BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12429
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/191 (56%), Positives = 131/191 (68%), Gaps = 21/191 (10%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVF 66
FI + ++ GKLLRNY+QNIDTLEQVAGI+ +I+CHGSFATASC C ++V EA++ D+F
Sbjct: 92 FIALSDKEGKLLRNYTQNIDTLEQVAGIQRIIQCHGSFATASCLICKYKVDCEAVRGDIF 151
Query: 67 QQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMT 126
Q + PA E + +MKP+IVFFGE LP+ FH AM
Sbjct: 152 NQVVPRCP-------------RCPADEPLA--------IMKPEIVFFGENLPEQFHRAMK 190
Query: 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVIID 186
DK+ DLLIVIGSSLKVRPVALIP+S+P VPQILINRE L HL+FDVELLGD DVII+
Sbjct: 191 YDKDEVDLLIVIGSSLKVRPVALIPSSIPHEVPQILINREPLPHLHFDVELLGDCDVIIN 250
Query: 187 TLCRALGESWT 197
LC LG +
Sbjct: 251 ELCHRLGGEYA 261
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 116/207 (56%), Gaps = 21/207 (10%)
Query: 6 AFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKA 63
+FIKML+ GKLLRNY+QNID LE AGI + +++CHGSFATA+C C + E I
Sbjct: 257 SFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFN 316
Query: 64 DV-----------FQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPT--PSRGVMKPDI 110
+ +++R ++ G S PP S GV+KPDI
Sbjct: 317 KIRNLELPLCPYCYKKR----REYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDI 372
Query: 111 VFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH 170
FFGE LP+ FH ++ D CDLLI IG+SLKV PV+ I N +P VPQ+LINR+ + H
Sbjct: 373 TFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH 432
Query: 171 LNFDVELLGDGDVIIDTLCRALGESWT 197
FD+ LLG D I + + G WT
Sbjct: 433 AEFDLSLLGYCDDIAAMVAQKCG--WT 457
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 113/203 (55%), Gaps = 13/203 (6%)
Query: 6 AFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKA 63
+FIK L+ GKLLRNY+QNID LE AGI + +++CHGSFATA+C C + E I
Sbjct: 119 SFIKXLQXKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFN 178
Query: 64 DVFQQRIXXXXXXXXXXXXXXXD-------ISVPAGESSSLPPT--PSRGVMKPDIVFFG 114
+ + + ++ G S PP S GV+KPDI FFG
Sbjct: 179 KIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSXSERPPYILNSYGVLKPDITFFG 238
Query: 115 EGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFD 174
E LP+ FH ++ D CDLLI IG+SLKV PV+ I N +P VPQ+LINR+ + H FD
Sbjct: 239 EALPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNXVPSHVPQVLINRDPVKHAEFD 298
Query: 175 VELLGDGDVIIDTLCRALGESWT 197
+ LLG D I + + G WT
Sbjct: 299 LSLLGYCDDIAAXVAQKCG--WT 319
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 109/205 (53%), Gaps = 38/205 (18%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKAD 64
F+++L G LLR Y+QNID LE+V+GI ++E HG+FA+A+CT C E I+AD
Sbjct: 91 FLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRAD 150
Query: 65 VFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTP-SRGVMKPDIVFFGEGLPDSFHS 123
V R+ P P GV+KPDIVFFGE LP F
Sbjct: 151 VMADRV---------------------------PRCPVCTGVVKPDIVFFGEPLPQRF-L 182
Query: 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNF-----DVELL 178
+D DLL+++G+SL+V P A + ++ SVP++LINR+ + L + DV L
Sbjct: 183 LHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQL 242
Query: 179 GDGDVIIDTLCRALGESWTGTLLEL 203
GD +++L LG WT + +L
Sbjct: 243 GDVVHGVESLVELLG--WTEEMRDL 265
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 109/205 (53%), Gaps = 38/205 (18%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKAD 64
F+++L G LLR Y+QNID LE+V+GI ++E HG+FA+A+CT C E I+AD
Sbjct: 98 FLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRAD 157
Query: 65 VFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTP-SRGVMKPDIVFFGEGLPDSFHS 123
V R+ P P GV+KPDIVFFGE LP F
Sbjct: 158 VMADRV---------------------------PRCPVCTGVVKPDIVFFGEPLPQRF-L 189
Query: 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNF-----DVELL 178
+D DLL+++G+SL+V P A + ++ SVP++LINR+ + L + DV L
Sbjct: 190 LHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQL 249
Query: 179 GDGDVIIDTLCRALGESWTGTLLEL 203
GD +++L LG WT + +L
Sbjct: 250 GDVVHGVESLVELLG--WTEEMRDL 272
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 109/205 (53%), Gaps = 38/205 (18%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKAD 64
F+++L G LLR Y+QNID LE+V+GI ++E HG+FA+A+CT C E I+AD
Sbjct: 97 FLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRAD 156
Query: 65 VFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTP-SRGVMKPDIVFFGEGLPDSFHS 123
V R+ P P GV+KPDIVFFGE LP F
Sbjct: 157 VMADRV---------------------------PRCPVCTGVVKPDIVFFGEPLPQRF-L 188
Query: 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNF-----DVELL 178
+D DLL+++G+SL+V P A + ++ SVP++LINR+ + L + DV L
Sbjct: 189 LHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQL 248
Query: 179 GDGDVIIDTLCRALGESWTGTLLEL 203
GD +++L LG WT + +L
Sbjct: 249 GDVVHGVESLVELLG--WTEEMRDL 271
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 30/165 (18%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIE--NVIECHGSFATASC--TRCGHRVSAEAIK 62
F+++L+ G LLR Y+QNIDTLE++AG+E +++E HG+F T+ C C H +K
Sbjct: 118 FMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMK 177
Query: 63 ADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFH 122
+F + P E + ++KPDIVFFGE LP F
Sbjct: 178 EKIFSE-------------------VTPKCEDC-------QSLVKPDIVFFGESLPARFF 211
Query: 123 SAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRER 167
S M D + DLL+V+G+SL+V+P A + + P S P++LIN+E+
Sbjct: 212 SCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEK 256
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 30/165 (18%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIE--NVIECHGSFATASC--TRCGHRVSAEAIK 62
F+++L+ G LLR Y+QNIDTLE++AG+E +++E HG+F T+ C C H +K
Sbjct: 118 FMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMK 177
Query: 63 ADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFH 122
+F + P E + ++KPDIVFFGE LP F
Sbjct: 178 EKIFSE-------------------VTPKCEDC-------QSLVKPDIVFFGESLPARFF 211
Query: 123 SAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRER 167
S M D + DLL+V+G+SL+V+P A + + P S P++LIN+E+
Sbjct: 212 SCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEK 256
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 38/178 (21%)
Query: 4 FDAFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHGSFATASCTRCGHRVSAEAI 61
F +K+ + L R Y+QNIDTLE+ AG+++ +IE HGSFA C CG +
Sbjct: 99 FHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVF 158
Query: 62 KADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSF 121
K+ + + I D+ GE ++KP IVFFGE LPDSF
Sbjct: 159 KSKLAEHPI---------KDFVKCDV---CGE-----------LVKPAIVFFGEDLPDSF 195
Query: 122 HSAMTLDKN-------------RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRE 166
D + L+IV+G+SL V P A +P +P V ++L N E
Sbjct: 196 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLE 253
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 38/178 (21%)
Query: 4 FDAFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHGSFATASCTRCGHRVSAEAI 61
F +K+ + L R Y+QNIDTLE+ AG+++ +IE HGSFA C CG +
Sbjct: 92 FHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVF 151
Query: 62 KADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSF 121
K+ + + I D+ GE ++KP IVFFGE LPDSF
Sbjct: 152 KSKLAEHPI---------KDFVKCDV---CGE-----------LVKPAIVFFGEDLPDSF 188
Query: 122 HSAMTLDKN-------------RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRE 166
D + L+IV+G+SL V P A +P +P V ++L N E
Sbjct: 189 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLE 246
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 38/178 (21%)
Query: 4 FDAFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHGSFATASCTRCGHRVSAEAI 61
F +K+ + L R Y+QNIDTLE+ AG+++ +IE HGSFA C CG +
Sbjct: 102 FHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVF 161
Query: 62 KADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSF 121
K+ + + I D+ GE ++KP IVFFGE LPDSF
Sbjct: 162 KSKLAEHPI---------KDFVKCDV---CGE-----------LVKPAIVFFGEDLPDSF 198
Query: 122 HSAMTLDKN-------------RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRE 166
D + L+IV+G+SL V P A +P +P V ++L N E
Sbjct: 199 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLE 256
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 38/178 (21%)
Query: 4 FDAFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHGSFATASCTRCGHRVSAEAI 61
F +K+ + L R Y+QNIDTLE+ AG+++ +IE HGSFA C CG +
Sbjct: 110 FHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVF 169
Query: 62 KADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSF 121
K+ + + I D+ GE ++KP IVFFGE LPDSF
Sbjct: 170 KSKLAEHPI---------KDFVKCDV---CGE-----------LVKPAIVFFGEDLPDSF 206
Query: 122 HSAMTLDKN-------------RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRE 166
D + L+IV+G+SL V P A +P +P V ++L N E
Sbjct: 207 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLE 264
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 38/178 (21%)
Query: 4 FDAFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHGSFATASCTRCGHRVSAEAI 61
F +K+ + L R Y+QNIDTLE+ AG+++ +IE HGSFA C CG +
Sbjct: 100 FHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVF 159
Query: 62 KADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSF 121
K+ + + I D+ GE ++KP IVFFGE LPDSF
Sbjct: 160 KSKLAEHPI---------KDFVKCDV---CGE-----------LVKPAIVFFGEDLPDSF 196
Query: 122 HSAMTLDKN-------------RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRE 166
D + L+IV+G+SL V P A +P +P V ++L N E
Sbjct: 197 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLE 254
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 38/178 (21%)
Query: 4 FDAFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHGSFATASCTRCGHRVSAEAI 61
F +K+ + L R Y+QN DTLE+ AG+++ +IE HGSFA C CG +
Sbjct: 110 FHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVF 169
Query: 62 KADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSF 121
K+ + + I D+ GE ++KP IVFFGE LPDSF
Sbjct: 170 KSKLAEHPIKDFVKC---------DV---CGE-----------LVKPAIVFFGEDLPDSF 206
Query: 122 HSAMTLDKN-------------RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRE 166
D + L+IV+G+SL V P A +P +P V ++L N E
Sbjct: 207 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLE 264
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 30/143 (20%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
LE G + +QNID L Q AG + VIE HG+ C RC + + E DV ++
Sbjct: 86 LEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVE----DVIKKL- 140
Query: 71 XXXXXXXXXXXXXXXDISVPAGESSSLPPTPS-RGVMKPDIVFFGEGLP-DSFHSAMTLD 128
ESS +P +++P+IVFFGE LP D+ A+ L
Sbjct: 141 ----------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLS 178
Query: 129 KNRCDLLIVIGSSLKVRPVALIP 151
+R L+IV+GSSL V P A +P
Sbjct: 179 -SRASLMIVLGSSLVVYPAAELP 200
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
L + G+ + +QNID L + AG +N++E HGS CT CG + A+ ++ I
Sbjct: 93 LGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG-------VVAENYKSPI 145
Query: 71 XXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKN 130
D S+P + G+++P +V+FGE L + + +
Sbjct: 146 CPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELA 205
Query: 131 RCDLLIVIGSSLKVRPVALI-PNSLPPSVPQILINRERLSHLN 172
CDL +V+G+S V P A+ P VP N E N
Sbjct: 206 HCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN 248
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
L + G+ + +QNID L + AG +N++E HGS CT CG + A+ ++ I
Sbjct: 101 LGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG-------VVAENYKSPI 153
Query: 71 XXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKN 130
D S+P + G+++P +V+FGE L + + +
Sbjct: 154 CPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELA 213
Query: 131 RCDLLIVIGSSLKVRPVALI-PNSLPPSVPQILINRERLSHLN 172
CDL +V+G+S V P A+ P VP N E N
Sbjct: 214 HCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN 256
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
L + G+ + +QNID L + AG +N++E HGS CT CG + A+ ++ I
Sbjct: 97 LGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG-------VVAENYKSPI 149
Query: 71 XXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKN 130
D S+P + G+++P +V+FGE L + + +
Sbjct: 150 CPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELA 209
Query: 131 RCDLLIVIGSSLKVRPVALI-PNSLPPSVPQILINRERLSHLN 172
CDL +V+G+S V P A+ P VP N E N
Sbjct: 210 HCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN 252
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
L + G+ + +QNID L + AG +N++E HGS CT CG + A+ ++ I
Sbjct: 99 LGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG-------VVAENYKSPI 151
Query: 71 XXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKN 130
D S+P + G+++P +V+FGE L + + +
Sbjct: 152 CPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELA 211
Query: 131 RCDLLIVIGSSLKVRPVALI-PNSLPPSVPQILINRERLSHLN 172
CDL +V+G+S V P A+ P VP N E N
Sbjct: 212 HCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN 254
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 30/143 (20%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
LE G + +QNID L Q AG + VIE +G+ C RC + + E DV ++
Sbjct: 86 LEEKGLIEAVITQNIDRLHQRAGSKKVIELYGNVEEYYCVRCEKKYTVE----DVIKKL- 140
Query: 71 XXXXXXXXXXXXXXXDISVPAGESSSLPPTPS-RGVMKPDIVFFGEGLP-DSFHSAMTLD 128
ESS +P +++P+IVFFGE LP D+ A+ L
Sbjct: 141 ----------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLS 178
Query: 129 KNRCDLLIVIGSSLKVRPVALIP 151
+R L+IV+GSSL V P A +P
Sbjct: 179 -SRASLMIVLGSSLVVYPAAELP 200
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 8/163 (4%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
L + G+ + +QNID L + AG +N++E HGS CT CG + A+ ++ I
Sbjct: 97 LGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCG-------VVAENYKSPI 149
Query: 71 XXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKN 130
D S+P + G+++P +V+FGE L + + +
Sbjct: 150 CPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELA 209
Query: 131 RCDLLIVIGSSLKVRPVA-LIPNSLPPSVPQILINRERLSHLN 172
CDL +V+G+S V P A P VP N E N
Sbjct: 210 HCDLCLVVGTSSVVYPAAXFAPQVAARGVPVAEFNTETTPATN 252
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 30/143 (20%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
LE G + +QNID L Q AG + VIE G+ C RC + + E DV ++
Sbjct: 86 LEEKGLIEAVITQNIDRLHQRAGSKKVIELAGNVEEYYCVRCEKKYTVE----DVIKKL- 140
Query: 71 XXXXXXXXXXXXXXXDISVPAGESSSLPPTPS-RGVMKPDIVFFGEGLP-DSFHSAMTLD 128
ESS +P +++P+IVFFGE LP D+ A+ L
Sbjct: 141 ----------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLS 178
Query: 129 KNRCDLLIVIGSSLKVRPVALIP 151
+R L+IV+GSSL V P A +P
Sbjct: 179 -SRASLMIVLGSSLVVYPAAELP 200
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 38/153 (24%)
Query: 3 AFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIK 62
A AF + LER G L +QN+D L + AG NVI HGS CT C + E+
Sbjct: 79 AHQAFAE-LERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVES-- 135
Query: 63 ADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPS----RGVMKPDIVFFGEGLP 118
+ +PP P +++P +V+FGE LP
Sbjct: 136 -------------------------------APKIPPLPKCDKCGSLLRPGVVWFGEMLP 164
Query: 119 DSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIP 151
+ R D++IV G+S V+P A +P
Sbjct: 165 PDVLDRAMREVERADVIIVAGTSAVVQPAASLP 197
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 38/153 (24%)
Query: 3 AFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIK 62
A AF + LER G L +QN+D L + AG NVI HGS CT C + E+
Sbjct: 79 AHQAFAE-LERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVES-- 135
Query: 63 ADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPS----RGVMKPDIVFFGEGLP 118
+ +PP P +++P +V+FGE LP
Sbjct: 136 -------------------------------APKIPPLPKCDKCGSLLRPGVVWFGEMLP 164
Query: 119 DSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIP 151
+ R D++IV G+S V+P A +P
Sbjct: 165 PDVLDRAMREVERADVIIVAGTSAVVQPAASLP 197
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 38/153 (24%)
Query: 3 AFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIK 62
A AF + LER G L +QN+D L + AG NVI HGS CT C + E+
Sbjct: 90 AHQAFAE-LERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVES-- 146
Query: 63 ADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPS----RGVMKPDIVFFGEGLP 118
+ +PP P +++P +V+FGE LP
Sbjct: 147 -------------------------------APKIPPLPKCDKCGSLLRPGVVWFGEMLP 175
Query: 119 DSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIP 151
+ R D++IV G+S V+P A +P
Sbjct: 176 PDVLDRAMREVERADVIIVAGTSAVVQPAASLP 208
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 38/153 (24%)
Query: 3 AFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIK 62
A AF + LER G L +QN+D L + AG NVI HGS CT C + E+
Sbjct: 79 ANQAFAE-LERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVES-- 135
Query: 63 ADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPS----RGVMKPDIVFFGEGLP 118
+ +PP P +++P +V+FGE LP
Sbjct: 136 -------------------------------APKIPPLPKCDKCGSLLRPGVVWFGEMLP 164
Query: 119 DSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIP 151
+ R D++IV G+S V+P A +P
Sbjct: 165 PDVLDRAMREVERADVIIVAGTSAVVQPAASLP 197
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 38/153 (24%)
Query: 3 AFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIK 62
A AF + LER G L +QN+D L + AG NVI HGS CT C + E+
Sbjct: 79 AHQAFAE-LERLGVLKCLITQNVDGLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVES-- 135
Query: 63 ADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPS----RGVMKPDIVFFGEGLP 118
+ +PP P +++P +V+ GE LP
Sbjct: 136 -------------------------------APKIPPLPKCDKCGSLLRPGVVWAGEMLP 164
Query: 119 DSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIP 151
A + R D++IV G+S V+P A +P
Sbjct: 165 PDVLDAAMREVERADVIIVAGTSAVVQPAASLP 197
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 8 IKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQ 67
I LER G + +QNID L Q AG V+E HGS C C D +
Sbjct: 85 IAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNK 144
Query: 68 QRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTL 127
GE S V KP +V FGE LP
Sbjct: 145 ------------------------GEIPRCRKCGSYYV-KPRVVLFGEPLPQRTLFEAIE 179
Query: 128 DKNRCDLLIVIGSSLKVRPVALIPN-SLPPSVPQILINRE-RLSHLNFDVELLGD-GDVI 184
+ CD +V+GSSL V P A +P + I++N E ++ FDV+++G G+V+
Sbjct: 180 EAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVL 239
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 38/153 (24%)
Query: 3 AFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIK 62
A AF + LER G L +QN+D L + AG NVI HGS CT C + E+
Sbjct: 79 AHQAFAE-LERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVES-- 135
Query: 63 ADVFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPS----RGVMKPDIVFFGEGLP 118
+ +PP P +++P +V+ GE LP
Sbjct: 136 -------------------------------APKIPPLPKCDKCGSLLRPGVVWAGEMLP 164
Query: 119 DSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIP 151
+ R D++IV G+S V+P A +P
Sbjct: 165 PDVLDRAMREVERADVIIVAGTSAVVQPAASLP 197
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 31/141 (21%)
Query: 8 IKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAI---KAD 64
+ LE G L +QN+D L + +G VI HG+ A C C V I K
Sbjct: 91 LSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIXLQKTS 150
Query: 65 VFQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPP-TPSRGVMKPDIVFFGEGLPDSFHS 123
F + LPP P G+ KP+I+ FGE +
Sbjct: 151 HFXHQ---------------------------LPPECPCGGIFKPNIILFGEVVSSDLLK 183
Query: 124 AMTLDKNRCDLLIVIGSSLKV 144
+ +CDLL+VIG+S V
Sbjct: 184 EAEEEIAKCDLLLVIGTSSTV 204
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 31/138 (22%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAI---KADVFQ 67
LE G L +QN+D L + +G VI HG+ A C C V I K F
Sbjct: 119 LESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFM 178
Query: 68 QRIXXXXXXXXXXXXXXXDISVPAGESSSLPP-TPSRGVMKPDIVFFGEGLPDSFHSAMT 126
+ LPP P G+ KP+I+ FGE +
Sbjct: 179 HQ---------------------------LPPECPCGGIFKPNIILFGEVVSSDLLKEAE 211
Query: 127 LDKNRCDLLIVIGSSLKV 144
+ +CDLL+VIG+S V
Sbjct: 212 EEIAKCDLLLVIGTSSTV 229
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 37/146 (25%)
Query: 6 AFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADV 65
A K+ + G +QNID L + AG NVI HG C++ G +
Sbjct: 73 ALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG----- 127
Query: 66 FQQRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLP---DSFH 122
D++ P P ++P +V+FGE +P D +
Sbjct: 128 --------------------DVTPEDKCHCCQFPAP----LRPHVVWFGE-MPLGMDEIY 162
Query: 123 SAMTLDKNRCDLLIVIGSSLKVRPVA 148
A+++ D+ I IG+S V P A
Sbjct: 163 MALSM----ADIFIAIGTSGHVYPAA 184
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 24/196 (12%)
Query: 10 MLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVFQ 67
LER G L SQN+D L +G + + E HG+ C +C + + + +
Sbjct: 100 QLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGL 159
Query: 68 QRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTL 127
+ RG ++ I+ + + LPD +
Sbjct: 160 KATGRLCTVAKARGLRA-----------------CRGELRDTILDWEDSLPDRDLALADE 202
Query: 128 DKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQ-ILINRERLSH-LNFDVELLGDGDVII 185
DL I +G+SL++RP +P + + +++N + H + D+ + G D ++
Sbjct: 203 ASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVM 262
Query: 186 DTLCRALG---ESWTG 198
L + LG +W G
Sbjct: 263 TRLMKHLGLEIPAWDG 278
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 24/196 (12%)
Query: 10 MLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVFQ 67
LER G L SQN+D L +G + + E HG+ C +C + + + +
Sbjct: 100 QLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGL 159
Query: 68 QRIXXXXXXXXXXXXXXXDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTL 127
+ RG ++ I+ + + LPD +
Sbjct: 160 KATGRLCTVAKARGLRA-----------------CRGELRDTILDWEDSLPDRDLALADE 202
Query: 128 DKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQ-ILINRERLSH-LNFDVELLGDGDVII 185
DL I +G+SL++RP +P + + +++N + H + D+ + G D ++
Sbjct: 203 ASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVM 262
Query: 186 DTLCRALG---ESWTG 198
L LG +W G
Sbjct: 263 TRLMEHLGLEIPAWDG 278
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 173 FDVELLGDGDVIIDTLCRALGESWTGTLLELYNSLPPSVPQILINRERLSHLNFDVELLG 232
F V LLG+ V TL G E+ NS +I++++E ++ + +D+ G
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 233 DGDVIIDTLCRALGESWTV 251
D + C G+++ +
Sbjct: 73 DAGGWLQDHCLQTGDAFLI 91
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 86 DISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVR 145
D V GE++ L P +G+ +P +++ +G+P AM+ + + IV G +L +
Sbjct: 117 DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS-SRVRIVDGGNLLIS 175
Query: 146 PVALIPNSLPPSVPQILINRERLSHLNFDVEL 177
V I + Q L+ S+ V++
Sbjct: 176 NVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 86 DISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVR 145
D V GE++ L P +G+ +P +++ +G+P AM+ + + IV G +L +
Sbjct: 117 DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS-SRVRIVDGGNLLIS 175
Query: 146 PVALIPNSLPPSVPQILINRERLSHLNFDVEL 177
V I + Q L+ S+ V++
Sbjct: 176 NVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From
Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 265
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%)
Query: 91 AGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVA 148
A E PP +KP+ G GLP + T + +L IVIG K P A
Sbjct: 78 AAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAA 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,600,080
Number of Sequences: 62578
Number of extensions: 293465
Number of successful extensions: 744
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 74
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)