RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12428
(60 letters)
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 76.2 bits (188), Expect = 2e-20
Identities = 14/59 (23%), Positives = 21/59 (35%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
D I S + + +G SL +D+G Y A N G +L V+
Sbjct: 43 FKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 75.8 bits (187), Expect = 2e-20
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ L G L+I + D G+Y CT NS G+ + CKLT++
Sbjct: 46 AITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 74.0 bits (182), Expect = 1e-19
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
K +N + N+ I + G +L I++V +D G Y +A N G +L V
Sbjct: 50 KRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 73.1 bits (180), Expect = 2e-19
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ + + + G+ L+I D G Y C A N G + + +L VR
Sbjct: 40 LRNRQPVR-PDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 72.8 bits (179), Expect = 3e-19
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L +S L L + P D GVYVC A N+ G A +TV
Sbjct: 53 QLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 72.3 bits (178), Expect = 4e-19
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
H+ + L S+ + +GV +L+I + +D G Y TN G A L V
Sbjct: 44 HNG--VELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 71.9 bits (177), Expect = 5e-19
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ I S I ++ V L I++V ED + A N G + L V+
Sbjct: 41 KNGVKIE-RSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 71.6 bits (176), Expect = 8e-19
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L +S ++ Y++GVA L ++++ D+G Y C N G + +L V+
Sbjct: 42 QLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 71.2 bits (175), Expect = 1e-18
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
DN T+ +S + K+G +L I+ V EDEG+Y C A + LG A+ + +
Sbjct: 46 KDNETLVEDS----GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 70.8 bits (174), Expect = 2e-18
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L++S + ++ +I V DEG Y NS G E + LT++
Sbjct: 54 VLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 70.1 bits (172), Expect = 4e-18
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D + S L +NGV SL I+ V D G+Y C ATN G +L V
Sbjct: 45 LDGKPVR-PDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 69.3 bits (170), Expect = 8e-18
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ GVA L IQ+ PED G Y C A N+LG +TV
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 68.9 bits (169), Expect = 1e-17
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ T+ + + + G+ SL + V D G Y C A N G A +L V
Sbjct: 41 LNGRTVQ-SDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 68.5 bits (168), Expect = 1e-17
Identities = 10/58 (17%), Positives = 22/58 (37%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
I ++ + + +L I +V +D G+Y + N G+ + +R
Sbjct: 41 CGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 69.1 bits (169), Expect = 3e-17
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 9 PLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
P+ S + Y + G SL I EV +D+ Y C A NSLG A +L V
Sbjct: 81 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 69.7 bits (171), Expect = 4e-17
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
D I ++ + + + +G A L I V + G Y ATN G A + +L V+
Sbjct: 41 RDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVK 98
Score = 63.6 bits (155), Expect = 7e-15
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
D + + SS + + + SL I E +PED G Y ATNS+G A + +L V+
Sbjct: 138 YRDGA--EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 66.7 bits (163), Expect = 5e-16
Identities = 15/57 (26%), Positives = 20/57 (35%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
I + ++K G L I V +D VY ATN G+ L V
Sbjct: 40 RQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
Score = 57.0 bits (138), Expect = 2e-12
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ I N+ + + ++ + + V +D G YV A N G + +L V
Sbjct: 139 QKGQDLID-NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 65.9 bits (161), Expect = 1e-15
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L S + +L + EDEGVY C ATN +G ET KL +
Sbjct: 47 ELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97
Score = 52.4 bits (126), Expect = 2e-10
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTVR 60
H + NS NI ++ L ++ V G Y +N GT + + ++
Sbjct: 138 FHGQKLLQ-NSENIT-IENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 63.2 bits (154), Expect = 2e-15
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ I K +N SL ++ V P D+G Y C N G+ L V
Sbjct: 44 KNGKEFK-QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 65.5 bits (160), Expect = 5e-15
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ + A+L + +V D G Y C A+N G +L V+
Sbjct: 45 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
Score = 62.4 bits (152), Expect = 5e-14
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ S+ + + VA L++ + ED G Y C A N+ G+A + L V+
Sbjct: 139 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 190
Score = 61.7 bits (150), Expect = 1e-13
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
D L S + +N + S+ I V D G Y C A+N +G+ +T++
Sbjct: 227 HKDKR--ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 63.7 bits (155), Expect = 1e-14
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ S+ + LQI E P D+G YV + + L+ +
Sbjct: 43 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94
Score = 61.4 bits (149), Expect = 7e-14
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + + + A I V D G Y N G+ + ++V
Sbjct: 152 LKNEKALA-QTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 61.2 bits (149), Expect = 1e-14
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ S + ++ + L I E G Y N LG+ + + LTV
Sbjct: 47 QIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 64.0 bits (156), Expect = 2e-14
Identities = 15/59 (25%), Positives = 20/59 (33%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
I + ++K G L I V +D VY ATN G+ L V
Sbjct: 39 YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 46.3 bits (110), Expect = 3e-08
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 9 PLNSSNILDLKYKNGVAS-LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
++++ + S + V +D G YV A N G + +L V
Sbjct: 144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 58.9 bits (143), Expect = 7e-14
Identities = 11/52 (21%), Positives = 18/52 (34%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ L + K+ S+ D G Y N LG E ++ V+
Sbjct: 42 GAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 62.2 bits (151), Expect = 7e-14
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+K+G+ +L I E +D G+Y + G +++ KL
Sbjct: 55 DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 96
Score = 59.5 bits (144), Expect = 8e-13
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + + + A I V D G Y N G+ + ++V
Sbjct: 257 LKNEKALA-SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 58.4 bits (141), Expect = 2e-12
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ S+ + LQI E P D+G YV + + L+ +
Sbjct: 148 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 199
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 62.3 bits (151), Expect = 8e-14
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D I ++ +K+G+ +L I E +D G+Y + G +++ KL
Sbjct: 257 YKDEREISVDE----KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 58.8 bits (142), Expect = 2e-12
Identities = 9/58 (15%), Positives = 20/58 (34%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ I + + G+ + ++++ EDEG Y + T + L
Sbjct: 144 FNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGD 201
Score = 50.8 bits (121), Expect = 1e-09
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 55
S L+++ K + +++ +D G+Y C T++ G A +
Sbjct: 42 STEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 59.0 bits (143), Expect = 1e-13
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ D + S I + +NG LQI+ D G Y C A+ G A + V+
Sbjct: 43 RKDGVLVSTQDSRIK--QLENG--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 62.3 bits (151), Expect = 1e-13
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ +L+ + K +L I++ ED G Y+C NS+G + LTV
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340
Score = 56.1 bits (135), Expect = 2e-11
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 2 KHDNSTIPLNSS-NILDLKYKNG--VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58
+ D I N + NG V+ L I V D G+Y C A + +G AE KL
Sbjct: 464 ELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN 523
Query: 59 VR 60
V
Sbjct: 524 VY 525
Score = 52.6 bits (126), Expect = 3e-10
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
D I I + + L I+ V G + C A N G + L V
Sbjct: 655 TLDGQAIS-EDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712
Score = 51.5 bits (123), Expect = 6e-10
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 20 YKNGV------ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K+G + L+I+ V ED+G+Y C N +AE +L +
Sbjct: 378 MKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 423
Score = 49.5 bits (118), Expect = 3e-09
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 2 KHDNSTIPLNSSNI-LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K P ++ + +L + + +EG Y+C A N +G+ + +
Sbjct: 749 KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
Score = 43.4 bits (102), Expect = 4e-07
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEV-FPEDEGVYVCTATNSLG-TAETKCKLTV 59
+ DN +P+N + + NG +L I+ V D+ Y C A N G +A ++ V
Sbjct: 561 ERDNRALPINRKQKV---FPNG--TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQV 615
Query: 60 R 60
Sbjct: 616 M 616
Score = 38.8 bits (90), Expect = 2e-05
Identities = 2/33 (6%), Positives = 9/33 (27%)
Query: 27 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + + ++ A + G+
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPD 33
Score = 38.4 bits (89), Expect = 2e-05
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPED------EGVYVCTATNSLGTAETK 54
++ D + + L+ + L ED VY C A N G+ ++
Sbjct: 74 IRSDGTAVGDVP----GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 129
Score = 34.1 bits (78), Expect = 0.001
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 26 SLQIQEVFPED-EGVYVCTATNSLGTAETKCKLTVR 60
L I+EV PED Y C + L R
Sbjct: 200 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 59.9 bits (145), Expect = 2e-13
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D I ++ +K+G+ +L I E +D G+Y + G +++ KL
Sbjct: 152 YKDEREISVDEK----HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 52.6 bits (126), Expect = 1e-10
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ I + + G+ + ++++ EDEG Y + T + L
Sbjct: 39 FNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVG 95
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 57.0 bits (138), Expect = 5e-13
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ T P + G +LQI+ + D G Y C AT+S G L V
Sbjct: 43 LKEGFTFPGRDPRAT--IQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 60.3 bits (146), Expect = 5e-13
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ +L+ + K +L I++ ED G Y+C NS+G + LTV
Sbjct: 247 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
Score = 51.1 bits (122), Expect = 7e-10
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 20 YKNGVA------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K+G A L+I+ V ED+G+Y C N +AE +L +
Sbjct: 342 MKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 38.4 bits (89), Expect = 2e-05
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPED------EGVYVCTATNSLGTAETK 54
++ D + + +G L ED VY C A N G+ ++
Sbjct: 39 IRSDGTAVGDVPGLRQISS--DG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 94
Score = 36.1 bits (83), Expect = 2e-04
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 26 SLQIQEVFPED-EGVYVCTATNSLG 49
L I+EV PED Y C + L
Sbjct: 165 ELHIREVGPEDGYKSYQCRTKHRLT 189
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 59.1 bits (143), Expect = 7e-13
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ I K +N SL ++ V P D+G Y C N G+ L V
Sbjct: 55 KNGKEFK-QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 110
Score = 54.5 bits (131), Expect = 3e-11
Identities = 14/58 (24%), Positives = 21/58 (36%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K+ +P + L + V D G Y+C +N +G A LTV
Sbjct: 162 KYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 59.4 bits (144), Expect = 9e-13
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ + A+L + +V D G Y C A+N G +L V+
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Score = 59.4 bits (144), Expect = 9e-13
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 8 IPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L S+ +++KN VASL I +V D G Y C A NS+G + L ++
Sbjct: 44 TKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK 96
Score = 58.7 bits (142), Expect = 2e-12
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D I S NI + Y +A+LQ P + G Y C N GT E L+V
Sbjct: 512 FKDKGEIVRESDNIW-ISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 58.3 bits (141), Expect = 3e-12
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ S+ + + VA L++ + ED G Y C A N+ G+A + L V+
Sbjct: 331 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 382
Score = 57.5 bits (139), Expect = 4e-12
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L S + +N + S+ I V D G Y C A+N +G+ +T++
Sbjct: 424 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Score = 54.4 bits (131), Expect = 5e-11
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
D + +++ + +LQI + G Y C+A+N LGTA + KLT+
Sbjct: 136 YKDGELLKDDANLQTSFIHNVA--TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLS 192
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 58.7 bits (142), Expect = 9e-13
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 2 KHDNSTIPLNSSNI-LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTV 59
D + +++N + + +LQI++ D+G Y C ATNS GT + L V
Sbjct: 143 FKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
Query: 60 R 60
R
Sbjct: 203 R 203
Score = 56.4 bits (136), Expect = 6e-12
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 9 PLNSSNILDLKYKNG-VASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTV 59
+++ +++ +G + L+IQ + P DE +Y C A+N++G +LTV
Sbjct: 46 KVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTV 98
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 58.9 bits (142), Expect = 1e-12
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ I +K ++ SL ++ V P D G Y C N G+ L V
Sbjct: 159 KNGREFR-GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 214
Score = 53.5 bits (128), Expect = 1e-10
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ L + V ED G Y C A NS+G + L V
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 47.3 bits (112), Expect = 2e-08
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 6/58 (10%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D + + + + G LQ+ ED G Y C +
Sbjct: 44 VKDGTGLVPSE------RVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVT 95
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 55.4 bits (134), Expect = 2e-12
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L + L+ + + L ++ + P+D G Y C+ G T LTV
Sbjct: 47 VLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVT 94
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 58.3 bits (141), Expect = 2e-12
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L S +Y L I V +D+G Y A NS GT E L V
Sbjct: 522 ELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 57.6 bits (139), Expect = 3e-12
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ I +K ++ SL ++ V P D G Y C N G+ L V
Sbjct: 51 KNGREFR-GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106
Score = 54.9 bits (132), Expect = 2e-11
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L++ V D G Y+C ATN +G AE L+V
Sbjct: 179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 56.8 bits (137), Expect = 3e-12
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ +P + + A L+I + EDEG+Y C A N G + + ++ V+
Sbjct: 148 RKVLEPMPSTA------EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 46.0 bits (109), Expect = 3e-08
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + + + NG +L I V D+G Y C ++ T K
Sbjct: 45 LLNEFPVFITMDKRRFVSQTNG--NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP 100
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 55.1 bits (133), Expect = 3e-12
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 8 IPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ L SN + + +++Q+ P D G+Y C ++ G+ T + V
Sbjct: 41 VQLAESN----RTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 58.0 bits (140), Expect = 3e-12
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+P + + K++N +L+I V ED G Y C A+N +G+ + V+
Sbjct: 257 YKKGGDLPSDKA-----KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 310
Score = 50.6 bits (121), Expect = 1e-09
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
++ ++ VY C +N G ++V
Sbjct: 368 TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 43.3 bits (102), Expect = 5e-07
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFP----EDEGVYVCTATNSLGTAET 53
++ + + ++ ++G +L I E EG Y C A N GTA +
Sbjct: 52 TRNSRFFNIAKDPRVSMRRRSG--TLVIDFRSGGRPEEYEGEYQCFARNKFGTALS 105
Score = 34.8 bits (80), Expect = 5e-04
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPED-EGVYVCTATNSLGTA 51
+ + + NG L V +D + Y C A
Sbjct: 152 MSSSMEPITQDKRVS--QGHNG--DLYFSNVMLQDMQTDYSCNARFHFTHT 198
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 56.7 bits (137), Expect = 3e-12
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ I N IL K L ++ + D G YVC ATN G E + L V
Sbjct: 133 FRNGKLIEENEKYIL----KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 42.8 bits (101), Expect = 5e-07
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ N + S N N +LQI + DEG+Y C + V
Sbjct: 37 LYHNEEVTTISDNRF-AMLANN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 91
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 54.6 bits (132), Expect = 4e-12
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ S D+ + +A L I+ +D G Y C S TA L V
Sbjct: 47 AIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS----LHVE 94
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 57.5 bits (138), Expect = 4e-12
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
DN T+ +S + K+G +L I+ V EDEG+Y C A + LG A+ + +
Sbjct: 701 FKDNETLVEDS----GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 50.9 bits (121), Expect = 9e-10
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ K +++L I V D+G+Y C A++ L T + + V
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 324
Score = 49.0 bits (116), Expect = 5e-09
Identities = 8/59 (13%), Positives = 18/59 (30%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ +N + + + +L I +V D G Y C + + +
Sbjct: 62 LWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Score = 47.1 bits (111), Expect = 2e-08
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
N + + N + ++++ +D+G YVC A + +
Sbjct: 604 KNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL 659
Score = 47.1 bits (111), Expect = 3e-08
Identities = 9/56 (16%), Positives = 13/56 (23%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ N L + +Y C A N +G E V
Sbjct: 492 QGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV 547
Score = 45.9 bits (108), Expect = 5e-08
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ + ++ I L I EV D G Y TN + + +++
Sbjct: 366 KNGIPLE-SNHTIKA------GHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416
Score = 44.7 bits (105), Expect = 1e-07
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
++ + + I + I G+ C A + + ++ + V
Sbjct: 164 RYPEKRFVPDGNRIS----WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218
Score = 36.7 bits (84), Expect = 1e-04
Identities = 4/31 (12%), Positives = 10/31 (32%)
Query: 29 IQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+Q +++C T + L +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL 31
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 55.4 bits (133), Expect = 5e-12
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L+ +I +++ +++ I + ED G Y C A+N V+
Sbjct: 67 SQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 56.4 bits (136), Expect = 5e-12
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ I N IL K L ++ + D G YVC ATN G E + L V
Sbjct: 40 RNGKLIEENEKYIL----KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Score = 56.4 bits (136), Expect = 5e-12
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 1 MKHDNSTIPLNSSNILDLKY----KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 56
+ + LD + ++G +SL I++V D G Y C A + +G +
Sbjct: 129 KRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY 188
Query: 57 LTV 59
L +
Sbjct: 189 LDI 191
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 57.1 bits (138), Expect = 5e-12
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 1 MKHDNSTIPLNSSNILDLKYK----NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 56
+ + LD + + +G +SL I++V D G Y C A + +G +
Sbjct: 35 KRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY 94
Query: 57 LTVR 60
L +
Sbjct: 95 LDIE 98
Score = 55.6 bits (134), Expect = 2e-11
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ D +P ++ L L+I D G Y CTATN +GT + L +
Sbjct: 135 RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 57.2 bits (138), Expect = 5e-12
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVR 60
+ + N + + + L + PEDEGVY C N +G + KLTV
Sbjct: 247 FKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306
Score = 51.1 bits (122), Expect = 8e-10
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 11/51 (21%)
Query: 20 YKNGVA-----------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
N L I+ V D+G Y C ATN G + + V
Sbjct: 344 SHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 48.8 bits (116), Expect = 5e-09
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
K D + N + SL DEG Y C A G A ++
Sbjct: 42 KKDGKSYNWQEHNAA---LRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR 91
Score = 34.5 bits (79), Expect = 7e-04
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 1 MKHDNSTIPLNSSNILDLKYK---NGVASLQIQEVFPEDE---GVYVCTATNSLGTAET 53
K + P D + +G +L V ED YVCTA N+ E
Sbjct: 136 KKRLSGADPNADVTDFDRRITAGPDG--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV 192
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 54.0 bits (130), Expect = 7e-12
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ N +P + NG L I+ V P D G YVCT +N + L V+
Sbjct: 46 TRLHNGKLPSRAM------DFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 56.0 bits (135), Expect = 9e-12
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTVR 60
+ + + +++ K+G LQI+ ED+G Y C A NS+GT +K L V+
Sbjct: 145 IKNQTKVDMSNPRYS---LKDG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199
Score = 51.7 bits (124), Expect = 4e-10
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTATNSLGTA-ETKCKLTV 59
+ + S L+ G++ L+I+ V D+ Y C A N +G A LT+
Sbjct: 42 KNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI 100
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 56.4 bits (136), Expect = 1e-11
Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
I L S L G ++L I V +D G Y C T +LTV
Sbjct: 256 LRGEEVIQLRSKKYSLL----GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL 310
Score = 50.6 bits (121), Expect = 1e-09
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+L+I V DEG Y C A N G A++ +L V
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 45.6 bits (108), Expect = 7e-08
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTVR 60
+ + + + + +G +LQI + P D GVY C+A N T ++ +
Sbjct: 156 QKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Score = 37.9 bits (88), Expect = 4e-05
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNG---VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58
K D + L + NG + ++ DEG+Y C A+ +
Sbjct: 57 KKDGLILALGMDDRKQQ-LPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115
Query: 59 VR 60
V
Sbjct: 116 VM 117
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 56.1 bits (135), Expect = 1e-11
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+K ++ + + ++ Y V +L + V +D G+Y C A+N +GT V
Sbjct: 221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Score = 44.9 bits (106), Expect = 1e-07
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+L + ++ G Y CT T L V+
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVK 86
Score = 38.4 bits (89), Expect = 3e-05
Identities = 6/53 (11%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
+ L + + I++ D YVC + + +
Sbjct: 125 MREGGRQVLRKTVYF----FSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTST 173
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 56.0 bits (135), Expect = 1e-11
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ I N IL L ++ + D G YVC ATN G E + L V
Sbjct: 229 FRNGKLIEENEKYILK----GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 53.3 bits (128), Expect = 1e-10
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 59
+ S+ + ++ + + L I ED G+Y C AT++ G + L +
Sbjct: 44 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 95
Score = 43.7 bits (103), Expect = 3e-07
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN-SLGTAETKCKLTV 59
+ N + S N + N +LQI + DEG+Y C + G + + + +
Sbjct: 133 LYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 56.0 bits (135), Expect = 1e-11
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTATNSLGTAETKCKLTV 59
+ ++ ++ A L+IQ + P DE VY C A NS+G KLTV
Sbjct: 41 NKKGKKVNSQRFETIEF-DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
Score = 51.7 bits (124), Expect = 4e-10
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
V ++ +D Y C A +SLG E ++TV+
Sbjct: 254 VGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVK 290
Score = 51.0 bits (122), Expect = 8e-10
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVR 60
D + ++SN + ++G +LQI+ D+G Y C ATNS G + L VR
Sbjct: 143 FKDFLPVDPSASNGRIKQLRSG--ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR 200
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 55.7 bits (134), Expect = 2e-11
Identities = 15/57 (26%), Positives = 21/57 (36%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D I + + + + L I+ V DE YVC A N G + L V
Sbjct: 232 KDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 53.0 bits (127), Expect = 2e-10
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 59
+ + N I + + ++L I +D G+Y C T GT + +
Sbjct: 38 FSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
Score = 45.3 bits (107), Expect = 8e-08
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
KH + L + N LQI+ + DEG Y C + V
Sbjct: 135 KHKGRDVILKKDVRFIV-LSNN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 54.8 bits (132), Expect = 2e-11
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 59
+ S+ + ++ + + L I ED G+Y C AT++ G + L +
Sbjct: 42 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 93
Score = 49.4 bits (118), Expect = 2e-09
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ N + S N + N +LQI + DEG+Y C + V
Sbjct: 131 LYHNEEVTTISDNRFAM-LANN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 53.1 bits (128), Expect = 2e-11
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L + L+ LQI+ + ED G Y+C G T LTVR
Sbjct: 57 TLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVR 104
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 52.8 bits (127), Expect = 2e-11
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 9 PLNSSNILDLKYKNGV-----ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
LN S + K LQ+ + G Y A N G E +
Sbjct: 41 ILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 52.7 bits (127), Expect = 2e-11
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L +S + L I + D Y C G A+++ +L V+
Sbjct: 47 ELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQ 94
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 54.4 bits (131), Expect = 2e-11
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTVR 60
D + + + + ++ + L ++ V D G Y C + T ++ LTV
Sbjct: 37 VKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 96
Score = 41.3 bits (97), Expect = 2e-06
Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 7/42 (16%)
Query: 20 YKNGV-------ASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
++ + + ++ C A N G A ++
Sbjct: 134 WRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 55.0 bits (132), Expect = 3e-11
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+H+N+ + + + V +L + +V + G Y C A+N G T V
Sbjct: 222 QHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279
Score = 45.0 bits (106), Expect = 1e-07
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L ++ G Y CT L V+
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK 86
Score = 37.3 bits (86), Expect = 6e-05
Identities = 4/54 (7%), Positives = 12/54 (22%), Gaps = 5/54 (9%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
++ + +++ I Y C+A +
Sbjct: 125 VRVRGRPLMRHTNYSFSPW-----HGFTIHRAKFIQSQDYQCSALMGGRKVMSI 173
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin
fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP:
b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 54.1 bits (130), Expect = 3e-11
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTV 59
+ + N I + + ++L I +D G+Y C T GT + +
Sbjct: 38 FSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
Score = 51.4 bits (123), Expect = 4e-10
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
KH + L + N LQI+ + DEG Y C + V
Sbjct: 135 KHKGRDVILKKDVRFIV-LSNN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 53.1 bits (127), Expect = 3e-11
Identities = 8/43 (18%), Positives = 12/43 (27%)
Query: 17 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + +QI + G Y C T L V
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 55.2 bits (133), Expect = 3e-11
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ D I + + L+I ED G Y C A NS G K +LT
Sbjct: 241 RADGKPIARKA------RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 292
Score = 48.3 bits (115), Expect = 8e-09
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 12/52 (23%)
Query: 20 YKNGVA------------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
KNG +L I V D G+Y C A N G + +L+V
Sbjct: 330 LKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 43.7 bits (103), Expect = 4e-07
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ ++ + + G +L I +V D G Y C TN++ + T
Sbjct: 138 IFNEYPSYQDNRRFVSQE--TG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTP 191
Score = 41.7 bits (98), Expect = 2e-06
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTATNSLGTAETK 54
K + + + + + +G SL I +D G Y C ATNS GT ++
Sbjct: 43 KLNGTDVDIGMDFRYSVV--DG--SLLINNPNKTQDAGTYQCIATNSFGTIVSR 92
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 52.3 bits (126), Expect = 3e-11
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
P+ S+ L + K + L I EDEG YV K+ V
Sbjct: 45 PVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVI 94
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 52.1 bits (125), Expect = 4e-11
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+++++ P D G+Y C ++ G+ T + V
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 52.1 bits (125), Expect = 6e-11
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 9 PLNSSNILDLKYKNGV----ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
PL S I+ ++Y L + + G Y A N LGTA
Sbjct: 45 PLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 52.0 bits (125), Expect = 6e-11
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L LK LQI ++ D G Y C G T LTVR
Sbjct: 46 TLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC----GQERTSATLTVR 93
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 51.3 bits (123), Expect = 7e-11
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 11/58 (18%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D +PL S L + E+ P+D+G Y C AT+S + +++
Sbjct: 45 MKDGVPLPLPPSP-----------VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 51.2 bits (123), Expect = 9e-11
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ I + ++ + L I+ D Y T ++ KL+V
Sbjct: 42 KNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVD 95
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 51.6 bits (124), Expect = 1e-10
Identities = 4/58 (6%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + + ++ + + +++ D G Y + ++ V
Sbjct: 59 TKGGAPLDTSRVHV---RTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 52.9 bits (127), Expect = 1e-10
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D +P ++ + + + + L++ D G Y CTA N +G + L
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 52.4 bits (126), Expect = 1e-10
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTVR 60
SL+I V ED G Y C A NSLGTA +K KL V
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 48.2 bits (115), Expect = 5e-09
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 59
+ I L + + L I V D+G+Y CTA N +G A C L V
Sbjct: 43 RNKILIKLFDTRY---SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQV 97
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 50.8 bits (121), Expect = 1e-10
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 17 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D K + L I + P G Y C + + LTV
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 52.9 bits (127), Expect = 2e-10
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
K+ + L IQ V EDEG Y C A N G + ++ +
Sbjct: 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
Score = 50.2 bits (120), Expect = 2e-09
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
PL S N ++ G L+ ++ ED G+Y C A N GT +LTV+
Sbjct: 334 PLASQN--RIEVSGG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 44.1 bits (104), Expect = 3e-07
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + + + G +L I + D G Y C AT+ +
Sbjct: 137 LLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 192
Score = 41.0 bits (96), Expect = 3e-06
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTATNSLGTAETK 54
K + + + + + L G L I +D G Y C ATN+ GT ++
Sbjct: 42 KMNGTELKMGPDSRYRLV--AG--DLVISNPVKAKDAGSYQCVATNARGTVVSR 91
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 52.2 bits (125), Expect = 2e-10
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTVR 60
NSS + K L I + ED G Y C ATNS+G+A L VR
Sbjct: 137 ISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 44.1 bits (104), Expect = 2e-07
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ + N + +I + ED G Y C + + + + V+
Sbjct: 40 TKNGVELTATRKNASN-------MEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVK 90
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 50.5 bits (121), Expect = 2e-10
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ SS+ + L ++E P D G V + +K L VR
Sbjct: 49 TVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIVR 96
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 52.8 bits (126), Expect = 2e-10
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
++S + + ++G +L + ED G YVCT N+ + +L V
Sbjct: 61 KNDSARTVPGEEETRMWAQDG--ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRV 115
Score = 47.8 bits (113), Expect = 1e-08
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D+ + ++ L + G L + +V ED G Y C T + + ++
Sbjct: 160 YKDSLLLDKDNEKFLSV---RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI 214
Score = 43.5 bits (102), Expect = 4e-07
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 21 KNGVASLQIQEVFPEDEGV-YVCTATNSLGTAETKCKL 57
L V ED + + C N+L + +
Sbjct: 294 NYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 52.4 bits (125), Expect = 3e-10
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 2 KHDNSTIPLNSSNILDLKYKN---GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58
+ N T + + ++ V+ L + + + G Y +NS A +
Sbjct: 349 IYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY 408
Query: 59 VR 60
V
Sbjct: 409 VN 410
Score = 50.1 bits (119), Expect = 2e-09
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 2 KHDNSTIPLNSSNILDLKYKN---GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58
K +NS L A+L I D GV++C A N+ G+A L
Sbjct: 247 KRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLE 306
Query: 59 VR 60
V
Sbjct: 307 VV 308
Score = 48.5 bits (115), Expect = 7e-09
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 2 KHDNSTIPLNSSNILDLKYKNG--VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ S +P++ + G V I + G C A N +G
Sbjct: 449 RCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF 508
Query: 60 R 60
+
Sbjct: 509 K 509
Score = 37.3 bits (86), Expect = 6e-05
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 51
ILD +N ++ + G Y CT + L +
Sbjct: 69 EILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNS 106
Score = 27.3 bits (60), Expect = 0.24
Identities = 2/29 (6%), Positives = 7/29 (24%), Gaps = 4/29 (13%)
Query: 35 EDEGVYVCT----ATNSLGTAETKCKLTV 59
++C G+++
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGE 33
Score = 26.9 bits (59), Expect = 0.30
Identities = 5/35 (14%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 27 LQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ I+ V C+ G + K ++
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQE-GKSVLSEKFILK 203
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 50.0 bits (120), Expect = 3e-10
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 9 PLNSSNILDLKYK----NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L + +Y+ L +V ED G Y + + +L V
Sbjct: 47 ELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG----QCEAELIV 97
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 49.7 bits (119), Expect = 4e-10
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L+SS+ + ++ L +Q+ + G Y C A G + +L V
Sbjct: 50 KLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQV 96
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 49.8 bits (119), Expect = 4e-10
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ S L L+ ++ V L + V ED G Y+C +TV
Sbjct: 52 EVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVT 99
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 49.7 bits (119), Expect = 4e-10
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ S ++K L I D+ Y TA G + +L VR
Sbjct: 47 EIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVR 94
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 51.5 bits (123), Expect = 4e-10
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVA-----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57
D +P N + + V L + D G Y C A N GT T +
Sbjct: 144 KDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
Query: 58 TV 59
+
Sbjct: 204 RM 205
Score = 45.0 bits (106), Expect = 1e-07
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + V ED G Y C + G + + K+ +
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 49.2 bits (118), Expect = 5e-10
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
PL +S ++ L + G A N ++ L V+
Sbjct: 44 PLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN----TKSAANLKVK 91
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 49.9 bits (119), Expect = 5e-10
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 9 PLNSSNILDLKYKNGV-------ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
LN ++ + ++ L++ + + G Y A N G A
Sbjct: 40 VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 48.9 bits (117), Expect = 6e-10
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+++SN L + +L ++EV P D+G Y A G+++ K L V
Sbjct: 47 DISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 51.0 bits (122), Expect = 6e-10
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVR 60
K D S + I + G L I D G YVC TN +G E++ +LTV
Sbjct: 147 KKDGSPLDDKDERIT---IRGG--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201
Score = 39.8 bits (93), Expect = 7e-06
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFP-----EDEGVYVCTATNSLGTAETKC- 55
+ + + + SL + DEGVYVC A N LG A +
Sbjct: 44 YKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDA 103
Query: 56 KLTV 59
L V
Sbjct: 104 SLEV 107
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold,
transmembrane, glycoprotein, signal, complex
(immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 51.3 bits (122), Expect = 7e-10
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D+S P+++ + L ED G Y C NS K
Sbjct: 42 KDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF 96
Score = 43.6 bits (102), Expect = 3e-07
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
PL NI + L + V + G Y C A+ + + +
Sbjct: 149 PLLLDNI---HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
Score = 42.4 bits (99), Expect = 1e-06
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 14 NILDLKYKNGVASLQIQEVFPED-EGVYVCTATNSLGTAETKCKLTVR 60
N + + + L I E+ + + C A N+ G +L
Sbjct: 266 NPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 49.7 bits (118), Expect = 9e-10
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ ++ EDEGVY T N +G + + V
Sbjct: 101 DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 50.8 bits (121), Expect = 1e-09
Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 6/59 (10%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ P K + S+ G Y+ A N L +R
Sbjct: 361 TFSRKSFPCEQ------KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413
Score = 50.4 bits (120), Expect = 1e-09
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
GV S+ I ++ G Y+ + +++R
Sbjct: 98 QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR 138
Score = 40.4 bits (94), Expect = 6e-06
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 2 KHDNSTIPLNS----SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 51
+ +N + + S + + + V D G Y C+++ +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Score = 34.6 bits (79), Expect = 6e-04
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ E+F D C A N LG T+
Sbjct: 195 EKVLHELFGTD---IRCCARNELGRECTRLFTID 225
Score = 25.8 bits (56), Expect = 0.80
Identities = 4/42 (9%), Positives = 11/42 (26%), Gaps = 3/42 (7%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
K + + + + Y + + C L +
Sbjct: 9 VIKCVLINHKNNDSSVGKSSSYPMVSESPEDLG---CALRPQ 47
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 48.5 bits (116), Expect = 1e-09
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ S + + + L I +V PEDEG Y + KL
Sbjct: 47 EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLS--AKLNFL 96
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 48.5 bits (116), Expect = 1e-09
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ S +L +K L + E +D G + C +TV+
Sbjct: 49 KVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ 96
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 49.9 bits (119), Expect = 1e-09
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTVR 60
+L I V P DEG Y C A N +GT E+ KL V+
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Score = 45.6 bits (108), Expect = 6e-08
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGV--ASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLT 58
D + N +++K+G +Q +D G Y C A N +G A + L
Sbjct: 44 FKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQ 103
Query: 59 V 59
+
Sbjct: 104 I 104
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 48.3 bits (115), Expect = 2e-09
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 2 KHDNSTIPLNSSN---ILDLKYKNGVAS-LQIQEVFPEDEG-VYVCTATNSLGTAETKCK 56
+ + +S + + + GV S L I + D +Y CTA NS G+ +
Sbjct: 49 SWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIR 108
Query: 57 LTVR 60
L +
Sbjct: 109 LKEQ 112
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 48.2 bits (115), Expect = 2e-09
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 9 PLNSSNILDLKYKNG-VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
PL+++ + ++ + G L ++++ +D G A G L V
Sbjct: 53 PLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVT 101
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 49.5 bits (117), Expect = 2e-09
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+G +L I+ D G C G + T+
Sbjct: 210 SGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 35.7 bits (81), Expect = 2e-04
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNS-----LGTAETKCKLTV 59
+L++ V P+D G Y C G L V
Sbjct: 86 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 48.7 bits (116), Expect = 4e-09
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 20 YKNGVA-------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+KN + + V E +G Y C N + ++K +
Sbjct: 153 FKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
Score = 48.0 bits (114), Expect = 8e-09
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 20 YKNGV-------ASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 59
+K + L V +D G YVC N+ ++ +L V
Sbjct: 53 FKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 49.2 bits (117), Expect = 4e-09
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 20 YKNGV-----ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+G L I + ++ G+Y C A NS T+
Sbjct: 416 LIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
Score = 46.5 bits (110), Expect = 4e-08
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 20 YKNGV-----ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
NG+ L I ++ P + G Y C +N ++
Sbjct: 594 RINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
Score = 45.7 bits (108), Expect = 6e-08
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
+N ++P++ L+ N +L + V D G Y C N L +
Sbjct: 324 VNNQSLPVSPR----LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD 371
Score = 43.8 bits (103), Expect = 3e-07
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTVR 60
+ ++P++ L L N +L + V D YVC NS+ + L V
Sbjct: 502 VNGQSLPVSPR--LQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Score = 43.4 bits (102), Expect = 4e-07
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 20 YKNGVAS-----LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ NG L I + + G Y C A NS T+
Sbjct: 238 FVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283
Score = 42.2 bits (99), Expect = 1e-06
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
+N ++P++ L+ NG +L + V D Y C N + +
Sbjct: 146 VNNQSLPVSP----RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSD 193
Score = 39.2 bits (91), Expect = 1e-05
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 5 NSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 52
P + + ++ Y N SL IQ + D G Y S E
Sbjct: 53 QQATPGPAYSGREIIYPNA--SLLIQNIIQNDTGFYTLHVIKSDLVNE 98
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 46.6 bits (111), Expect = 5e-09
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ I S + + +L I + D+ Y C G + +L V+
Sbjct: 51 KNGQEIQ-MSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 48.0 bits (114), Expect = 7e-09
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L V D G Y C A N GTA +
Sbjct: 170 DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 43.0 bits (101), Expect = 5e-07
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ V +D G Y C + G + + +
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 46.2 bits (110), Expect = 7e-09
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 20 YKNGV-------ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+KN + + V E +G Y C N + ++K +
Sbjct: 38 FKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 46.9 bits (111), Expect = 1e-08
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLTVR 60
++ + S + + G + L I+ + E D G Y C T+S G+ + L VR
Sbjct: 125 EDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 32.3 bits (73), Expect = 0.004
Identities = 6/40 (15%), Positives = 9/40 (22%), Gaps = 9/40 (22%)
Query: 20 YKNGV---------ASLQIQEVFPEDEGVYVCTATNSLGT 50
K GV + + + G Y C
Sbjct: 35 LKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMG 74
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 46.6 bits (110), Expect = 2e-08
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 14 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ K+G AS+ + + D G Y C + G A K LTV
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119
Score = 45.1 bits (106), Expect = 9e-08
Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ + + + + + ++ + + ++ E G Y CT N +G+ + +L V
Sbjct: 157 QKLSDSQTMPTPWLAEMT--SP--VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 45.6 bits (108), Expect = 2e-08
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 2 KHDNSTIPLNSSNILDLKYK--NGVASLQIQEVF-----PEDEGVYVCTATNSLGTAETK 54
+ + + + +G SL + DEGVYVC A N LG A +
Sbjct: 44 YKGGERVETDKDDPRSHRMLLPSG--SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101
Query: 55 -CKLTV 59
L V
Sbjct: 102 DASLEV 107
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 47.0 bits (111), Expect = 3e-08
Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 6/59 (10%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ P + + S+ G Y+ A N L +R
Sbjct: 361 TFSRKSFPCEQKGLDNGY------SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413
Score = 46.2 bits (109), Expect = 4e-08
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
GV S+ I ++ G Y+ + +++R
Sbjct: 98 QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR 138
Score = 41.6 bits (97), Expect = 2e-06
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
S + + C A NSLGT+ L
Sbjct: 475 SSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSP 509
Score = 40.1 bits (93), Expect = 6e-06
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 2 KHDNSTIPLNSSNILDLKYKN----GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 57
+ +N + + + N + + V D G Y C+++ + +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL---V 319
Query: 58 TV 59
T+
Sbjct: 320 TI 321
Score = 33.1 bits (75), Expect = 0.002
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
V + + + C A N LG T+
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR 220
Score = 23.9 bits (51), Expect = 4.2
Identities = 2/33 (6%), Positives = 8/33 (24%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 51
K + + + + Y + +
Sbjct: 9 VIKCVLINHKNNDSSVGKSSSYPMVSESPEDLG 41
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 46.4 bits (110), Expect = 3e-08
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 2 KHDNSTIPLNSSNILDLKYK-------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
D + L S + V+ L+I + D G Y C T ++
Sbjct: 38 LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQ 97
Query: 55 C-KLTVR 60
+ +
Sbjct: 98 PGYVGLE 104
Score = 36.8 bits (85), Expect = 8e-05
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETK 54
SL + + + C A N+ G ++
Sbjct: 159 SLHVPGL--NKTSSFSCEAHNAKGVTTSR 185
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 46.6 bits (110), Expect = 3e-08
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L I+ V +C TN+LG + + + V
Sbjct: 269 QLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 38.5 bits (89), Expect = 3e-05
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 23 GVASLQIQEVFPEDEGVYVCTA-TNSLGTAETKCKLTV 59
ASL++ + EDEG Y C T G+ L V
Sbjct: 77 RNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 28.9 bits (64), Expect = 0.058
Identities = 8/57 (14%), Positives = 13/57 (22%), Gaps = 1/57 (1%)
Query: 4 DNSTIPLNSSNILDLKYKNGVAS-LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
D +P S L V S + D C + + +
Sbjct: 155 DLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL 211
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 46.3 bits (109), Expect = 3e-08
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ + + K +++L I V D+G+Y C A++ L T + + V
Sbjct: 149 QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206
Score = 32.1 bits (72), Expect = 0.004
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
++ + + I + I G+ C A + + ++ + V
Sbjct: 45 RYPEKRFVPDGNRIS----WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 46.8 bits (111), Expect = 3e-08
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
++ L+ + + +NG L ++V ED GVY C A +L V
Sbjct: 281 SPSNEQVLSQGSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV 335
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 46.6 bits (110), Expect = 3e-08
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L I +D GV++C A N+ G+A L V
Sbjct: 251 QETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 35.1 bits (80), Expect = 4e-04
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 51
D + + +N ++ G Y C+ +N L ++
Sbjct: 35 IDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS 83
Score = 28.9 bits (64), Expect = 0.065
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEV-FPEDEGVYVCTATNSLGTAETK 54
++ D ++P + + + + K A + I+ V C A +
Sbjct: 126 IECDGKSLPTDLTFVPNPK-----AGITIKNVKRAYHRLCVRCAAQRDGTWLHSD 175
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 46.2 bits (109), Expect = 4e-08
Identities = 11/60 (18%), Positives = 17/60 (28%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
M HD I D+ L + +G Y+C + L+V
Sbjct: 43 MHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV 102
Score = 35.8 bits (82), Expect = 2e-04
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQ---EVFPEDEGVYVCTATNSLGTAE 52
+ + ++N +K K+G SL + + C N A
Sbjct: 139 LMPEGVEPAPTAANGGVMKEKDG--SLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 46.4 bits (109), Expect = 4e-08
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 20 YKNGVASLQIQEVFP---EDEGVYVCTATNSLGTAETKCKLTV 59
K+G L I E + EG Y+C A ++ G + + V
Sbjct: 405 LKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447
Score = 31.8 bits (71), Expect = 0.006
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
A L ++ ++ + C+AT + T
Sbjct: 327 AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362
Score = 30.6 bits (68), Expect = 0.017
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
PL +L G + +++ +C + G + K LTV
Sbjct: 36 PLPKKELLL----PGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVY 83
Score = 29.5 bits (65), Expect = 0.048
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 21 KNGVASLQIQEVFPEDEGVY--VCTATNSLGTAETKCKLTV 59
+ ++ V EDEG C + ET +T+
Sbjct: 240 NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
Score = 26.4 bits (57), Expect = 0.49
Identities = 2/39 (5%), Positives = 7/39 (17%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + + + C L +
Sbjct: 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 45.8 bits (108), Expect = 5e-08
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 20 YKNGVASLQIQEVFP---EDEGVYVCTATNSLGTAETKCKLTVR 60
K+G L I E + EG Y+C A ++ G + + V
Sbjct: 220 LKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 31.2 bits (70), Expect = 0.010
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 9 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
LN + + AS+ + E C + ET +T+
Sbjct: 46 RLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTI 95
Score = 25.8 bits (56), Expect = 0.94
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLG 49
A L ++ ++ + C+AT +
Sbjct: 139 GPRAQLLLKATPEDNGRSFSCSATLEVA 166
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 44.3 bits (104), Expect = 7e-08
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ + + K +++L I V D+G+Y C A++ L T + + V
Sbjct: 50 KHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 45.5 bits (107), Expect = 7e-08
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L++ + + G Y A N G A
Sbjct: 310 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
Score = 35.1 bits (80), Expect = 4e-04
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 26 SLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLTVR 60
L + V + + C A N +G AE ++ V
Sbjct: 213 GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 248
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 44.2 bits (104), Expect = 2e-07
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L + ++ +D G + CT + E K + V
Sbjct: 144 TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
Score = 37.6 bits (87), Expect = 4e-05
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
+ G L I+ + ED Y+C + +
Sbjct: 63 WDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLL 97
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 44.3 bits (105), Expect = 2e-07
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ SN + +G +L+++ +D G Y+C A N+ G L VR
Sbjct: 420 LSPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 44.1 bits (104), Expect = 2e-07
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 20 YKNGVA--------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
Y+NG A +L I + G Y C+ +TV+
Sbjct: 118 YRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Score = 41.1 bits (96), Expect = 3e-06
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 18 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVR 60
L+ +N + QI ED G+Y C A G + +L ++
Sbjct: 216 LRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQ 259
Score = 34.1 bits (78), Expect = 8e-04
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 20 YKNGVA------SLQIQEVFPEDEGVYVCTATNSLGTAETKC 55
+ NG A S +I D G Y C S + +
Sbjct: 37 FLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQL 78
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 44.1 bits (103), Expect = 2e-07
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L + D G Y C N+ ++ L V
Sbjct: 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVV 114
Score = 41.8 bits (97), Expect = 2e-06
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 21 KNGVASLQIQEVFPEDEGV-YVCTATNSLGTAETKCKLTVR 60
+ L I++V ED YVC A ++ G K+ +
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332
Score = 34.5 bits (78), Expect = 6e-04
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLG 49
+L + G Y C T
Sbjct: 178 NLSFLIALISNNGNYTCVVTYPEN 201
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 43.3 bits (101), Expect = 5e-07
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
S+++Q V D+G+Y C+ + L V
Sbjct: 199 NDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235
Score = 43.3 bits (101), Expect = 5e-07
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 16 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L + SL +Q+V DEG+Y C + K + +
Sbjct: 75 LVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 43.3 bits (101), Expect = 5e-07
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+N + ++ + KY +L I ED G Y C + ++
Sbjct: 164 YKNNQELIIDGT-----KYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSR 216
Score = 41.4 bits (96), Expect = 2e-06
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGV--ASLQIQEVFPEDEG-VYVCTATNSLGTAETKCKL 57
I L+ L G+ A+L + V E G Y C N +
Sbjct: 267 ENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Query: 58 TV 59
+
Sbjct: 327 VL 328
Score = 31.7 bits (71), Expect = 0.006
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEG-VYVCTATNSLGTAET 53
K + PLN + KNG L I D Y+CT T G
Sbjct: 73 EKIGKTRRPLNR------RVKNG--DLWIANYTSNDSHRRYLCTVTTKNGDCVQ 118
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 43.1 bits (101), Expect = 5e-07
Identities = 9/40 (22%), Positives = 11/40 (27%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
G A I V D G Y C + V+
Sbjct: 63 PLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVK 102
Score = 28.9 bits (64), Expect = 0.072
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 5 NSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 53
N ++P N+S+I + V S+ + P+ + C N+ T
Sbjct: 139 NVSVPANTSHIRTPEGLYQVTSVLR--LKPQPSRNFSCMFWNAHMKELT 185
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 42.8 bits (100), Expect = 8e-07
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L I ED G Y C T S+ + + + +
Sbjct: 243 ILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
Score = 38.1 bits (88), Expect = 3e-05
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
+ + P + D + + L + + D G Y CT +S G +
Sbjct: 31 ERMSQEPPQEMAKAQDGTF---SSVLTLTNLTGLDTGEYFCTHNDSRGLETDE 80
Score = 31.6 bits (71), Expect = 0.007
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
Q ++ Y+C T ++ R
Sbjct: 138 PVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYR 176
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 42.8 bits (100), Expect = 8e-07
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ G Y+C ATN +GT + ++ +
Sbjct: 285 LFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
Score = 38.6 bits (89), Expect = 2e-05
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 18 LKYKNGVASLQIQEVFPEDEGVYVCTA-TNSLGTAETKCKLTV 59
L+ ++++ + EDEGVY+C T G E++ LTV
Sbjct: 85 LRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV 127
Score = 33.2 bits (75), Expect = 0.002
Identities = 3/35 (8%), Positives = 9/35 (25%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
++ + C + + L V+
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ 229
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 42.4 bits (100), Expect = 1e-06
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+G +L V D GVY C TN G + L V
Sbjct: 404 LNDG--TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 42.5 bits (99), Expect = 1e-06
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L + ++ +D G + CT + E K + V
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176
Score = 37.1 bits (85), Expect = 7e-05
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
+ G L I+ + ED Y+C + +
Sbjct: 62 WDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLL 96
Score = 35.9 bits (82), Expect = 2e-04
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFP--EDEGVYVCTATNSLGTAETKCKLT 58
+K+ ++ + + K L + + P G G + L
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLV 290
Query: 59 V 59
V
Sbjct: 291 V 291
Score = 28.2 bits (62), Expect = 0.100
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ V + G++ C ++S G + + V
Sbjct: 329 REKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 41.7 bits (97), Expect = 2e-06
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + IQE + GVY + +
Sbjct: 142 DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179
Score = 38.3 bits (88), Expect = 3e-05
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 20 YKNGV------ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K+ A+L + + E+ G Y T ++ + ++ +
Sbjct: 41 TKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFL 86
Score = 28.6 bits (63), Expect = 0.080
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 10/44 (22%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSL----------GTAETKCKLTV 59
L + +D + C A + KC + V
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEV 302
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 41.3 bits (97), Expect = 2e-06
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+G +L V +D G+Y C +NS+G L V
Sbjct: 394 LSDG--TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 39.3 bits (91), Expect = 4e-06
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 59
D + L+++ V EG Y C +N G++ + LT+
Sbjct: 54 QDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 40.0 bits (93), Expect = 6e-06
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
K+G ASL++ + E+ G Y C + A+ +L V
Sbjct: 78 KSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV 117
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 39.5 bits (92), Expect = 6e-06
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
G +L+IQ V DEG Y C + E +L V
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 39.1 bits (91), Expect = 6e-06
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
K+G AS+ + + D G Y C + G A K L V
Sbjct: 85 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 39.0 bits (91), Expect = 7e-06
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 25 ASLQIQEVFPEDEGVYVC-TATNSLGTAETKCKLTV 59
ASL++ + EDEG Y C T G+ L V
Sbjct: 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 39.5 bits (92), Expect = 1e-05
Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 5 NSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ L +KNG +L+I+ + +D+ +Y + ++ G + ++
Sbjct: 49 KEKETFKEKDTYKL-FKNG--TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK 101
Score = 31.4 bits (71), Expect = 0.008
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 20 YKNGVA-----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
Y++G + + + CTA N + + ++
Sbjct: 135 YQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 39.4 bits (91), Expect = 1e-05
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ ++L + V +E Y+CTAT E ++ +
Sbjct: 50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY 89
Score = 25.1 bits (54), Expect = 1.2
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAE 52
+ V + V VC A + +
Sbjct: 151 TKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 38.4 bits (89), Expect = 1e-05
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 1 MKHDNSTIPLNSSNILD------LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
+ TI LN +L L + S+ + V +DEGVY C S + +
Sbjct: 36 LTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKE 94
Query: 55 CKLTV 59
K+ V
Sbjct: 95 VKVIV 99
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 39.0 bits (90), Expect = 2e-05
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTA-TNSLGTAETKCKLTV 59
+ L + E DE YVC + GTAE +L V
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 38.6 bits (90), Expect = 2e-05
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 20 YKNGVA--------SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVR 60
++NG + + I + G Y CT +K +TV+
Sbjct: 121 FQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 32.5 bits (74), Expect = 0.003
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 8/46 (17%)
Query: 20 YKNGVA------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ NG + D G Y C + + LTV
Sbjct: 40 FHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPV--HLTV 83
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 38.8 bits (90), Expect = 2e-05
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
NG L+I+ + +D G Y T ++ GT L +R
Sbjct: 58 LANG--DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLR 96
Score = 23.8 bits (51), Expect = 3.7
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 5/45 (11%)
Query: 20 YKNGVA-----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
Y+ + + + C A N + +
Sbjct: 130 YQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 38.8 bits (89), Expect = 2e-05
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 6 STIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTVR 60
S S ++ + + SL + V DEG Y C ET + V
Sbjct: 490 SQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545
Score = 38.1 bits (87), Expect = 3e-05
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 11 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
+ + S+ I ++ D G Y+C A + + +
Sbjct: 171 GRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN 214
Score = 35.7 bits (81), Expect = 2e-04
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58
K+G S+ I + ED G Y+C A + E
Sbjct: 286 KDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323
Score = 32.7 bits (73), Expect = 0.003
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
+NG + I ++ +D G Y C +
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFD 104
Score = 31.1 bits (69), Expect = 0.012
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLG 49
NG ++ + ++ D G Y C
Sbjct: 402 GNGTFTVILNQLTSRDAGFYWCLTNGDTL 430
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 37.6 bits (87), Expect = 2e-05
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 25 ASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTV 59
L +Q + D G Y C T GT + L V
Sbjct: 71 LGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 38.1 bits (88), Expect = 3e-05
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTV 59
L+I + ED G Y C +N + + KL +
Sbjct: 164 ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 36.6 bits (84), Expect = 1e-04
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
Y NG SL Q + +D GVY T+
Sbjct: 68 YSNG--SLLFQMITMKDMGVYTLDMTDENYRRTQA 100
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 36.9 bits (85), Expect = 6e-05
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 25 ASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTV 59
A+L + + EDEG Y C AT G+ L V
Sbjct: 93 ATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 37.2 bits (86), Expect = 6e-05
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 20 YKNGVA--------SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVR 60
YK+G A ++ I ED G Y CT E++ +TV
Sbjct: 121 YKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 33.7 bits (77), Expect = 0.001
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 20 YKNGV------ASLQIQEVFPEDEGVYVCTATNSLGTAETK 54
+ NG +SL I ED G Y C +
Sbjct: 40 FHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVY 80
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 36.6 bits (84), Expect = 1e-04
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 12 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTV 59
L + ASL++ + EDEG Y C T G+ L V
Sbjct: 65 EFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV 113
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 36.5 bits (83), Expect = 1e-04
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
G + + V P EG Y+ T + +L V
Sbjct: 250 WTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVY 289
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 36.4 bits (83), Expect = 1e-04
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEV-FPEDEGVYVCTATNSLGTAET 53
+H++ I + + + L ++E E G YVC S
Sbjct: 146 QHNDKNIGGDEDDKN---IGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 195
Score = 31.4 bits (70), Expect = 0.007
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTA 51
+ + G+Y C + +
Sbjct: 49 KKWNLGSNAKDPRGMYQCKGSQNKSKP 75
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 36.0 bits (82), Expect = 2e-04
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 12 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+++ ++ G + L ++ G VC + T + +L V
Sbjct: 46 DTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 35.9 bits (82), Expect = 2e-04
Identities = 9/59 (15%), Positives = 13/59 (22%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
I + +AS + D G Y C G + V
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV 257
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 35.8 bits (82), Expect = 2e-04
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58
G A+L+I V D G Y+C + + +L
Sbjct: 79 TAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELK 116
Score = 24.7 bits (53), Expect = 2.3
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 34 PEDEGVYVCTATNSLGTAETKCKLTV 59
CT +SL E +++
Sbjct: 186 GSSGEGVSCTIRSSLLGLEKTASISI 211
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 35.3 bits (81), Expect = 2e-04
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 13 SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 59
+ L ++G +L I +V ED Y+ G + KL V
Sbjct: 63 KGRVRLDPQSG--ALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 34.9 bits (80), Expect = 4e-04
Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 11/59 (18%)
Query: 3 HDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE-TKCKLTVR 60
+ N + I + +D G Y C ++T+
Sbjct: 125 QNGKGRKYFHHN----------SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT 173
Score = 31.0 bits (70), Expect = 0.011
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 20 YKNGV------ASLQIQEVFPEDEGVYVCTATNS 47
+ N +S I +D G Y C S
Sbjct: 43 FHNESLISSQASSYFIDAATVDDSGEYRCQTQLS 76
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 34.5 bits (79), Expect = 5e-04
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 9/49 (18%)
Query: 20 YKNGVA--------SLQIQEVFPEDEGVYVCTATNSLGTAE-TKCKLTV 59
+NG I + +D G Y C +T+
Sbjct: 124 LQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 31.4 bits (71), Expect = 0.009
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 6/37 (16%)
Query: 20 YKNGV------ASLQIQEVFPEDEGVYVCTATNSLGT 50
+ N +S I D G Y C S +
Sbjct: 43 FHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLS 79
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 34.2 bits (78), Expect = 7e-04
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
G A+LQI +V +D GVY C + G + + V
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVN 114
Score = 30.4 bits (68), Expect = 0.019
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 34 PEDEGVYVCTATNSLGTAETKCKLTV 59
++ CT +L +
Sbjct: 184 TTTNEIFYCTFRRLDPEENHTAELVI 209
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 34.0 bits (77), Expect = 7e-04
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
S+ I V DEG Y C+ ++ K +TV
Sbjct: 104 SISISNVALADEGEYTCSI-FTMPVRTAKSLVTV 136
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 33.7 bits (77), Expect = 7e-04
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
S+ + +V DEG Y C+ ++ +K LTV
Sbjct: 72 SISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 33.8 bits (77), Expect = 8e-04
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 12/47 (25%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNS-------LGTAETKCKLTVR 60
+ A L I++V D +YVC GT +L V
Sbjct: 77 HDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGNGT-----RLVVE 118
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 33.0 bits (75), Expect = 0.001
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ + ++ K L + V +D G V + + + LT++
Sbjct: 51 EPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV---QDSAALTIQ 104
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 32.6 bits (74), Expect = 0.002
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
S+ I + D G + C N ++T+
Sbjct: 81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.5 bits (73), Expect = 0.002
Identities = 7/35 (20%), Positives = 9/35 (25%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
L I +V D G Y + V
Sbjct: 81 ELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 32.7 bits (73), Expect = 0.003
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT-NSLGTAETKCKLTVR 60
+H + +++ L I+ + + G Y C A S +L
Sbjct: 534 RHKENVEQSCEP-----GHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLPE 588
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.5 bits (71), Expect = 0.006
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 18 LKYKNGVASLQIQEVFPEDEGVYVC-----TATNSLGTAETKCKLTVR 60
G SLQI + +D Y C T + + +L VR
Sbjct: 71 SHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVR 118
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 31.5 bits (71), Expect = 0.007
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
S+ I + P DEG Y C
Sbjct: 61 ITNNLSIVILALRPSDEGTYECVVLKYEKD 90
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 31.4 bits (70), Expect = 0.007
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 52
+L++ V P+D G Y C E
Sbjct: 88 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 119
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 31.3 bits (69), Expect = 0.009
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 1 MKHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
K N + S + KN L I + D GVY C + +T ++ +
Sbjct: 566 WKFQNGVLKAESPKYGLMGRKN----LLIFNLSEGDSGVYQCLSEER-VKNKTVFQVVAK 620
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 31.0 bits (70), Expect = 0.009
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 13 SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ +DL NG +L+I V ED G Y + + K + V
Sbjct: 59 KDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEV 102
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 30.6 bits (69), Expect = 0.011
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 21 KNGVASLQIQEVFPEDEGVYVC 42
+ V +L ++++ PED G Y
Sbjct: 75 DHKVCNLLLKDLKPEDSGTYNF 96
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 30.4 bits (69), Expect = 0.011
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 10/46 (21%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC----------KLTVR 60
SL+I ++ ED G Y C A S LTV+
Sbjct: 66 FSLRISDLRVEDSGTYKCQADYSPSCYSYPSLESAVEGAGTVLTVK 111
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 30.7 bits (69), Expect = 0.013
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 58
SLQ+ + ED G Y + + L
Sbjct: 70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR 103
Score = 23.0 bits (49), Expect = 7.8
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 35 EDEGVYVCTATNSLGTAETKCKLTV 59
E Y C A N++
Sbjct: 166 SSEQDYTCIAENAVSNLSFSVSAQK 190
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 30.2 bits (67), Expect = 0.015
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 12 SSNILDLKYKNGVASLQIQEVFPEDE-GVYVCTATNSLGTAETKCKLTVR 60
S+ I + G ASL++ + G Y C T ET +L R
Sbjct: 65 SAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELTREGETIIELKYR 114
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 30.0 bits (68), Expect = 0.016
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC-------KLTVR 60
ASL I+++ ED G Y C A LTV+
Sbjct: 66 ASLTIRDLRVEDSGTYKCKAYRRCAFNTGVGYKEGAGTVLTVK 108
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 29.9 bits (67), Expect = 0.018
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 3 HDNSTIPLNSSNILDLK--YKNGVASLQIQEVFPEDEGVYVC 42
+ + S+ +LK G SL I+ D G+Y C
Sbjct: 49 TNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCC 90
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 29.9 bits (67), Expect = 0.019
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
G SL I+ D G Y C L V+
Sbjct: 70 SEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 30.0 bits (68), Expect = 0.021
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 11/42 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVR 60
+L+I V ED GVY C + + GT KL ++
Sbjct: 196 FTLKISRVEAEDLGVYYCFQGSHVPYTFGGGT-----KLEIK 232
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 30.0 bits (68), Expect = 0.022
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
+L I V ED G+Y C +NS GT KL +
Sbjct: 207 FTLSINSVETEDFGIYFCQQSNSWPHTFGTGT-----KLEL 242
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 29.8 bits (66), Expect = 0.022
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 5 NSTIPLNSSNILDLKYKN-GVASLQIQEVFPEDEGVYVCTATNSLGTAET 53
+ + L + KN L + V P D G Y C+A E+
Sbjct: 52 TTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIES 101
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 29.8 bits (67), Expect = 0.024
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
SL I + P D Y C A+++ +L V+
Sbjct: 73 SLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVK 107
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N
2i26_N
Length = 121
Score = 29.6 bits (67), Expect = 0.026
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKC 55
SL+I ++ +D G Y C + G+ + C
Sbjct: 67 SLRINDLTVKDSGTYRCKPESRYGSYDAVC 96
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 29.6 bits (67), Expect = 0.029
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAET 53
ASL I + PEDE Y C+ +S +A
Sbjct: 211 ASLTITGLQPEDEADYYCSTWDSSLSAVV 239
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 29.7 bits (66), Expect = 0.030
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
VA I + P D GV+VC+ G E ++V+
Sbjct: 384 VAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVK 420
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 29.6 bits (67), Expect = 0.031
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 11/42 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVR 60
+L I V +D Y C +N + GT KL ++
Sbjct: 207 FTLTINPVEADDVATYFCQRSNEVPWTFGGGT-----KLEIK 243
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 29.3 bits (66), Expect = 0.034
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 21 KNG-VASLQIQEVFPEDEGVYVCTATNSLGTAETK-C--KLTV 59
+N +A+L IQ + ED G+Y C + + + C +L V
Sbjct: 75 QNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRV 117
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 29.6 bits (67), Expect = 0.036
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
+L I + PED VY C ++ GT K+ V
Sbjct: 205 FTLTISRLEPEDFAVYYCQQRSNWPPTFGQGT-----KVEV 240
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 29.6 bits (66), Expect = 0.036
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNS 47
L + + E+EG Y C+ ++
Sbjct: 90 YVLTLNKFSKENEGYYFCSVISN 112
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 29.0 bits (65), Expect = 0.039
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 25 ASLQIQEVFPEDEGVYVC-----TATNSLGTAETKCKLTVR 60
+L++ + +D+G+Y C T + + +L+V
Sbjct: 69 WTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.1 bits (64), Expect = 0.039
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAET 53
V L + + D G Y C+ + +
Sbjct: 77 PVFVLHFKPIHLSDNGSYSCSTNFNSQVINS 107
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 29.2 bits (66), Expect = 0.044
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
+L I V ED VY C + GT KL +
Sbjct: 235 FTLTISSVQAEDLAVYYCKQSYYHMYTFGSGT-----KLEI 270
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 28.8 bits (64), Expect = 0.046
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 20 YKNGVASLQIQEVFPEDEGVYVCTATNS-LGTAETKCKLTV 59
Y N SL IQ + D G Y S L E + V
Sbjct: 69 YPNA--SLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo
sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E
3mfg_B 2ij0_E
Length = 246
Score = 29.0 bits (65), Expect = 0.050
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNS 47
++L + PED Y+C+A S
Sbjct: 77 STLTVTSAHPEDSSFYICSARTS 99
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 28.7 bits (64), Expect = 0.057
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 23 GVASLQIQEVFPEDEGVYVC 42
G SL I+ V +D G Y C
Sbjct: 70 GDVSLIIKNVTLDDHGTYCC 89
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 28.9 bits (65), Expect = 0.066
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
+L+I V ED GVY C+ + + GT KL +
Sbjct: 90 FTLKINRVEAEDLGVYFCSQSTHVPWTFGGGT-----KLEI 125
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 28.7 bits (64), Expect = 0.067
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 26 SLQIQEVFPEDEGVYVCTATNS 47
L + + E+EG Y C+ ++
Sbjct: 86 VLTLNKFSKENEGYYFCSVISN 107
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 28.6 bits (64), Expect = 0.068
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC-----KLTV 59
+L I + ED Y C SL A+ ++TV
Sbjct: 209 VALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVTV 248
Score = 28.6 bits (64), Expect = 0.077
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 25 ASLQIQEVFPEDEGVYVC 42
+ ++ + D GVY C
Sbjct: 79 LRMILRNLIENDSGVYYC 96
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 28.5 bits (64), Expect = 0.069
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGT----AETKCKLTV 59
L ++ P +Y C ++++ G + KLTV
Sbjct: 210 FFLTLESASPSQTSLYFCASSDAPGQLYFGEGS--KLTV 246
Score = 25.1 bits (55), Expect = 1.3
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 25 ASLQIQEVFPEDEGVYVC 42
L+ V D VY C
Sbjct: 76 FHLRKASVHRSDSAVYFC 93
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 28.4 bits (63), Expect = 0.071
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 21 KNGVASLQIQEVFPEDEGVYVC 42
+ G SL I D GVY C
Sbjct: 69 QFGEVSLTISNTNRGDSGVYCC 90
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 28.4 bits (63), Expect = 0.078
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 52
++ + N + L +G SL I + DE Y + N T +
Sbjct: 39 ENSEFRAFSSFKNRVYLDTVSG--SLTIYNLTSSDEDEYEMESPNITDTMK 87
Score = 23.7 bits (51), Expect = 4.7
Identities = 3/34 (8%), Positives = 8/34 (23%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + + C A N + +
Sbjct: 136 QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 28.4 bits (63), Expect = 0.085
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATN 46
+ +L I++ D G Y
Sbjct: 84 QTKNCTLSIRDARMSDAGRYFFRMEK 109
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 28.3 bits (62), Expect = 0.091
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNS 47
+ SL I + ED G Y
Sbjct: 78 QKKNCSLSIGDARMEDTGSYFFRVERG 104
Score = 24.8 bits (53), Expect = 2.0
Identities = 2/25 (8%), Positives = 6/25 (24%)
Query: 35 EDEGVYVCTATNSLGTAETKCKLTV 59
+ C T+ + +
Sbjct: 187 DHGTNLTCQMKRQGAQVTTERTVQL 211
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 28.3 bits (63), Expect = 0.10
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 25 ASLQIQEVFPEDEGVYVC 42
++L + PED Y+C
Sbjct: 100 STLTVTSAHPEDSSFYIC 117
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC,
immune system; HET: NAG; 2.40A {Mus musculus} SCOP:
b.1.1.1 PDB: 3b9k_B*
Length = 115
Score = 27.9 bits (63), Expect = 0.10
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 9/37 (24%)
Query: 11 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 47
+ S L I V PED Y C S
Sbjct: 74 SDSRRP---------FLSIMNVKPEDSDFYFCATVGS 101
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 28.3 bits (63), Expect = 0.11
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGT 50
L++Q CT++ T
Sbjct: 74 TELRLQVANMSQGRTLYCTSSADHWT 99
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 27.7 bits (62), Expect = 0.11
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAE----TKCKLTV 59
+ I + D G+Y+C A + + +L V
Sbjct: 74 HMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVV 111
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 28.1 bits (63), Expect = 0.11
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 11/42 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVR 60
SL I + ED Y C +S GT KL ++
Sbjct: 231 YSLTISRMEAEDAATYYCQQRSSYPLTFGAGT-----KLELK 267
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 27.7 bits (62), Expect = 0.12
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCK 56
SL+I ++ ED G Y C + G +
Sbjct: 67 SLRINDLTVEDGGTYRCGLGVAGGYCDYALC 97
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 27.8 bits (62), Expect = 0.13
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL--------GTAETKCKLTV 59
SL I + P D Y C A ++ GT L V
Sbjct: 199 LSLHIADSQPGDSATYFCAAIDTNAYKVIFGKGT-----HLHV 236
Score = 25.9 bits (57), Expect = 0.83
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 25 ASLQIQEVFPEDEGVYVCTA 44
SL ++ P VY C +
Sbjct: 73 FSLILELATPSQTSVYFCAS 92
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 27.8 bits (62), Expect = 0.13
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNS 47
SL+I ++ ED G Y C A
Sbjct: 66 FSLRISDLRVEDSGTYKCQAFYV 88
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.5 bits (61), Expect = 0.13
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+NG + I ++ +D G Y C + L V
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 27.7 bits (62), Expect = 0.14
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC----KLTV 59
+L IQ + ED G+Y C +L V
Sbjct: 77 YTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLV 115
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 27.8 bits (62), Expect = 0.15
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+L I + PED Y C N+ T KL +
Sbjct: 209 YTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLEL 243
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 27.9 bits (61), Expect = 0.16
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 17 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 48
++ L ++ V D G Y C
Sbjct: 52 PSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 27.6 bits (61), Expect = 0.16
Identities = 7/50 (14%), Positives = 14/50 (28%)
Query: 10 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
L + + + I ++ G Y C +E L +
Sbjct: 45 LFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL 94
Score = 24.5 bits (53), Expect = 2.4
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNS 47
A + V G Y C + +
Sbjct: 152 AEFPLGPVTTAHRGTYRCFGSYN 174
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I
domain, integrin, allosteric mobility, cell adhesi
immune system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 27.7 bits (61), Expect = 0.17
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 35 EDEGVYVCTATNSLGTAETKCKLTV 59
E E VC + T + + +
Sbjct: 61 EPETQPVCFFRCARRTLQARGLIRT 85
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 27.5 bits (61), Expect = 0.18
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAE---TKCKLTV 59
ASL I + EDE Y C + NS + T K+TV
Sbjct: 70 ASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTV 107
Score = 23.3 bits (50), Expect = 6.0
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNS 47
V+ L + D Y C +N
Sbjct: 383 VSVLTVLHQNWLDGKEYKCKVSNK 406
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 27.7 bits (62), Expect = 0.18
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLG 49
+L I V PED +Y C +
Sbjct: 220 FTLTITRVEPEDFALYYCQVYGASS 244
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 150
Score = 27.3 bits (61), Expect = 0.18
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 9/37 (24%)
Query: 11 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 47
+ S L I V PED Y C S
Sbjct: 77 SDSRRP---------FLSIMNVKPEDSDFYFCATVGS 104
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T
cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 27.6 bits (61), Expect = 0.19
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGT 50
++L I++ ED G Y C A +
Sbjct: 71 STLHIRDAQLEDSGTYFCAADTWHIS 96
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 27.0 bits (59), Expect = 0.20
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 55
++ N S + G +L I+ +D G Y+ TN+ G K
Sbjct: 54 NDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKVCNKN 105
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 27.2 bits (61), Expect = 0.22
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
SL I + ED Y C +S GT KL +
Sbjct: 212 YSLTISSMEAEDAASYFCHQWSSFPFTFGSGT-----KLEI 247
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1;
signal regulatory protein alpha, immunoglobulin
superfamily, phosphoprotein; HET: NAG; 2.49A {Homo
sapiens}
Length = 327
Score = 27.2 bits (60), Expect = 0.22
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 22 NGVASLQIQEVFPEDEGVYVC 42
N S+ I + P D G Y C
Sbjct: 71 NMDFSISISNITPADAGTYYC 91
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens}
PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A
3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L
3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Length = 216
Score = 27.2 bits (61), Expect = 0.23
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 12/42 (28%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL-------GTAETKCKLTV 59
A+L I + DE Y C +S GT KL +
Sbjct: 72 ATLGITGLQTGDEADYYCGTWDSSLNPVFGGGT-----KLEI 108
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized
SCFV), SCFV, monovalent antibo antibody engineering,
immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Length = 276
Score = 27.3 bits (61), Expect = 0.23
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
+L I + PED Y C + GT K+ +
Sbjct: 82 FTLTISSLQPEDFATYYCQQHYTTPPTFGCGT-----KVEI 117
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 27.1 bits (59), Expect = 0.25
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 21 KNGVASLQIQEVFPEDEGVY--VCTATNSLGTAETKCKLTV 59
+ ++ V EDEG C + ET +T+
Sbjct: 240 NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
Score = 27.1 bits (59), Expect = 0.30
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
N ++ V +++ +C + G + K LTV
Sbjct: 47 NNRKVYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTVY 83
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 27.3 bits (61), Expect = 0.26
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC-----KLTV 59
L I + PEDE +Y+C +++ K+TV
Sbjct: 75 RYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTV 114
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 26.9 bits (59), Expect = 0.29
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVC 42
++ + + + + + ED +Y C
Sbjct: 69 QFDDYHSEMNMSALELEDSAMYFC 92
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 26.9 bits (59), Expect = 0.31
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 55
+ +L+IQ ED VY C ++ AE
Sbjct: 70 RPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFF 106
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 26.5 bits (59), Expect = 0.32
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAE------TKCKLTV 59
+L I++ ED G Y C A S G+ + T +LTV
Sbjct: 72 TLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGT--QLTV 109
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder,
SCFV, picomolar binder, immune system; 2.35A {Mus
musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Length = 135
Score = 26.8 bits (60), Expect = 0.32
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
A+L I EDE +Y C S GT KLTV
Sbjct: 78 AALTITGAQTEDEAIYFCALWYSNHWVFGGGT-----KLTV 113
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 26.9 bits (60), Expect = 0.34
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
+L+I V ED G+Y C + GT KL +
Sbjct: 76 FTLKISRVEAEDLGIYYCFQGSHFPPTFGGGT-----KLEI 111
Score = 23.8 bits (52), Expect = 4.1
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 25 ASLQIQEVFPEDEGVYVCT 43
A LQI + ED Y C
Sbjct: 206 AFLQINNLKNEDTATYFCV 224
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 26.9 bits (60), Expect = 0.34
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
A+L I EDE +Y C ++ GT KLTV
Sbjct: 73 AALTITGAQTEDEAIYFCALWSNNKLVFGGGT-----KLTV 108
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 26.4 bits (58), Expect = 0.34
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 16 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
+ L+ NG +L I V ED+G Y E K L V
Sbjct: 66 VYLEENNG--ALHISNVRKEDKGTYYMRVLRE-TENELKITLEVF 107
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 26.7 bits (59), Expect = 0.35
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGT 50
L +++ D G Y+C + S+G
Sbjct: 75 ILSSKKLLLSDSGFYLCAWSVSVGA 99
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 26.4 bits (58), Expect = 0.36
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
KN ++ ++++ D Y C + ++T+
Sbjct: 71 KNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTI 109
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 26.4 bits (58), Expect = 0.37
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 18 LKYKNGVASLQIQEVFPEDEGVYVC--TATNSLGTAETKCKLTV 59
+ +L I ++ ED G Y T + L +
Sbjct: 65 IHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 26.2 bits (58), Expect = 0.38
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
++ + ++ ++++ D G+Y C T K + +
Sbjct: 70 RDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNI 108
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold,
fluorogen activation, dimethylindole RE binding protein;
HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A*
3lrg_A 3lrh_A 2rhe_A
Length = 123
Score = 26.3 bits (59), Expect = 0.39
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 13/43 (30%)
Query: 25 ASLQIQEVFPEDEGVYVCTA-TNSL-------GTAETKCKLTV 59
ASL I + EDE Y C + +SL GT K+TV
Sbjct: 72 ASLAISGLRSEDEADYYCLSWDDSLNGWVFGGGT-----KVTV 109
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase,
transferase, sulfate metabolism, nucleotide 2 kinase;
2.95A {Thiobacillus denitrificans}
Length = 552
Score = 26.4 bits (58), Expect = 0.45
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 18 LKYKNG--VASLQIQEVFPEDEGVYV 41
L+ G +A L + +V+ + E ++
Sbjct: 104 LRDGEGYMLAILTLSDVWKDGERWHL 129
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 26.5 bits (58), Expect = 0.45
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 23 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
G+ + ++++ EDEG Y + G A L +
Sbjct: 94 GIIEMFMEKLQDEDEGTYTFQIQD--GKATGHSTLVL 128
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 26.4 bits (57), Expect = 0.48
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 10/58 (17%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
+ + +P L L+ EV ED G YVC S K V
Sbjct: 32 EKNGQELPQKHDKHLVLQ--------DFSEV--EDSGYYVCYTPASNKNTYLYLKARV 79
Score = 26.0 bits (56), Expect = 0.65
Identities = 3/32 (9%), Positives = 6/32 (18%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 50
+ + + G Y C
Sbjct: 147 PLNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 26.5 bits (58), Expect = 0.50
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCT 43
+ SL ++ P VY C
Sbjct: 66 RPSQEQFSLILELATPSQTSVYFCA 90
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity,
multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1
PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L*
1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Length = 120
Score = 25.9 bits (58), Expect = 0.50
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
A+L I EDE +Y C S GT KLTV
Sbjct: 73 AALTITGAQTEDEAIYFCALWYSNHLVFGGGT-----KLTV 108
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble
protein, KD, protein engineering, immunotherapy,
immune-suppressor, immune system; 2.10A {Homo sapiens}
PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Length = 114
Score = 26.1 bits (58), Expect = 0.52
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 25 ASLQIQEVFPEDEGVYVC-TATNSLG 49
L + + E+EG Y C +NS+
Sbjct: 77 FVLTLSDFRRENEGYYFCSALSNSIM 102
>3ux9_B SCFV antibody; five helices, long loop connecting helix,
hydrophobic intera cytokine-immune system complex; 2.80A
{Homo sapiens}
Length = 256
Score = 26.1 bits (58), Expect = 0.52
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAET 53
ASL I + EDE Y C ++
Sbjct: 74 ASLAITGLQSEDEADYYCQVRDNNENEWV 102
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 26.1 bits (58), Expect = 0.52
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 25 ASLQIQEVFPEDEGVYVCT 43
A L+I DEG Y C
Sbjct: 75 AVLKILAPSERDEGSYYCA 93
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex,
immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Length = 115
Score = 26.0 bits (58), Expect = 0.54
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAETKC-----KLTV 59
L I + PEDE +Y+C +++ K+TV
Sbjct: 76 RYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTV 115
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV,
immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 26.2 bits (58), Expect = 0.54
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
+L I V ED VY C ++ GT +L +
Sbjct: 81 FTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGT-----RLEI 116
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 26.1 bits (58), Expect = 0.56
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGT 50
L I V ED Y C T T
Sbjct: 77 HLVISPVRTEDSATYYCAFTLPPPT 101
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 26.2 bits (57), Expect = 0.56
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 52
N SL+IQ D +Y+C ++ +
Sbjct: 95 CPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDT 128
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 25.9 bits (57), Expect = 0.59
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAE 52
I ++ G Y C +E
Sbjct: 57 VKFYIPDMNSRMAGQYSCIYRVGELWSE 84
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Length = 259
Score = 26.1 bits (58), Expect = 0.60
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
+L I + PED Y C +S GT KL +
Sbjct: 71 FTLTISSLQPEDIATYYCQQGHSYPYTFGGGT-----KLDI 106
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 25.9 bits (57), Expect = 0.60
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAE----TKCKLTV 59
+ I + D G+Y+C A + A+ +L V
Sbjct: 84 HMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVV 121
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked
with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Length = 250
Score = 26.1 bits (58), Expect = 0.61
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
SL I + ED G Y C N+L GT KL +
Sbjct: 74 YSLTISNLEQEDIGTYFCQQGNTLPWTFGGGT-----KLEI 109
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 25.7 bits (57), Expect = 0.61
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETK 54
L I ED VY C G + K
Sbjct: 75 GLIITATQIEDSAVYFCAMRGDYGGSGNK 103
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 26.1 bits (57), Expect = 0.66
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNS 47
K G + L I+ PED Y+C
Sbjct: 68 KEGYSYLYIKGSQPEDSATYLCARNTG 94
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 25.5 bits (55), Expect = 0.73
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 2 KHDNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 53
+H++ I + + ++ ++ + E+ E G YVC S
Sbjct: 39 QHNDKNIGGDEDDKNIGSDEDHLSLKEFSEL--EQSGYYVCYPRGSKPEDAN 88
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 25.7 bits (57), Expect = 0.75
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGT 50
++L I V +D Y C +
Sbjct: 80 STLTIHNVEKQDIATYYCALWEAQQE 105
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 25.8 bits (57), Expect = 0.75
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETK 54
L I ED VY C G + K
Sbjct: 75 GLIITATQIEDSAVYFCAMRGDYGGSGNK 103
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 25.7 bits (56), Expect = 0.75
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 21 KNGVASLQIQEVFPEDEGVYVC 42
G ++ + ++ ED G Y C
Sbjct: 80 DAGFFTVTMTDLREEDSGHYWC 101
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 25.8 bits (57), Expect = 0.82
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 11/42 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVR 60
+L+I V ED GVY C + + GT KL ++
Sbjct: 109 FTLRISRVEAEDLGVYYCFQASLVPLTFGAGT-----KLELK 145
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 25.7 bits (57), Expect = 0.83
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 11/42 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVR 60
I+ + ED Y C +++L GT L ++
Sbjct: 93 FVFTIENMLSEDVADYYCLQSDNLPYTFGGGT-----NLEIK 129
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 25.6 bits (56), Expect = 0.83
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGT 50
+ L ++E+ +D Y+C S G+
Sbjct: 70 SYLLLKELQMKDSASYLCAVQASGGS 95
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22
protein, T cell receptor delta, immune system; HET: NAG
MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 25.7 bits (57), Expect = 0.87
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 25 ASLQIQEVFPEDEGVYVCT 43
+ L I + EDE +Y C+
Sbjct: 79 SILTIYSLEEEDEAIYYCS 97
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system;
2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 25.6 bits (56), Expect = 0.88
Identities = 4/28 (14%), Positives = 5/28 (17%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAE 52
I + G Y C
Sbjct: 64 PEFVIDHMDANKAGRYQCQYRIGHYRFR 91
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen,
allergen, antimic bacteriolytic enzyme, glycosidase,
hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A
1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A
1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A
1rih_L 1p2c_A ...
Length = 213
Score = 25.6 bits (57), Expect = 0.93
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 11/42 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTVR 60
+L I V ED G+Y C +NS GT KL ++
Sbjct: 71 FTLSINSVETEDFGMYFCQQSNSWPYTFGGGT-----KLEIK 107
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta
sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1
PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Length = 109
Score = 25.1 bits (56), Expect = 1.0
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
ASL I + EDE Y C + ++ GT +LTV
Sbjct: 72 ASLTISGLKTEDEADYYCQSYDARNVVFGGGT-----RLTV 107
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 25.5 bits (56), Expect = 1.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 25 ASLQIQEVFPEDEGVYVC 42
+L+I V ED G+Y C
Sbjct: 113 FTLKISRVEAEDLGIYYC 130
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody,
dimer, SCFV, variable domain, immune system; 2.60A {Mus
musculus} SCOP: b.1.1.1 b.1.1.1
Length = 240
Score = 25.4 bits (56), Expect = 1.1
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 25 ASLQIQEVFPEDEGVYVCT 43
+L I V +D Y C
Sbjct: 75 FTLIIDPVEADDVATYYCQ 93
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 25.0 bits (55), Expect = 1.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 26 SLQIQEVFPEDEGVYVC 42
S+ I + P D G Y C
Sbjct: 75 SISISNITPADAGTYYC 91
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 25.2 bits (55), Expect = 1.2
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAE 52
A I + + G Y C + +G ++
Sbjct: 58 ARFSIPSMTEDYAGRYRCYYRSPVGWSQ 85
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D
3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 25.3 bits (55), Expect = 1.2
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 25 ASLQIQEVFPEDEGVYVC 42
++L + D VY C
Sbjct: 70 STLILHRATLRDAAVYYC 87
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 25.2 bits (55), Expect = 1.2
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 4 DNSTIPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 52
+ S P ++ N L+ K K A I + G Y C + G +E
Sbjct: 40 EGSPEPWDTQNPLEPKNK---ARFSIPSMTEHHAGRYRCYYYSPAGWSE 85
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 25.2 bits (56), Expect = 1.3
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
+L I V +D +Y C + + GT KL +
Sbjct: 70 FTLTIDPVEADDTAIYFCQQSWNGPLTFGAGT-----KLEL 105
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG;
2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 25.1 bits (54), Expect = 1.3
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 35 EDEGVYVCTATNSLGTAETKCKLTV 59
+ V C T S ++V
Sbjct: 60 SHDTVLQCHFTCSGKQESMNSNVSV 84
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 25.1 bits (54), Expect = 1.3
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 59
N ++ V +++ +C + G + K LTV
Sbjct: 47 NNRKVYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTV 82
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 25.2 bits (56), Expect = 1.3
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAET 53
+L I ++ D Y C +T T +
Sbjct: 71 FTLTISDLECADAATYYCQSTYENPTYVS 99
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion;
2.40A {Homo sapiens}
Length = 184
Score = 25.2 bits (55), Expect = 1.4
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 6/40 (15%)
Query: 20 YKNGV------ASLQIQEVFPEDEGVYVCTATNSLGTAET 53
K A L I + G Y C+ N +
Sbjct: 41 EKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLP 80
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 25.1 bits (55), Expect = 1.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNS 47
ASL I + EDE Y C +
Sbjct: 91 ASLAISGLRSEDEADYYCATWDD 113
Score = 23.9 bits (52), Expect = 3.5
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNS 47
+ L + + Y C T+
Sbjct: 199 SYLSLTPEQWKSHRSYSCQVTHE 221
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon,
T-cell receptor, signalling, IMMU; 2.50A {Cricetulus
migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Length = 213
Score = 24.9 bits (55), Expect = 1.6
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
+S I + ED G Y C + GT KL +
Sbjct: 71 SSFTISSLESEDIGSYYCQQYYNYPWTFGPGT-----KLEI 106
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 25.0 bits (55), Expect = 1.6
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 25 ASLQIQEVFPEDEGVYVC 42
A+L I + DE Y C
Sbjct: 70 ATLTISKAQAGDEADYYC 87
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 24.9 bits (55), Expect = 1.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 26 SLQIQEVFPEDEGVYVC 42
S+ I + P D G Y C
Sbjct: 80 SISISNITPADAGTYYC 96
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 25.0 bits (54), Expect = 1.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 21 KNGVASLQIQEVFPEDEGVYVC 42
+ V++L+IQ D VY+C
Sbjct: 96 EGSVSTLKIQRTERGDSAVYLC 117
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 24.5 bits (54), Expect = 1.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 26 SLQIQEVFPEDEGVYVC 42
S++I V PED G Y C
Sbjct: 79 SIRISNVTPEDAGTYYC 95
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds,
immune system; 2.70A {Homo sapiens}
Length = 126
Score = 24.6 bits (54), Expect = 1.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 25 ASLQIQEVFPEDEGVYVCTA 44
L I E+ PEDE +Y C
Sbjct: 79 GYLSISELQPEDEAMYYCAM 98
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 24.4 bits (53), Expect = 2.0
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 21 KNGVASLQIQEVFPEDEGVYVC 42
+G+ +++ + ED G+Y C
Sbjct: 77 DHGLLRVRMVNLQVEDSGLYQC 98
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide
1; immunoglobulin domain, beta sheet, polymorphism,
immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Length = 116
Score = 24.4 bits (54), Expect = 2.1
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 11/41 (26%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSL------GTAETKCKLTV 59
L I E+ PEDE +Y C GT +LTV
Sbjct: 77 GYLSISELQPEDEAMYYCAMGARSTHVFGSGT-----QLTV 112
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 24.2 bits (53), Expect = 2.1
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 8/40 (20%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAE------TKCKLTV 59
L++Q CT + + +L V
Sbjct: 75 ELRLQVANMSQGRTLYCTCSADRVGNTLYFGEGS--RLIV 112
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 24.5 bits (53), Expect = 2.1
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAE 52
A+ I + G Y C + + +
Sbjct: 174 ANFSIGPMMLALAGTYRCYGSVTHTPYQ 201
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 24.6 bits (53), Expect = 2.4
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLG 49
+L I P D Y+C + G
Sbjct: 73 TLYIAASQPGDSATYLCAVRPTSG 96
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 24.5 bits (53), Expect = 2.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
SL + V +DEG++ C A N G ETK VR
Sbjct: 433 SLFLPAVGIQDEGIFRCQAMNRNGK-ETKSNYRVR 466
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 24.1 bits (53), Expect = 2.4
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGT 50
LQ V D VY C + + G
Sbjct: 73 HLQKASVQESDSAVYYCALSENYGN 97
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 24.2 bits (52), Expect = 2.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLG 49
SL I P D G+Y+C S G
Sbjct: 73 SLHITAAQPGDTGLYLCAGAGSQG 96
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 24.3 bits (53), Expect = 2.9
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGT 50
ASL + + +DE VY C +
Sbjct: 68 ASLTVSGLQTDDEAVYYCGSLVGNWD 93
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4;
immunoglobulin variable domain-like beta-sandwich,
homodimer, immune system; 2.00A {Mus musculus} SCOP:
b.1.1.1
Length = 117
Score = 23.8 bits (51), Expect = 3.1
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 12 SSNILDLKYKNGVASLQIQEVFPEDEGVYVC 42
+ +L IQ + D G+Y+C
Sbjct: 62 DYPFCSGTFNESRVNLTIQGLRAVDTGLYLC 92
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 24.2 bits (53), Expect = 3.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 25 ASLQIQEVFPEDEGVYVC 42
A+L I PEDE Y C
Sbjct: 69 ATLTISGAQPEDEAAYYC 86
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 23.7 bits (52), Expect = 3.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAET 53
SL I + P D Y C A+ + GT +
Sbjct: 72 SLHIADSQPGDSATYFCAASANSGTYQR 99
>3sob_L Antibody light chain; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Length = 237
Score = 23.7 bits (52), Expect = 3.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNS 47
+L I + PED Y C + +
Sbjct: 94 FTLTISSLQPEDFATYYCQQSYT 116
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 23.8 bits (51), Expect = 3.6
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTA 51
SL I D Y+C ++ T
Sbjct: 76 SLHITASQLSDSASYICVVSDRGSTL 101
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 23.7 bits (51), Expect = 3.7
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 25 ASLQIQEVFPEDEGVYVCTATNSLGTAET 53
A+ I + + G Y C + + +
Sbjct: 63 ANFSISRMTQDLAGTYRCYGSVTHSPYQV 91
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C*
3bx7_C
Length = 130
Score = 23.9 bits (51), Expect = 3.7
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 22 NGVASLQIQEVFPEDEGVYVCTATNS 47
+L IQ + D G+Y+C
Sbjct: 74 GNQVNLTIQGLRAMDTGLYICKVELM 99
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 23.9 bits (51), Expect = 3.9
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 21 KNGVASLQIQEVFPEDEGVYVCTATNS 47
++L I +D Y C +
Sbjct: 69 DAKHSTLHITATLLDDTATYFCVVGDR 95
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 23.9 bits (51), Expect = 4.2
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAETKC----KLTVR 60
+L I++ ED G Y C A + + L+V+
Sbjct: 71 TLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVK 109
>1oga_E TRBC1, T-cell receptor beta chain C region; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E
2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D*
3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D*
2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Length = 252
Score = 23.8 bits (51), Expect = 4.5
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 19 KYKNGVASLQIQEVFPEDEGVYVCT 43
+ K L + Y+C
Sbjct: 70 REKKESFPLTVTSAQKNPTAFYLCA 94
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 23.8 bits (51), Expect = 4.6
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 26 SLQIQEVFPEDEGVYVCT 43
L+ V D VY C
Sbjct: 83 HLRKASVHWSDSAVYFCA 100
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 23.2 bits (50), Expect = 5.8
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 21 KNGVASLQIQEVFPEDEGVYVC 42
+G+ +++ + ED G+Y C
Sbjct: 72 DHGLLRVRMVNLQVEDSGLYQC 93
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D
3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D
2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 23.1 bits (49), Expect = 7.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 26 SLQIQEVFPEDEGVYVC 42
SL I++ P D +Y C
Sbjct: 74 SLHIRDSQPSDSALYFC 90
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 23.1 bits (49), Expect = 7.7
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 26 SLQIQEVFPEDEGVYVCTATNSLGTAET 53
+L I++ ED G Y C A S
Sbjct: 73 TLHIRDAQLEDSGTYFCAAEASNTNKVV 100
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 23.1 bits (49), Expect = 8.8
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 60
++L + + Y C T+ T
Sbjct: 177 TSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKT 213
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 22.9 bits (50), Expect = 9.1
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 25 ASLQIQEVFPEDEGVYVCT 43
+L I V +D Y C
Sbjct: 75 FTLTIDPVEADDVATYYCQ 93
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 22.6 bits (48), Expect = 9.7
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 24 VASLQIQEVFPEDEGVYVCTATNS 47
V+ L I E + + C +
Sbjct: 81 VSELPIVERDWLNGKTFKCKVNSG 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.359
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 790,395
Number of extensions: 31410
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 477
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)