=32.4
Q ss_pred cccCCceecCCC-CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12428 2 KHDNSTIPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.|.++|.++... .++.+ ..+ .|.|.++...|.|.|.|.+.+.
T Consensus 28 ~W~~ng~~i~~~~~r~~~-~~~---~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 28 VWKFDGKVLTPESAKYLL-YRD---GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EEEECCEECCCCCceEEE-ECC---cEEEeCCCHHHCEEEEEEEEec
Confidence 467788888765 45544 233 4999999999999999998776
No 83
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.89 E-value=9e-09 Score=43.09 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=31.4
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+.|.|.++...|.|.|.|.+.|..+.......|.|
T Consensus 50 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V 84 (86)
T cd05862 50 STLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIV 84 (86)
T ss_pred eEEEEecCCcccCEEEEEEEeecceEecccEEEEE
Confidence 46999999999999999999999988888877776
No 84
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.87 E-value=2e-08 Score=41.82 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=28.6
Q ss_pred EEEEEEccCCCCCCeEEEEEEEcCCc--ceEEEEEEEE
Q psy12428 24 VASLQIQEVFPEDEGVYVCTATNSLG--TAETKCKLTV 59 (60)
Q Consensus 24 ~~~l~i~~~~~~d~g~y~c~~~n~~g--~~~~~~~l~v 59 (60)
.+.|.|.++...|.|.|.|.+.|..+ ....+..+.|
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V 82 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV 82 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence 34799999999999999999998765 4555555554
No 85
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.85 E-value=6.3e-08 Score=39.76 Aligned_cols=51 Identities=29% Similarity=0.434 Sum_probs=33.2
Q ss_pred cccCCceecC--CCCCEEEEEeCCEEEEEEccCC---C-CCCeEEEEEEEcCCcceEEE
Q psy12428 2 KHDNSTIPLN--SSNILDLKYKNGVASLQIQEVF---P-EDEGVYVCTATNSLGTAETK 54 (60)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~---~-~d~g~y~c~~~n~~g~~~~~ 54 (60)
.|-++|.++. ...++.+....+ .|.|..+. . .|.|.|.|.|.|..|.....
T Consensus 16 ~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 16 QWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred EEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 3556676653 345555432333 68887764 2 35899999999999976544
No 86
>smart00409 IG Immunoglobulin.
Probab=98.85 E-value=1.7e-07 Score=37.96 Aligned_cols=53 Identities=38% Similarity=0.542 Sum_probs=40.4
Q ss_pred ceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 7 TIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+.++....++..........|.|.++...|.|.|.|.+.+..+.......|.|
T Consensus 33 ~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 33 GKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 55665556666665543457999999999999999999988887766666665
No 87
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.85 E-value=1.7e-07 Score=37.96 Aligned_cols=53 Identities=38% Similarity=0.542 Sum_probs=40.4
Q ss_pred ceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 7 TIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+.++....++..........|.|.++...|.|.|.|.+.+..+.......|.|
T Consensus 33 ~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 33 GKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 55665556666665543457999999999999999999988887766666665
No 88
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.84 E-value=8.3e-08 Score=41.21 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=35.5
Q ss_pred CCCEEEEEe----CCEEEEEEccCCCCC-CeEEEEEEEcCCcceEEEEEE
Q psy12428 13 SNILDLKYK----NGVASLQIQEVFPED-EGVYVCTATNSLGTAETKCKL 57 (60)
Q Consensus 13 ~~~~~~~~~----~~~~~l~i~~~~~~d-~g~y~c~~~n~~g~~~~~~~l 57 (60)
+.+|.+... +..+.|.|.++...| .|.|.|.|.|.+|.......|
T Consensus 48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence 467777543 245679999998777 689999999999998877655
No 89
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.70 E-value=1.3e-07 Score=45.84 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=35.6
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 48 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 48 (60)
.|.++|+++....++.+...+. .|.|.++..+|.|.|.|.+....
T Consensus 167 ~WyKng~~l~~~~r~~~~~~~~--~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 167 TWYKNGNIVLYTDRIQLRNNNS--TLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EEEECCEECCCCCCEEEeCCCC--EEEECcCCHHhCEEEEEEEEEeE
Confidence 4667888887777777653333 79999999999999999988764
No 90
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.70 E-value=3.7e-07 Score=39.26 Aligned_cols=46 Identities=28% Similarity=0.478 Sum_probs=34.6
Q ss_pred CCEEEEE-eCCEEEEEEccCCCCCCeEEEEEEEc-CCcceEEEEEEEE
Q psy12428 14 NILDLKY-KNGVASLQIQEVFPEDEGVYVCTATN-SLGTAETKCKLTV 59 (60)
Q Consensus 14 ~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~~~n-~~g~~~~~~~l~v 59 (60)
+|..+.. ..+..+|.|.++...|.|.|.|...+ +.|+......|.|
T Consensus 51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 5555532 12234799999999999999999988 6777777777776
No 91
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.67 E-value=6.4e-07 Score=38.23 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCCEEEEEeC-CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy12428 13 SNILDLKYKN-GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58 (60)
Q Consensus 13 ~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~ 58 (60)
..|+.+.... ....|.|.++..+|.|.|+|.+... -...+.+.|.
T Consensus 49 ~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-~~~~~~~~~~ 94 (95)
T cd05882 49 DNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-PVRTAKATVT 94 (95)
T ss_pred CCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-ccccEEEEEE
Confidence 3566544322 2457999999999999999998773 2344444443
No 92
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.66 E-value=1e-07 Score=39.56 Aligned_cols=32 Identities=44% Similarity=0.661 Sum_probs=29.4
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l 57 (60)
.|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus 53 ~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 53 ILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred EEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 69999999999999999999999998887765
No 93
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.66 E-value=6.5e-07 Score=38.12 Aligned_cols=47 Identities=30% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 12 SSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 12 ~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
...|+..... .....|.|.++..+|+|.|.|.+.+. ......+.|.|
T Consensus 48 ~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~-~~~~~~~~l~v 95 (95)
T cd07701 48 RDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM-PVKTSKAYLTV 95 (95)
T ss_pred cCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee-cCccEEEEEEC
Confidence 3457665332 23457999999999999999998874 33355566653
No 94
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.65 E-value=6.5e-08 Score=41.41 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=31.4
Q ss_pred ccCCceec--CCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy12428 3 HDNSTIPL--NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 51 (60)
Q Consensus 3 ~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~ 51 (60)
|-+++.++ ..+.+..+....+ .|.|.++..+|.|.|.|.+.|.....
T Consensus 38 W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 38 WLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred EEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 34445443 2234444443334 59999999999999999999976543
No 95
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.64 E-value=1.6e-06 Score=36.74 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=30.7
Q ss_pred EEEEEEccCCCCCCeEEEEEEEc-CCcceEEEEEEEEC
Q psy12428 24 VASLQIQEVFPEDEGVYVCTATN-SLGTAETKCKLTVR 60 (60)
Q Consensus 24 ~~~l~i~~~~~~d~g~y~c~~~n-~~g~~~~~~~l~v~ 60 (60)
...|.|.++...|+|.|.|.... ..|.......|.|+
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEeC
Confidence 45799999999999999998764 66778887777764
No 96
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.62 E-value=8.5e-07 Score=37.81 Aligned_cols=37 Identities=32% Similarity=0.483 Sum_probs=30.5
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 23 ~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+...|.|.++..+|+|.|.|.+.+..+.......|.|
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 3457999999999999999999987776666666665
No 97
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.59 E-value=6.7e-07 Score=37.44 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=26.3
Q ss_pred EEEEccCCCCCCeEEEEEEEcC-CcceEEEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNS-LGTAETKCKLTV 59 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~-~g~~~~~~~l~v 59 (60)
.|.|.++..+|.|.|.|.+.+. .+....+..|.|
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V 86 (89)
T cd04979 52 GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV 86 (89)
T ss_pred CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence 4899999999999999999865 444555556654
No 98
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.58 E-value=6.4e-07 Score=39.32 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=34.7
Q ss_pred CCEEEEE---eCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 14 NILDLKY---KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 14 ~~~~~~~---~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|+++.. ..+...|.|.++..+|+|.|.|..............|.|
T Consensus 60 ~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 60 DRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred CeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEE
Confidence 3666543 224457999999999999999999988777766666654
No 99
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.57 E-value=8.5e-07 Score=38.20 Aligned_cols=46 Identities=26% Similarity=0.300 Sum_probs=35.0
Q ss_pred CCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 14 NILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 14 ~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|+.+... .....|.|.++..+|+|.|.|...+..+.......|.|
T Consensus 56 ~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v 102 (106)
T cd05877 56 GRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRL 102 (106)
T ss_pred CcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEE
Confidence 45554321 23457999999999999999999998888777777765
No 100
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.57 E-value=1.2e-06 Score=37.99 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=26.6
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~ 58 (60)
.|.|.++..+|+|.|.|+..|.-........|.
T Consensus 71 ~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 71 SIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEEEEeCChhhCeEEEEEECCCCcceEEEEEEE
Confidence 699999999999999999999865545444444
No 101
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.54 E-value=7e-07 Score=34.30 Aligned_cols=24 Identities=50% Similarity=0.774 Sum_probs=21.7
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCc
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
.|.|.++...|.|.|.|.+.|..|
T Consensus 40 ~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 40 TLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred EEEEeeCCcccCEEEEEEEecCCC
Confidence 699999999999999999988764
No 102
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.51 E-value=1.2e-06 Score=37.54 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=34.4
Q ss_pred CCEEEEE--eCCEEEEEEccCCCCCCeEEEEEEEc-CCcceEEEEEEEEC
Q psy12428 14 NILDLKY--KNGVASLQIQEVFPEDEGVYVCTATN-SLGTAETKCKLTVR 60 (60)
Q Consensus 14 ~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~~~n-~~g~~~~~~~l~v~ 60 (60)
+|..+.. ......|.|.++..+|.|.|.|...+ +.|.......|.|+
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V~ 100 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTVW 100 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEeC
Confidence 4555542 22345799999999999999999887 56666666777764
No 103
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.51 E-value=1e-06 Score=36.99 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=34.0
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEE-cCCcceEEEEEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT-NSLGTAETKCKL 57 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~-n~~g~~~~~~~l 57 (60)
+|..+|.++..+.++.... .+ |.|..+..+|+|.|.|.+. +.+-.......|
T Consensus 28 ~W~~ng~~l~~~~r~~~~~-~G---LlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l 80 (85)
T cd05872 28 VWLFNGTPLNAQFSYRVGT-DG---LLILVTSPEHSGTYRCYSEEEGFQQLVASYSL 80 (85)
T ss_pred EEEECCcccCCCcceEEeC-CC---CEEEECCHhhCEEEEEEEecCCCeEEEEEEEE
Confidence 4556666776666665543 33 8899999999999999864 444333333333
No 104
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.50 E-value=9.6e-07 Score=38.06 Aligned_cols=37 Identities=32% Similarity=0.528 Sum_probs=30.9
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 23 ~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+...|.|.++..+|.|.|.|.+.+..+.......|.|
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V 102 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEV 102 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEE
Confidence 4457999999999999999999988777676666655
No 105
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.49 E-value=6.4e-07 Score=37.20 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=29.1
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEE
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 53 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~ 53 (60)
.|.++|.++.. .+.. .. ..|.|..+ .|.|.|.|.|.|.+|....
T Consensus 32 ~W~k~g~~l~~--~~~~--~~--s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 32 LWWQGGSPLGD--PPAP--SP--SVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred EEEECCEECCC--CCCC--CC--CEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 35566777653 1111 12 25777776 4779999999999997654
No 106
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.46 E-value=3.4e-06 Score=35.68 Aligned_cols=45 Identities=29% Similarity=0.330 Sum_probs=31.2
Q ss_pred CCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 14 NILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 14 ~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|+.+... .....|.|.++..+|.|.|.|.+.+... ....+.|.|
T Consensus 50 ~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v 95 (95)
T cd05717 50 NRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV 95 (95)
T ss_pred CcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence 56665321 2345799999999999999999887653 355555543
No 107
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.44 E-value=1.5e-06 Score=36.74 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=28.0
Q ss_pred EEEEccCCCCCCeEEEEEEE-cCCcceEEEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTAT-NSLGTAETKCKLTV 59 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~-n~~g~~~~~~~l~v 59 (60)
.|.|.++..+|+|.|.|.+. +..+.......|.|
T Consensus 54 ~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v 88 (91)
T cd05871 54 GLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHV 88 (91)
T ss_pred eEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEE
Confidence 59999999999999999997 56666666667665
No 108
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.37 E-value=4.8e-06 Score=36.36 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=28.7
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 23 ~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+...|.|.++..+|.|.|.|..............|.|
T Consensus 70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEE
Confidence 4457999999999999999998776555555555554
No 109
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.36 E-value=5.9e-06 Score=41.99 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=28.3
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.|.++..+|+|.|.|.+.|..+.....+.|.|
T Consensus 83 ~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V 116 (326)
T PHA02785 83 NMLILNPTQSDSGIYICITKNETYCDMMSLNLTI 116 (326)
T ss_pred eEEEcccCcccCeEEEEEEECCCcceEEEEEEEE
Confidence 4788999999999999999999887666665554
No 110
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.35 E-value=2.1e-06 Score=38.68 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=28.5
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+|.|.++...|.|.|.|.+.+..+.......|.+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v 35 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSV 35 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEE
Confidence 5899999999999999999888777766666654
No 111
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.34 E-value=8.8e-06 Score=35.95 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=27.4
Q ss_pred CCEEEEE--eCCEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy12428 14 NILDLKY--KNGVASLQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 14 ~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
+|..+.- ..+..++.|.++..+|.|.|.|...|..+
T Consensus 67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence 4665532 12345799999999999999999998755
No 112
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.32 E-value=9.8e-06 Score=35.24 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=29.6
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC-cceEEEEEEE
Q psy12428 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL-GTAETKCKLT 58 (60)
Q Consensus 14 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~-g~~~~~~~l~ 58 (60)
.|..+.. ++ +|.|.++...|.|.|.|...+.- ........|.
T Consensus 62 gR~~~~~-ng--SL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 62 GRETIYP-NG--SLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CcEEEeC-CC--cEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 4555543 33 69999999999999999988875 3344444443
No 113
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.32 E-value=8.1e-06 Score=35.01 Aligned_cols=47 Identities=32% Similarity=0.466 Sum_probs=35.1
Q ss_pred CCEEEE-EeCCEEEEEEccCCCCCCeEEEEEE-EcCCcceEEEEEEEEC
Q psy12428 14 NILDLK-YKNGVASLQIQEVFPEDEGVYVCTA-TNSLGTAETKCKLTVR 60 (60)
Q Consensus 14 ~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~~-~n~~g~~~~~~~l~v~ 60 (60)
+|..+. ......+|.|.++...|.|.|.|.. ..+.|+..+...|.|+
T Consensus 48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTVL 96 (96)
T ss_pred CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEEC
Confidence 455553 1122347999999999999999985 5668888888888774
No 114
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.30 E-value=2.1e-06 Score=36.62 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=25.2
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy12428 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTA 51 (60)
Q Consensus 22 ~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~ 51 (60)
.+...|.|.++..+|+|.|.|.+.|..+..
T Consensus 62 ~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~ 91 (94)
T cd07690 62 QGSFPLIIKNLKIEDSDTYICEVEDKKEEV 91 (94)
T ss_pred CCeEEEEECCCCHHHCEEEEEEECCccceE
Confidence 344579999999999999999999886654
No 115
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.30 E-value=2.2e-05 Score=33.64 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.9
Q ss_pred CCCCEEEEE-eCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12428 12 SSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 12 ~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.++|+.... .+....|.|.++..+|.|.|.|.+...
T Consensus 48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 567888765 345567999999999999999987654
No 116
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.29 E-value=2.9e-06 Score=41.26 Aligned_cols=34 Identities=35% Similarity=0.561 Sum_probs=29.1
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.|.++...|+|.|.|.+.|..+.......|.|
T Consensus 99 ~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V 132 (227)
T PHA02826 99 NLWIGNVINIDEGIYICTISSGNICEESTIRLTF 132 (227)
T ss_pred eEEECCCChHHCEEEEEEEEECCcceEEEEEEEE
Confidence 6999999999999999999998877666666554
No 117
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.28 E-value=2e-05 Score=34.97 Aligned_cols=37 Identities=32% Similarity=0.541 Sum_probs=30.8
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 23 ~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
+..+|.|.++..+|.|.|.|..............|.|
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V 113 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV 113 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence 3458999999999999999999888777777766654
No 118
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.28 E-value=1e-05 Score=35.04 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=32.2
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEC
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v~ 60 (60)
+.|.+.+++..+.|.|+|.+.|+..+.+.++.|.|+
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 369999999999999999999999999988888763
No 119
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.27 E-value=1.6e-06 Score=35.74 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.8
Q ss_pred EEEEccCCCCCCeEEEEEEEcC
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.|.|.++ ..|+|.|.|.+.|.
T Consensus 48 ~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 48 SYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEEeec-ccCCEEeEEECCCC
Confidence 5888888 99999999999876
No 120
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.27 E-value=8.3e-07 Score=34.84 Aligned_cols=18 Identities=50% Similarity=0.970 Sum_probs=17.1
Q ss_pred EEEccCCCCCCeEEEEEE
Q psy12428 27 LQIQEVFPEDEGVYVCTA 44 (60)
Q Consensus 27 l~i~~~~~~d~g~y~c~~ 44 (60)
|.|.++...|+|.|.|.+
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999975
No 121
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.26 E-value=1.2e-05 Score=40.85 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.6
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAE 52 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~ 52 (60)
.|.|.++..+|.|.|.|.|.|..+...
T Consensus 293 ~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 293 RLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred EEEECCcchhcCeeeEEEEEeccCceE
Confidence 699999999999999999999875433
No 122
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.24 E-value=2.3e-06 Score=36.63 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=29.2
Q ss_pred cCCCCCEEEEEeCCEEEEEEccCCCCCCe-EEEEEEEcCCcce
Q psy12428 10 LNSSNILDLKYKNGVASLQIQEVFPEDEG-VYVCTATNSLGTA 51 (60)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~~~n~~g~~ 51 (60)
+....|+.+... + .|.|.++...|.| .|.|.+.|.....
T Consensus 46 i~~~~Ri~~~~~-G--nL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 46 ITQDERVSMGQN-G--NLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred ccccccEEECCC-c--eEEEEEEehhhCCCCeEEEEEcccccc
Confidence 444566655443 3 5999999999999 8999999986443
No 123
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.22 E-value=1.2e-05 Score=34.31 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=28.6
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcc-eEEEEEEEE
Q psy12428 23 GVASLQIQEVFPEDEGVYVCTATNSLGT-AETKCKLTV 59 (60)
Q Consensus 23 ~~~~l~i~~~~~~d~g~y~c~~~n~~g~-~~~~~~l~v 59 (60)
....|.|.++..+|+|.|.|......+. ......|.|
T Consensus 59 ~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 59 NDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred CceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 3457999999999999999998877654 345556654
No 124
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.22 E-value=1.8e-05 Score=34.73 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=33.3
Q ss_pred CCEEEEEe---CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 14 NILDLKYK---NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 14 ~~~~~~~~---~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|..+... .+...|.|.++..+|.|.|.|..............|.|
T Consensus 58 gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 58 GRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred cEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEE
Confidence 45555431 23458999999999999999998887655566666654
No 125
>PHA02633 hypothetical protein; Provisional
Probab=98.20 E-value=1.6e-05 Score=31.50 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=26.3
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.|.|.++..+|+|.|.|...|.--....+..|+|
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V 52 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCI 52 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEE
Confidence 5899999999999999999887544455555544
No 126
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.18 E-value=2.4e-05 Score=32.73 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=29.1
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcc-eEEEEEEE
Q psy12428 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT-AETKCKLT 58 (60)
Q Consensus 14 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~-~~~~~~l~ 58 (60)
.|+.+... ..|.|.++..+|+|.|.|......+. ......|.
T Consensus 49 ~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 49 GRETIYPN---GSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR 91 (92)
T ss_pred CeEEEcCC---ceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence 44555332 47999999999999999998777543 33334443
No 127
>KOG4222|consensus
Probab=98.18 E-value=5.9e-06 Score=47.53 Aligned_cols=54 Identities=37% Similarity=0.583 Sum_probs=38.0
Q ss_pred ccCCceecC--CCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEEE
Q psy12428 3 HDNSTIPLN--SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTV 59 (60)
Q Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~-~~~l~v 59 (60)
|-++|.++. ..+++.+.. ++ .|.|.++..+|.|.|.|++.|..|.... .+.|.|
T Consensus 166 w~Kdg~pl~~~~~~~~~lis-gG--~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv 222 (1281)
T KOG4222|consen 166 WVKDGKPLDHYDVPIIALIS-GG--NLLISNVRKSDEGTYACVATNMVGERESIPARLSV 222 (1281)
T ss_pred eecCCCccccccceeEEEec-CC--cEEEeccccCCCceeeeeecccccccccccceeee
Confidence 456666766 344555544 34 4999999999999999999999886543 244443
No 128
>KOG4221|consensus
Probab=98.17 E-value=9e-06 Score=47.12 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=39.2
Q ss_pred CcccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
++|-+||..|.-++ +.+... +...|.|.++...|+|.|+|.+.|.--...+.+.|.|
T Consensus 269 v~Wlrng~~i~~ds-~rivl~-g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V 325 (1381)
T KOG4221|consen 269 VKWLRNGEKISVDS-YRIVLV-GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTV 325 (1381)
T ss_pred eEEeeCCeeeeecc-eEEEEe-cccceEEeccccccCceEEEEecCCCcccccceEEEE
Confidence 46778888886544 343322 1236999999999999999999995445455555444
No 129
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.16 E-value=3.9e-06 Score=34.89 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.4
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcce
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTA 51 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~ 51 (60)
.|.|.++..+|+|.|.|.+.+..+..
T Consensus 49 ~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 49 NLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred eEEECccCHHHCEEEEEEEEeCCcee
Confidence 69999999999999999999998753
No 130
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.11 E-value=1.6e-05 Score=33.98 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=28.6
Q ss_pred CCCEEEEEeC--CEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy12428 13 SNILDLKYKN--GVASLQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 13 ~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
.+|+.+.... ....|.|.++..+|.|.|.|.+.+..+
T Consensus 53 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 53 KGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 3566655433 456899999999999999999887654
No 131
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.11 E-value=2.2e-05 Score=33.86 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=28.0
Q ss_pred CCCEEEEEe--CCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12428 13 SNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNSL 48 (60)
Q Consensus 13 ~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~n~~ 48 (60)
..|+.+... ...+.|.|.++..+|+|.|.|.+.+..
T Consensus 56 ~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 56 KGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 466766432 356789999999999999999988653
No 132
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.09 E-value=5.3e-05 Score=32.44 Aligned_cols=46 Identities=28% Similarity=0.413 Sum_probs=31.7
Q ss_pred CCEEEEEe--CCEEEEEEccCCCCCCeEEEEEEEcC-CcceEEEEEEEE
Q psy12428 14 NILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNS-LGTAETKCKLTV 59 (60)
Q Consensus 14 ~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~n~-~g~~~~~~~l~v 59 (60)
.++.+... .....|.|.++..+|.|.|.|..... .........|.|
T Consensus 66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp TTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred eeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 45555543 33568999999999999999987765 333444445543
No 133
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=98.07 E-value=8.7e-06 Score=40.34 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=37.1
Q ss_pred CcccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12428 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
+|.+.+|.++.++++++++.++. |.+.+...+++|.|+|...-.
T Consensus 16 ~W~GP~g~~l~gn~~~nIT~TG~---L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 16 LWTGPNGKPLSGNSYVNITETGK---LMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred EEECCCCcccCCCCeEEEccCce---EEeeccccccCCceEEEEEEE
Confidence 36778888999988999987664 999999999999999986543
No 134
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.05 E-value=3.5e-05 Score=32.79 Aligned_cols=38 Identities=34% Similarity=0.391 Sum_probs=30.2
Q ss_pred CEEEEEEccCCCCCCeEEEEEEE-cCCcceEEEEEEEEC
Q psy12428 23 GVASLQIQEVFPEDEGVYVCTAT-NSLGTAETKCKLTVR 60 (60)
Q Consensus 23 ~~~~l~i~~~~~~d~g~y~c~~~-n~~g~~~~~~~l~v~ 60 (60)
....|.|.++..+|.|.|.|... .+.|+......|+|.
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTVY 97 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEEC
Confidence 34579999999999999999855 557777777777763
No 135
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.00 E-value=4.8e-05 Score=32.36 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=27.0
Q ss_pred CCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12428 13 SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 46 (60)
Q Consensus 13 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n 46 (60)
.+++..........|.|.++..+|+|.|.|.+.+
T Consensus 51 ~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 51 PDRFSGSKSGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred CCCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence 3567765555566799999999999999998764
No 136
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.96 E-value=9.3e-05 Score=30.45 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcc
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGT 50 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~ 50 (60)
.|.+......+.+.|.|.+.|..-.
T Consensus 47 ~L~i~~~~~~~~~~y~C~a~n~~l~ 71 (82)
T cd05759 47 TLPITPSDHDTGRTFTCRARNEALP 71 (82)
T ss_pred EEEEeCceecCCCEEEEEEcCccCC
Confidence 4667666667788999999887544
No 137
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.90 E-value=5.5e-05 Score=32.62 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=26.3
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12428 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 14 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
+++..........|.|.++..+|.|.|.|.+.+.
T Consensus 60 ~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 60 SRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 4666544445567999999999999999987654
No 138
>KOG4221|consensus
Probab=97.88 E-value=7.9e-05 Score=43.56 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=37.0
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~ 50 (60)
.|.++.+++...+++.....+ .|.|..+..+|.|.|.|++.+...+
T Consensus 173 ~w~kn~~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~ 218 (1381)
T KOG4221|consen 173 MWLKNDQPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQ 218 (1381)
T ss_pred EEecccccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcC
Confidence 467788888877777665544 5999999999999999999987654
No 139
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.88 E-value=0.00011 Score=32.06 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=26.7
Q ss_pred CCCEEEEEeC--CEEEEEEccCCCCCCeEEEEEEEc
Q psy12428 13 SNILDLKYKN--GVASLQIQEVFPEDEGVYVCTATN 46 (60)
Q Consensus 13 ~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~~~n 46 (60)
..|+.+.... ....|.|.++..+|+|.|.|.+..
T Consensus 63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 3577765443 467899999999999999998754
No 140
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.88 E-value=0.00011 Score=32.36 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=26.1
Q ss_pred CCEEEE--EeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12428 14 NILDLK--YKNGVASLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 14 ~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.|+++. ...+.+.|.|.++..+|+|.|.|.....
T Consensus 67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 466663 2345678999999999999999987553
No 141
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.87 E-value=3.4e-05 Score=30.67 Aligned_cols=22 Identities=41% Similarity=0.770 Sum_probs=19.9
Q ss_pred EEEEEccCCCCCCeEEEEEEEc
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATN 46 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n 46 (60)
..|.|..+..+|.|.|.|.+.|
T Consensus 54 ~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 54 STLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEESSCCGGGTEEEEEEEEE
T ss_pred eEEEEccCCHHhCcEEEEEEEC
Confidence 3699999999999999999976
No 142
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.86 E-value=6.8e-05 Score=32.96 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=23.1
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy12428 23 GVASLQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 23 ~~~~l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
+...|.|.++..+|.|.|.|.+.|...
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 77 RDASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 345799999999999999999987654
No 143
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.85 E-value=7.4e-05 Score=32.77 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.5
Q ss_pred EEEEEEccCCCCCCeEEEEEEEcCCc
Q psy12428 24 VASLQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 24 ~~~l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
...|.|.++..+|.|.|.|.+.|.-.
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 45799999999999999999887644
No 144
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.83 E-value=5.7e-05 Score=30.59 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=24.2
Q ss_pred CCCEEEEEe--CCEEEEEEccCCCCCCeEEEEE
Q psy12428 13 SNILDLKYK--NGVASLQIQEVFPEDEGVYVCT 43 (60)
Q Consensus 13 ~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~ 43 (60)
.+|+.+... .....|.|.++..+|.|.|.|.
T Consensus 48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 356666543 4556799999999999999995
No 145
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.80 E-value=0.00036 Score=29.96 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=29.9
Q ss_pred CCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEc-CCcceEEEEEE
Q psy12428 14 NILDLKYK-NGVASLQIQEVFPEDEGVYVCTATN-SLGTAETKCKL 57 (60)
Q Consensus 14 ~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n-~~g~~~~~~~l 57 (60)
+|..+... ....+|.|.++...|.|.|.|.... +.|.......+
T Consensus 48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 45555321 1234799999999999999998655 46666555443
No 146
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.80 E-value=8.7e-05 Score=32.18 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=26.3
Q ss_pred CCCEEEEEeC-CEEEEEEccCCCCCCeEEEEEEEcC
Q psy12428 13 SNILDLKYKN-GVASLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 13 ~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.+++...... ..+.|.|.++..+|+|.|.|.+.+.
T Consensus 59 ~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 59 KDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CCceEEECcCCCccEEEECCCChhhCEEEEEEeeCC
Confidence 3566654332 3467999999999999999998764
No 147
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.79 E-value=9.5e-05 Score=31.93 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=26.2
Q ss_pred CCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12428 13 SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 46 (60)
Q Consensus 13 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n 46 (60)
..++..........|.|.++..+|+|.|.|...+
T Consensus 57 ~~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 57 SKRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred CceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 3566654445566799999999999999998653
No 148
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.66 E-value=0.00014 Score=29.28 Aligned_cols=33 Identities=45% Similarity=0.720 Sum_probs=24.3
Q ss_pred EEEccCCCCCCeEEEEEEEcCCc-ceEEEEEEEE
Q psy12428 27 LQIQEVFPEDEGVYVCTATNSLG-TAETKCKLTV 59 (60)
Q Consensus 27 l~i~~~~~~d~g~y~c~~~n~~g-~~~~~~~l~v 59 (60)
+.+..+...+.|.|.|.+.+..+ ..+..+.|.|
T Consensus 47 ~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 47 LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 66778889999999999999655 3444455543
No 149
>PHA03376 BARF1; Provisional
Probab=97.62 E-value=0.0011 Score=32.09 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=25.4
Q ss_pred CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12428 15 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 15 ~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
++.+....++.+|.|.++..+|.|.|.|..+..
T Consensus 77 rtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkg 109 (221)
T PHA03376 77 FFDIHRSANTFFLVVTAANISHDGNYLCRMKLG 109 (221)
T ss_pred EEEEEecCCeEEEEEEeeeecCCceEEEEEEcC
Confidence 344444456678999999999999999986554
No 150
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.61 E-value=0.00018 Score=29.94 Aligned_cols=49 Identities=8% Similarity=0.038 Sum_probs=31.0
Q ss_pred cccCCceecCCCCCEEEE--EeCCEEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy12428 2 KHDNSTIPLNSSNILDLK--YKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~ 50 (60)
+|-++++++......... .......|.+......|.+.|.|.|.|..+.
T Consensus 18 ~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 18 RWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 466777777542110000 0001225888888889999999999998775
No 151
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.60 E-value=0.00025 Score=31.01 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=26.6
Q ss_pred CCCEEEEE--eCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12428 13 SNILDLKY--KNGVASLQIQEVFPEDEGVYVCTATN 46 (60)
Q Consensus 13 ~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~~~n 46 (60)
.+|+.+.. ......|.|.++..+|.|.|.|....
T Consensus 58 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 58 KGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred CCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 46777652 23456799999999999999998774
No 152
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.44 E-value=0.00053 Score=29.70 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=24.4
Q ss_pred CCEEEEEe--CCEEEEEEccCCCCCCeEEEEEEEc
Q psy12428 14 NILDLKYK--NGVASLQIQEVFPEDEGVYVCTATN 46 (60)
Q Consensus 14 ~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~n 46 (60)
+++.+... .....|.|.++..+|.|.|.|...+
T Consensus 59 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 59 EKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred CcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcC
Confidence 46655322 3345799999999999999998653
No 153
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.42 E-value=0.002 Score=30.90 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=29.0
Q ss_pred CCEEE-EEeCCEEEEEEccCCCCCCeEEEEEEE-cCCc-ceEEEEEEE
Q psy12428 14 NILDL-KYKNGVASLQIQEVFPEDEGVYVCTAT-NSLG-TAETKCKLT 58 (60)
Q Consensus 14 ~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c~~~-n~~g-~~~~~~~l~ 58 (60)
+|+.+ +.......|.|.++..+|+|.|.|... -+.| +......|.
T Consensus 73 ~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLt 120 (189)
T PHA02987 73 NKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLN 120 (189)
T ss_pred CeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEE
Confidence 46653 322333579999999999999999753 3345 344444444
No 154
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.41 E-value=0.00043 Score=29.37 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=26.3
Q ss_pred CCCEEEEEe--CCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12428 13 SNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 13 ~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
..|+.+... .+...|.|.++..+|+|.|.|.....
T Consensus 50 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 86 (98)
T cd05716 50 EGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDD 86 (98)
T ss_pred CCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccC
Confidence 356665422 34567999999999999999987654
No 155
>KOG4222|consensus
Probab=97.35 E-value=0.00032 Score=41.01 Aligned_cols=45 Identities=38% Similarity=0.595 Sum_probs=36.3
Q ss_pred CCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 13 SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 13 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
..|+.+..... .|.|.++...|.|.|.|.+.|..|.......++|
T Consensus 268 ~~ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV 312 (1281)
T KOG4222|consen 268 RSRYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTV 312 (1281)
T ss_pred ccceeeeeccc--cccccccCCCcccceeeeccccccccccccceEE
Confidence 35666654422 6999999999999999999999998888777765
No 156
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.26 E-value=0.00069 Score=28.53 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.1
Q ss_pred EEEEccCCCCCCeEEEEEEEcC
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.+.|.++...|.|.|.|...+.
T Consensus 54 ~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 54 KFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred EEEccCCChhHCEEEEEEEECC
Confidence 5899999999999999999886
No 157
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.91 E-value=0.0046 Score=27.30 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=24.9
Q ss_pred CCEEEEEeC--CEEEEEEccCCCCCCeEEEEEEEc
Q psy12428 14 NILDLKYKN--GVASLQIQEVFPEDEGVYVCTATN 46 (60)
Q Consensus 14 ~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~~~n 46 (60)
+|+...... ....|.|.++..+|+|.|.|....
T Consensus 63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 567665332 335699999999999999998653
No 158
>KOG4194|consensus
Probab=96.80 E-value=0.0034 Score=35.31 Aligned_cols=51 Identities=25% Similarity=0.404 Sum_probs=35.6
Q ss_pred ccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEE
Q psy12428 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 55 (60)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~ 55 (60)
|-++++|+-..+|..+.. +.--|.+.....+|.|.|+|...+..|......
T Consensus 741 W~k~d~pil~t~rh~f~d--~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i 791 (873)
T KOG4194|consen 741 WFKEDKPILITERHTFPD--GDQLLVVKENLVEDAGIYTCEMSNTLGTERIHI 791 (873)
T ss_pred ccCCCCceEEeecccCCC--CCeEEEEEehhhhhcceEEEEEEeeccceeeEE
Confidence 445566665555555533 333678888889999999999999888655443
No 159
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.72 E-value=0.0073 Score=22.75 Aligned_cols=24 Identities=46% Similarity=0.746 Sum_probs=20.9
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCC
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSL 48 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~ 48 (60)
..|.+.++...|.|.|.|.+.+..
T Consensus 43 ~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 43 STLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEECccCcccCcEEEEEEecCc
Confidence 468999999999999999988765
No 160
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.19 E-value=0.034 Score=24.54 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=28.4
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy12428 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 52 (60)
Q Consensus 14 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~~ 52 (60)
.++.+..++- +|.|..+...|+|.|.-...+.-|...
T Consensus 62 ~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~ 98 (108)
T PF11465_consen 62 NRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVC 98 (108)
T ss_dssp HHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEE
T ss_pred ceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEE
Confidence 4666655544 899999999999999999999888764
No 161
>KOG1480|consensus
Probab=96.16 E-value=0.0026 Score=36.29 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=34.8
Q ss_pred cccCCceecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy12428 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 51 (60)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~~ 51 (60)
.|-+++..+.+.++....... .+.+..+..+|.|+|+|++.|.++..
T Consensus 163 ~w~k~e~~~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 163 EWLKNEVVIDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred hccccCCCCCccccchhhhcC---Cccccchhhhhcccceeeeehhhccc
Confidence 355667677765555444434 48999999999999999999987754
No 162
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.97 E-value=0.018 Score=24.47 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=17.8
Q ss_pred EEEEccCCCCCCeEEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTAT 45 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~ 45 (60)
.+.|..+...|+|.|.|...
T Consensus 56 ~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 56 SFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEecCCCcccCEEEEEEEE
Confidence 57999999999999999864
No 163
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=95.69 E-value=0.042 Score=22.65 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=15.2
Q ss_pred EEEccCCCCCCeEEEEEEEcCCcc
Q psy12428 27 LQIQEVFPEDEGVYVCTATNSLGT 50 (60)
Q Consensus 27 l~i~~~~~~d~g~y~c~~~n~~g~ 50 (60)
|.+......+...|.|.+.+....
T Consensus 47 l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 47 LRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEcchhhCCCEEEEEEeChhcC
Confidence 444333344456999999887544
No 164
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=95.64 E-value=0.014 Score=24.40 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=16.2
Q ss_pred EEEccCCCCCCeEEEEEEEcCCc
Q psy12428 27 LQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 27 l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
|.+......+.+.|.|.+.+...
T Consensus 64 l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 64 LTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EEECHHHhCCCCCEEEEEEeCCC
Confidence 44544444589999999988644
No 165
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=95.51 E-value=0.063 Score=22.29 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=26.1
Q ss_pred CcccCCceecCCCCCEEEEEe-C-CE----EEEEEccCCCCCCeEEEEEEEcCCc
Q psy12428 1 MKHDNSTIPLNSSNILDLKYK-N-GV----ASLQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~-~~----~~l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
++|.++|+++..... .+... . +. ..|.+......+...|.|.+.+...
T Consensus 17 ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 17 IKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred eEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 356677777754322 22211 1 11 1344444445566799999988754
No 166
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.46 E-value=0.025 Score=25.79 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=21.9
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
.+|.+.....- .|+|+|.+............|.+
T Consensus 86 aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 86 ASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp --EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 34666664444 79999999888776666666653
No 167
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=95.32 E-value=0.084 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=19.3
Q ss_pred EEEEccCCCCCCeEEEEEEEcC
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.|.+..+...|.|.++|.....
T Consensus 52 tL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 52 TLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred EEEeceeCcccCCEEEEEEEEC
Confidence 6889999999999999998654
No 168
>PHA02982 hypothetical protein; Provisional
Probab=94.47 E-value=0.26 Score=24.60 Aligned_cols=37 Identities=16% Similarity=0.431 Sum_probs=29.4
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy12428 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50 (60)
Q Consensus 14 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~ 50 (60)
..+.++..+..++|.|.++..+..|-|+|.+....+.
T Consensus 89 d~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k 125 (251)
T PHA02982 89 DKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGK 125 (251)
T ss_pred eeEEEEEeccceeEEeccCCcccCCceEEEEecCCCc
Confidence 3455666666678999999999999999998876543
No 169
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=94.46 E-value=0.15 Score=21.22 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=15.5
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCc
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
.|.+..-...+...|.|.+.+..-
T Consensus 47 ~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 47 TLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEcccccCCCEEEEEEechhc
Confidence 355544444556699999987643
No 170
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=93.69 E-value=0.24 Score=20.80 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=16.5
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCc
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
.|.+..-...|...|.|.+.|..-
T Consensus 45 ~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 45 QLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEECchhhCCCEEEEEEcCccc
Confidence 566644445555599999988754
No 171
>KOG4597|consensus
Probab=92.34 E-value=0.36 Score=26.84 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=27.8
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l 57 (60)
+.|.|.+.-..|.|.|.|.+.+..|..+..+.+
T Consensus 257 cql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c 289 (560)
T KOG4597|consen 257 CQLVICNEWQADAGWYTCSARCGAGFLRRDVPC 289 (560)
T ss_pred eeEEEcchhhcCCCceeeccccccceeecccee
Confidence 468999999999999999999999877665544
No 172
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=91.41 E-value=0.52 Score=19.05 Aligned_cols=17 Identities=41% Similarity=0.741 Sum_probs=12.4
Q ss_pred ccCCCCCCeEEEEEEEcC
Q psy12428 30 QEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 30 ~~~~~~d~g~y~c~~~n~ 47 (60)
.+-. ++.|.|.|.+.+.
T Consensus 40 ~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 40 LNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccC-CCCceEEEEeCCC
Confidence 3444 7899999988654
No 173
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=89.89 E-value=0.73 Score=18.88 Aligned_cols=21 Identities=19% Similarity=0.520 Sum_probs=15.2
Q ss_pred EEEEccCCCCCCeEEEEEEEc
Q psy12428 26 SLQIQEVFPEDEGVYVCTATN 46 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n 46 (60)
.|-+........|.|.|.+.+
T Consensus 34 tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 34 LLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred EEeccCcccCCCcceEecCcc
Confidence 355555556678999998866
No 174
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=89.49 E-value=1.2 Score=20.08 Aligned_cols=32 Identities=34% Similarity=0.342 Sum_probs=21.9
Q ss_pred CCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12428 12 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT 45 (60)
Q Consensus 12 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 45 (60)
-.++|++..++- .|.|...+.+|.|.|....+
T Consensus 92 ledgY~FhlEnL--sL~Il~SrkE~EGWYfmtlE 123 (126)
T PF06214_consen 92 LEDGYKFHLENL--SLEILESRKEDEGWYFMTLE 123 (126)
T ss_dssp SSSSEEEETTTT--EEEETT--GGG-EEEEEEEE
T ss_pred cccccEEecccc--eeehhccccccCceEEEEee
Confidence 356777766555 79999999999999987643
No 175
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=89.38 E-value=1.2 Score=20.06 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=19.7
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEc
Q psy12428 23 GVASLQIQEVFPEDEGVYVCTATN 46 (60)
Q Consensus 23 ~~~~l~i~~~~~~d~g~y~c~~~n 46 (60)
....|.+.++..+|.+.|.|..+.
T Consensus 72 ntv~L~l~~L~a~DTa~Y~Ca~e~ 95 (115)
T cd05721 72 EQVNFTLQNLRANQTDIYFCKIEL 95 (115)
T ss_pred CEEEEEEcCCCHHHCeEEEEEeee
Confidence 335799999999999999996543
No 176
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=89.18 E-value=1.1 Score=19.51 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=16.4
Q ss_pred EEEEccCCCCCCe-EEEEEEEcCCcc
Q psy12428 26 SLQIQEVFPEDEG-VYVCTATNSLGT 50 (60)
Q Consensus 26 ~l~i~~~~~~d~g-~y~c~~~n~~g~ 50 (60)
.+.+. +...|.| .|.|.+.+....
T Consensus 63 tlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 63 TITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred EEEEe-cchhhCCcEEEEEEEeccCc
Confidence 45543 4456666 999999987654
No 177
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=87.80 E-value=0.52 Score=25.79 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.8
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcc
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSLGT 50 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~g~ 50 (60)
++|.|.+++....|-|.|.+....-+
T Consensus 346 STLTIkka~I~N~GCY~~~a~~g~~~ 371 (500)
T PHA02914 346 STLTIKKAHINNAGCYEAQAFMGKFK 371 (500)
T ss_pred ceEEeeeEEEEcCCceEEEEecCcch
Confidence 37999999999999999998776433
No 178
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=87.30 E-value=1.5 Score=18.49 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=12.1
Q ss_pred cCCCCCCeEEEEEEEcC
Q psy12428 31 EVFPEDEGVYVCTATNS 47 (60)
Q Consensus 31 ~~~~~d~g~y~c~~~n~ 47 (60)
.+...+...|.|.+...
T Consensus 66 ~v~~~~~~~ytC~V~H~ 82 (93)
T cd07698 66 EVPPEDKARYSCRVEHS 82 (93)
T ss_pred EECCCCCCEEEEEEEeC
Confidence 34445778999998665
No 179
>PHA03042 CD47-like protein; Provisional
Probab=84.61 E-value=1.8 Score=22.56 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=13.7
Q ss_pred CCCCeEEEEEEEcCCcceEEE
Q psy12428 34 PEDEGVYVCTATNSLGTAETK 54 (60)
Q Consensus 34 ~~d~g~y~c~~~n~~g~~~~~ 54 (60)
..-.|+|+|.+.+..-.....
T Consensus 79 ~~l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 79 KNLSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred ccCCCceeEEEeecccCccEE
Confidence 344799999987765443333
No 180
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=82.63 E-value=2.9 Score=17.92 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=11.0
Q ss_pred CCCCCCeEEEEEEEcC
Q psy12428 32 VFPEDEGVYVCTATNS 47 (60)
Q Consensus 32 ~~~~d~g~y~c~~~n~ 47 (60)
+...+...|.|.+.-.
T Consensus 67 ~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 67 FTPTKGDEYACRVRHN 82 (93)
T ss_pred ECCCCCCeEEEEEEEC
Confidence 3456667899987653
No 181
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=82.08 E-value=3 Score=17.75 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=10.2
Q ss_pred CCCCCeEEEEEEEcC
Q psy12428 33 FPEDEGVYVCTATNS 47 (60)
Q Consensus 33 ~~~d~g~y~c~~~n~ 47 (60)
...+...|.|.+.-.
T Consensus 68 ~~~~~~~ysC~V~H~ 82 (94)
T cd05766 68 TPSRGDTYTCVVEHS 82 (94)
T ss_pred cCCCCCEEEEEEEeC
Confidence 344566899987654
No 182
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=81.63 E-value=2.7 Score=16.88 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=13.7
Q ss_pred EEEccCCCCCCeEEEEEEEcC
Q psy12428 27 LQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 27 l~i~~~~~~d~g~y~c~~~n~ 47 (60)
|.+......+...|.|.+...
T Consensus 50 L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 50 LTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred EEEccccCCCCCEEEEEEEEc
Confidence 555444555667999987654
No 183
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=81.57 E-value=3.2 Score=17.77 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=9.5
Q ss_pred CCCCeEEEEEEEcC
Q psy12428 34 PEDEGVYVCTATNS 47 (60)
Q Consensus 34 ~~d~g~y~c~~~n~ 47 (60)
..+...|.|.+.-.
T Consensus 70 ~~~~~~ytC~V~H~ 83 (94)
T cd05767 70 PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCCeEEEEEEeC
Confidence 34556899987654
No 184
>PHA03189 UL14 tegument protein; Provisional
Probab=78.73 E-value=5.7 Score=21.22 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.2
Q ss_pred cCCCCCCeEEEEEEEcCCcce
Q psy12428 31 EVFPEDEGVYVCTATNSLGTA 51 (60)
Q Consensus 31 ~~~~~d~g~y~c~~~n~~g~~ 51 (60)
++..+.+|.|.|+..|..+..
T Consensus 139 ~v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred EEEecccceEEEEecccccee
Confidence 456677899999998876543
No 185
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=77.45 E-value=4.1 Score=16.60 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=9.5
Q ss_pred CCCCeEEEEEEEcC
Q psy12428 34 PEDEGVYVCTATNS 47 (60)
Q Consensus 34 ~~d~g~y~c~~~n~ 47 (60)
..+...|.|.+...
T Consensus 63 ~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 63 WNSGDEYSCRVTHE 76 (83)
T ss_dssp TTTTGGEEEEEEET
T ss_pred CCCCCEEEEEEEEC
Confidence 44455899987654
No 186
>KOG3515|consensus
Probab=74.53 E-value=9.6 Score=22.85 Aligned_cols=30 Identities=37% Similarity=0.210 Sum_probs=23.9
Q ss_pred EEEccCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12428 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCK 56 (60)
Q Consensus 27 l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~ 56 (60)
....++...|.|.|.|.+.|+.|.......
T Consensus 460 ~s~~~v~~~d~g~y~~tatns~gg~~~~~~ 489 (741)
T KOG3515|consen 460 GSGVNVSRSDGGSYGLTATNSPGGAQAYLL 489 (741)
T ss_pred cccceeeeccCCcceeeeccCCCceeeEEe
Confidence 335668889999999999999887766544
No 187
>PHA03283 envelope glycoprotein E; Provisional
Probab=73.02 E-value=16 Score=21.14 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=26.4
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12428 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59 (60)
Q Consensus 25 ~~l~i~~~~~~d~g~y~c~~~n~~g~~~~~~~l~v 59 (60)
..|.|.++...+.|.|+-...+..+.......|.|
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtV 168 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTV 168 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEe
Confidence 36999999999999999988876654444445544
No 188
>PHA03240 envelope glycoprotein M; Provisional
Probab=71.68 E-value=8.1 Score=19.64 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy12428 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50 (60)
Q Consensus 14 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~g~ 50 (60)
.++..... ++.|.|.++..+|.|+|.-......|.
T Consensus 96 t~i~y~C~--NstL~i~~vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 96 SFILYECH--NSTLIIAHLNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred CceEEEec--cceEEEEEEeecCcchhhhccCCCCCC
Confidence 34444433 347999999999999996554444443
No 189
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=71.63 E-value=7.9 Score=17.13 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=7.0
Q ss_pred EEEEEEEcC
Q psy12428 39 VYVCTATNS 47 (60)
Q Consensus 39 ~y~c~~~n~ 47 (60)
.|.|.+...
T Consensus 83 ~ytC~V~H~ 91 (111)
T cd05772 83 QVTCEVQHR 91 (111)
T ss_pred ceEEEEEeC
Confidence 599987665
No 190
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=64.28 E-value=11 Score=16.15 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=8.8
Q ss_pred CCeEEEEEEEcC
Q psy12428 36 DEGVYVCTATNS 47 (60)
Q Consensus 36 d~g~y~c~~~n~ 47 (60)
+...|.|.+...
T Consensus 77 ~~~~~sC~V~H~ 88 (100)
T cd07699 77 KHKVYTCEVTHE 88 (100)
T ss_pred CCCeEEEEEEec
Confidence 356899987654
No 191
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=57.24 E-value=16 Score=15.71 Aligned_cols=24 Identities=4% Similarity=0.023 Sum_probs=15.0
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCc
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
.|.+......+...+.|.+.+..-
T Consensus 60 ~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 60 EYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred EEEEecCHHHCCCEEEEEEeCccc
Confidence 355433334445599999998753
No 192
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=56.02 E-value=16 Score=15.27 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEccCCCCCCeEEEEEE-EcCCcc
Q psy12428 26 SLQIQEVFPEDEGVYVCTA-TNSLGT 50 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~-~n~~g~ 50 (60)
......+...|.|...|.+ .+..-.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~ 69 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKE 69 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEE
Confidence 3566777889999999999 555433
No 193
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=54.95 E-value=18 Score=15.63 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=8.2
Q ss_pred CCeEEEEEEEcC
Q psy12428 36 DEGVYVCTATNS 47 (60)
Q Consensus 36 d~g~y~c~~~n~ 47 (60)
+...|.|.+.-.
T Consensus 79 ~~~~ytC~V~H~ 90 (102)
T cd05768 79 AGDVFTCVVGHE 90 (102)
T ss_pred CCCcEEEEeEeC
Confidence 345799987654
No 194
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=54.73 E-value=18 Score=15.49 Aligned_cols=24 Identities=4% Similarity=0.075 Sum_probs=14.8
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCc
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLG 49 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g 49 (60)
.|.+......+...++|.+.+..-
T Consensus 60 ~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 60 EYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred EEEEecCHHHCCCEEEEEEeCccc
Confidence 354433333444599999988753
No 195
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=54.44 E-value=25 Score=17.01 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.3
Q ss_pred EEEEccCCCCCCeEEEEEEEcC
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.|.|.+....|+|.|.-...-.
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred EEEeCCCCcccceEEEEEEEEC
Confidence 5899999999999998875433
No 196
>PF15096 G6B: G6B family
Probab=54.17 E-value=16 Score=18.26 Aligned_cols=16 Identities=19% Similarity=0.584 Sum_probs=12.4
Q ss_pred CCCCCCeEEEEEEEcC
Q psy12428 32 VFPEDEGVYVCTATNS 47 (60)
Q Consensus 32 ~~~~d~g~y~c~~~n~ 47 (60)
+...|+|++.|.....
T Consensus 81 Ls~GDSGTFfCkGr~e 96 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQE 96 (224)
T ss_pred hhcCCccceEecCccc
Confidence 3578999999986544
No 197
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=52.99 E-value=11 Score=12.39 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=7.7
Q ss_pred CeEEEEEEEcCCc
Q psy12428 37 EGVYVCTATNSLG 49 (60)
Q Consensus 37 ~g~y~c~~~n~~g 49 (60)
.|...|+..|..|
T Consensus 17 ~g~v~~wG~n~~G 29 (30)
T PF13540_consen 17 DGEVYCWGDNNYG 29 (30)
T ss_dssp TTEEEEEE--TTS
T ss_pred CCCEEEEcCCcCC
Confidence 4677788877765
No 198
>PHA03282 envelope glycoprotein E; Provisional
Probab=52.26 E-value=45 Score=19.31 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=17.2
Q ss_pred EEEEccCCCCCCeEEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTA 44 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~ 44 (60)
+|.|.++..+|.|.|.-..
T Consensus 125 tl~l~~a~~~DsG~Y~L~~ 143 (540)
T PHA03282 125 TLVLREARETDSGMYVLSV 143 (540)
T ss_pred eEEEeeccccCCceEEEEe
Confidence 5999999999999999874
No 199
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=48.46 E-value=24 Score=15.06 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=9.4
Q ss_pred CCeEEEEEEEcCC
Q psy12428 36 DEGVYVCTATNSL 48 (60)
Q Consensus 36 d~g~y~c~~~n~~ 48 (60)
+...|.|.+....
T Consensus 74 ~~~~ytC~V~H~~ 86 (94)
T cd05847 74 SGKTYTCKVTHQG 86 (94)
T ss_pred CCCeEEEEEEECC
Confidence 4568999987653
No 200
>PHA03286 envelope glycoprotein E; Provisional
Probab=41.92 E-value=70 Score=18.50 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=26.3
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEE-EEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTV 59 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~~-~~l~v 59 (60)
.|.|.+.....+|.|+-...|.-+..... ..+.|
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV 162 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWV 162 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEE
Confidence 69999999999999999988886665444 33443
No 201
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=40.75 E-value=70 Score=18.17 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=16.7
Q ss_pred EEEEccCCCCCCeEEEEEE-EcCCc
Q psy12428 26 SLQIQEVFPEDEGVYVCTA-TNSLG 49 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~-~n~~g 49 (60)
.|.+.++...++|.|.|+. .|+.-
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~nghv 294 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYYNGHV 294 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEETTEE
T ss_pred ceEecCCCcccCceEEEEEEECCee
Confidence 5899999999999999985 45543
No 202
>PHA03290 envelope glycoprotein I; Provisional
Probab=40.12 E-value=66 Score=17.75 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.9
Q ss_pred EEEEccCCCCCCeEEEEEEEc
Q psy12428 26 SLQIQEVFPEDEGVYVCTATN 46 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n 46 (60)
.|.|.+....|+|.|.-...-
T Consensus 130 LL~I~~P~~~DSGiY~LRV~L 150 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQL 150 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEe
Confidence 589999999999999887543
No 203
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=38.63 E-value=19 Score=12.67 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=8.3
Q ss_pred CCCCCCeEEEEE
Q psy12428 32 VFPEDEGVYVCT 43 (60)
Q Consensus 32 ~~~~d~g~y~c~ 43 (60)
....+.|.|.|.
T Consensus 18 ~~~~~dG~~yC~ 29 (36)
T PF11781_consen 18 WFYSDDGFYYCD 29 (36)
T ss_pred EeEccCCEEEhh
Confidence 345667889884
No 204
>PHA03292 envelope glycoprotein I; Provisional
Probab=36.55 E-value=82 Score=17.78 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.4
Q ss_pred EEEEccCCCCCCeEEEEEEEcC
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.|.|.+....|.|.|.-.+.-.
T Consensus 129 LL~I~~P~~~DSGiY~LRV~Ld 150 (413)
T PHA03292 129 LLNITGPQPADSGAYILRVKLD 150 (413)
T ss_pred EEEeCCCCcccceeEEEEEEeC
Confidence 5899999999999998876543
No 205
>PHA03289 envelope glycoprotein I; Provisional
Probab=36.44 E-value=77 Score=17.44 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=18.3
Q ss_pred EEEEccCCCCCCeEEEEEEEcC
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.|.|.+....|+|.|.-...-.
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ld 144 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLA 144 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeC
Confidence 6899999999999998876443
No 206
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=34.13 E-value=49 Score=14.50 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=9.4
Q ss_pred CCCCeEEEEEEE-cCC
Q psy12428 34 PEDEGVYVCTAT-NSL 48 (60)
Q Consensus 34 ~~d~g~y~c~~~-n~~ 48 (60)
..-.|.|.|... +.-
T Consensus 72 s~~~GayyCegk~r~~ 87 (96)
T PF10430_consen 72 SEAIGAYYCEGKVRDE 87 (96)
T ss_dssp SS--EEEEEEEEETTE
T ss_pred ccccceEEEEEEecCc
Confidence 344799999977 443
No 207
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=33.50 E-value=39 Score=13.20 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=8.6
Q ss_pred CeEEEEEEEcCCc
Q psy12428 37 EGVYVCTATNSLG 49 (60)
Q Consensus 37 ~g~y~c~~~n~~g 49 (60)
+..+.|..+|.-|
T Consensus 10 snsflctvqnkng 22 (65)
T PF13220_consen 10 SNSFLCTVQNKNG 22 (65)
T ss_pred CCceEEEEecccH
Confidence 3467788777654
No 208
>PF03038 Herpes_UL95: UL95 family; InterPro: IPR004280 Members of this family are functionally uncharacterised proteins from herpesviruses.
Probab=31.65 E-value=74 Score=17.56 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=24.4
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEE
Q psy12428 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCT 43 (60)
Q Consensus 14 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 43 (60)
++|++..++..+.|.+.++.+.|.......
T Consensus 35 ~qFkLIETP~nsFLLVTNVlP~d~~~~~~~ 64 (348)
T PF03038_consen 35 GQFKLIETPINSFLLVTNVLPKDTRPWKSE 64 (348)
T ss_pred cceeEeecCCCceEEEeccCCCCCCCcccc
Confidence 789888777777999999999987766554
No 209
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=29.23 E-value=66 Score=14.45 Aligned_cols=11 Identities=9% Similarity=0.362 Sum_probs=7.8
Q ss_pred CeEEEEEEEcC
Q psy12428 37 EGVYVCTATNS 47 (60)
Q Consensus 37 ~g~y~c~~~n~ 47 (60)
...|.|.+.-.
T Consensus 81 ~~~ytC~V~H~ 91 (115)
T cd05769 81 RNTFTCIVQFY 91 (115)
T ss_pred CCeEEEEEEEe
Confidence 45899987544
No 210
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=28.71 E-value=13 Score=15.12 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=2.1
Q ss_pred EEEccCCCCCCeEEEE
Q psy12428 27 LQIQEVFPEDEGVYVC 42 (60)
Q Consensus 27 l~i~~~~~~d~g~y~c 42 (60)
+.+.+....|.|.|.-
T Consensus 31 f~iyR~rkkdEGSY~l 46 (64)
T PF01034_consen 31 FLIYRMRKKDEGSYDL 46 (64)
T ss_dssp ------S------SS-
T ss_pred HHHHHHHhcCCCCccC
Confidence 5666777888887753
No 211
>PHA03291 envelope glycoprotein I; Provisional
Probab=28.41 E-value=1.2e+02 Score=17.08 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=18.4
Q ss_pred EEEEccCCCCCCeEEEEEEEcC
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNS 47 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~ 47 (60)
.|.|.+....|.|.|.-.+.-.
T Consensus 130 LL~i~~P~~~DsGiYvLRV~vd 151 (401)
T PHA03291 130 LLRARGAARAVVGLYVLRVWVE 151 (401)
T ss_pred EEEecCCCcccceeEEEEEEeC
Confidence 5899999999999999876544
No 212
>PHA03281 envelope glycoprotein E; Provisional
Probab=25.86 E-value=1.6e+02 Score=17.75 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=24.5
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEEE
Q psy12428 26 SLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTV 59 (60)
Q Consensus 26 ~l~i~~~~~~d~g~y~c~~~n~~g~~~~-~~~l~v 59 (60)
.|.|.++....+|.|+--.....|.... ...+.|
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtV 333 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKL 333 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEe
Confidence 6899999999999999877665553333 444444
No 213
>PRK05508 methionine sulfoxide reductase B; Provisional
Probab=24.25 E-value=66 Score=14.84 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=10.0
Q ss_pred CCCCCeEEEEEEEc
Q psy12428 33 FPEDEGVYVCTATN 46 (60)
Q Consensus 33 ~~~d~g~y~c~~~n 46 (60)
...+.|.|.|....
T Consensus 27 ~~~~~G~Y~C~~Cg 40 (119)
T PRK05508 27 DFFEKGTYVCKQCG 40 (119)
T ss_pred CcCCCeEEEecCCC
Confidence 44568999998643
No 214
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=24.22 E-value=73 Score=13.28 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=8.7
Q ss_pred CeEEEEEEEcC
Q psy12428 37 EGVYVCTATNS 47 (60)
Q Consensus 37 ~g~y~c~~~n~ 47 (60)
...|-|.+.|.
T Consensus 62 stDYAcIa~~k 72 (74)
T PF05083_consen 62 STDYACIAKNK 72 (74)
T ss_pred CcCeeeeeccC
Confidence 45899999875
No 215
>PRK00222 methionine sulfoxide reductase B; Provisional
Probab=23.31 E-value=63 Score=15.39 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=10.0
Q ss_pred CCCCCeEEEEEEEc
Q psy12428 33 FPEDEGVYVCTATN 46 (60)
Q Consensus 33 ~~~d~g~y~c~~~n 46 (60)
...+.|.|.|.+..
T Consensus 37 ~~~~~G~Y~C~~Cg 50 (142)
T PRK00222 37 DNKEKGIYVCIVCG 50 (142)
T ss_pred CCCCCeEEEecCCC
Confidence 45678999998643
No 216
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=23.06 E-value=84 Score=13.57 Aligned_cols=9 Identities=11% Similarity=0.383 Sum_probs=6.8
Q ss_pred eEEEEEEEc
Q psy12428 38 GVYVCTATN 46 (60)
Q Consensus 38 g~y~c~~~n 46 (60)
..|.|.+.-
T Consensus 75 ~~ysC~V~H 83 (96)
T cd07697 75 KKFRCIYKH 83 (96)
T ss_pred CeEEEEEEE
Confidence 459998765
No 217
>TIGR00357 methionine-R-sulfoxide reductase. This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.
Probab=21.45 E-value=72 Score=15.05 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=9.9
Q ss_pred CCCCCeEEEEEEEc
Q psy12428 33 FPEDEGVYVCTATN 46 (60)
Q Consensus 33 ~~~d~g~y~c~~~n 46 (60)
...+.|.|.|.+..
T Consensus 34 ~~~~~G~Y~C~~Cg 47 (134)
T TIGR00357 34 DNKEEGIYVDITCG 47 (134)
T ss_pred CCCCCeEEEccCCC
Confidence 34567999998643
No 218
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=21.03 E-value=55 Score=15.97 Aligned_cols=10 Identities=40% Similarity=1.139 Sum_probs=8.1
Q ss_pred CCCCeEEEEE
Q psy12428 34 PEDEGVYVCT 43 (60)
Q Consensus 34 ~~d~g~y~c~ 43 (60)
..|.|.|.|.
T Consensus 134 S~dAG~YlCn 143 (194)
T cd00501 134 SNDAGTYLCN 143 (194)
T ss_pred cCCCCceeeH
Confidence 5678999994
No 219
>KOG0856|consensus
Probab=20.50 E-value=1e+02 Score=14.75 Aligned_cols=13 Identities=46% Similarity=0.897 Sum_probs=9.6
Q ss_pred CCCCeEEEEEEEc
Q psy12428 34 PEDEGVYVCTATN 46 (60)
Q Consensus 34 ~~d~g~y~c~~~n 46 (60)
.-+.|.|.|....
T Consensus 49 ~~e~GvY~C~~C~ 61 (146)
T KOG0856|consen 49 HFEEGVYVCAGCG 61 (146)
T ss_pred ccCCceEEEeecC
Confidence 3477999998654
Done!