Query psy12429
Match_columns 268
No_of_seqs 218 out of 1458
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:03:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 7.8E-46 1.7E-50 328.5 14.4 161 2-188 70-235 (235)
2 PRK14138 NAD-dependent deacety 100.0 1.3E-45 2.8E-50 328.8 15.7 167 2-194 75-243 (244)
3 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 1.9E-45 4.1E-50 330.4 13.8 182 2-185 74-260 (260)
4 PTZ00410 NAD-dependent SIR2; P 100.0 3.5E-44 7.5E-49 331.1 15.9 175 2-205 101-333 (349)
5 COG0846 SIR2 NAD-dependent pro 100.0 3.4E-44 7.3E-49 318.8 13.9 166 2-193 78-246 (250)
6 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 1.9E-43 4.1E-48 307.5 13.6 153 2-180 49-206 (206)
7 PTZ00409 Sir2 (Silent Informat 100.0 2.8E-43 6E-48 317.6 14.7 163 2-192 93-262 (271)
8 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 5.5E-43 1.2E-47 307.9 13.4 152 2-180 69-222 (222)
9 KOG2682|consensus 100.0 2.7E-43 6E-48 304.0 10.1 176 2-205 106-289 (314)
10 PRK05333 NAD-dependent deacety 100.0 1.7E-42 3.7E-47 315.2 15.8 190 2-195 84-280 (285)
11 KOG2684|consensus 100.0 2.6E-42 5.7E-47 318.3 15.5 186 2-199 157-346 (412)
12 PTZ00408 NAD-dependent deacety 100.0 7.2E-42 1.6E-46 304.0 14.5 160 2-192 71-235 (242)
13 PRK00481 NAD-dependent deacety 100.0 1.8E-41 3.9E-46 301.8 14.3 161 2-192 78-240 (242)
14 cd01407 SIR2-fam SIR2 family o 100.0 2E-41 4.3E-46 297.1 13.3 152 2-180 65-218 (218)
15 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 1.3E-40 2.8E-45 293.0 12.5 157 2-188 65-223 (224)
16 cd01411 SIR2H SIR2H: Uncharact 100.0 1E-40 2.2E-45 294.1 11.8 149 2-184 75-224 (225)
17 PF02146 SIR2: Sir2 family; I 100.0 8.1E-39 1.8E-43 272.2 11.4 118 2-146 61-178 (178)
18 KOG2683|consensus 100.0 1.2E-36 2.6E-41 262.6 10.3 185 2-187 113-304 (305)
19 cd00296 SIR2 SIR2 superfamily 100.0 7.3E-36 1.6E-40 261.6 13.2 149 2-179 67-221 (222)
20 KOG1905|consensus 100.0 1.3E-36 2.8E-41 269.8 7.3 174 3-194 103-281 (353)
21 KOG2684|consensus 98.7 4E-09 8.7E-14 98.6 1.6 62 187-248 282-344 (412)
22 KOG2682|consensus 98.2 2.9E-07 6.2E-12 80.8 -0.3 62 187-248 214-281 (314)
23 PTZ00410 NAD-dependent SIR2; P 97.0 0.0005 1.1E-08 64.4 2.9 58 191-248 211-325 (349)
24 PF00205 TPP_enzyme_M: Thiamin 96.6 0.0044 9.5E-08 49.9 5.4 65 124-188 70-137 (137)
25 cd01406 SIR2-like Sir2-like: P 94.8 0.031 6.7E-07 49.5 3.8 31 2-32 81-112 (242)
26 KOG1185|consensus 94.6 0.068 1.5E-06 52.0 5.7 81 114-194 259-343 (571)
27 TIGR03254 oxalate_oxc oxalyl-C 94.3 0.086 1.9E-06 52.3 6.0 80 113-192 247-329 (554)
28 PRK06456 acetolactate synthase 94.1 0.086 1.9E-06 52.5 5.7 69 125-193 267-338 (572)
29 PRK09259 putative oxalyl-CoA d 93.9 0.13 2.8E-06 51.3 6.5 81 113-193 254-337 (569)
30 PRK07524 hypothetical protein; 93.9 0.11 2.5E-06 51.2 5.9 70 124-193 256-329 (535)
31 PRK08979 acetolactate synthase 93.8 0.11 2.3E-06 52.0 5.7 68 125-193 266-336 (572)
32 PRK06882 acetolactate synthase 93.6 0.12 2.6E-06 51.5 5.7 68 125-193 266-336 (574)
33 PRK07789 acetolactate synthase 93.6 0.17 3.6E-06 51.0 6.6 68 125-193 291-361 (612)
34 PRK07979 acetolactate synthase 93.6 0.12 2.6E-06 51.6 5.6 68 125-193 266-336 (574)
35 CHL00099 ilvB acetohydroxyacid 93.6 0.14 3.1E-06 51.2 6.1 67 126-193 278-347 (585)
36 PRK08322 acetolactate synthase 93.6 0.14 3E-06 50.7 5.9 67 125-193 256-325 (547)
37 PRK05858 hypothetical protein; 93.5 0.16 3.5E-06 50.3 6.2 78 113-193 244-324 (542)
38 PRK08527 acetolactate synthase 93.4 0.14 3E-06 51.0 5.6 67 125-192 263-332 (563)
39 PRK06965 acetolactate synthase 93.3 0.14 2.9E-06 51.4 5.5 68 125-192 281-351 (587)
40 TIGR01504 glyox_carbo_lig glyo 93.3 0.14 3.1E-06 51.3 5.5 67 125-192 263-332 (588)
41 COG0028 IlvB Thiamine pyrophos 93.2 0.16 3.4E-06 50.7 5.7 77 124-202 259-341 (550)
42 PRK07418 acetolactate synthase 93.2 0.15 3.3E-06 51.3 5.6 67 125-192 284-353 (616)
43 PRK09107 acetolactate synthase 93.1 0.17 3.7E-06 50.8 5.8 68 125-193 274-344 (595)
44 PRK06154 hypothetical protein; 92.9 0.2 4.4E-06 50.0 5.9 66 125-193 274-342 (565)
45 PRK06725 acetolactate synthase 92.8 0.2 4.3E-06 50.1 5.7 68 125-193 274-344 (570)
46 PRK08978 acetolactate synthase 92.8 0.19 4.1E-06 49.9 5.5 77 125-202 256-336 (548)
47 PRK08327 acetolactate synthase 92.6 0.16 3.4E-06 50.8 4.8 65 126-193 274-344 (569)
48 PRK06466 acetolactate synthase 92.6 0.21 4.6E-06 49.8 5.6 68 125-193 266-336 (574)
49 PLN02470 acetolactate synthase 92.5 0.23 4.9E-06 49.8 5.7 68 125-193 273-343 (585)
50 PRK07525 sulfoacetaldehyde ace 92.4 0.24 5.2E-06 49.6 5.8 69 125-193 260-333 (588)
51 PRK08266 hypothetical protein; 92.1 0.25 5.4E-06 48.9 5.4 66 126-193 258-325 (542)
52 TIGR00118 acolac_lg acetolacta 92.0 0.28 6E-06 48.8 5.6 67 125-192 261-330 (558)
53 PRK06112 acetolactate synthase 92.0 0.35 7.6E-06 48.3 6.4 69 124-193 277-347 (578)
54 PRK11269 glyoxylate carboligas 92.0 0.27 6E-06 49.2 5.6 67 125-192 264-333 (591)
55 TIGR03393 indolpyr_decarb indo 91.9 0.23 5E-06 49.1 4.9 72 125-198 266-340 (539)
56 TIGR03457 sulphoacet_xsc sulfo 91.8 0.31 6.8E-06 48.7 5.8 69 125-193 256-329 (579)
57 TIGR02418 acolac_catab acetola 91.7 0.36 7.8E-06 47.7 6.0 67 125-193 256-325 (539)
58 PRK08611 pyruvate oxidase; Pro 91.6 0.35 7.6E-06 48.4 5.9 63 125-193 261-326 (576)
59 PRK06048 acetolactate synthase 91.5 0.34 7.3E-06 48.3 5.5 68 125-193 267-337 (561)
60 TIGR02720 pyruv_oxi_spxB pyruv 91.4 0.33 7.1E-06 48.6 5.4 66 125-193 258-326 (575)
61 PRK06276 acetolactate synthase 91.4 0.4 8.7E-06 48.0 6.0 69 124-193 262-333 (586)
62 PRK08155 acetolactate synthase 91.4 0.38 8.1E-06 47.9 5.8 68 125-193 271-341 (564)
63 PRK07282 acetolactate synthase 91.2 0.36 7.8E-06 48.2 5.5 68 125-193 270-340 (566)
64 PRK07092 benzoylformate decarb 91.2 0.47 1E-05 46.9 6.2 70 124-193 265-336 (530)
65 PRK08273 thiamine pyrophosphat 90.5 0.44 9.6E-06 47.8 5.4 65 125-193 266-333 (597)
66 PRK06546 pyruvate dehydrogenas 90.5 0.45 9.8E-06 47.6 5.4 62 125-193 259-323 (578)
67 PRK07710 acetolactate synthase 90.4 0.49 1.1E-05 47.2 5.6 68 125-193 275-345 (571)
68 PRK07064 hypothetical protein; 89.5 0.74 1.6E-05 45.5 6.0 67 125-193 258-327 (544)
69 PRK09124 pyruvate dehydrogenas 89.4 0.65 1.4E-05 46.4 5.5 62 126-193 260-324 (574)
70 TIGR00173 menD 2-succinyl-5-en 89.1 0.44 9.6E-06 45.9 4.0 64 127-193 271-337 (432)
71 PRK08617 acetolactate synthase 88.8 0.82 1.8E-05 45.4 5.8 66 126-193 263-331 (552)
72 PRK08199 thiamine pyrophosphat 88.8 0.77 1.7E-05 45.6 5.5 69 125-193 264-337 (557)
73 PRK11916 electron transfer fla 87.6 0.58 1.3E-05 43.5 3.5 58 131-192 251-310 (312)
74 PRK03363 fixB putative electro 87.5 0.61 1.3E-05 43.3 3.7 58 131-192 252-311 (313)
75 PLN00022 electron transfer fla 87.0 0.68 1.5E-05 43.8 3.7 59 131-193 293-353 (356)
76 COG3962 Acetolactate synthase 86.8 1.2 2.6E-05 43.5 5.2 69 125-193 289-358 (617)
77 COG2025 FixB Electron transfer 86.7 0.81 1.8E-05 42.5 4.0 59 131-193 251-311 (313)
78 PLN02573 pyruvate decarboxylas 82.5 3 6.5E-05 41.8 6.2 67 125-193 285-352 (578)
79 PRK06457 pyruvate dehydrogenas 82.3 2.2 4.8E-05 42.3 5.1 57 125-187 253-312 (549)
80 PRK09444 pntB pyridine nucleot 81.3 4.8 0.0001 39.2 6.8 86 104-191 353-461 (462)
81 TIGR03394 indol_phenyl_DC indo 76.0 4.1 8.9E-05 40.4 4.8 66 125-192 262-330 (535)
82 PRK07449 2-succinyl-5-enolpyru 75.4 3.4 7.3E-05 41.1 4.1 60 126-187 281-343 (568)
83 smart00834 CxxC_CXXC_SSSS Puta 71.7 1.6 3.5E-05 27.4 0.5 31 44-79 3-33 (41)
84 PF02233 PNTB: NAD(P) transhyd 69.9 8 0.00017 37.9 5.0 71 122-192 373-463 (463)
85 PF09723 Zn-ribbon_8: Zinc rib 69.5 1.7 3.7E-05 28.0 0.3 32 44-80 3-34 (42)
86 COG1282 PntB NAD/NADP transhyd 68.6 10 0.00022 36.1 5.2 84 109-192 358-463 (463)
87 PRK11032 hypothetical protein; 67.7 4.3 9.3E-05 34.1 2.4 28 45-80 123-150 (160)
88 PF07295 DUF1451: Protein of u 67.4 3.2 7E-05 34.3 1.6 28 45-80 111-138 (146)
89 cd01408 SIRT1 SIRT1: Eukaryoti 67.2 3.7 8.1E-05 36.4 2.0 51 191-241 181-235 (235)
90 TIGR02605 CxxC_CxxC_SSSS putat 64.8 2.7 5.9E-05 27.9 0.5 32 44-80 3-34 (52)
91 PF13289 SIR2_2: SIR2-like dom 62.6 5.8 0.00012 31.3 2.2 41 128-168 82-127 (143)
92 PF04016 DUF364: Domain of unk 61.4 5.9 0.00013 32.5 2.0 44 124-167 55-98 (147)
93 cd02759 MopB_Acetylene-hydrata 61.4 8.5 0.00018 37.4 3.5 51 127-177 156-211 (477)
94 cd02766 MopB_3 The MopB_3 CD i 61.0 8.1 0.00018 37.9 3.3 52 126-177 152-207 (501)
95 PRK00481 NAD-dependent deacety 60.9 7.3 0.00016 34.5 2.7 55 191-245 183-240 (242)
96 KOG3954|consensus 60.9 8.4 0.00018 35.1 3.0 59 131-193 274-334 (336)
97 PF02591 DUF164: Putative zinc 59.4 13 0.00028 25.2 3.1 38 36-79 16-53 (56)
98 PRK14138 NAD-dependent deacety 58.3 15 0.00032 32.8 4.2 56 191-246 184-242 (244)
99 cd02768 MopB_NADH-Q-OR-NuoG2 M 57.8 11 0.00023 35.3 3.4 51 127-178 144-198 (386)
100 cd02750 MopB_Nitrate-R-NarG-li 57.7 10 0.00022 36.7 3.4 52 126-177 165-220 (461)
101 cd02755 MopB_Thiosulfate-R-lik 56.4 11 0.00025 36.3 3.4 51 127-177 152-207 (454)
102 cd02068 radical_SAM_B12_BD B12 54.6 13 0.00028 29.2 2.9 64 130-193 38-111 (127)
103 PRK05333 NAD-dependent deacety 54.6 10 0.00022 34.5 2.6 57 192-248 221-280 (285)
104 PRK07586 hypothetical protein; 54.3 39 0.00084 33.1 6.8 20 123-142 254-273 (514)
105 COG3961 Pyruvate decarboxylase 54.2 12 0.00026 37.2 3.1 78 112-192 249-335 (557)
106 PF09538 FYDLN_acid: Protein o 53.3 7.7 0.00017 30.4 1.4 25 47-80 10-34 (108)
107 PRK04940 hypothetical protein; 52.8 13 0.00029 31.7 2.8 62 107-170 26-95 (180)
108 PTZ00408 NAD-dependent deacety 51.7 11 0.00023 33.7 2.2 56 191-246 178-236 (242)
109 cd02763 MopB_2 The MopB_2 CD i 51.3 19 0.00042 37.0 4.2 51 127-177 151-205 (679)
110 TIGR01701 Fdhalpha-like oxidor 51.1 16 0.00035 37.9 3.7 42 127-168 194-238 (743)
111 COG3383 Uncharacterized anaero 51.0 14 0.0003 38.4 3.1 67 126-192 415-489 (978)
112 TIGR00595 priA primosomal prot 50.6 53 0.0012 32.5 7.1 22 122-143 301-322 (505)
113 PRK14873 primosome assembly pr 50.2 32 0.00069 35.4 5.6 24 31-54 377-400 (665)
114 cd02765 MopB_4 The MopB_4 CD i 49.7 17 0.00038 36.2 3.6 52 126-177 154-209 (567)
115 PRK12474 hypothetical protein; 49.6 44 0.00096 32.9 6.4 19 125-143 260-278 (518)
116 cd02754 MopB_Nitrate-R-NapA-li 48.6 18 0.00039 35.9 3.5 51 127-177 153-209 (565)
117 PRK09939 putative oxidoreducta 48.2 15 0.00032 38.4 2.8 42 127-168 204-248 (759)
118 PRK00945 acetyl-CoA decarbonyl 48.1 33 0.00072 29.1 4.5 45 130-177 107-152 (171)
119 PRK00398 rpoP DNA-directed RNA 47.8 10 0.00022 24.6 1.1 28 45-80 2-29 (46)
120 smart00531 TFIIE Transcription 47.2 15 0.00033 30.0 2.3 32 46-79 99-130 (147)
121 KOG3035|consensus 46.7 13 0.00028 32.9 1.9 17 104-120 3-19 (245)
122 COG3364 Zn-ribbon containing p 46.6 11 0.00023 29.4 1.1 26 47-80 3-28 (112)
123 PRK06260 threonine synthase; V 46.2 9 0.0002 36.5 0.9 27 44-80 1-27 (397)
124 PF01475 FUR: Ferric uptake re 46.0 21 0.00045 27.7 2.8 45 5-58 46-92 (120)
125 PF14353 CpXC: CpXC protein 45.6 12 0.00025 29.8 1.3 17 41-57 33-49 (128)
126 cd02770 MopB_DmsA-EC This CD ( 45.1 21 0.00046 36.0 3.4 51 127-177 162-220 (617)
127 COG3091 SprT Zn-dependent meta 44.7 5.2 0.00011 33.3 -0.8 73 4-79 70-147 (156)
128 TIGR01591 Fdh-alpha formate de 44.5 23 0.00051 35.8 3.6 51 127-177 151-205 (671)
129 cd02760 MopB_Phenylacetyl-CoA- 43.9 22 0.00049 37.0 3.4 51 127-177 169-224 (760)
130 cd02762 MopB_1 The MopB_1 CD i 43.5 20 0.00044 35.4 2.9 50 127-176 152-211 (539)
131 cd02752 MopB_Formate-Dh-Na-lik 42.6 21 0.00045 36.6 2.9 50 127-176 165-219 (649)
132 cd02753 MopB_Formate-Dh-H Form 42.3 26 0.00056 34.2 3.5 51 127-177 152-206 (512)
133 cd00350 rubredoxin_like Rubred 41.9 19 0.00041 21.8 1.5 23 47-79 2-24 (33)
134 PRK05580 primosome assembly pr 41.7 56 0.0012 33.6 5.9 22 122-143 469-490 (679)
135 cd02751 MopB_DMSOR-like The Mo 41.0 31 0.00066 34.7 3.8 50 128-177 165-228 (609)
136 COG1579 Zn-ribbon protein, pos 40.5 22 0.00048 31.8 2.4 38 36-79 191-228 (239)
137 COG3357 Predicted transcriptio 40.2 8.3 0.00018 29.3 -0.3 27 45-79 57-83 (97)
138 cd02757 MopB_Arsenate-R This C 40.1 24 0.00052 34.9 2.8 65 128-192 159-232 (523)
139 cd02767 MopB_ydeP The MopB_yde 39.9 18 0.0004 36.3 2.0 42 127-168 159-203 (574)
140 TIGR01553 formate-DH-alph form 39.4 29 0.00063 37.4 3.5 51 127-177 217-271 (1009)
141 TIGR02166 dmsA_ynfE anaerobic 39.3 30 0.00065 36.0 3.5 51 127-177 210-269 (797)
142 TIGR02098 MJ0042_CXXC MJ0042 f 39.2 14 0.00031 22.7 0.7 30 46-79 2-32 (38)
143 TIGR03479 DMSO_red_II_alp DMSO 39.1 33 0.00072 36.5 3.9 60 126-185 219-284 (912)
144 cd00368 Molybdopterin-Binding 39.0 16 0.00034 33.8 1.3 50 127-176 152-205 (374)
145 TIGR00315 cdhB CO dehydrogenas 38.7 45 0.00098 28.0 3.9 48 125-177 91-144 (162)
146 TIGR00354 polC DNA polymerase, 38.4 13 0.00029 39.4 0.8 31 39-79 1000-1035(1095)
147 TIGR02300 FYDLN_acid conserved 38.0 17 0.00038 29.3 1.2 26 46-80 9-34 (129)
148 cd02758 MopB_Tetrathionate-Ra 37.9 29 0.00063 36.0 3.2 51 127-177 207-268 (735)
149 PF09845 DUF2072: Zn-ribbon co 37.5 16 0.00034 29.7 0.9 26 47-80 2-27 (131)
150 PRK07860 NADH dehydrogenase su 37.2 32 0.00068 36.1 3.3 43 127-169 372-418 (797)
151 PRK06266 transcription initiat 37.2 39 0.00084 28.7 3.3 31 42-79 113-143 (178)
152 COG1029 FwdB Formylmethanofura 36.9 39 0.00085 32.2 3.5 70 107-181 306-384 (429)
153 COG1198 PriA Primosomal protei 36.8 93 0.002 32.4 6.5 18 128-145 529-546 (730)
154 TIGR00373 conserved hypothetic 36.8 30 0.00065 28.8 2.5 36 37-79 100-135 (158)
155 PF01155 HypA: Hydrogenase exp 35.8 18 0.00038 28.4 0.9 34 37-80 61-94 (113)
156 PRK14990 anaerobic dimethyl su 35.8 41 0.0009 35.1 3.9 51 127-177 227-286 (814)
157 COG0243 BisC Anaerobic dehydro 35.3 50 0.0011 34.2 4.4 50 127-176 195-251 (765)
158 PRK04023 DNA polymerase II lar 35.2 16 0.00035 39.0 0.8 30 40-79 1026-1060(1121)
159 PLN02980 2-oxoglutarate decarb 34.8 40 0.00087 38.4 3.8 61 128-190 595-659 (1655)
160 COG1996 RPC10 DNA-directed RNA 34.8 21 0.00045 24.0 1.0 26 46-79 6-31 (49)
161 COG2331 Uncharacterized protei 34.4 16 0.00035 26.8 0.5 30 45-79 11-40 (82)
162 PRK15488 thiosulfate reductase 34.3 38 0.00082 35.0 3.3 51 127-177 192-248 (759)
163 cd07153 Fur_like Ferric uptake 34.2 76 0.0016 24.1 4.3 45 5-58 39-85 (116)
164 TIGR01973 NuoG NADH-quinone ox 34.1 24 0.00053 35.5 1.9 50 128-177 359-413 (603)
165 PRK14714 DNA polymerase II lar 33.9 17 0.00037 39.7 0.7 31 39-79 1241-1276(1337)
166 cd02774 MopB_Res-Cmplx1_Nad11- 33.5 56 0.0012 31.0 4.1 42 126-167 143-188 (366)
167 PRK12380 hydrogenase nickel in 32.9 19 0.00042 28.2 0.7 32 39-80 63-94 (113)
168 PRK00564 hypA hydrogenase nick 32.8 18 0.00039 28.6 0.5 28 44-80 69-96 (117)
169 PF13717 zinc_ribbon_4: zinc-r 32.5 23 0.00049 21.9 0.9 30 46-79 2-32 (36)
170 PF11789 zf-Nse: Zinc-finger o 32.2 40 0.00086 23.1 2.1 28 47-74 25-52 (57)
171 PF13719 zinc_ribbon_5: zinc-r 31.7 28 0.0006 21.6 1.1 30 46-79 2-32 (37)
172 PRK13532 nitrate reductase cat 31.5 56 0.0012 34.3 4.0 51 127-177 202-258 (830)
173 TIGR00509 bisC_fam molybdopter 30.9 53 0.0012 34.1 3.7 56 129-184 165-235 (770)
174 PRK09462 fur ferric uptake reg 30.8 81 0.0018 25.5 4.1 45 5-58 56-102 (148)
175 PF10081 Abhydrolase_9: Alpha/ 30.6 63 0.0014 29.7 3.7 45 106-150 107-155 (289)
176 TIGR02026 BchE magnesium-proto 30.4 49 0.0011 32.6 3.2 63 130-192 62-135 (497)
177 smart00659 RPOLCX RNA polymera 30.2 37 0.0008 22.1 1.6 24 47-79 3-26 (44)
178 cd00729 rubredoxin_SM Rubredox 29.7 53 0.0011 20.0 2.2 24 46-79 2-25 (34)
179 TIGR00100 hypA hydrogenase nic 29.5 24 0.00052 27.8 0.7 26 45-80 69-94 (115)
180 PF12172 DUF35_N: Rubredoxin-l 29.2 33 0.00072 21.0 1.2 26 42-79 7-32 (37)
181 PF13240 zinc_ribbon_2: zinc-r 28.8 28 0.00062 19.4 0.8 20 48-79 1-20 (23)
182 COG0761 lytB 4-Hydroxy-3-methy 28.7 48 0.001 30.6 2.6 42 124-166 205-247 (294)
183 TIGR03844 cysteate_syn cysteat 28.4 28 0.0006 33.4 1.1 24 45-79 1-24 (398)
184 PRK07591 threonine synthase; V 28.1 31 0.00067 33.3 1.4 27 43-80 15-41 (421)
185 cd02764 MopB_PHLH The MopB_PHL 28.0 81 0.0018 31.1 4.3 51 127-177 192-254 (524)
186 COG3925 N-terminal domain of t 27.8 36 0.00079 26.1 1.4 32 129-167 38-69 (103)
187 PRK03824 hypA hydrogenase nick 27.8 32 0.00069 27.9 1.2 15 45-59 69-83 (135)
188 PF05728 UPF0227: Uncharacteri 27.4 47 0.001 28.4 2.2 51 118-170 42-94 (187)
189 cd01412 SIRT5_Af1_CobB SIRT5_A 27.4 45 0.00097 29.0 2.2 51 191-241 170-223 (224)
190 cd02761 MopB_FmdB-FwdB The Mop 27.2 1.4E+02 0.003 28.1 5.6 48 130-177 130-189 (415)
191 PRK04016 DNA-directed RNA poly 27.0 56 0.0012 23.0 2.1 24 44-67 2-27 (62)
192 TIGR01706 NAPA periplasmic nit 26.8 78 0.0017 33.3 4.1 50 127-176 202-257 (830)
193 PF01194 RNA_pol_N: RNA polyme 26.6 41 0.00088 23.6 1.4 23 45-67 3-27 (60)
194 PRK09130 NADH dehydrogenase su 26.4 75 0.0016 32.8 3.9 43 127-169 360-406 (687)
195 PF05191 ADK_lid: Adenylate ki 26.2 42 0.00092 20.8 1.3 27 47-79 2-28 (36)
196 PRK03681 hypA hydrogenase nick 26.2 31 0.00068 27.1 0.9 26 46-80 70-95 (114)
197 PF10571 UPF0547: Uncharacteri 26.0 41 0.00088 19.4 1.1 20 48-79 2-21 (26)
198 PF13248 zf-ribbon_3: zinc-rib 26.0 26 0.00056 19.9 0.3 22 46-79 2-23 (26)
199 COG1644 RPB10 DNA-directed RNA 25.9 55 0.0012 23.1 1.9 25 44-68 2-28 (63)
200 PRK12496 hypothetical protein; 25.1 48 0.001 27.8 1.8 25 46-80 127-151 (164)
201 PF00384 Molybdopterin: Molybd 23.7 21 0.00046 33.6 -0.6 59 127-185 107-172 (432)
202 cd06267 PBP1_LacI_sugar_bindin 23.5 2.8E+02 0.0061 23.1 6.5 48 118-168 41-89 (264)
203 PF13913 zf-C2HC_2: zinc-finge 23.4 81 0.0018 17.7 2.0 17 47-63 3-19 (25)
204 cd02773 MopB_Res-Cmplx1_Nad11 23.3 62 0.0014 30.2 2.5 43 127-169 141-187 (375)
205 PRK08493 NADH dehydrogenase su 23.2 84 0.0018 33.2 3.5 67 127-193 366-443 (819)
206 COG1379 PHP family phosphoeste 23.0 21 0.00047 33.4 -0.7 34 39-79 239-272 (403)
207 PRK14991 tetrathionate reducta 22.9 48 0.001 35.9 1.7 58 128-185 282-353 (1031)
208 PF03604 DNA_RNApol_7kD: DNA d 22.8 63 0.0014 19.6 1.5 23 48-79 2-24 (32)
209 cd02769 MopB_DMSOR-BSOR-TMAOR 22.7 1.1E+02 0.0023 31.0 4.1 43 128-170 167-221 (609)
210 PF12647 RNHCP: RNHCP domain; 21.9 43 0.00093 25.5 0.8 56 46-114 4-59 (92)
211 cd02772 MopB_NDH-1_NuoG2 MopB_ 21.8 53 0.0011 31.0 1.7 44 126-169 147-193 (414)
212 PLN00032 DNA-directed RNA poly 21.7 82 0.0018 22.8 2.2 22 45-66 3-26 (71)
213 PF13692 Glyco_trans_1_4: Glyc 21.5 1.9E+02 0.0042 21.8 4.6 79 106-192 51-133 (135)
214 TIGR03129 one_C_dehyd_B formyl 21.4 2.1E+02 0.0046 26.7 5.7 50 128-177 133-195 (421)
215 PRK00048 dihydrodipicolinate r 20.6 1.9E+02 0.0042 25.7 4.9 111 107-249 60-173 (257)
No 1
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=7.8e-46 Score=328.51 Aligned_cols=161 Identities=56% Similarity=0.964 Sum_probs=147.9
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCC--CeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIE--NVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
+++|++|++|+++|++.++|||||||||+|||++ +|+|||||+++.+|+.|++.|+++.+...+....+|.|+ .|+
T Consensus 70 n~~H~~la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~--~Cg 147 (235)
T cd01408 70 SVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIFNQEVPKCP--RCG 147 (235)
T ss_pred CHHHHHHHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHhCCCCccCC--CCC
Confidence 6899999999999999999999999999999975 999999999999999999999988776665555579999 897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCC
Q psy12429 80 SSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVP 159 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~ 159 (268)
|.|||+||||||++|+..++++.+++++||++|||||||+|+|++.|+..+++|++
T Consensus 148 ------------------------g~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~ 203 (235)
T cd01408 148 ------------------------GLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVP 203 (235)
T ss_pred ------------------------CCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCc
Confidence 99999999999999998888888889999999999999999999999988778899
Q ss_pred EEEEeeccCCCC---cccchhcCCchHHHHHH
Q psy12429 160 QILINRERLSHL---NFDVELLGDGDVIIDTL 188 (268)
Q Consensus 160 ~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L 188 (268)
+|+||++++..+ .+|++|+|+|+++|++|
T Consensus 204 ~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 204 RVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred EEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 999999999864 58999999999999864
No 2
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.3e-45 Score=328.76 Aligned_cols=167 Identities=29% Similarity=0.447 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|+.|+++|++.+||||||||||++||.++|+|+|||+++.+|++|++.|+++++...+....+|.|+ .|+
T Consensus 75 n~~H~ala~L~~~g~~~~viTQNIDgLh~~aG~~~VielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~p~Cp--~Cg-- 150 (244)
T PRK14138 75 NLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGNVEEYYCVRCGKRYTVEDVIEKLEKSDVPRCD--DCS-- 150 (244)
T ss_pred CHHHHHHHHHHHcCCceEEEeecccChhhHcCCCeEEEccCCcCeeEECCCCCcccHHHHHHHHhcCCCCCCC--CCC--
Confidence 6799999999999999999999999999999999999999999999999999999988776554445689999 997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCCE
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVPQ 160 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~~ 160 (268)
|.+||+||||||++|...++.+.+++++||++|||||||+|+|++.|+..+ .+|+++
T Consensus 151 ----------------------g~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~ 208 (244)
T PRK14138 151 ----------------------GLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKL 208 (244)
T ss_pred ----------------------CeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeE
Confidence 899999999999999998888899999999999999999999999998764 689999
Q ss_pred EEEeeccCCCC-cccchhcCCchHHHHHHHHHhCC
Q psy12429 161 ILINRERLSHL-NFDVELLGDGDVIIDTLCRALGE 194 (268)
Q Consensus 161 i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~LG~ 194 (268)
++||+++|+.+ .+|+.|.|+++++|++|+..+|.
T Consensus 209 i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~~~ 243 (244)
T PRK14138 209 VIVNLGETPLDDIATLKYNMDVVEFANRVMSEGGI 243 (244)
T ss_pred EEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHhCC
Confidence 99999999976 48999999999999999998884
No 3
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.9e-45 Score=330.38 Aligned_cols=182 Identities=25% Similarity=0.356 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|++|+++|++.++|||||||||++||+++|+|||||+++.+|++|++.|+++++...+...+ |.+.+..++ .
T Consensus 74 n~~H~~la~L~~~g~~~~viTQNIDgLh~~aG~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 151 (260)
T cd01409 74 NAAHRALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALN-PGFAEQAAG-Q 151 (260)
T ss_pred CHHHHHHHHHHHcCCCeeEEeeccchhHHHcCCCCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcC-cchhhhhcc-c
Confidence 68999999999999999999999999999999999999999999999999999998877765432211 111100000 0
Q ss_pred CCCCCCCCCC--CCCCCCCCCC-CCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCC
Q psy12429 82 PTSSDISVPA--GESSSLPPTP-SRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPS 157 (268)
Q Consensus 82 ~~~~~~~~~~--~~~~~~~~~~-~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g 157 (268)
....+...+. ......|.|+ |+|.|||+||||||++|...++.+.+++++||++|||||||+|+|++.|+..+ .+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g 231 (260)
T cd01409 152 APDGDVDLEDEQVAGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAG 231 (260)
T ss_pred CCCcccccchhhcccCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCC
Confidence 0000000000 0011234454 66999999999999999988889999999999999999999999999999774 689
Q ss_pred CCEEEEeeccCCCC-cccchhcCCchHHH
Q psy12429 158 VPQILINRERLSHL-NFDVELLGDGDVII 185 (268)
Q Consensus 158 ~~~i~IN~~~t~~~-~~dl~i~g~aD~vl 185 (268)
+++|+||+++|+.+ .+|+.|.|+++++|
T Consensus 232 ~~viiIN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 232 LPIAIVNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred CcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence 99999999999976 48999999999874
No 4
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=3.5e-44 Score=331.08 Aligned_cols=175 Identities=39% Similarity=0.703 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
+++|++|+.|++.|++.++|||||||||++||+ ++|+|||||+++++|.+|++.|+++.....+....+|.|+ .|+
T Consensus 101 n~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~~~~~vP~C~--~Cg 178 (349)
T PTZ00410 101 TAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEARSGKVPHCS--TCG 178 (349)
T ss_pred CHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHhhcCCCCCCC--CCC
Confidence 689999999999999999999999999999997 4899999999999999999999877655444445689999 897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCC
Q psy12429 80 SSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVP 159 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~ 159 (268)
|.|||+||||||.+|+.+++ +.+++++||++|||||||+|+|++.|+..++++++
T Consensus 179 ------------------------G~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~p 233 (349)
T PTZ00410 179 ------------------------GIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVP 233 (349)
T ss_pred ------------------------CccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCC
Confidence 99999999999999998777 78889999999999999999999999987778899
Q ss_pred EEEEeeccCCCC--------------------------------------------------------cccchhcCCchH
Q psy12429 160 QILINRERLSHL--------------------------------------------------------NFDVELLGDGDV 183 (268)
Q Consensus 160 ~i~IN~~~t~~~--------------------------------------------------------~~dl~i~g~aD~ 183 (268)
+|+||++++... ..|+.+.|+||+
T Consensus 234 vviIN~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~~~~ 313 (349)
T PTZ00410 234 RVLFNLERVGGLMFRFPTDPLTTFHADSVAKEGRSSSSSSRSSSDSSTSSSSDGYGQFGDYEADPGGVCRDIFFPGDCQE 313 (349)
T ss_pred EEEECccccCCceeeccCCccccchhhhhhhcccCccccccccccccccccccccccccccccCccccccceeecccchH
Confidence 999999985421 135668999999
Q ss_pred HHHHHHHHhCCCcchhHHHhhh
Q psy12429 184 IIDTLCRALGESWTGTLLELYN 205 (268)
Q Consensus 184 vl~~L~~~LG~~w~~~~~~~~~ 205 (268)
-+..|++.|| |+.+|.++..
T Consensus 314 ~~~~~~~~lg--~~~~l~~~~~ 333 (349)
T PTZ00410 314 SVRRLAEALG--LGEALAKRVR 333 (349)
T ss_pred HHHHHHHHhC--cHHHHHHHHH
Confidence 9999999999 9999888754
No 5
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=3.4e-44 Score=318.78 Aligned_cols=166 Identities=39% Similarity=0.556 Sum_probs=151.4
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|++|+++|++.++|||||||||++||+++|+||||++.+.+|.+|+..+..++......+..+|.|+ .|+
T Consensus 78 n~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~--~Cg-- 153 (250)
T COG0846 78 NKAHYALAELEDKGKLLRIITQNIDGLHERAGSKNVIELHGSLKRVRCSKCGNQYYDEDVIKFIEDGLIPRCP--KCG-- 153 (250)
T ss_pred CHHHHHHHHHhhcCCceEEEecccchHHHHcCCCcEEEeccceeeeEeCCCcCccchhhhhhhcccCCCCcCc--cCC--
Confidence 6899999999999999999999999999999999999999999999999999998876654444445689999 998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-cccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCC
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRG-VMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVP 159 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g-~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~ 159 (268)
| .|||+||||||++|..+++.+.+++++||++||+|||++|+|++.++..+ .+|+.
T Consensus 154 ----------------------~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~ 211 (250)
T COG0846 154 ----------------------GPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAK 211 (250)
T ss_pred ----------------------CccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCE
Confidence 7 99999999999999999888888899999999999999999999988854 78999
Q ss_pred EEEEeeccCCCC-cccchhcCCchHHHHHHHHHhC
Q psy12429 160 QILINRERLSHL-NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 160 ~i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+++||.+++..+ .+|+.+.++++++++.|+..+.
T Consensus 212 ~i~iN~~~~~~~~~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 212 VIEINLEPTRLDPIADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred EEEECCCcccCcchhHHHHHhhHHHHHHHHHHHhh
Confidence 999999998865 6999999999999999987664
No 6
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.9e-43 Score=307.46 Aligned_cols=153 Identities=29% Similarity=0.412 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeCCCCceechHHHHHHHh-hCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVF-QQRIPLCPSPAC 78 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~~~~C 78 (268)
+++|++|++|+++|++.++|||||||||++||+ ++|+|+|||++..+|++|+..|..+++...+. ...+|.|+ .|
T Consensus 49 n~~H~~La~l~~~g~~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~p~C~--~C 126 (206)
T cd01410 49 TLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETGRRCH--AC 126 (206)
T ss_pred CHHHHHHHHHHHCCCCceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHhhcCCCCCcCC--CC
Confidence 689999999999999999999999999999997 58999999999999999999988777654442 23479999 89
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCC
Q psy12429 79 LSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPS 157 (268)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g 157 (268)
+ |.|||+||||||++|...++.+.+++++||++|||||||+|+|++.|+..+ .+|
T Consensus 127 g------------------------g~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g 182 (206)
T cd01410 127 G------------------------GILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAG 182 (206)
T ss_pred c------------------------CccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcC
Confidence 7 899999999999999988888888999999999999999999999999764 679
Q ss_pred CCEEEEeeccCCCC-cccchhcCC
Q psy12429 158 VPQILINRERLSHL-NFDVELLGD 180 (268)
Q Consensus 158 ~~~i~IN~~~t~~~-~~dl~i~g~ 180 (268)
+++|+||+++++.+ .+|+.|+|+
T Consensus 183 ~~vi~iN~~~~~~d~~~d~~~~~~ 206 (206)
T cd01410 183 GRLVIVNLQPTPKDKLADLVIHGD 206 (206)
T ss_pred CeEEEECCCCCCCCccccEEEeCC
Confidence 99999999999865 478887764
No 7
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=317.57 Aligned_cols=163 Identities=26% Similarity=0.412 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHH----HhhCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKAD----VFQQRIPLCPSPA 77 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~----~~~~~~p~C~~~~ 77 (268)
+++|++|++|+++|++.+||||||||||++||+++|+|||||++..+|++|++.+..+..... .....+|.|+
T Consensus 93 N~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs~~V~ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~--- 169 (271)
T PTZ00409 93 NPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFMHQLPPECP--- 169 (271)
T ss_pred CHHHHHHHHHHhcCCCcEEEeccccchHhHcCCCcEEEeccCcCcceeCCCCCCcccCHHHHhhhhhhccCCCCCCC---
Confidence 689999999999999999999999999999999999999999999999999988765432211 0111246675
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CC
Q psy12429 78 CLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PP 156 (268)
Q Consensus 78 C~~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~ 156 (268)
|+ |.|||+||||||++|+..++.+.+++++||++|||||||+|+|++.|+..+ .+
T Consensus 170 Cg------------------------g~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~ 225 (271)
T PTZ00409 170 CG------------------------GIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRK 225 (271)
T ss_pred CC------------------------CcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHc
Confidence 65 999999999999999998889999999999999999999999999999874 67
Q ss_pred CCCEEEEeeccCCCC--cccchhcCCchHHHHHHHHHh
Q psy12429 157 SVPQILINRERLSHL--NFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 157 g~~~i~IN~~~t~~~--~~dl~i~g~aD~vl~~L~~~L 192 (268)
|+++|+||+++|+.+ .+|+.|.|++++++. +.+.|
T Consensus 226 g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 226 KKKIVEVNISKTYITNRISDYHVRAKFSELAQ-ISDIL 262 (271)
T ss_pred CCCEEEECCCCCCCCCccccEEEECcHHHHHH-HHHHh
Confidence 999999999999864 479999999999985 43333
No 8
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=5.5e-43 Score=307.88 Aligned_cols=152 Identities=34% Similarity=0.591 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|++|+++|++.++|||||||||+|||.++|+|+|||+++++|++|++.|+++.+. .+....+|.|+ .|+
T Consensus 69 n~~H~~La~L~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~C~~~~~~~~~~-~~~~~~~p~C~--~Cg-- 143 (222)
T cd01413 69 NKAHYFLAELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYCVNCGSKYDLEEVK-YAKKHEVPRCP--KCG-- 143 (222)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeccchhhHHcCCCcEEEccCCcCcceECCCCCCcchhHHH-HhccCCCCcCC--CCC--
Confidence 6799999999999999999999999999999999999999999999999999999887663 22234579999 897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCCE
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVPQ 160 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~~ 160 (268)
|.|||+||||||.+|+..++.+.+++++||++|||||||+|+|++.|+..+ .+|+++
T Consensus 144 ----------------------g~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~ 201 (222)
T cd01413 144 ----------------------GIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKL 201 (222)
T ss_pred ----------------------CccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeE
Confidence 899999999999999998888999999999999999999999999999875 689999
Q ss_pred EEEeeccCCCC-cccchhcCC
Q psy12429 161 ILINRERLSHL-NFDVELLGD 180 (268)
Q Consensus 161 i~IN~~~t~~~-~~dl~i~g~ 180 (268)
|+||+++++.+ .+|+.|.|.
T Consensus 202 i~iN~~~~~~~~~~~~~i~~~ 222 (222)
T cd01413 202 VIVNADETPFDYIADLVIQDK 222 (222)
T ss_pred EEEcCCCCCCCcceeEEEeCC
Confidence 99999999876 488877763
No 9
>KOG2682|consensus
Probab=100.00 E-value=2.7e-43 Score=304.04 Aligned_cols=176 Identities=45% Similarity=0.822 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeC-CCCceechHHHHHHHhhCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCT-RCGHRVSAEAIKADVFQQRIPLCPSPAC 78 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~-~C~~~~~~~~~~~~~~~~~~p~C~~~~C 78 (268)
..+||||+.|+++|.+.++||||||+|++.||. +.++|.|||+...+|. .|++.|+.+++...+....+|+|+ .|
T Consensus 106 t~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~~~~vpkC~--vC 183 (314)
T KOG2682|consen 106 TITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIMSEVVPKCE--VC 183 (314)
T ss_pred hhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHHhccCCCCc--hh
Confidence 468999999999999999999999999999999 6999999999999999 599999999999999988899999 99
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCC
Q psy12429 79 LSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSV 158 (268)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~ 158 (268)
+ |++||+||||||++|.++++....+...+|++|||||||+|+|+++|+..+++.+
T Consensus 184 ~------------------------~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V~PFAsLpe~vp~~v 239 (314)
T KOG2682|consen 184 Q------------------------GLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQVQPFASLPEKVPLSV 239 (314)
T ss_pred h------------------------ccccccEEEecCCccHHHHHHHhhcccccceEEEeccceeeeecccchhhhhhcC
Confidence 7 9999999999999999999988889999999999999999999999999999999
Q ss_pred CEEEEeeccCCCC-----cccchhcCCchHHHHHHHHHhCCCcchhHHHhhh
Q psy12429 159 PQILINRERLSHL-----NFDVELLGDGDVIIDTLCRALGESWTGTLLELYN 205 (268)
Q Consensus 159 ~~i~IN~~~t~~~-----~~dl~i~g~aD~vl~~L~~~LG~~w~~~~~~~~~ 205 (268)
+.++||++..+.. ..|+.++|+||+.+..|++.|| |+.+++.+..
T Consensus 240 ~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLG--W~eele~lv~ 289 (314)
T KOG2682|consen 240 PRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLG--WKEELEDLVR 289 (314)
T ss_pred ceeEecccccCccccCcccccchhhccHHHHHHHHHHHhC--cHHHHHHHHH
Confidence 9999999998732 3789999999999999999999 9998887643
No 10
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.7e-42 Score=315.19 Aligned_cols=190 Identities=26% Similarity=0.352 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|++|+++|++.+||||||||||++||.++|+|+|||++.++|++|++.|.++++...+...+ |.++ ....
T Consensus 84 n~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~--~~~~- 159 (285)
T PRK05333 84 NAAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAAN-PEWL--ALEA- 159 (285)
T ss_pred CHHHHHHHHHHHcCCcccEEecccchhHHHcCCCCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcC-cchh--hhhc-
Confidence 68999999999999999999999999999999999999999999999999999988776654332111 1110 0000
Q ss_pred CCCCCCCCCCC----CCCCCCCCC-CCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-C
Q psy12429 82 PTSSDISVPAG----ESSSLPPTP-SRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-P 155 (268)
Q Consensus 82 ~~~~~~~~~~~----~~~~~~~~~-~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~ 155 (268)
....+..++.+ .....|.|+ |+|.|||+||||||.+|+..+..+.++++++|++|||||||.|+|++.|+..+ .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~iP~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~ 239 (285)
T PRK05333 160 APAPDGDADLEWAAFDHFRVPACPACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQ 239 (285)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHHHH
Confidence 00000000000 001123343 45999999999999999998888889999999999999999999999998774 6
Q ss_pred CCCCEEEEeeccCCCC-cccchhcCCchHHHHHHHHHhCCC
Q psy12429 156 PSVPQILINRERLSHL-NFDVELLGDGDVIIDTLCRALGES 195 (268)
Q Consensus 156 ~g~~~i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~LG~~ 195 (268)
+|+++|+||++++..+ .+|+.|.|+++++|+.|++.||++
T Consensus 240 ~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 240 QGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGLA 280 (285)
T ss_pred CCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 7889999999999875 589999999999999999999864
No 11
>KOG2684|consensus
Probab=100.00 E-value=2.6e-42 Score=318.30 Aligned_cols=186 Identities=55% Similarity=0.978 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCC--eEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~--vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
.++|.||+.|+++|+++++|||||||||++||... ++|||||++++.|++|+..++++.+.+.+.+.++|.|| .|.
T Consensus 157 s~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~~~~~vp~CP--~C~ 234 (412)
T KOG2684|consen 157 SAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDIRNQEVPVCP--DCE 234 (412)
T ss_pred chHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHHhcCcCccCc--ccc
Confidence 57999999999999999999999999999999966 99999999999999999999999888888999999999 997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCC
Q psy12429 80 SSPTSSDISVPAGESSSLPPTP--SRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPS 157 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~--~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g 157 (268)
.....+. +.+ +++. ..|.|||+||||||.+|+.++.........+|++|||||||+|+|++.+++.+++.
T Consensus 235 ~~~~~r~---~~g-----~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~~~~~~ 306 (412)
T KOG2684|consen 235 GKNEKRR---GAG-----KRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECDLLIVIGTSLKVRPVAEIVKSFPAK 306 (412)
T ss_pred ccccccc---Ccc-----ccccccCccccccceEEecCCCChHHHhhhhccccccceEEEeCCccccccHHHHHhhhccc
Confidence 4322211 111 1111 24799999999999999998877777778889999999999999999999999889
Q ss_pred CCEEEEeeccCCCCcccchhcCCchHHHHHHHHHhCCCcchh
Q psy12429 158 VPQILINRERLSHLNFDVELLGDGDVIIDTLCRALGESWTGT 199 (268)
Q Consensus 158 ~~~i~IN~~~t~~~~~dl~i~g~aD~vl~~L~~~LG~~w~~~ 199 (268)
.|.|.||.++.++..+|+.+.|+||++...++..+| |.-+
T Consensus 307 vpqIliNr~~v~h~efd~~ll~~CD~v~~~l~~~~g--~~~~ 346 (412)
T KOG2684|consen 307 VPQILINRDPVPHAEFDVELLGDCDDVIRLLCQKCG--WLKP 346 (412)
T ss_pred CcEEEecCccccccccChhhccchHHHHHHHHhhcc--ccch
Confidence 999999999999889999999999999999999998 4443
No 12
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=7.2e-42 Score=304.00 Aligned_cols=160 Identities=26% Similarity=0.371 Sum_probs=139.1
Q ss_pred CHHHHHHHHHHHc--CCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERH--GKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 2 ~~~H~~La~L~~~--g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
+.+|++|++|++. |++.++|||||||||++||+++|+|+|||++.++|++|++.|+++... ....|.|+ .|+
T Consensus 71 n~~H~~L~~Le~~~~~~~~~iiTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~----~~~~p~C~--~Cg 144 (242)
T PTZ00408 71 NKAHFALAKLEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGELLKVRCTATGHVFDWTEDV----VHGSSRCK--CCG 144 (242)
T ss_pred CHHHHHHHHHHHhhcCCcEEEEeecccchhhHcCCCcEEEecCccceEEECCCCcccCchhhh----hcCCCccc--cCC
Confidence 5799999999986 888999999999999999999999999999999999999988765422 12368999 886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCC-CCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCC
Q psy12429 80 SSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGE-GLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPS 157 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE-~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g 157 (268)
++|.+||+|||||| .+|.+.++ +++.+||++|||||||+|+|++.|+..+ .+|
T Consensus 145 ----------------------~~g~lrP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g 199 (242)
T PTZ00408 145 ----------------------CVGTLRPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYG 199 (242)
T ss_pred ----------------------CCCCCCCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHHHHHHHHHHcC
Confidence 34899999999999 77765443 4578999999999999999999999875 679
Q ss_pred CCEEEEeeccCCCC-cccchhcCCchHHHHHHHHHh
Q psy12429 158 VPQILINRERLSHL-NFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 158 ~~~i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~L 192 (268)
+++++||++++..+ .+|+.+.|++.++++.|++.+
T Consensus 200 ~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 200 ATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred CeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHHH
Confidence 99999999997754 588899999999999998765
No 13
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.8e-41 Score=301.81 Aligned_cols=161 Identities=36% Similarity=0.563 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|++|++.|++.++|||||||||++||.++|+|+|||++..+|++|++.|+++.+. ..+.|.|+ .|+
T Consensus 78 n~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~----~~~~p~C~--~Cg-- 149 (242)
T PRK00481 78 NAAHRALAELEKLGKLVTVITQNIDGLHERAGSKNVIELHGSLLRARCTKCGQTYDLDEYL----KPEPPRCP--KCG-- 149 (242)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeccchhHHHcCCCceeeccCCcCceeeCCCCCCcChhhhc----cCCCCCCC--CCC--
Confidence 6899999999999999999999999999999999999999999999999999988776543 23468899 897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCCE
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVPQ 160 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~~ 160 (268)
|.+||+||||||.+|+..+..+.++++++|++|||||||+|+|+++|+..+ .+|+++
T Consensus 150 ----------------------g~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~ 207 (242)
T PRK00481 150 ----------------------GILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKT 207 (242)
T ss_pred ----------------------CccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeE
Confidence 999999999999999988888888999999999999999999999999753 679999
Q ss_pred EEEeeccCCCC-cccchhcCCchHHHHHHHHHh
Q psy12429 161 ILINRERLSHL-NFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 161 i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~L 192 (268)
|+||++++..+ .+|+.|.|+++++++.|++.+
T Consensus 208 i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 208 VEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred EEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 99999998854 589999999999999998766
No 14
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=2e-41 Score=297.14 Aligned_cols=152 Identities=39% Similarity=0.680 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|++|+++|++.++|||||||||++||+++|+|+|||++.++|+.|++.+.++.+...+....+|.|+ .|+
T Consensus 65 n~~H~~L~~L~~~~~~~~viTQNiDgL~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~--~Cg-- 140 (218)
T cd01407 65 NPAHRALAELERKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCTKCGKEYPRDELQADIDREEVPRCP--KCG-- 140 (218)
T ss_pred CHHHHHHHHHHhcCCCeeEEEeccchhHHHcCCCCEEECcCCcCcceeCCCcCCCcHHHHhHhhccCCCCcCC--CCC--
Confidence 6899999999999999999999999999999999999999999999999999998877654444455689999 998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCCE
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVPQ 160 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~~ 160 (268)
|.|||+||||||++|+. ++.+.++++++|++|||||||+|+|+++|+..+ .+|+++
T Consensus 141 ----------------------~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~ 197 (218)
T cd01407 141 ----------------------GLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPV 197 (218)
T ss_pred ----------------------CccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeE
Confidence 89999999999999998 888888888999999999999999999999876 479999
Q ss_pred EEEeeccCCCC-cccchhcCC
Q psy12429 161 ILINRERLSHL-NFDVELLGD 180 (268)
Q Consensus 161 i~IN~~~t~~~-~~dl~i~g~ 180 (268)
|+||++++..+ .+|+.++|+
T Consensus 198 i~iN~~~~~~~~~~d~~~~~~ 218 (218)
T cd01407 198 VIINLEPTPADRKADLVILGD 218 (218)
T ss_pred EEECCCCCCCCccceEEEeCC
Confidence 99999999876 588888764
No 15
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=1.3e-40 Score=293.03 Aligned_cols=157 Identities=31% Similarity=0.458 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+.+|++|++|+++|++.++|||||||||++||+++|+|+|||++.++|..|+..+.++.. +....+|.|+ .|+
T Consensus 65 n~~H~~L~~L~~~~~~~~viTqNiDgL~~~aG~~~v~e~HG~~~~~~C~~C~~~~~~~~~---~~~~~~p~C~--~Cg-- 137 (224)
T cd01412 65 NPAHLALAELERRLPNVLLITQNVDGLHERAGSRNVIELHGSLFRVRCSSCGYVGENNEE---IPEEELPRCP--KCG-- 137 (224)
T ss_pred CHHHHHHHHHHhcCCCeEEEEccchHhhHHhCCCceEeeCCCcCccccCCCCCCCCcchh---hhccCCCCCC--CCC--
Confidence 579999999999999999999999999999999999999999999999999998766522 2234579999 997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCCE
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVPQ 160 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~~ 160 (268)
|.+||+||||||.+|+ .++.+.++++++|++|||||||+|.|+..|+..+ .+|+++
T Consensus 138 ----------------------g~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~ 194 (224)
T cd01412 138 ----------------------GLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARV 194 (224)
T ss_pred ----------------------CccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeE
Confidence 9999999999999999 7777888899999999999999999999999764 679999
Q ss_pred EEEeeccCCCC-cccchhcCCchHHHHHH
Q psy12429 161 ILINRERLSHL-NFDVELLGDGDVIIDTL 188 (268)
Q Consensus 161 i~IN~~~t~~~-~~dl~i~g~aD~vl~~L 188 (268)
|+||++++..+ .+|+.|.|+++++|++|
T Consensus 195 i~iN~~~~~~~~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 195 IEINPEPTPLSPIADFAFRGKAGEVLPAL 223 (224)
T ss_pred EEECCCCCCCCCcCCEEEECCHHHHHHHh
Confidence 99999999865 58999999999999886
No 16
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1e-40 Score=294.07 Aligned_cols=149 Identities=32% Similarity=0.443 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|++|++.| +.+||||||||||++||.++|+|+|||++..+|++|+..|+++.+. .+|.|+ .|+
T Consensus 75 n~~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~------~~p~C~--~Cg-- 143 (225)
T cd01411 75 NIIHQKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEEYL------KSPYHA--KCG-- 143 (225)
T ss_pred CHHHHHHHHHHHcC-CcEEEEeccchhhhhcCCCcEEEeCCCcCeeEeCCCCCccchhhcC------CCCCCC--CCC--
Confidence 58999999999998 8999999999999999999999999999999999999888765432 369999 897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEE
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQI 161 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i 161 (268)
|.|||+||||||.+|...++.+.++++++|++|||||||.|+|++.|+..+++|+++|
T Consensus 144 ----------------------g~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i 201 (225)
T cd01411 144 ----------------------GVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLI 201 (225)
T ss_pred ----------------------CEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEE
Confidence 9999999999999999888888889999999999999999999999987766799999
Q ss_pred EEeeccCCCC-cccchhcCCchHH
Q psy12429 162 LINRERLSHL-NFDVELLGDGDVI 184 (268)
Q Consensus 162 ~IN~~~t~~~-~~dl~i~g~aD~v 184 (268)
+||++++..+ .+|+.|.| ++++
T Consensus 202 ~iN~~~~~~~~~~~~~~~~-~~~~ 224 (225)
T cd01411 202 AINKEPTQLDSPATLVIKD-AVKV 224 (225)
T ss_pred EECCCCCCCCcchhehhcc-hhhh
Confidence 9999999865 58899999 8765
No 17
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=8.1e-39 Score=272.23 Aligned_cols=118 Identities=42% Similarity=0.693 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+.+|++|++|+++|++.++|||||||||++||+++|+|||||++.++|++|++.+..+.+...+.....|.|+ .|+
T Consensus 61 n~~H~~La~L~~~g~~~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~C~--~C~-- 136 (178)
T PF02146_consen 61 NPGHRALAELEKKGKLKRVITQNIDGLHQKAGSPKVIELHGSLFRLRCSKCGKEYDREDIVDSIDEEEPPRCP--KCG-- 136 (178)
T ss_dssp -HHHHHHHHHHHTTSEEEEEES-SSSHHHHTTESCEEETTEEEEEEEETTTSBEEEGHHHHHHHHTTSSCBCT--TTS--
T ss_pred ChhHHHHHHHHHhhhhccceecccchhhhcccchhhHHHHhhhceeeecCCCccccchhhccccccccccccc--ccC--
Confidence 6899999999999999999999999999999999999999999999999999999988877666667789999 998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccc
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRP 146 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p 146 (268)
|.|||+||||||++| ..+..+.+++++||++|||||||+|+|
T Consensus 137 ----------------------~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 137 ----------------------GLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp ----------------------CBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred ----------------------ccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 899999999999999 666677779999999999999999998
No 18
>KOG2683|consensus
Probab=100.00 E-value=1.2e-36 Score=262.62 Aligned_cols=185 Identities=21% Similarity=0.264 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCC--CCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSP--ACL 79 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~--~C~ 79 (268)
+++|+||+.||+.|++.++||||||+||.|||++.+.|||||...+.|+.|+...++..|+..+.-.+ |...+. .=+
T Consensus 113 n~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~N-P~fke~~~~~~ 191 (305)
T KOG2683|consen 113 NPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLN-PGFKEAIVSPG 191 (305)
T ss_pred CchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEecccCcccchHHHHHHHHhcC-cchhhhccCcc
Confidence 68999999999999999999999999999999999999999999999999999999999987664322 332210 112
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCC-CCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-C
Q psy12429 80 SSPTSSDISVPAGE--SSSLPPTP-SRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-P 155 (268)
Q Consensus 80 ~~~~~~~~~~~~~~--~~~~~~~~-~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~ 155 (268)
..++..|+.+|.+. .+..|.|. |+|.|||+|+||||.+|.+..+.+.+-+.+||-+||+||||.|++.++++..+ -
T Consensus 192 ~~~pDgDv~lpl~~e~gF~IPeC~~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~ 271 (305)
T KOG2683|consen 192 HQRPDGDVELPLEFEEGFQIPECEKCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHE 271 (305)
T ss_pred ccCCCCCeecchhhhhcccCCcccccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHHHHHh
Confidence 23445566666653 34556776 89999999999999999987777888899999999999999999999998875 5
Q ss_pred CCCCEEEEeeccCCCC-cccchhcCCchHHHHH
Q psy12429 156 PSVPQILINRERLSHL-NFDVELLGDGDVIIDT 187 (268)
Q Consensus 156 ~g~~~i~IN~~~t~~~-~~dl~i~g~aD~vl~~ 187 (268)
++.|+.+||..||..+ .+++.|...+.+++++
T Consensus 272 ~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~ 304 (305)
T KOG2683|consen 272 KKKPIAIVNIGPTRADDMATLKLNYRIGEVLKE 304 (305)
T ss_pred hcCcEEEEecCCcchhheeeeeecchHhhhhhc
Confidence 6889999999999976 4778888888888764
No 19
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=7.3e-36 Score=261.55 Aligned_cols=149 Identities=36% Similarity=0.606 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCC--CeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIE--NVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
+++|++|++|+++|++.++|||||||||++||.+ +|+++||++...+|+.|+..++++++... ...|.|+ .|+
T Consensus 67 ~~~H~~l~~l~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~---~~~p~C~--~C~ 141 (222)
T cd00296 67 NPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLER---EKPPRCP--KCG 141 (222)
T ss_pred CHHHHHHHHHHHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhc---cCCCCCC--CCC
Confidence 5799999999999999999999999999999997 99999999999999999998887665432 4579999 897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCC
Q psy12429 80 SSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSV 158 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~ 158 (268)
|.+||+|++|||.+|+..+..+.+.+.++|++|+|||||+|+|++.|+..+ ++++
T Consensus 142 ------------------------~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~ 197 (222)
T cd00296 142 ------------------------GLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLRAPERGA 197 (222)
T ss_pred ------------------------CcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCC
Confidence 899999999999999986777778888899999999999999999999875 5799
Q ss_pred CEEEEeeccCCCC---cccchhcC
Q psy12429 159 PQILINRERLSHL---NFDVELLG 179 (268)
Q Consensus 159 ~~i~IN~~~t~~~---~~dl~i~g 179 (268)
++++||++++..+ .+|+.+.|
T Consensus 198 ~~~~in~~~~~~~~~~~~~~~~~~ 221 (222)
T cd00296 198 PVVIINREPTPADALKKADLVILG 221 (222)
T ss_pred cEEEECCCCCCCCCCCcceEEEeC
Confidence 9999999999876 36666655
No 20
>KOG1905|consensus
Probab=100.00 E-value=1.3e-36 Score=269.85 Aligned_cols=174 Identities=22% Similarity=0.316 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 3 AFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 3 ~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
.+||+|.+|++.|++.+||||||||||.|+|+ +++.|||||||.+.|.+|...|-++.....+.- -+.-. +|..
T Consensus 103 ~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl--~at~R--~ct~ 178 (353)
T KOG1905|consen 103 VTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGL--KATGR--HCTG 178 (353)
T ss_pred chHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeeccc--ccccc--cccc
Confidence 58999999999999999999999999999999 699999999999999999998877654433211 01111 2321
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCccccccccccc-CCCCC
Q psy12429 81 SPTSSDISVPAGESSSLPPTP-SRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNS-LPPSV 158 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~-~~~g~ 158 (268)
. .-+.|+ |.|.||..+.-+...+|...++.+.++.++||++|++||||+|.|...++.. .++|+
T Consensus 179 ~--------------k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~ 244 (353)
T KOG1905|consen 179 R--------------KCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGG 244 (353)
T ss_pred c--------------ccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCc
Confidence 0 001122 4589999999999999999899999999999999999999999999999876 47899
Q ss_pred CEEEEeeccCCCC-cccchhcCCchHHHHHHHHHhCC
Q psy12429 159 PQILINRERLSHL-NFDVELLGDGDVIIDTLCRALGE 194 (268)
Q Consensus 159 ~~i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~LG~ 194 (268)
++++||+|+|+++ .+++.|+|++|.||..||..||.
T Consensus 245 K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~Lgv 281 (353)
T KOG1905|consen 245 KIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGV 281 (353)
T ss_pred eEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCC
Confidence 9999999999987 58999999999999999999983
No 21
>KOG2684|consensus
Probab=98.71 E-value=4e-09 Score=98.64 Aligned_cols=62 Identities=45% Similarity=0.695 Sum_probs=58.7
Q ss_pred HHHHHhCCCcch-hHHHhhhcCCCCCCceecccccccCCCcccccCCCchhHHHHHHHHhCCc
Q psy12429 187 TLCRALGESWTG-TLLELYNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCRALGES 248 (268)
Q Consensus 187 ~L~~~LG~~w~~-~~~~~~~~~~~~~pqil~n~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (268)
+|+..+|+|++| ++.++++.++..||||++|++++.|..||++++|+||+++..+|..+||.
T Consensus 282 DllIviGTSLKV~pV~~iv~~~~~~vpqIliNr~~v~h~efd~~ll~~CD~v~~~l~~~~g~~ 344 (412)
T KOG2684|consen 282 DLLIVIGTSLKVRPVAEIVKSFPAKVPQILINRDPVPHAEFDVELLGDCDDVIRLLCQKCGWL 344 (412)
T ss_pred ceEEEeCCccccccHHHHHhhhcccCcEEEecCccccccccChhhccchHHHHHHHHhhcccc
Confidence 677778999999 79999999999999999999999999999999999999999999999964
No 22
>KOG2682|consensus
Probab=98.18 E-value=2.9e-07 Score=80.85 Aligned_cols=62 Identities=35% Similarity=0.490 Sum_probs=55.1
Q ss_pred HHHHHhCCCcch-hHHHhhhcCCCCCCceecccccccCC----C-cccccCCCchhHHHHHHHHhCCc
Q psy12429 187 TLCRALGESWTG-TLLELYNSLPPSVPQILINRERLSHL----N-FDVELLGDGDVIIDTLCRALGES 248 (268)
Q Consensus 187 ~L~~~LG~~w~~-~~~~~~~~~~~~~pqil~n~e~~~~~----~-~~~~~~~~~~~~~~~~~~~l~~~ 248 (268)
+|+-.+|+|+.| |+.+++...|.++|++|||+|..+.+ . .|+..+||||..|..|+..|||+
T Consensus 214 dl~lV~GTSL~V~PFAsLpe~vp~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLGW~ 281 (314)
T KOG2682|consen 214 DLLLVMGTSLQVQPFASLPEKVPLSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLGWK 281 (314)
T ss_pred ceEEEeccceeeeecccchhhhhhcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhCcH
Confidence 444568999999 89999999999999999999998743 2 89999999999999999999954
No 23
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=96.98 E-value=0.0005 Score=64.45 Aligned_cols=58 Identities=31% Similarity=0.413 Sum_probs=47.9
Q ss_pred HhCCCcch-hHHHhhhcCCCCCCceecccccccCC---------------------------------------------
Q psy12429 191 ALGESWTG-TLLELYNSLPPSVPQILINRERLSHL--------------------------------------------- 224 (268)
Q Consensus 191 ~LG~~w~~-~~~~~~~~~~~~~pqil~n~e~~~~~--------------------------------------------- 224 (268)
.+|+|++| |...++...+..+|.++||++++...
T Consensus 211 VIGTSL~V~Paa~l~~~a~~~~pvviIN~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 290 (349)
T PTZ00410 211 IIGTSLQVHPFALLACVVPKDVPRVLFNLERVGGLMFRFPTDPLTTFHADSVAKEGRSSSSSSRSSSDSSTSSSSDGYGQ 290 (349)
T ss_pred EECcCCcccCHHHHHHHHhcCCCEEEECccccCCceeeccCCccccchhhhhhhcccCcccccccccccccccccccccc
Confidence 47999999 77777666666799999999887665
Q ss_pred -----------CcccccCCCchhHHHHHHHHhCCc
Q psy12429 225 -----------NFDVELLGDGDVIIDTLCRALGES 248 (268)
Q Consensus 225 -----------~~~~~~~~~~~~~~~~~~~~l~~~ 248 (268)
..|+.++||||+.+..|++.|||.
T Consensus 291 ~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~lg~~ 325 (349)
T PTZ00410 291 FGDYEADPGGVCRDIFFPGDCQESVRRLAEALGLG 325 (349)
T ss_pred ccccccCccccccceeecccchHHHHHHHHHhCcH
Confidence 246789999999999999999953
No 24
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=96.60 E-value=0.0044 Score=49.94 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=47.1
Q ss_pred HHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHH
Q psy12429 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTL 188 (268)
Q Consensus 124 ~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L 188 (268)
.+.+.+++||++|++||++.-.........+....++|.|+.++.... ..|+.+.|+...++.+|
T Consensus 70 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 70 AANEALEQADLVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHSSEEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 445677999999999999865444443223333348999999986643 36788999999888765
No 25
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=94.81 E-value=0.031 Score=49.45 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHcCC-cceeEecCccchHhhc
Q psy12429 2 YAFDAFIKMLERHGK-LLRNYSQNIDTLEQVA 32 (268)
Q Consensus 2 ~~~H~~La~L~~~g~-l~~viTQNIDgLh~~A 32 (268)
.+.|.+|+.|...|. ...+||.|.|.|-++|
T Consensus 81 ~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a 112 (242)
T cd01406 81 SPLHELLLRLFINNEGDVIIITTNYDRLLETA 112 (242)
T ss_pred CHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence 468999999988765 6689999999999865
No 26
>KOG1185|consensus
Probab=94.59 E-value=0.068 Score=52.01 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeecc--CCCC--cccchhcCCchHHHHHHH
Q psy12429 114 GEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRER--LSHL--NFDVELLGDGDVIIDTLC 189 (268)
Q Consensus 114 gE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~--t~~~--~~dl~i~g~aD~vl~~L~ 189 (268)
++.+|-...++-..++++||++|++||-|.-.--+.++-...+..+.|.||..+ .... +.|+.|.||...++..|.
T Consensus 259 ~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~ 338 (571)
T KOG1185|consen 259 PDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLV 338 (571)
T ss_pred CCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHH
Confidence 344555433333457899999999999987554444444455677777776554 3332 678999999999999999
Q ss_pred HHhCC
Q psy12429 190 RALGE 194 (268)
Q Consensus 190 ~~LG~ 194 (268)
+.|+.
T Consensus 339 e~l~~ 343 (571)
T KOG1185|consen 339 EELQD 343 (571)
T ss_pred HHhcC
Confidence 99975
No 27
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.29 E-value=0.086 Score=52.33 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=52.1
Q ss_pred cCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHH
Q psy12429 113 FGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLC 189 (268)
Q Consensus 113 FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~ 189 (268)
|.|.+|-..-......+++||++|++||++.-+....-...+..+.++|.|+.++... ...++.|.||+..++..|.
T Consensus 247 ~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~ 326 (554)
T TIGR03254 247 LPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALL 326 (554)
T ss_pred CCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHH
Confidence 4454443221223456889999999999987443321111123356788888776432 2467889999999999998
Q ss_pred HHh
Q psy12429 190 RAL 192 (268)
Q Consensus 190 ~~L 192 (268)
+.+
T Consensus 327 ~~l 329 (554)
T TIGR03254 327 SAA 329 (554)
T ss_pred HHh
Confidence 866
No 28
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.14 E-value=0.086 Score=52.53 Aligned_cols=69 Identities=17% Similarity=0.333 Sum_probs=49.7
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+...+.+||++|++||++.-.+..........+.++|.||.++.... ..|+.|.||+..++..|...+.
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 34567789999999999876654333222233567899988875432 3678899999999999988664
No 29
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=93.90 E-value=0.13 Score=51.25 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=51.9
Q ss_pred cCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHH
Q psy12429 113 FGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLC 189 (268)
Q Consensus 113 FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~ 189 (268)
|.|.+|-..=......+++||++|++||++.-.........+..+.++|.|+.++... ...++.+.||+..++..|.
T Consensus 254 ~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~ 333 (569)
T PRK09259 254 LPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALL 333 (569)
T ss_pred CCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHH
Confidence 4555554221222345789999999999985443221111223456788888776432 2467889999999999998
Q ss_pred HHhC
Q psy12429 190 RALG 193 (268)
Q Consensus 190 ~~LG 193 (268)
..+.
T Consensus 334 ~~l~ 337 (569)
T PRK09259 334 AGLK 337 (569)
T ss_pred HHhh
Confidence 7764
No 30
>PRK07524 hypothetical protein; Provisional
Probab=93.86 E-value=0.11 Score=51.24 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=50.0
Q ss_pred HHHHhhhcCCeEEEEccCCccccccc-ccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHHHHhC
Q psy12429 124 AMTLDKNRCDLLIVIGSSLKVRPVAL-IPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 124 ~~~~~~~~aDlllviGTSl~V~p~~~-l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+.+++||++|++||++....... ....+..++++|.||.++... ...++.|.||+..+++.|...+.
T Consensus 256 ~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 329 (535)
T PRK07524 256 AVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLP 329 (535)
T ss_pred HHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhcc
Confidence 34566789999999999986443221 111233456799999887542 24688999999999999988775
No 31
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.84 E-value=0.11 Score=51.98 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=50.3
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.-+....... ...+.++|.||.++.... ..|+.|.||+..++..|.+.+.
T Consensus 266 ~~~~~~~aD~vl~vG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (572)
T PRK08979 266 ANMAMHNADLIFGIGVRFDDRTTNNLEK-YCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLD 336 (572)
T ss_pred HHHHHHhCCEEEEEcCCCCccccCchhh-cCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhh
Confidence 4456789999999999987665433222 233567899998875422 3688999999999999988764
No 32
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.64 E-value=0.12 Score=51.49 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=50.1
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++..+....+.. ...+.++|.||.++.... ..|+.|.||+..++..|...+.
T Consensus 266 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06882 266 ANNAMHESDLILGIGVRFDDRTTNNLAK-YCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLE 336 (574)
T ss_pred HHHHHHhCCEEEEECCCCCccccCchhh-cCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhh
Confidence 3456789999999999987766543322 233567899988875422 3688899999999999987763
No 33
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.61 E-value=0.17 Score=51.03 Aligned_cols=68 Identities=25% Similarity=0.359 Sum_probs=49.6
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC--C-CcccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS--H-LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~--~-~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.......+.. +..+.++|.||.++.. . ...|+.|.||+..++..|...+.
T Consensus 291 ~~~~l~~aDlvL~lG~~l~~~~t~~~~~-~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 291 AVAALQRSDLLIALGARFDDRVTGKLDS-FAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred HHHHHHhCCEEEEECCCCCccccCChhh-cCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 4467789999999999987653322211 2345678999988743 2 24688999999999999987664
No 34
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.60 E-value=0.12 Score=51.55 Aligned_cols=68 Identities=15% Similarity=0.334 Sum_probs=50.3
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++..+....... ...++++|.||.++.... ..|+.|.||+..++..|...+.
T Consensus 266 ~~~~l~~aDlvl~vG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 266 ANMTMHNADVIFAVGVRFDDRTTNNLAK-YCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred HHHHHHhCCEEEEeCCCCcccccCChhh-cCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence 4457789999999999987665433222 223467999998876532 4688999999999999987664
No 35
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=93.58 E-value=0.14 Score=51.20 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=49.1
Q ss_pred HHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC--C-CcccchhcCCchHHHHHHHHHhC
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS--H-LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~--~-~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
...+.+||++|++||++.-.....+.. +.++.++|.||.++.. . ...++.|.+|+..++..|.+.+.
T Consensus 278 ~~~l~~aDlvL~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 278 NFAVSECDLLIALGARFDDRVTGKLDE-FACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred HHHHHhCCEEEEECCCCcccccCCHhH-cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 446789999999999987654332221 3345678999888753 2 23678999999999999988664
No 36
>PRK08322 acetolactate synthase; Reviewed
Probab=93.56 E-value=0.14 Score=50.71 Aligned_cols=67 Identities=21% Similarity=0.143 Sum_probs=49.7
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+...+++||++|++||++.-++...+. ...+.++|.||.++.... ..++.+.||+..++..|...+.
T Consensus 256 ~~~~l~~aDlil~lG~~l~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 256 VHCAIEHADLIINVGHDVIEKPPFFMN--PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred HHHHHHhCCEEEEECCCCccccccccC--CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence 345678999999999998765533221 234567899998875422 4678899999999999988764
No 37
>PRK05858 hypothetical protein; Provisional
Probab=93.49 E-value=0.16 Score=50.33 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=53.3
Q ss_pred cCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHH
Q psy12429 113 FGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLC 189 (268)
Q Consensus 113 FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~ 189 (268)
|-|.+|-..-..+.+.++++|++|++||++....... ....+.++|.|+.++... ...++.+.|++..++..|.
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~---~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~ 320 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFG---VFGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALA 320 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCccccccc---ccCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHH
Confidence 4444554332334567889999999999875432221 123346899999887442 2467889999999999998
Q ss_pred HHhC
Q psy12429 190 RALG 193 (268)
Q Consensus 190 ~~LG 193 (268)
+.+.
T Consensus 321 ~~l~ 324 (542)
T PRK05858 321 GAGG 324 (542)
T ss_pred Hhcc
Confidence 7764
No 38
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.39 E-value=0.14 Score=51.04 Aligned_cols=67 Identities=21% Similarity=0.363 Sum_probs=49.1
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHh
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~L 192 (268)
+.+.+.+||++|+|||++.-.....+.. +....++|.||.++.... ..|+.|.||+..++..|.+.+
T Consensus 263 ~~~~l~~aD~vl~lG~~l~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 332 (563)
T PRK08527 263 ANMAMSECDLLISLGARFDDRVTGKLSE-FAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEEL 332 (563)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCChhh-cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 3456789999999999987654333222 233467899998875422 367889999999999998866
No 39
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.35 E-value=0.14 Score=51.41 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=48.8
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHHHHh
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~~~L 192 (268)
+.+.+++||++|++||++..+.........+.+.++|.||.++... ...|+.+.||+..++..|...+
T Consensus 281 a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 351 (587)
T PRK06965 281 ANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQL 351 (587)
T ss_pred HHHHHHhCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 4456789999999999987654322111223346789998887542 1468899999999999998766
No 40
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.27 E-value=0.14 Score=51.34 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=48.6
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHh
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~L 192 (268)
+.+.+++||++|++||++.-....... ....+.++|.||.++.... ..|+.|.||+..++..|.+.+
T Consensus 263 a~~~l~~aD~iL~lG~~l~~~~t~~~~-~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 263 GNATLLESDFVFGIGNRWANRHTGSVD-VYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHhCCEEEEECCCCCccccCccc-ccCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 345678999999999998654433221 1334567899998875532 368899999999999998765
No 41
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.23 E-value=0.16 Score=50.73 Aligned_cols=77 Identities=26% Similarity=0.428 Sum_probs=55.6
Q ss_pred HHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC---CCcc
Q psy12429 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG---ESWT 197 (268)
Q Consensus 124 ~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG---~~w~ 197 (268)
.+...+.+||++|+|||.+.=+... +........ +|-|+.++.... ..|+.|.||+..++..|...+. .+|.
T Consensus 259 ~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~ 336 (550)
T COG0028 259 AANEALEEADLLLAVGARFDDRVTG-YSGFAPPAA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKPERAAWL 336 (550)
T ss_pred HHHHHhhcCCEEEEecCCCcccccc-hhhhCCcCC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhhcchHHH
Confidence 3456778999999999999855444 322333333 888888875432 4789999999999999999886 4577
Q ss_pred hhHHH
Q psy12429 198 GTLLE 202 (268)
Q Consensus 198 ~~~~~ 202 (268)
..+.+
T Consensus 337 ~~~~~ 341 (550)
T COG0028 337 EELLE 341 (550)
T ss_pred HHHHH
Confidence 76544
No 42
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.15 E-value=0.15 Score=51.33 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=49.1
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHHHHh
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~~~L 192 (268)
+.+.+.+||++|+|||++.......+.. +..+.++|.||.++... ...|+.|.||+..+++.|...+
T Consensus 284 ~~~~l~~aDlvL~vG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l 353 (616)
T PRK07418 284 ANFAVTECDLLIAVGARFDDRVTGKLDE-FASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERS 353 (616)
T ss_pred HHHHHHhCCEEEEEcCCCCccccCChhh-cCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhh
Confidence 4456789999999999986544332222 23456789998887542 2468899999999999998876
No 43
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.11 E-value=0.17 Score=50.82 Aligned_cols=68 Identities=19% Similarity=0.406 Sum_probs=49.5
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|+|||++.......... +..+.++|.||.++.... ..|+.|.||+..++..|.+.+.
T Consensus 274 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~-~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 344 (595)
T PRK09107 274 ANMAMHDCDVMLCVGARFDDRITGRLDA-FSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWK 344 (595)
T ss_pred HHHHHHhCCEEEEECCCCCccccCchhh-cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 3456789999999999986554332222 233567899998876532 4688999999999999988763
No 44
>PRK06154 hypothetical protein; Provisional
Probab=92.86 E-value=0.2 Score=49.99 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=48.2
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.-... ...++.+.++|.|+.++... ...++.|.||+..++..|.+.|.
T Consensus 274 ~~~~~~~aDlvL~lG~~l~~~~~---~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 342 (565)
T PRK06154 274 VAHFLREADVLFGIGCSLTRSYY---GLPMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELR 342 (565)
T ss_pred HHHHHHhCCEEEEECCCCccccc---CccCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhh
Confidence 44567899999999999875322 11234466788888877532 24678899999999999987663
No 45
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.78 E-value=0.2 Score=50.12 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=49.4
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++..+....... ...+.++|.||.++.... ..|+.|.||...++..|...++
T Consensus 274 ~~~~l~~aDlil~vG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 344 (570)
T PRK06725 274 ANMAVTECDLLLALGVRFDDRVTGKLEL-FSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSI 344 (570)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCcccc-cCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 3456789999999999987654332211 223457888988875532 3688899999999999988775
No 46
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.78 E-value=0.19 Score=49.86 Aligned_cols=77 Identities=22% Similarity=0.419 Sum_probs=52.7
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHHHHhC-CCcchhH
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLCRALG-ESWTGTL 200 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~~~LG-~~w~~~~ 200 (268)
+...+++||++|++||++.-.-...+.. ...+.++|.||.++... ...|+.|.||...++..|...+. ..|...+
T Consensus 256 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~~~~~~~~~~ 334 (548)
T PRK08978 256 ANLAVQECDLLIAVGARFDDRVTGKLNT-FAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPLNIDAWRQHC 334 (548)
T ss_pred HHHHHHhCCEEEEEcCCCCccccCCccc-cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhccchHHHHHH
Confidence 4456789999999999986543322211 33345789998887442 24688999999999999987664 2465554
Q ss_pred HH
Q psy12429 201 LE 202 (268)
Q Consensus 201 ~~ 202 (268)
.+
T Consensus 335 ~~ 336 (548)
T PRK08978 335 AQ 336 (548)
T ss_pred HH
Confidence 43
No 47
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.64 E-value=0.16 Score=50.77 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=46.5
Q ss_pred HHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC------CcccchhcCCchHHHHHHHHHhC
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH------LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~------~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.++++|++|++||++...+... ....++++|.||.++... ...|+.|.||+..++..|...+.
T Consensus 274 ~~~~~~aDlvl~lG~~l~~~~~~~---~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 274 RADLAEADLVLVVDSDVPWIPKKI---RPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred chhhhhCCEEEEeCCCCCCccccc---cCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 345689999999999975332211 123456788898876431 23588999999999999988774
No 48
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.59 E-value=0.21 Score=49.84 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=49.5
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.......... ...+.++|.||.++.... ..|+.|.||+..++..|...+.
T Consensus 266 ~~~~l~~aD~il~vG~~~~~~~~~~~~~-~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06466 266 ANMAMHHADVILAVGARFDDRVTNGPAK-FCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILK 336 (574)
T ss_pred HHHHHHhCCEEEEECCCCCccccCchhh-cCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 3456789999999999987665433222 233457899988875432 3688999999999999987663
No 49
>PLN02470 acetolactate synthase
Probab=92.50 E-value=0.23 Score=49.76 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=48.4
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.......... +....++|.|+.++.... ..|+.|.||...++..|.+.+.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~-~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 343 (585)
T PLN02470 273 ANYAVDSADLLLAFGVRFDDRVTGKLEA-FASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLE 343 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCChhh-cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 3456789999999999986654332222 223456888988875422 3578899999999999987664
No 50
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=92.44 E-value=0.24 Score=49.62 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=48.8
Q ss_pred HHHhhhcCCeEEEEccCCccccccc-cc-ccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVAL-IP-NSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~-l~-~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.-..... .. ....+++++|.|+.++... ...++.|.||+..++..|...+.
T Consensus 260 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 260 AMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLA 333 (588)
T ss_pred HHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 4456789999999999986432211 01 1234567899999877542 24678899999999999988774
No 51
>PRK08266 hypothetical protein; Provisional
Probab=92.14 E-value=0.25 Score=48.90 Aligned_cols=66 Identities=26% Similarity=0.242 Sum_probs=47.6
Q ss_pred HHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC--CcccchhcCCchHHHHHHHHHhC
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH--LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~--~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+.+||++|++||++... ..... ....+.++|.||.++... ...|+.|.||+..+++.|.+.+.
T Consensus 258 ~~~~~~aDlvl~lG~~~~~~-~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 258 YELWPQTDVVIGIGSRLELP-TFRWP-WRPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred HHHHHhCCEEEEeCCCcCcc-ccccc-ccCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence 45678999999999998766 22221 123456789988776432 24688899999999999988663
No 52
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.03 E-value=0.28 Score=48.78 Aligned_cols=67 Identities=22% Similarity=0.461 Sum_probs=48.9
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHh
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~L 192 (268)
+.+.+.+||++|++||++.-.....+.. ...+.++|.||.++.... ..|+.|.||+..++..|.+.+
T Consensus 261 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 330 (558)
T TIGR00118 261 ANLAVHECDLIIAVGARFDDRVTGNLAK-FAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKL 330 (558)
T ss_pred HHHHHHhCCEEEEECCCCCccccCchhh-cCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 3456789999999999986553322222 223567899998875421 368899999999999998877
No 53
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.02 E-value=0.35 Score=48.29 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC--CcccchhcCCchHHHHHHHHHhC
Q psy12429 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH--LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 124 ~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~--~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+.++++|++|++||.+.......+.. ...+.++|.||.++... ...++.|.||+..++..|...+.
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSL-YPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALR 347 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccc-cCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhh
Confidence 34567789999999999987665433321 23456789999887432 22368899999999999987663
No 54
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.96 E-value=0.27 Score=49.24 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=48.4
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHHHHh
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~~~L 192 (268)
+.+.+.+||++|++||++.-.....+. ....+.++|.|+.++... ...|+.|.+|+..++..|.+.+
T Consensus 264 ~~~~~~~aDlvl~lG~~~~~~~~~~~~-~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 333 (591)
T PRK11269 264 GNATLLASDFVLGIGNRWANRHTGSVE-VYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVA 333 (591)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCchh-hcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHh
Confidence 345678999999999998654432221 133456789999877552 2367889999999999998766
No 55
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=91.90 E-value=0.23 Score=49.15 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=48.3
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhCCCcch
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALGESWTG 198 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG~~w~~ 198 (268)
+.+.+++||++|++||++.-.........+. ..++|.||.++.... ..++.+ +|+..++.+|.+.++..|..
T Consensus 266 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~-~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~~~~~~ 340 (539)
T TIGR03393 266 VKEAIEGADAVICVGVRFTDTITAGFTHQLT-PEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAGLMWSS 340 (539)
T ss_pred HHHHHhhCCEEEEECCcccccccceeeccCC-cccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhccccccc
Confidence 4456789999999999986544322211122 246788888764321 245666 89999999999888766753
No 56
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=91.82 E-value=0.31 Score=48.67 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=48.2
Q ss_pred HHHhhhcCCeEEEEccCCcccccc-cc-cccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVA-LI-PNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~-~l-~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.-.... .. .....+++++|.|+.++.... ..++.|.||+..++..|++.+.
T Consensus 256 ~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 256 AMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred HHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 445678999999999998632211 01 112345678899988774422 3678899999999999988773
No 57
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=91.73 E-value=0.36 Score=47.74 Aligned_cols=67 Identities=21% Similarity=0.120 Sum_probs=48.0
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++|+++.-+....+. ...+.++|.||.++.... ..++.|.||...++..|.+.+.
T Consensus 256 ~~~~~~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (539)
T TIGR02418 256 GDRLLKQADLVITIGYDPIEYEPRNWN--SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIP 325 (539)
T ss_pred HHHHHHhCCEEEEecCcccccCccccC--cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhc
Confidence 345778999999999997644322211 222467899998886532 3678899999999999987663
No 58
>PRK08611 pyruvate oxidase; Provisional
Probab=91.61 E-value=0.35 Score=48.36 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=46.5
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.++++|++|++||++.... ....+.++|.||.++.... ..|+.|.||+..++..|.+.+.
T Consensus 261 a~~~l~~aDlvl~iG~~~~~~~------~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 261 AYEAMQEADLLIMVGTNYPYVD------YLPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK 326 (576)
T ss_pred HHHHHHhCCEEEEeCCCCCccc------cCCCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcc
Confidence 3456789999999999974322 1233467899988874422 3678899999999999988774
No 59
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.47 E-value=0.34 Score=48.27 Aligned_cols=68 Identities=19% Similarity=0.395 Sum_probs=48.8
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.-........ ...+.++|.||.++... ...|+.|.||+..++..|.+.+.
T Consensus 267 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 337 (561)
T PRK06048 267 ANYAIQESDLIIAVGARFDDRVTGKLAS-FAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQ 337 (561)
T ss_pred HHHHHHhCCEEEEECCCCCccccCChhh-cCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 3456789999999999986443322211 23456789998887542 24688999999999999988775
No 60
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=91.41 E-value=0.33 Score=48.57 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=45.2
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++... .+...++.+..+|.||.++.... ..++.|.||+..++..|...+.
T Consensus 258 ~~~~l~~aDlvl~vG~~~~~~---~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (575)
T TIGR02720 258 ANEALFQADLVLFVGNNYPFA---EVSKAFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVE 326 (575)
T ss_pred HHHHHHhCCEEEEeCCCCCcc---ccccccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 345678999999999997422 22112333344588887764322 3678899999999999987764
No 61
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=91.38 E-value=0.4 Score=48.01 Aligned_cols=69 Identities=25% Similarity=0.350 Sum_probs=48.7
Q ss_pred HHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 124 ~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+.+++||++|++||++.-........ ...+.++|.||.++.... ..++.|.||+..+|..|++.+.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 333 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISS-FAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELM 333 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCccc-cCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhh
Confidence 34456789999999999986443222211 234567888988875422 3678899999999999988764
No 62
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=91.38 E-value=0.38 Score=47.93 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=49.1
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+.+||++|++||++.......... +..+.++|.||.++.... ..|+.|.+|...++..|...+.
T Consensus 271 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (564)
T PRK08155 271 TNYILQEADLLIVLGARFDDRAIGKTEQ-FCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVE 341 (564)
T ss_pred HHHHHHhCCEEEEECCCCCccccCCHhh-cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhc
Confidence 3456789999999999987654332211 234567899998875432 4688899999999999987663
No 63
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.20 E-value=0.36 Score=48.16 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=48.4
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.-....... .+..+.++|.||.++.... ..|+.|.||+..++..|.+.+.
T Consensus 270 ~~~~~~~aD~vl~lG~~l~~~~~~~~~-~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 340 (566)
T PRK07282 270 ANIAMTEADFMINIGSRFDDRLTGNPK-TFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPT 340 (566)
T ss_pred HHHHHHhCCEEEEECCCCCccccCChh-hcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhc
Confidence 445778999999999998644322211 1223467899988875422 3578899999999999988764
No 64
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=91.16 E-value=0.47 Score=46.88 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=47.8
Q ss_pred HHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC--CcccchhcCCchHHHHHHHHHhC
Q psy12429 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH--LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 124 ~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~--~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+.+++||++|++||++--+........+..+.++|.||.++... ...++.|.|++..++..|.+.+.
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 265 KISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 34457889999999999753222111111233456788888877442 24678899999999999998775
No 65
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=90.53 E-value=0.44 Score=47.83 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=46.2
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++... .+.. ...++++|.|+.++.... ..|+.|.||+..++..|.+.+.
T Consensus 266 a~~~~~~aDlvl~lG~~~~~~---~~~~-~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (597)
T PRK08273 266 SYELMRECDTLLMVGSSFPYS---EFLP-KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLE 333 (597)
T ss_pred HHHHHHhCCEEEEeCCCCCHH---hcCC-CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 445678999999999997422 1111 122467888988874422 3678899999999999988775
No 66
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.48 E-value=0.45 Score=47.62 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=46.3
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|+|||++... . +..+.++|.||.++.... ..|+.|.||+..++..|.+.|+
T Consensus 259 ~~~~l~~aDlvl~lG~~~~~~---~----~~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 259 AHEAMHEADLLILLGTDFPYD---Q----FLPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred HHHHHHhCCEEEEEcCCCChh---h----cCCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence 345678999999999987421 1 123457899988875532 4678899999999999998875
No 67
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=90.36 E-value=0.49 Score=47.19 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=48.0
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+.+||++|++||++.-+....... +..+.++|.|+.++... ...|+.|.||...++..|.+.++
T Consensus 275 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~ 345 (571)
T PRK07710 275 ANMALYECDLLINIGARFDDRVTGNLAY-FAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEG 345 (571)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCchhh-cCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 3456789999999999986543322211 22345688888887532 24678899999999999987765
No 68
>PRK07064 hypothetical protein; Provisional
Probab=89.46 E-value=0.74 Score=45.51 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=48.1
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC---CcccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH---LNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~---~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+.+||++|++||++.-....... .....+++.||.++... ...++.+.+|+..++..|...+.
T Consensus 258 ~~~~~~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 327 (544)
T PRK07064 258 VEALYKTCDLLLVVGSRLRGNETLKYS--LALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLE 327 (544)
T ss_pred HHHHHHhCCEEEEecCCCCcccccccc--cCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhh
Confidence 455678999999999998755543221 11234788888876432 24688899999999999988764
No 69
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=89.41 E-value=0.65 Score=46.36 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=45.7
Q ss_pred HHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+++||++|++||++... . ....+.++|.||.++.... ..|+.|.||...++..|...+.
T Consensus 260 ~~~~~~aDlvl~lG~~~~~~---~---~~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 324 (574)
T PRK09124 260 YHAMMNCDTLLMLGTDFPYR---Q---FYPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLE 324 (574)
T ss_pred HHHHHhCCEEEEECCCCCcc---c---ccCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhh
Confidence 35678999999999987432 1 1233467899988875422 3688899999999999987663
No 70
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=89.07 E-value=0.44 Score=45.87 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=46.5
Q ss_pred HhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+ ++|++|++||.+.-.....+ ....+.++|.|+.++.... ..|+.|.||+..++..|...+.
T Consensus 271 ~~~-~aDlvl~lG~~~~~~~~~~~--~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~ 337 (432)
T TIGR00173 271 EEL-QPDLVIRFGGPPVSKRLRQW--LARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLK 337 (432)
T ss_pred hhC-CCCEEEEeCCCcchhHHHHH--HhCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccC
Confidence 345 89999999999855443333 1223567898988875532 3588899999999999987763
No 71
>PRK08617 acetolactate synthase; Reviewed
Probab=88.81 E-value=0.82 Score=45.37 Aligned_cols=66 Identities=21% Similarity=0.108 Sum_probs=46.5
Q ss_pred HHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+++||++|++||++.-+...... ...+.++|.|+.++.... ..++.|.||+..++..|...+.
T Consensus 263 ~~~~~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 331 (552)
T PRK08617 263 DELLKKADLVITIGYDPIEYEPRNWN--SEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD 331 (552)
T ss_pred HHHHHhCCEEEEecCccccccccccc--cCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhh
Confidence 45678999999999987533221111 122457899998875532 3678899999999999977653
No 72
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=88.76 E-value=0.77 Score=45.63 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=48.2
Q ss_pred HHHhhhcCCeEEEEccCCccccccccccc--CCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNS--LPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~--~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.-.+...+... .....++|.|+.++.... ..|+.|.||...+++.|.+.+.
T Consensus 264 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~ 337 (557)
T PRK08199 264 LAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEP 337 (557)
T ss_pred HHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhccc
Confidence 44567899999999999865554322111 123457888988874322 3678899999999999987543
No 73
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=87.58 E-value=0.58 Score=43.48 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=46.8
Q ss_pred cCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC--CCcccchhcCCchHHHHHHHHHh
Q psy12429 131 RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS--HLNFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 131 ~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~--~~~~dl~i~g~aD~vl~~L~~~L 192 (268)
++++.|.+|-|.+++-...+ +....+|-||.++-. +..+|+-|.||.-++++.|.+.+
T Consensus 251 ~P~lYiA~GISGAiQH~aGm----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l 310 (312)
T PRK11916 251 KSDLYLTLGISGQIQHMVGG----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQL 310 (312)
T ss_pred CccEEEEeccccHHHHHhhc----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHh
Confidence 57899999999988866553 333468999999865 45799999999999999998765
No 74
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=87.53 E-value=0.61 Score=43.34 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=47.2
Q ss_pred cCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC--CCcccchhcCCchHHHHHHHHHh
Q psy12429 131 RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS--HLNFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 131 ~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~--~~~~dl~i~g~aD~vl~~L~~~L 192 (268)
++++.|.+|-|.+|+-...+ +....+|-||.++-. +..+|+-|.||.-++++.|.+.+
T Consensus 252 ~P~lYiA~GISGaiQH~~Gm----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l 311 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVGA----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAAL 311 (313)
T ss_pred CccEEEEEccccHHHHHhhc----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHh
Confidence 57999999999998866553 333468999999864 45799999999999999998775
No 75
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=86.96 E-value=0.68 Score=43.80 Aligned_cols=59 Identities=22% Similarity=0.163 Sum_probs=48.2
Q ss_pred cCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC--CCcccchhcCCchHHHHHHHHHhC
Q psy12429 131 RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS--HLNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 131 ~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~--~~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
++++.|.+|-|.+++-...+ +....+|-||.++-. +..+|+-|.||.-++++.|.+.+.
T Consensus 293 ~P~lYIA~GISGAiQH~~Gm----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 293 APELYIAVGISGAIQHLAGM----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CCcEEEEEecchHHHHHhhc----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 67999999999998866553 333468999999865 457999999999999999988774
No 76
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=86.81 E-value=1.2 Score=43.55 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=49.8
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCCc-ccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLN-FDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~~-~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.....+||++|-|||-++=+-..+-..+-..+.+++.||-++....+ -.+.+.+|+-..+.+|...|+
T Consensus 289 AN~~A~~ADlVigiGTR~~DFTTgS~alF~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~ 358 (617)
T COG3962 289 ANRAAEEADLVIGIGTRLQDFTTGSKALFKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALG 358 (617)
T ss_pred HHhhhhhcCEEEEecccccccccccHHHhcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhc
Confidence 345677999999999999865544422222356788999999876433 335678999999999988875
No 77
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=86.69 E-value=0.81 Score=42.48 Aligned_cols=59 Identities=25% Similarity=0.233 Sum_probs=48.9
Q ss_pred cCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC--CCcccchhcCCchHHHHHHHHHhC
Q psy12429 131 RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS--HLNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 131 ~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~--~~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
++||-|.+|=|.+++-.+.+ +....+|-||.++.. +..+|+-|.||.-++++.|.+.|.
T Consensus 251 ~P~LYIA~GISGAiQHlaGm----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 251 APKLYIALGISGAIQHLAGM----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred cccEEEEEecccHHHHHhhc----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 68999999999999876553 233468999999865 457999999999999999998875
No 78
>PLN02573 pyruvate decarboxylase
Probab=82.53 E-value=3 Score=41.84 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=42.6
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC-cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL-NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++||++.-........ ...+.++|.||.++.... ..++.+. +...++..|.+.+.
T Consensus 285 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~-~~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l~ 352 (578)
T PLN02573 285 CAEIVESADAYLFAGPIFNDYSSVGYSL-LLKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRVK 352 (578)
T ss_pred HHHHHHhCCEEEEECCccCCcccccccc-cCCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHhh
Confidence 3456789999999999986554332211 224567898988875532 2334333 56777777776663
No 79
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=82.26 E-value=2.2 Score=42.34 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHH
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDT 187 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~ 187 (268)
+.+.+++||++|++||++.... ....+.++|.||.++.... ..|+.|.||+..++..
T Consensus 253 ~~~~l~~aDlvl~lG~~~~~~~------~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 312 (549)
T PRK06457 253 SIEAMDKADLLIMLGTSFPYVN------FLNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNI 312 (549)
T ss_pred HHHHHHhCCEEEEECCCCChhh------cCCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHH
Confidence 3456789999999999985322 1233567899988875432 4678899999999854
No 80
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=81.33 E-value=4.8 Score=39.18 Aligned_cols=86 Identities=22% Similarity=0.369 Sum_probs=54.5
Q ss_pred CcccCcEEEcCCCCCHHH---HHHHHHhhhcCCeEEEEccCCcccccccc-ccc-C-------CCCCCEEEEeeccCC--
Q psy12429 104 GVMKPDIVFFGEGLPDSF---HSAMTLDKNRCDLLIVIGSSLKVRPVALI-PNS-L-------PPSVPQILINRERLS-- 169 (268)
Q Consensus 104 g~lrP~Iv~FgE~~p~~~---~~~~~~~~~~aDlllviGTSl~V~p~~~l-~~~-~-------~~g~~~i~IN~~~t~-- 169 (268)
|.+ +|++=.-.+|.+. ++.+..+..++|+.||||..-.|.|+++= +.. + ..+++.++|....-.
T Consensus 353 GHM--NVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~G 430 (462)
T PRK09444 353 GHM--NVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTG 430 (462)
T ss_pred Ccc--eeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCC
Confidence 444 5555555578764 44455678899999999999999999853 111 0 123445555544422
Q ss_pred CC--c-------ccchhcCCchHHHHHHHHH
Q psy12429 170 HL--N-------FDVELLGDGDVIIDTLCRA 191 (268)
Q Consensus 170 ~~--~-------~dl~i~g~aD~vl~~L~~~ 191 (268)
+. . .-.-+.||+.+.+.++.+.
T Consensus 431 yAGv~NpLF~~~nt~MlfGDAK~~~~~l~~~ 461 (462)
T PRK09444 431 YAGVQNPLFFKENTQMLFGDAKASVDAILKA 461 (462)
T ss_pred cCCCCCcceecCCceEEeccHHHHHHHHHHh
Confidence 21 1 1123789999999988654
No 81
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=75.97 E-value=4.1 Score=40.41 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=39.8
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHh
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~L 192 (268)
+.+.+++||++|++||++.-+.... ......+.++|.|+.++.... ..|+.+ ++....+..|...+
T Consensus 262 ~~~~l~~aDliL~iG~~l~~~~~~~-~~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 262 LSRLVEESDGLLLLGVILSDTNFAV-SQRKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHhCCEEEEECCccccccccc-ccccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 4456789999999999987543211 111122457888876654321 246666 56666666665544
No 82
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=75.41 E-value=3.4 Score=41.12 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=40.4
Q ss_pred HHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHH
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDT 187 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~ 187 (268)
.+.+++||++|++||++.-.....+.. ....++|.|+.++.... ..++.|.++...++..
T Consensus 281 ~~~l~~aD~vl~vG~~l~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 281 AEELLQPDIVIQFGSPPTSKRLLQWLA--DCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhcCCCCEEEEeCCCCCchhHHHHHh--cCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 456789999999999985332222211 12237888988775432 3678889999888876
No 83
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=71.66 E-value=1.6 Score=27.37 Aligned_cols=31 Identities=23% Similarity=0.628 Sum_probs=20.0
Q ss_pred cceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 44 FATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 44 l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
++..+|..|++.|.... .+.......|| .||
T Consensus 3 ~Y~y~C~~Cg~~fe~~~---~~~~~~~~~CP--~Cg 33 (41)
T smart00834 3 IYEYRCEDCGHTFEVLQ---KISDDPLATCP--ECG 33 (41)
T ss_pred CEEEEcCCCCCEEEEEE---ecCCCCCCCCC--CCC
Confidence 35679999999775321 11113457899 998
No 84
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=69.94 E-value=8 Score=37.87 Aligned_cols=71 Identities=27% Similarity=0.354 Sum_probs=41.5
Q ss_pred HHHHHHhhhcCCeEEEEccCCcccccccc-ccc-C-------CCCCCEEEE-eeccC-CCC---c------ccchhcCCc
Q psy12429 122 HSAMTLDKNRCDLLIVIGSSLKVRPVALI-PNS-L-------PPSVPQILI-NRERL-SHL---N------FDVELLGDG 181 (268)
Q Consensus 122 ~~~~~~~~~~aDlllviGTSl~V~p~~~l-~~~-~-------~~g~~~i~I-N~~~t-~~~---~------~dl~i~g~a 181 (268)
++.+....+++|+.||||..-.|-|+++= +.. + ..+++.|+| ++.-- ++. + .-.-+.||+
T Consensus 373 mdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfGDA 452 (463)
T PF02233_consen 373 MDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFGDA 452 (463)
T ss_dssp HHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES-H
T ss_pred hhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCCCCcceecCCcEEEeccH
Confidence 56666788999999999999999998863 211 1 122334444 44432 221 1 112478999
Q ss_pred hHHHHHHHHHh
Q psy12429 182 DVIIDTLCRAL 192 (268)
Q Consensus 182 D~vl~~L~~~L 192 (268)
.+.+.++..++
T Consensus 453 k~~~~~l~~~~ 463 (463)
T PF02233_consen 453 KKTLEELVAEL 463 (463)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999887653
No 85
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=69.54 E-value=1.7 Score=27.98 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=20.5
Q ss_pred cceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 44 FATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 44 l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
++..+|.+||+.+..-. .+.+.....|| .||.
T Consensus 3 ~Yey~C~~Cg~~fe~~~---~~~~~~~~~CP--~Cg~ 34 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQ---SISEDDPVPCP--ECGS 34 (42)
T ss_pred CEEEEeCCCCCEEEEEE---EcCCCCCCcCC--CCCC
Confidence 46789999998764311 12223457899 9983
No 86
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=68.62 E-value=10 Score=36.14 Aligned_cols=84 Identities=20% Similarity=0.302 Sum_probs=53.7
Q ss_pred cEEEcCCCCCHHH---HHHHHHhhhcCCeEEEEccCCcccccccc--------cccCCCCCCEEEEeeccCCCC-----c
Q psy12429 109 DIVFFGEGLPDSF---HSAMTLDKNRCDLLIVIGSSLKVRPVALI--------PNSLPPSVPQILINRERLSHL-----N 172 (268)
Q Consensus 109 ~Iv~FgE~~p~~~---~~~~~~~~~~aDlllviGTSl~V~p~~~l--------~~~~~~g~~~i~IN~~~t~~~-----~ 172 (268)
+|++=.-.+|.+. ++.+.++..++|+++|||.--.|.|+++= |-.--.+++.++++...-... +
T Consensus 358 NVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~~D~SPI~GMPiLeV~KAk~viv~KRsM~sGyAGv~N 437 (463)
T COG1282 358 NVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQDDNSPIAGMPVLEVWKAKTVIVFKRSMNSGYAGVQN 437 (463)
T ss_pred hhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhccCCCCcCCCceeeeeccceEEEEeccccccccccCC
Confidence 4444444466653 45566778899999999999999998752 111013455666766653321 1
Q ss_pred ------ccchhcCCchHHHHHHHHHh
Q psy12429 173 ------FDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 173 ------~dl~i~g~aD~vl~~L~~~L 192 (268)
...-+.||+.+.+.++.+.+
T Consensus 438 ~LFy~d~T~MlFGDAKk~V~~i~k~l 463 (463)
T COG1282 438 PLFYKDNTMMLFGDAKKSVDEILKAL 463 (463)
T ss_pred cceeccCcEEEeccHHHHHHHHHhcC
Confidence 12347899999998887653
No 87
>PRK11032 hypothetical protein; Provisional
Probab=67.69 E-value=4.3 Score=34.09 Aligned_cols=28 Identities=29% Similarity=0.771 Sum_probs=20.4
Q ss_pred ceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
-.++|.+||+..... ....+|.|| .|+.
T Consensus 123 G~LvC~~Cg~~~~~~------~p~~i~pCp--~C~~ 150 (160)
T PRK11032 123 GNLVCEKCHHHLAFY------TPEVLPLCP--KCGH 150 (160)
T ss_pred ceEEecCCCCEEEec------CCCcCCCCC--CCCC
Confidence 357999999876432 135689999 9984
No 88
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=67.45 E-value=3.2 Score=34.28 Aligned_cols=28 Identities=39% Similarity=0.933 Sum_probs=20.3
Q ss_pred ceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
-..+|.+||+...... ...+|.|| .|+.
T Consensus 111 G~l~C~~Cg~~~~~~~------~~~l~~Cp--~C~~ 138 (146)
T PF07295_consen 111 GTLVCENCGHEVELTH------PERLPPCP--KCGH 138 (146)
T ss_pred ceEecccCCCEEEecC------CCcCCCCC--CCCC
Confidence 3578999998765422 24589999 9984
No 89
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=67.23 E-value=3.7 Score=36.39 Aligned_cols=51 Identities=43% Similarity=0.673 Sum_probs=38.7
Q ss_pred HhCCCcch-hHHHhhhcCCCCCCceecccccccCC---CcccccCCCchhHHHHH
Q psy12429 191 ALGESWTG-TLLELYNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTL 241 (268)
Q Consensus 191 ~LG~~w~~-~~~~~~~~~~~~~pqil~n~e~~~~~---~~~~~~~~~~~~~~~~~ 241 (268)
.+|+|+.+ |...++.......|-+.||.++.... .+|..+.|+|++++.+|
T Consensus 181 vvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 181 VIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred EECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 47999999 66666655555689999999875442 48888999999877653
No 90
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=64.81 E-value=2.7 Score=27.95 Aligned_cols=32 Identities=28% Similarity=0.672 Sum_probs=20.2
Q ss_pred cceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 44 FATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 44 l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
++..+|.+|+..|.... .+.+.....|| .||.
T Consensus 3 ~Yey~C~~Cg~~fe~~~---~~~~~~~~~CP--~Cg~ 34 (52)
T TIGR02605 3 IYEYRCTACGHRFEVLQ---KMSDDPLATCP--ECGG 34 (52)
T ss_pred CEEEEeCCCCCEeEEEE---ecCCCCCCCCC--CCCC
Confidence 35679999999775321 11122346799 9984
No 91
>PF13289 SIR2_2: SIR2-like domain
Probab=62.58 E-value=5.8 Score=31.27 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=24.3
Q ss_pred hhhcCCeEEEEccCCcccccccccccC--CC---CCCEEEEeeccC
Q psy12429 128 DKNRCDLLIVIGSSLKVRPVALIPNSL--PP---SVPQILINRERL 168 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~p~~~l~~~~--~~---g~~~i~IN~~~t 168 (268)
..-.+..+|+||.|+.=.....+...+ .. ..+.++|.+.+.
T Consensus 82 ~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~ 127 (143)
T PF13289_consen 82 SLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD 127 (143)
T ss_pred HHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc
Confidence 334677888899998755555554332 11 234566666554
No 92
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=61.41 E-value=5.9 Score=32.55 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeecc
Q psy12429 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRER 167 (268)
Q Consensus 124 ~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~ 167 (268)
.+.+.+.+||++++-|||+.=.....+....+++..++++.+.-
T Consensus 55 ~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 55 DAEEILPWADVVIITGSTLVNGTIDDILELARNAREVILYGPSA 98 (147)
T ss_dssp GHHHHGGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCCG
T ss_pred HHHHHHccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecCc
Confidence 44667899999999999998877777777766667777776654
No 93
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=61.36 E-value=8.5 Score=37.43 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=35.2
Q ss_pred HhhhcCCeEEEEccCCccccc----ccccccCCCCCCEEEEeeccCCCC-cccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPV----ALIPNSLPPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~----~~l~~~~~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
.++.+||++|++|+-....-. ..+.+...+|+++|.|++..+... .+|.+|
T Consensus 156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l 211 (477)
T cd02759 156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWL 211 (477)
T ss_pred hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeee
Confidence 456899999999998765422 222222357889999999987743 466654
No 94
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=61.00 E-value=8.1 Score=37.94 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=35.7
Q ss_pred HHhhhcCCeEEEEccCCccc-cc--ccccccCCCCCCEEEEeeccCCCC-cccchh
Q psy12429 126 TLDKNRCDLLIVIGSSLKVR-PV--ALIPNSLPPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~-p~--~~l~~~~~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
.+++.++|++|++|+..... |. ..+.+...+|+++|.|++..+... .+|.+|
T Consensus 152 ~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l 207 (501)
T cd02766 152 PEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHI 207 (501)
T ss_pred HHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeee
Confidence 34678999999999987652 31 122222367899999999987753 466544
No 95
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=60.87 E-value=7.3 Score=34.54 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=42.9
Q ss_pred HhCCCcch-hHHHhhh-cCCCCCCceeccccccc-CCCcccccCCCchhHHHHHHHHh
Q psy12429 191 ALGESWTG-TLLELYN-SLPPSVPQILINRERLS-HLNFDVELLGDGDVIIDTLCRAL 245 (268)
Q Consensus 191 ~LG~~w~~-~~~~~~~-~~~~~~pqil~n~e~~~-~~~~~~~~~~~~~~~~~~~~~~l 245 (268)
.+|++..+ |+..+.. ......|-+.||.++.. ...+++.+.|++++++.++++++
T Consensus 183 viGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 183 VIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred EECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 47999999 6666653 23467889999998754 33488999999999999998876
No 96
>KOG3954|consensus
Probab=60.85 E-value=8.4 Score=35.08 Aligned_cols=59 Identities=25% Similarity=0.229 Sum_probs=45.7
Q ss_pred cCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC--CCcccchhcCCchHHHHHHHHHhC
Q psy12429 131 RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS--HLNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 131 ~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~--~~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
...|.|.+|-|.+|+-.+.+ +....++-||.+|-. +..+|+-|.||-=+++++|-..|+
T Consensus 274 APeLYiAvGisGAIQHLAGm----KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 274 APELYIAVGISGAIQHLAGM----KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred ccceEEEEeccHHHHHhhcC----ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 35678888888888866553 334468899999855 356899999999999999987775
No 97
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=59.37 E-value=13 Score=25.21 Aligned_cols=38 Identities=21% Similarity=0.544 Sum_probs=27.8
Q ss_pred CeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 36 NVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 36 ~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
-+..+.|. .|..|+...+...+..-....++..|| +||
T Consensus 16 ~va~v~~~----~C~gC~~~l~~~~~~~i~~~~~i~~Cp--~Cg 53 (56)
T PF02591_consen 16 AVARVEGG----TCSGCHMELPPQELNEIRKGDEIVFCP--NCG 53 (56)
T ss_pred EEEEeeCC----ccCCCCEEcCHHHHHHHHcCCCeEECc--CCC
Confidence 46666665 799999998877765433334678999 997
No 98
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=58.30 E-value=15 Score=32.76 Aligned_cols=56 Identities=13% Similarity=-0.009 Sum_probs=41.1
Q ss_pred HhCCCcch-hHHHhhhc-CCCCCCceecccccccC-CCcccccCCCchhHHHHHHHHhC
Q psy12429 191 ALGESWTG-TLLELYNS-LPPSVPQILINRERLSH-LNFDVELLGDGDVIIDTLCRALG 246 (268)
Q Consensus 191 ~LG~~w~~-~~~~~~~~-~~~~~pqil~n~e~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 246 (268)
.+|+|+.+ |...++.. .....|-+.||.++-.. -.++..+.|+++++..++.+.+|
T Consensus 184 viGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~~ 242 (244)
T PRK14138 184 VMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEGG 242 (244)
T ss_pred EeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHhC
Confidence 36999999 66665432 23457888999864322 23788899999999999999887
No 99
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=57.77 E-value=11 Score=35.28 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=34.7
Q ss_pred HhhhcCCeEEEEccCCcc-cccc--cccccCC-CCCCEEEEeeccCCCCcccchhc
Q psy12429 127 LDKNRCDLLIVIGSSLKV-RPVA--LIPNSLP-PSVPQILINRERLSHLNFDVELL 178 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V-~p~~--~l~~~~~-~g~~~i~IN~~~t~~~~~dl~i~ 178 (268)
.++.++|++|++|+-... .|.. ++.+..+ +|++++.|++..+.. .+|.++.
T Consensus 144 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~-~ad~~~~ 198 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL-IADLTYP 198 (386)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc-ccceEEE
Confidence 456799999999998754 2321 2222223 489999999998776 6666544
No 100
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=57.68 E-value=10 Score=36.72 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=35.6
Q ss_pred HHhhhcCCeEEEEccCCccccc---ccccccCCCCCCEEEEeeccCCCC-cccchh
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPV---ALIPNSLPPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~---~~l~~~~~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
..++.+||++|++|+...+.-. ..+.+..++|+++|.|++..+... .+|.++
T Consensus 165 ~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l 220 (461)
T cd02750 165 SADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWV 220 (461)
T ss_pred hhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEe
Confidence 3457899999999998755421 122222257899999999987753 466654
No 101
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=56.42 E-value=11 Score=36.32 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=34.5
Q ss_pred HhhhcCCeEEEEccCCcccc----cccccccCCCCCCEEEEeeccCCCC-cccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVRP----VALIPNSLPPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p----~~~l~~~~~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
.++.+||++|++|+-..... +..+.+...+|+++|.|++..+... .+|.+|
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i 207 (454)
T cd02755 152 PDFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWI 207 (454)
T ss_pred cchhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEec
Confidence 35678999999999865442 1222222357889999999887742 466553
No 102
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=54.60 E-value=13 Score=29.18 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=37.2
Q ss_pred hcCCeEEEEccCCcccccccccccC---CCCCCEEEEeeccCC-------CCcccchhcCCchHHHHHHHHHhC
Q psy12429 130 NRCDLLIVIGSSLKVRPVALIPNSL---PPSVPQILINRERLS-------HLNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 130 ~~aDlllviGTSl~V~p~~~l~~~~---~~g~~~i~IN~~~t~-------~~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.++|++.+=..+.....+..+.+.+ ..++++++-....+. ...+|+.+.|+.+..+.+|++.+.
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 5777766654444444344443332 112333333333221 235899999999999999998764
No 103
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=54.58 E-value=10 Score=34.54 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=41.6
Q ss_pred hCCCcch-hHHHhhhc-CCCCCCceecccccccCCC-cccccCCCchhHHHHHHHHhCCc
Q psy12429 192 LGESWTG-TLLELYNS-LPPSVPQILINRERLSHLN-FDVELLGDGDVIIDTLCRALGES 248 (268)
Q Consensus 192 LG~~w~~-~~~~~~~~-~~~~~pqil~n~e~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 248 (268)
+|+|..+ +...++.. .....+.+.||.++...-. +++.+.|+|++++.+|.++||-+
T Consensus 221 vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 221 VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGLA 280 (285)
T ss_pred ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 6999999 43333322 2335689999987654433 78889999999999999999843
No 104
>PRK07586 hypothetical protein; Validated
Probab=54.30 E-value=39 Score=33.15 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=16.1
Q ss_pred HHHHHhhhcCCeEEEEccCC
Q psy12429 123 SAMTLDKNRCDLLIVIGSSL 142 (268)
Q Consensus 123 ~~~~~~~~~aDlllviGTSl 142 (268)
..+.+.+++||++|++||++
T Consensus 254 ~~~~~~~~~aDlvl~vG~~~ 273 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAKA 273 (514)
T ss_pred HHHHHHHhcCCEEEEECCCC
Confidence 33455788999999999996
No 105
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=54.17 E-value=12 Score=37.18 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=47.8
Q ss_pred EcCCCCCHHH--------HHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCCcccchhc-CCch
Q psy12429 112 FFGEGLPDSF--------HSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDVELL-GDGD 182 (268)
Q Consensus 112 ~FgE~~p~~~--------~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~~~dl~i~-g~aD 182 (268)
+|+|+.|... ...+.+.++.||++|.+|+-|.=+....+-...+. ..+|.++.....-... ... -.-.
T Consensus 249 ~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~-~~~i~~~~~~v~I~~~--~f~~l~m~ 325 (557)
T COG3961 249 VIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKP-ANIIEIHPDSVKIKDA--VFTNLSMK 325 (557)
T ss_pred cccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCc-ccEEEeccCeeEeccc--ccCCeeHH
Confidence 5778777531 23456788999999999999987766666544432 4677777766442111 111 1224
Q ss_pred HHHHHHHHHh
Q psy12429 183 VIIDTLCRAL 192 (268)
Q Consensus 183 ~vl~~L~~~L 192 (268)
.+|.+|.+.+
T Consensus 326 ~~L~~L~~~i 335 (557)
T COG3961 326 DALQELAKKI 335 (557)
T ss_pred HHHHHHHHHh
Confidence 4566665555
No 106
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=53.26 E-value=7.7 Score=30.40 Aligned_cols=25 Identities=28% Similarity=0.837 Sum_probs=16.3
Q ss_pred eeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 47 ASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 47 ~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
-.|.+||++|. .+ +..+-.|| .||.
T Consensus 10 R~Cp~CG~kFY------DL-nk~PivCP--~CG~ 34 (108)
T PF09538_consen 10 RTCPSCGAKFY------DL-NKDPIVCP--KCGT 34 (108)
T ss_pred ccCCCCcchhc------cC-CCCCccCC--CCCC
Confidence 46999998752 12 23334599 9984
No 107
>PRK04940 hypothetical protein; Provisional
Probab=52.79 E-value=13 Score=31.74 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=37.0
Q ss_pred cCcEEE--cCCCCCHHHHHHHHHhhhc----C--CeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC
Q psy12429 107 KPDIVF--FGEGLPDSFHSAMTLDKNR----C--DLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH 170 (268)
Q Consensus 107 rP~Iv~--FgE~~p~~~~~~~~~~~~~----a--DlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~ 170 (268)
.|++.+ +....|...++.+.+.+.+ . +-+++|||||-=+=|..|.. ..|.+-|+||+--.+.
T Consensus 26 ~p~~~~~~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La~--~~g~~aVLiNPAv~P~ 95 (180)
T PRK04940 26 DPDVRLISYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIGF--LCGIRQVIFNPNLFPE 95 (180)
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHHH--HHCCCEEEECCCCChH
Confidence 566654 3333455555544443331 1 45789999996544444433 3577899999987774
No 108
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=51.73 E-value=11 Score=33.70 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=41.6
Q ss_pred HhCCCcch-hHHHhhhc-CCCCCCceecccccccC-CCcccccCCCchhHHHHHHHHhC
Q psy12429 191 ALGESWTG-TLLELYNS-LPPSVPQILINRERLSH-LNFDVELLGDGDVIIDTLCRALG 246 (268)
Q Consensus 191 ~LG~~w~~-~~~~~~~~-~~~~~pqil~n~e~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 246 (268)
.+|+|+.| +..+++.. .....+-+.||.++... -.++..+.|++.+++.++++++.
T Consensus 178 viGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~~~ 236 (242)
T PTZ00408 178 AVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRVL 236 (242)
T ss_pred EEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHHHH
Confidence 47999999 66666543 33457889999887332 23777888999999999988773
No 109
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=51.34 E-value=19 Score=37.02 Aligned_cols=51 Identities=16% Similarity=0.078 Sum_probs=33.1
Q ss_pred HhhhcCCeEEEEccCCcc--cccc-cccccCCCCCCEEEEeeccCCCC-cccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKV--RPVA-LIPNSLPPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V--~p~~-~l~~~~~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
.++.+||++|++|+.... .|+. .+.....+|+++|.||+..+... .+|.+|
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl 205 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWV 205 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeec
Confidence 467899999999985432 1222 22222357899999999987742 455543
No 110
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=51.10 E-value=16 Score=37.87 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=29.0
Q ss_pred HhhhcCCeEEEEccCCcccccccc--ccc-CCCCCCEEEEeeccC
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVALI--PNS-LPPSVPQILINRERL 168 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~~l--~~~-~~~g~~~i~IN~~~t 168 (268)
+++.+||++|++|+-....-...+ .+. .++|+++|.||+..+
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~ 238 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRE 238 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 467899999999998654321111 122 368999999999654
No 111
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=51.00 E-value=14 Score=38.44 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=43.9
Q ss_pred HHhhhcCCeEEEEccCCc-ccccc--cccccCC-CCCCEEEEeeccCCCC-cccchhc---CCchHHHHHHHHHh
Q psy12429 126 TLDKNRCDLLIVIGSSLK-VRPVA--LIPNSLP-PSVPQILINRERLSHL-NFDVELL---GDGDVIIDTLCRAL 192 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~-V~p~~--~l~~~~~-~g~~~i~IN~~~t~~~-~~dl~i~---g~aD~vl~~L~~~L 192 (268)
.+++..+|++|+|||.-+ -+|+. ++.+..+ +|.++|.+.+.++... .+|++++ |.--.++..+++.+
T Consensus 415 i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd~a~l~Avakyi 489 (978)
T COG3383 415 IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTDLAWLTAVAKYI 489 (978)
T ss_pred HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCccHHHHHHHHHHH
Confidence 356789999999999854 33432 2323334 7999999999987743 6777765 44444555555544
No 112
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.63 E-value=53 Score=32.48 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=14.2
Q ss_pred HHHHHHhhhcCCeEEEEccCCc
Q psy12429 122 HSAMTLDKNRCDLLIVIGSSLK 143 (268)
Q Consensus 122 ~~~~~~~~~~aDlllviGTSl~ 143 (268)
++.+.+.+.+-+.=|+|||.+.
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCccc
Confidence 3445555666666677899874
No 113
>PRK14873 primosome assembly protein PriA; Provisional
Probab=50.24 E-value=32 Score=35.38 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=14.1
Q ss_pred hcCCCCeEeeccccceeeeCCCCc
Q psy12429 31 VAGIENVIECHGSFATASCTRCGH 54 (268)
Q Consensus 31 ~AG~~~vielHG~l~~~~C~~C~~ 54 (268)
|-|....+.++-.-+..+|.+|+-
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~ 400 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTG 400 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCC
Confidence 445555666666666666666654
No 114
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=49.73 E-value=17 Score=36.24 Aligned_cols=52 Identities=12% Similarity=0.015 Sum_probs=35.6
Q ss_pred HHhhhcCCeEEEEccCCccccccc--cccc-CCCCCCEEEEeeccCCC-Ccccchh
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVAL--IPNS-LPPSVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~--l~~~-~~~g~~~i~IN~~~t~~-~~~dl~i 177 (268)
..++.+||++|++|+.....-... .... .++|+++|.|++..+.. ..+|.+|
T Consensus 154 ~~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l 209 (567)
T cd02765 154 ITDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWV 209 (567)
T ss_pred HhHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEe
Confidence 345789999999999975442211 1222 35789999999998775 3566654
No 115
>PRK12474 hypothetical protein; Provisional
Probab=49.62 E-value=44 Score=32.85 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=15.6
Q ss_pred HHHhhhcCCeEEEEccCCc
Q psy12429 125 MTLDKNRCDLLIVIGSSLK 143 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~ 143 (268)
+.+.+++||++|++||++.
T Consensus 260 ~~~~~~~aDlvl~lG~~~~ 278 (518)
T PRK12474 260 ITAFLKDVEQLVLVGAKPP 278 (518)
T ss_pred HHHHHhhCCEEEEECCCCC
Confidence 3457889999999999963
No 116
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=48.60 E-value=18 Score=35.89 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=33.7
Q ss_pred HhhhcCCeEEEEccCCccccc---ccccccCCC--CCCEEEEeeccCCCC-cccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPV---ALIPNSLPP--SVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~---~~l~~~~~~--g~~~i~IN~~~t~~~-~~dl~i 177 (268)
.++.++|++|++|+-....-. ..+.+...+ |+++|.|++..+... .+|.+|
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l 209 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHL 209 (565)
T ss_pred HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeee
Confidence 456799999999999754321 112222244 899999999987743 456543
No 117
>PRK09939 putative oxidoreductase; Provisional
Probab=48.20 E-value=15 Score=38.40 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=28.8
Q ss_pred HhhhcCCeEEEEccCCccc-cc-c-cccccCCCCCCEEEEeeccC
Q psy12429 127 LDKNRCDLLIVIGSSLKVR-PV-A-LIPNSLPPSVPQILINRERL 168 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~-p~-~-~l~~~~~~g~~~i~IN~~~t 168 (268)
+++.+||++|++|+-.... |. . .|....++|+++|.||+..+
T Consensus 204 ~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 204 EDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred HHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 4578999999999986542 21 1 11122367999999999663
No 118
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=48.15 E-value=33 Score=29.09 Aligned_cols=45 Identities=29% Similarity=0.295 Sum_probs=26.0
Q ss_pred hcCCeEEEEccCCccccccc-ccccCCCCCCEEEEeeccCCCCcccchh
Q psy12429 130 NRCDLLIVIGSSLKVRPVAL-IPNSLPPSVPQILINRERLSHLNFDVEL 177 (268)
Q Consensus 130 ~~aDlllviGTSl~V~p~~~-l~~~~~~g~~~i~IN~~~t~~~~~dl~i 177 (268)
.++|++|++|++. |... .....++-.++..|.+....+-++|+.+
T Consensus 107 ~~~DlvlfvG~~~---~~~~~~l~~lk~f~~~~~~~~~~~y~~~a~~s~ 152 (171)
T PRK00945 107 GNYDLVIFIGVTY---YYASQGLSALKHFSPLKTITIDRYYHPNADMSF 152 (171)
T ss_pred CCcCEEEEecCCc---hhHHHHHHHHhhcCCceEEEecCCcCCCCceec
Confidence 7899999999996 4333 2222333333444555444444566654
No 119
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=47.79 E-value=10 Score=24.62 Aligned_cols=28 Identities=32% Similarity=0.630 Sum_probs=19.1
Q ss_pred ceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
...+|.+||..+..+.. .....|| .||.
T Consensus 2 ~~y~C~~CG~~~~~~~~------~~~~~Cp--~CG~ 29 (46)
T PRK00398 2 AEYKCARCGREVELDEY------GTGVRCP--YCGY 29 (46)
T ss_pred CEEECCCCCCEEEECCC------CCceECC--CCCC
Confidence 45789999998754321 1146899 9983
No 120
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=47.21 E-value=15 Score=30.03 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=20.1
Q ss_pred eeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
...|+.|+..|...+..........-.|| .||
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp--~Cg 130 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDMDGTFTCP--RCG 130 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCCCCcEECC--CCC
Confidence 56799999998865543211111126798 897
No 121
>KOG3035|consensus
Probab=46.69 E-value=13 Score=32.93 Aligned_cols=17 Identities=41% Similarity=0.905 Sum_probs=14.6
Q ss_pred CcccCcEEEcCCCCCHH
Q psy12429 104 GVMKPDIVFFGEGLPDS 120 (268)
Q Consensus 104 g~lrP~Iv~FgE~~p~~ 120 (268)
|.+||.||+||+++-..
T Consensus 3 g~~rp~i~LFGdSItq~ 19 (245)
T KOG3035|consen 3 GPMRPRIVLFGDSITQF 19 (245)
T ss_pred CcccccEEEecchhhhh
Confidence 67999999999998653
No 122
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=46.65 E-value=11 Score=29.35 Aligned_cols=26 Identities=31% Similarity=0.819 Sum_probs=17.1
Q ss_pred eeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 47 ASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 47 ~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
.+|++||+.|+.. ...+. .-|| .||.
T Consensus 3 H~CtrCG~vf~~g--~~~il----~GCp--~CG~ 28 (112)
T COG3364 3 HQCTRCGEVFDDG--SEEIL----SGCP--KCGC 28 (112)
T ss_pred ceecccccccccc--cHHHH----ccCc--cccc
Confidence 4799999998652 12222 3488 8983
No 123
>PRK06260 threonine synthase; Validated
Probab=46.24 E-value=9 Score=36.52 Aligned_cols=27 Identities=30% Similarity=0.714 Sum_probs=19.5
Q ss_pred cceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 44 FATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 44 l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
|+.++|..|++.|+.+.+ ...|| .|+.
T Consensus 1 ~~~~~C~~cg~~~~~~~~--------~~~Cp--~cg~ 27 (397)
T PRK06260 1 MYWLKCIECGKEYDPDEI--------IYTCP--ECGG 27 (397)
T ss_pred CCEEEECCCCCCCCCCCc--------cccCC--CCCC
Confidence 457899999999864322 25798 8973
No 124
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.96 E-value=21 Score=27.72 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCcceeEecCccchHhhcCCCCeEee--ccccceeeeCCCCceech
Q psy12429 5 DAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIEC--HGSFATASCTRCGHRVSA 58 (268)
Q Consensus 5 H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~viel--HG~l~~~~C~~C~~~~~~ 58 (268)
-+.|..|++.|.+..+.+. |+ ...+++ +..-..+.|..||+.++.
T Consensus 46 YR~L~~L~e~Gli~~~~~~--~~-------~~~Y~~~~~~~h~h~iC~~Cg~v~~~ 92 (120)
T PF01475_consen 46 YRTLDLLEEAGLIRKIEFG--DG-------ESRYELSTCHHHHHFICTQCGKVIDL 92 (120)
T ss_dssp HHHHHHHHHTTSEEEEEET--TS-------EEEEEESSSSSCEEEEETTTS-EEEE
T ss_pred HHHHHHHHHCCeEEEEEcC--CC-------cceEeecCCCcceEEEECCCCCEEEe
Confidence 4678889999988776544 22 233444 345566899999987654
No 125
>PF14353 CpXC: CpXC protein
Probab=45.57 E-value=12 Score=29.77 Aligned_cols=17 Identities=35% Similarity=0.935 Sum_probs=14.9
Q ss_pred ccccceeeeCCCCceec
Q psy12429 41 HGSFATASCTRCGHRVS 57 (268)
Q Consensus 41 HG~l~~~~C~~C~~~~~ 57 (268)
=|+++...|++||+.+.
T Consensus 33 ~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 33 DGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCcCEEECCCCCCcee
Confidence 69999999999998753
No 126
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=45.11 E-value=21 Score=36.01 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=35.1
Q ss_pred HhhhcCCeEEEEccCCccccc------ccccccCCCCCCEEEEeeccCCCC--cccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPV------ALIPNSLPPSVPQILINRERLSHL--NFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~------~~l~~~~~~g~~~i~IN~~~t~~~--~~dl~i 177 (268)
.++.+||++|+.|+-..+... ..+.....+|+++|.|++..+... .+|.+|
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i 220 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWI 220 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEE
Confidence 456789999999998654422 122122357899999999987753 477654
No 127
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=44.74 E-value=5.2 Score=33.26 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=45.2
Q ss_pred HHHHHHHHHH----cCCcceeEecCccchHhhcCC-CCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCC
Q psy12429 4 FDAFIKMLER----HGKLLRNYSQNIDTLEQVAGI-ENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPAC 78 (268)
Q Consensus 4 ~H~~La~L~~----~g~l~~viTQNIDgLh~~AG~-~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C 78 (268)
+|+-+-..-. +|+-...+-|.||||--..-. -.+-.+-|+-+..+|. |++.|.+-.-...+..++.-.|. .|
T Consensus 70 aHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~~~~~~v~~~~~~Y~C~-C~q~~l~~RRhn~~~~g~~YrC~--~C 146 (156)
T COG3091 70 AHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQFEVQSVRRTTYPYRCQ-CQQHYLRIRRHNTVRRGEVYRCG--KC 146 (156)
T ss_pred HHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccchHHHhhccccceeEEee-cCCccchhhhcccccccceEEec--cC
Confidence 5665555443 266667888899998765432 2344556788889999 99876442211122223356788 88
Q ss_pred C
Q psy12429 79 L 79 (268)
Q Consensus 79 ~ 79 (268)
+
T Consensus 147 ~ 147 (156)
T COG3091 147 G 147 (156)
T ss_pred C
Confidence 7
No 128
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=44.55 E-value=23 Score=35.84 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=33.5
Q ss_pred HhhhcCCeEEEEccCCccccc---ccccccCCCCCCEEEEeeccCCCC-cccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPV---ALIPNSLPPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~---~~l~~~~~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
.++.+||++|++|+.....-. ..+....++|+++|.|++..+... .+|.+|
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i 205 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHI 205 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCccc
Confidence 457889999999997654321 112122357899999999887642 355543
No 129
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=43.88 E-value=22 Score=37.01 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=34.7
Q ss_pred HhhhcCCeEEEEccCCccc--c--cccccccCCCCCCEEEEeeccCCCC-cccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVR--P--VALIPNSLPPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~--p--~~~l~~~~~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
.++.+||++|++|+-.... | +..+.....+|+++|.|++..+... .+|.+|
T Consensus 169 ~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wl 224 (760)
T cd02760 169 ADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWV 224 (760)
T ss_pred chHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEe
Confidence 4578999999999997543 1 1112222257899999999987753 467654
No 130
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=43.54 E-value=20 Score=35.43 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=33.7
Q ss_pred HhhhcCCeEEEEccCCccccccc--------cccc-CCCCCCEEEEeeccCCC-Ccccch
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVAL--------IPNS-LPPSVPQILINRERLSH-LNFDVE 176 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~~--------l~~~-~~~g~~~i~IN~~~t~~-~~~dl~ 176 (268)
.++.+||++|++|+-........ .... .++|+++|.|++..+.. ..+|.+
T Consensus 152 ~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~ 211 (539)
T cd02762 152 PDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEH 211 (539)
T ss_pred hhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEe
Confidence 45789999999999866542111 1222 25788999999998774 245554
No 131
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=42.58 E-value=21 Score=36.61 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=33.7
Q ss_pred HhhhcCCeEEEEccCCcc-cccc--cccccCC-CCCCEEEEeeccCCCC-cccch
Q psy12429 127 LDKNRCDLLIVIGSSLKV-RPVA--LIPNSLP-PSVPQILINRERLSHL-NFDVE 176 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V-~p~~--~l~~~~~-~g~~~i~IN~~~t~~~-~~dl~ 176 (268)
.++++||++|++|+-... +|.. .+.+... +|+++|.|.+..+... .+|++
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~ 219 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLY 219 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEe
Confidence 457889999999998763 3421 2222223 4899999999987743 45654
No 132
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=42.31 E-value=26 Score=34.22 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=34.3
Q ss_pred HhhhcCCeEEEEccCCcccc-c--ccccccCCCCCCEEEEeeccCCCC-cccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVRP-V--ALIPNSLPPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p-~--~~l~~~~~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
.++.++|++|++|+...... . ..+.+...+|+++|.|++..+... .+|.+|
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l 206 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHL 206 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeee
Confidence 45679999999999865432 1 112222367899999999887642 466654
No 133
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.86 E-value=19 Score=21.76 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=16.7
Q ss_pred eeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 47 ASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 47 ~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
.+|..||..|+.+. ....|| .|+
T Consensus 2 ~~C~~CGy~y~~~~--------~~~~CP--~Cg 24 (33)
T cd00350 2 YVCPVCGYIYDGEE--------APWVCP--VCG 24 (33)
T ss_pred EECCCCCCEECCCc--------CCCcCc--CCC
Confidence 47999999875321 245899 997
No 134
>PRK05580 primosome assembly protein PriA; Validated
Probab=41.66 E-value=56 Score=33.59 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=13.0
Q ss_pred HHHHHHhhhcCCeEEEEccCCc
Q psy12429 122 HSAMTLDKNRCDLLIVIGSSLK 143 (268)
Q Consensus 122 ~~~~~~~~~~aDlllviGTSl~ 143 (268)
.+.+.+.+.+-+.=|+|||.+.
T Consensus 469 ~~~~l~~f~~g~~~ILVgT~~i 490 (679)
T PRK05580 469 LEQLLAQFARGEADILIGTQML 490 (679)
T ss_pred HHHHHHHHhcCCCCEEEEChhh
Confidence 3444455555555566888864
No 135
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.02 E-value=31 Score=34.74 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=33.1
Q ss_pred hhh-cCCeEEEEccCCccc-cc----------ccccccCCCCCCEEEEeeccCCCC--cccchh
Q psy12429 128 DKN-RCDLLIVIGSSLKVR-PV----------ALIPNSLPPSVPQILINRERLSHL--NFDVEL 177 (268)
Q Consensus 128 ~~~-~aDlllviGTSl~V~-p~----------~~l~~~~~~g~~~i~IN~~~t~~~--~~dl~i 177 (268)
++. +||++|+.|+..... |. ..+.+...+|+++|.|++..+... .+|.+|
T Consensus 165 D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l 228 (609)
T cd02751 165 DIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWI 228 (609)
T ss_pred hHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEE
Confidence 445 599999999875433 21 122222357899999999987653 467654
No 136
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.54 E-value=22 Score=31.79 Aligned_cols=38 Identities=21% Similarity=0.549 Sum_probs=28.0
Q ss_pred CeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 36 NVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 36 ~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
-|+.+-|. +|..|+...+...+..-.....+..|| .||
T Consensus 191 gvvpl~g~----~C~GC~m~l~~~~~~~V~~~d~iv~CP--~Cg 228 (239)
T COG1579 191 GVVPLEGR----VCGGCHMKLPSQTLSKVRKKDEIVFCP--YCG 228 (239)
T ss_pred eEEeecCC----cccCCeeeecHHHHHHHhcCCCCccCC--ccc
Confidence 46666665 599999988877665444455688999 998
No 137
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=40.24 E-value=8.3 Score=29.28 Aligned_cols=27 Identities=33% Similarity=0.862 Sum_probs=18.9
Q ss_pred ceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
.-.+|-+||..|..+.+. .+.+|| .|.
T Consensus 57 ~Pa~CkkCGfef~~~~ik------~pSRCP--~CK 83 (97)
T COG3357 57 RPARCKKCGFEFRDDKIK------KPSRCP--KCK 83 (97)
T ss_pred cChhhcccCccccccccC------CcccCC--cch
Confidence 346899999887654332 246899 997
No 138
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=40.14 E-value=24 Score=34.92 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=40.1
Q ss_pred hhhcCCeEEEEccCCccc--cc---ccccccCCCCCCEEEEeeccCCCC-cccchhc---CCchHHHHHHHHHh
Q psy12429 128 DKNRCDLLIVIGSSLKVR--PV---ALIPNSLPPSVPQILINRERLSHL-NFDVELL---GDGDVIIDTLCRAL 192 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~--p~---~~l~~~~~~g~~~i~IN~~~t~~~-~~dl~i~---g~aD~vl~~L~~~L 192 (268)
++.+||++|++|+..... +. .++.....+|+++|.|++..+... .+|.+|. |.=..++..|+..|
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~i~PGtD~al~lama~~i 232 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLPIKPGEDGALALAIAHVI 232 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeCCCCCcHHHHHHHHHHHH
Confidence 568999999999886432 21 122222357899999999987642 4676542 33333444444444
No 139
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=39.93 E-value=18 Score=36.33 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=28.9
Q ss_pred HhhhcCCeEEEEccCCcccccccc--ccc-CCCCCCEEEEeeccC
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVALI--PNS-LPPSVPQILINRERL 168 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~~l--~~~-~~~g~~~i~IN~~~t 168 (268)
+++.+||++|++|+-........+ .+. .++|+++|.||+..+
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 467899999999997543321111 122 367999999999764
No 140
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=39.38 E-value=29 Score=37.42 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=34.4
Q ss_pred HhhhcCCeEEEEccCCccc-cc--ccccccCCCCCCEEEEeeccCCC-Ccccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVR-PV--ALIPNSLPPSVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~-p~--~~l~~~~~~g~~~i~IN~~~t~~-~~~dl~i 177 (268)
.++.+||++|++|+-.... |. ..+.+...+|+++|.|++..+.. ..+|+++
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l 271 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYA 271 (1009)
T ss_pred HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEe
Confidence 4577899999999986533 32 12222235789999999988774 3566653
No 141
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=39.31 E-value=30 Score=35.95 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=35.7
Q ss_pred HhhhcCCeEEEEccCCccccc------ccccccC-CCCCCEEEEeeccCCC--Ccccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPV------ALIPNSL-PPSVPQILINRERLSH--LNFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~------~~l~~~~-~~g~~~i~IN~~~t~~--~~~dl~i 177 (268)
.++.+||++|++|+.....-. ..+.+.+ .+|+++|.|++..+.. ..+|.+|
T Consensus 210 ~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l 269 (797)
T TIGR02166 210 DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWI 269 (797)
T ss_pred HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEE
Confidence 457889999999999765421 1223333 5789999999998764 3577654
No 142
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=39.20 E-value=14 Score=22.74 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=18.5
Q ss_pred eeeeCCCCceechHHHHHHHh-hCCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVF-QQRIPLCPSPACL 79 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~~~~C~ 79 (268)
...|+.|+..|..+.-. +. .+....|+ .|+
T Consensus 2 ~~~CP~C~~~~~v~~~~--~~~~~~~v~C~--~C~ 32 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQ--LGANGGKVRCG--KCG 32 (38)
T ss_pred EEECCCCCCEEEeCHHH--cCCCCCEEECC--CCC
Confidence 46899999987654321 11 11235788 897
No 143
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=39.10 E-value=33 Score=36.46 Aligned_cols=60 Identities=17% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHhhhcCCeEEEEccCCcccc--ccccccc-CCCCCCEEEEeeccCCC-Ccccch--hcCCchHHH
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRP--VALIPNS-LPPSVPQILINRERLSH-LNFDVE--LLGDGDVII 185 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p--~~~l~~~-~~~g~~~i~IN~~~t~~-~~~dl~--i~g~aD~vl 185 (268)
..++.+||++|++|+-....- ....... ..+|+++|.|++..+.. ..+|.+ |+-..|-.|
T Consensus 219 ~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirPGTD~AL 284 (912)
T TIGR03479 219 SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRVGTDAAL 284 (912)
T ss_pred hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCCCcHHHH
Confidence 345679999999999865432 2222222 35789999999998774 357765 444445444
No 144
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=39.02 E-value=16 Score=33.79 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=32.9
Q ss_pred HhhhcCCeEEEEccCCcccccc---cccccCCCCCCEEEEeeccCCCC-cccch
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVA---LIPNSLPPSVPQILINRERLSHL-NFDVE 176 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~---~l~~~~~~g~~~i~IN~~~t~~~-~~dl~ 176 (268)
.++.+||++|++|+-....-.. .+.+...+|+++|.|++..+... .+|.+
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~ 205 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEW 205 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEe
Confidence 4567999999999986544221 11222357899999999987642 34443
No 145
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=38.70 E-value=45 Score=27.99 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=28.8
Q ss_pred HHHhh---hcCCeEEEEccCCccccccccc---ccCCCCCCEEEEeeccCCCCcccchh
Q psy12429 125 MTLDK---NRCDLLIVIGSSLKVRPVALIP---NSLPPSVPQILINRERLSHLNFDVEL 177 (268)
Q Consensus 125 ~~~~~---~~aDlllviGTSl~V~p~~~l~---~~~~~g~~~i~IN~~~t~~~~~dl~i 177 (268)
+.+.+ .++|++|.+||.. |-+..+. +.++ ..+.|-|+.. .+-++|+.+
T Consensus 91 ~~e~~~g~g~~DlvlfvG~~~--y~~~~~ls~lk~f~-~~~~i~l~~~--y~pnA~~Sf 144 (162)
T TIGR00315 91 SWEGFDGEGNYDLVLFLGIIY--YYLSQMLSSLKHFS-HIVTIAIDKY--YQPNADYSF 144 (162)
T ss_pred hhhhccCCCCcCEEEEeCCcc--hHHHHHHHHHHhhc-CcEEEEecCC--CCCCCceec
Confidence 34556 7999999999998 3333332 3234 5566666633 333566654
No 146
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=38.43 E-value=13 Score=39.38 Aligned_cols=31 Identities=19% Similarity=0.577 Sum_probs=21.5
Q ss_pred eeccccce-----eeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 39 ECHGSFAT-----ASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 39 elHG~l~~-----~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
-|-|||.. +||++|+..|.|-.+ .-.|+ .||
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR~PL--------~G~C~--kCG 1035 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRRIPL--------VGKCL--KCG 1035 (1095)
T ss_pred HhhhhHhhhhccceeecccCCccccCCC--------CCccc--ccC
Confidence 34499865 699999999865221 23687 787
No 147
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=37.99 E-value=17 Score=29.30 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=17.8
Q ss_pred eeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
+-.|++||++|. . + +..+..|| .||.
T Consensus 9 Kr~Cp~cg~kFY----D--L-nk~p~vcP--~cg~ 34 (129)
T TIGR02300 9 KRICPNTGSKFY----D--L-NRRPAVSP--YTGE 34 (129)
T ss_pred cccCCCcCcccc----c--c-CCCCccCC--CcCC
Confidence 346999998862 1 1 33567899 9984
No 148
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=37.93 E-value=29 Score=36.02 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=35.3
Q ss_pred HhhhcCCeEEEEccCCccc-c-c----ccccccC-CCCCCEEEEeeccCCC----Ccccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVR-P-V----ALIPNSL-PPSVPQILINRERLSH----LNFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~-p-~----~~l~~~~-~~g~~~i~IN~~~t~~----~~~dl~i 177 (268)
.++.+||++|++||..... | . ..|.+.. .+|+++|.|++..+.. ..+|++|
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wl 268 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWV 268 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEE
Confidence 4678999999999997643 2 1 2233323 3689999999998763 3567654
No 149
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=37.53 E-value=16 Score=29.65 Aligned_cols=26 Identities=27% Similarity=0.768 Sum_probs=17.2
Q ss_pred eeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 47 ASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 47 ~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
.+|++||+.|...... +. --|| .||.
T Consensus 2 H~Ct~Cg~~f~dgs~e--il----~GCP--~CGg 27 (131)
T PF09845_consen 2 HQCTKCGRVFEDGSKE--IL----SGCP--ECGG 27 (131)
T ss_pred cccCcCCCCcCCCcHH--HH----ccCc--ccCC
Confidence 3799999998643321 22 3498 9984
No 150
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=37.20 E-value=32 Score=36.07 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=30.5
Q ss_pred HhhhcCCeEEEEccCCcc-ccc--ccccccC-CCCCCEEEEeeccCC
Q psy12429 127 LDKNRCDLLIVIGSSLKV-RPV--ALIPNSL-PPSVPQILINRERLS 169 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V-~p~--~~l~~~~-~~g~~~i~IN~~~t~ 169 (268)
++++++|++|++|+-... .|. .++.+.+ ++|+++|.|++..+.
T Consensus 372 ~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~ 418 (797)
T PRK07860 372 ADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATR 418 (797)
T ss_pred HHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCch
Confidence 356789999999998665 342 1222332 578999999998765
No 151
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=37.16 E-value=39 Score=28.75 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=22.2
Q ss_pred cccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 42 GSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 42 G~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
.+-....|+.|+.+|..++-.. ....|| .||
T Consensus 113 ~~~~~Y~Cp~C~~rytf~eA~~-----~~F~Cp--~Cg 143 (178)
T PRK06266 113 ENNMFFFCPNCHIRFTFDEAME-----YGFRCP--QCG 143 (178)
T ss_pred cCCCEEECCCCCcEEeHHHHhh-----cCCcCC--CCC
Confidence 4445678999999998765321 247899 998
No 152
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=36.85 E-value=39 Score=32.23 Aligned_cols=70 Identities=27% Similarity=0.259 Sum_probs=46.5
Q ss_pred cCcEEEcCCCCCHH---HHHHHHHh--hhcCCeEEEEccCCcccccccccccC---CCCCCEEEEeeccCCCC-cccchh
Q psy12429 107 KPDIVFFGEGLPDS---FHSAMTLD--KNRCDLLIVIGSSLKVRPVALIPNSL---PPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 107 rP~Iv~FgE~~p~~---~~~~~~~~--~~~aDlllviGTSl~V~p~~~l~~~~---~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
-|.-+-|-+.+|.. .+.. .+. -+++|..|||||- |.+.||+.+ -...|+|-|++-+++.. .+|+.|
T Consensus 306 Ypf~vdF~rG~prynPgE~s~-vdlL~~k~vDAalvi~sD----p~ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVvi 380 (429)
T COG1029 306 YPFAVDFSRGYPRYNPGEFSA-VDLLKRKEVDAALVIASD----PGAHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVI 380 (429)
T ss_pred CceeeecccCCcCCCcccccH-HHHHhccCCCeEEEEecC----ccccChHHHHHHhhcCCEEEecCCCCcchhhcceec
Confidence 35566676665542 1222 222 3579999999997 678887753 24689999999998864 577766
Q ss_pred cCCc
Q psy12429 178 LGDG 181 (268)
Q Consensus 178 ~g~a 181 (268)
-+-.
T Consensus 381 P~aI 384 (429)
T COG1029 381 PSAI 384 (429)
T ss_pred ccce
Confidence 5443
No 153
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=36.83 E-value=93 Score=32.44 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=8.5
Q ss_pred hhhcCCeEEEEccCCccc
Q psy12429 128 DKNRCDLLIVIGSSLKVR 145 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~ 145 (268)
.+.+-..=|+|||.+-..
T Consensus 529 ~~~~ge~dILiGTQmiaK 546 (730)
T COG1198 529 QFANGEADILIGTQMIAK 546 (730)
T ss_pred HHhCCCCCeeecchhhhc
Confidence 333333335567765433
No 154
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=36.76 E-value=30 Score=28.76 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=25.1
Q ss_pred eEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 37 VIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 37 vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
-++-..+-....|+.|+.+|..++... ....|| .||
T Consensus 100 ~l~~e~~~~~Y~Cp~c~~r~tf~eA~~-----~~F~Cp--~Cg 135 (158)
T TIGR00373 100 KLEFETNNMFFICPNMCVRFTFNEAME-----LNFTCP--RCG 135 (158)
T ss_pred HHhhccCCCeEECCCCCcEeeHHHHHH-----cCCcCC--CCC
Confidence 334445556678999999998765432 247899 998
No 155
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=35.81 E-value=18 Score=28.37 Aligned_cols=34 Identities=32% Similarity=0.636 Sum_probs=20.0
Q ss_pred eEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 37 VIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 37 vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
-+++.=-=...+|..|++.|..+.+. -.|| .|++
T Consensus 61 ~L~Ie~~p~~~~C~~Cg~~~~~~~~~--------~~CP--~Cgs 94 (113)
T PF01155_consen 61 ELEIEEVPARARCRDCGHEFEPDEFD--------FSCP--RCGS 94 (113)
T ss_dssp EEEEEEE--EEEETTTS-EEECHHCC--------HH-S--SSSS
T ss_pred EEEEEecCCcEECCCCCCEEecCCCC--------CCCc--CCcC
Confidence 34444444567999999998765432 3499 9984
No 156
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=35.75 E-value=41 Score=35.10 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=34.8
Q ss_pred HhhhcCCeEEEEccCCccc-cc-----ccccccC-CCCCCEEEEeeccCCCC--cccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVR-PV-----ALIPNSL-PPSVPQILINRERLSHL--NFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~-p~-----~~l~~~~-~~g~~~i~IN~~~t~~~--~~dl~i 177 (268)
.++.++|++|++|+-..+. +. ..+.+.. ++|+++|.|++..+... .+|.+|
T Consensus 227 ~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l 286 (814)
T PRK14990 227 SDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWI 286 (814)
T ss_pred HHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEE
Confidence 3567899999999997654 21 1122222 46899999999987752 477654
No 157
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=35.28 E-value=50 Score=34.25 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=34.9
Q ss_pred HhhhcCCeEEEEccCCcc-ccccc----cccc-CCCCCCEEEEeeccCCCC-cccch
Q psy12429 127 LDKNRCDLLIVIGSSLKV-RPVAL----IPNS-LPPSVPQILINRERLSHL-NFDVE 176 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V-~p~~~----l~~~-~~~g~~~i~IN~~~t~~~-~~dl~ 176 (268)
++++++|++|++|+.... .|... .... ..+++++|.|++..+... .+|.+
T Consensus 195 ~D~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~ 251 (765)
T COG0243 195 PDIENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLW 251 (765)
T ss_pred hhHhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCc
Confidence 458899999999999887 55332 1222 256779999999988742 45544
No 158
>PRK04023 DNA polymerase II large subunit; Validated
Probab=35.21 E-value=16 Score=39.04 Aligned_cols=30 Identities=27% Similarity=0.678 Sum_probs=21.0
Q ss_pred eccccce-----eeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 40 CHGSFAT-----ASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 40 lHG~l~~-----~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
|-|||.. +||++|+..|.|-.+ .-.|+ .||
T Consensus 1026 l~GNLRaFsrQ~fRC~kC~~kYRR~PL--------~G~C~--kCG 1060 (1121)
T PRK04023 1026 LIGNLRAFSRQEFRCTKCGAKYRRPPL--------SGKCP--KCG 1060 (1121)
T ss_pred hhhhhhhhcccceeecccCcccccCCC--------CCcCc--cCC
Confidence 4499865 699999999865221 23677 787
No 159
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=34.84 E-value=40 Score=38.37 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=40.7
Q ss_pred hhhcCCeEEEEccCCcc-cccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHH
Q psy12429 128 DKNRCDLLIVIGSSLKV-RPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCR 190 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V-~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~ 190 (268)
.+.++|++|++|+++.- .....+....+ ..+|.|+.++...+ ..+..|.+++..++..|..
T Consensus 595 ~~~~aDlVl~iG~rl~s~~~t~~~~~~~~--~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~ 659 (1655)
T PLN02980 595 NWIQFDVVIQIGSRITSKRVSQMLEKCFP--FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLK 659 (1655)
T ss_pred ccCCCCEEEEeCCccccHHHHHHHHhCCC--CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhh
Confidence 35789999999999852 22222211122 24788888775533 3567899999999988765
No 160
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=34.77 E-value=21 Score=24.01 Aligned_cols=26 Identities=35% Similarity=0.735 Sum_probs=17.8
Q ss_pred eeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
..+|..|++.+... .....-+|| .||
T Consensus 6 ~Y~C~~Cg~~~~~~------~~~~~irCp--~Cg 31 (49)
T COG1996 6 EYKCARCGREVELD------QETRGIRCP--YCG 31 (49)
T ss_pred EEEhhhcCCeeehh------hccCceeCC--CCC
Confidence 45899999987321 123356899 998
No 161
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.37 E-value=16 Score=26.83 Aligned_cols=30 Identities=23% Similarity=0.675 Sum_probs=18.7
Q ss_pred ceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
+..+|..|+..++ .++ .+.+...-.|+ .|+
T Consensus 11 Y~Y~c~~cg~~~d--vvq-~~~ddplt~ce--~c~ 40 (82)
T COG2331 11 YSYECTECGNRFD--VVQ-AMTDDPLTTCE--ECG 40 (82)
T ss_pred eEEeecccchHHH--HHH-hcccCccccCh--hhC
Confidence 4578999998753 222 33333335688 897
No 162
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=34.33 E-value=38 Score=35.04 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=34.7
Q ss_pred HhhhcCCeEEEEccCCcc-cccc--c-ccccC-CCCCCEEEEeeccCCC-Ccccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKV-RPVA--L-IPNSL-PPSVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V-~p~~--~-l~~~~-~~g~~~i~IN~~~t~~-~~~dl~i 177 (268)
.++.+||++|++|+-... .|.. . +.+.. .+|+++|.|++..+.. ..+|.+|
T Consensus 192 ~D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l 248 (759)
T PRK15488 192 RDLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWH 248 (759)
T ss_pred CCHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeee
Confidence 356789999999998765 3332 2 22223 5789999999998774 2456543
No 163
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.19 E-value=76 Score=24.14 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeec--cccceeeeCCCCceech
Q psy12429 5 DAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH--GSFATASCTRCGHRVSA 58 (268)
Q Consensus 5 H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielH--G~l~~~~C~~C~~~~~~ 58 (268)
.+.|..|++.|.+.++-+.| | ...+++. ..=....|.+||+.++.
T Consensus 39 YR~L~~L~~~Gli~~~~~~~--~-------~~~y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 39 YRTLELLEEAGLVREIELGD--G-------KARYELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred HHHHHHHHhCCCEEEEEeCC--C-------ceEEEeCCCCCCCceEeCCCCCEEEe
Confidence 46788889999887764433 1 1233332 22246899999988754
No 164
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=34.09 E-value=24 Score=35.48 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=31.4
Q ss_pred hhhcCCeEEEEccCCccc-ccc--cccccCCCC-CCEEEEeeccCCC-Ccccchh
Q psy12429 128 DKNRCDLLIVIGSSLKVR-PVA--LIPNSLPPS-VPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~-p~~--~l~~~~~~g-~~~i~IN~~~t~~-~~~dl~i 177 (268)
++.++|++|++|+..... |.. .+.+..++| +++|.|++..+.. ..+|.++
T Consensus 359 di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l 413 (603)
T TIGR01973 359 DIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNL 413 (603)
T ss_pred HHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccce
Confidence 457799999999986543 211 122223344 8999999887664 2456543
No 165
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=33.90 E-value=17 Score=39.72 Aligned_cols=31 Identities=19% Similarity=0.553 Sum_probs=21.5
Q ss_pred eeccccce-----eeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 39 ECHGSFAT-----ASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 39 elHG~l~~-----~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
-|-|||.. +||++|+..|.|-.+ .-.|+ .||
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR~PL--------~G~C~--kCG 1276 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRRMPL--------AGKCR--KCG 1276 (1337)
T ss_pred hhhhhhhhhhccceeecccCcccccCCC--------CCccc--ccC
Confidence 34499865 699999999865221 23677 787
No 166
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=33.49 E-value=56 Score=30.95 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=29.1
Q ss_pred HHhhhcCCeEEEEccCCcccc-cc--cccccC-CCCCCEEEEeecc
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRP-VA--LIPNSL-PPSVPQILINRER 167 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p-~~--~l~~~~-~~g~~~i~IN~~~ 167 (268)
.+.+++||++|+|||-+...- .- ++.+.. +.+++++.|++..
T Consensus 143 l~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 143 LKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred HHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 456889999999999977542 22 222222 4578999998776
No 167
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=32.88 E-value=19 Score=28.22 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=19.8
Q ss_pred eeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 39 ECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 39 elHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
++.=-=-..+|..|++.+..+.. .-.|| .||+
T Consensus 63 ~I~~vp~~~~C~~Cg~~~~~~~~--------~~~CP--~Cgs 94 (113)
T PRK12380 63 HIVYKPAQAWCWDCSQVVEIHQH--------DAQCP--HCHG 94 (113)
T ss_pred EEEeeCcEEEcccCCCEEecCCc--------CccCc--CCCC
Confidence 33333345789999987754321 23499 9984
No 168
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.76 E-value=18 Score=28.59 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=17.9
Q ss_pred cceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 44 FATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 44 l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
=-..+|..|++.+..+. .....|| .||+
T Consensus 69 p~~~~C~~Cg~~~~~~~-------~~~~~CP--~Cgs 96 (117)
T PRK00564 69 KVELECKDCSHVFKPNA-------LDYGVCE--KCHS 96 (117)
T ss_pred CCEEEhhhCCCccccCC-------ccCCcCc--CCCC
Confidence 34568999997664321 1134699 9984
No 169
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=32.53 E-value=23 Score=21.95 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=18.8
Q ss_pred eeeeCCCCceechHHHHHHHhh-CCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQ-QRIPLCPSPACL 79 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~~~~C~ 79 (268)
...|.+|+..|..++-. +.. +..-.|+ .|+
T Consensus 2 ~i~Cp~C~~~y~i~d~~--ip~~g~~v~C~--~C~ 32 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK--IPPKGRKVRCS--KCG 32 (36)
T ss_pred EEECCCCCCEEeCCHHH--CCCCCcEEECC--CCC
Confidence 46899999998765422 211 2234688 886
No 170
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=32.24 E-value=40 Score=23.13 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=17.2
Q ss_pred eeeCCCCceechHHHHHHHhhCCCCCCC
Q psy12429 47 ASCTRCGHRVSAEAIKADVFQQRIPLCP 74 (268)
Q Consensus 47 ~~C~~C~~~~~~~~~~~~~~~~~~p~C~ 74 (268)
++..+|++.|.++.+..-+.......||
T Consensus 25 V~s~~C~H~fek~aI~~~i~~~~~~~CP 52 (57)
T PF11789_consen 25 VKSKKCGHTFEKEAILQYIQRNGSKRCP 52 (57)
T ss_dssp EEESSS--EEEHHHHHHHCTTTS-EE-S
T ss_pred cCcCCCCCeecHHHHHHHHHhcCCCCCC
Confidence 4556899999999887766444456788
No 171
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.70 E-value=28 Score=21.64 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=18.8
Q ss_pred eeeeCCCCceechHHHHHHHh-hCCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVF-QQRIPLCPSPACL 79 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~~~~C~ 79 (268)
..+|++|+..|..++-. +. .+..-+|+ .|+
T Consensus 2 ~i~CP~C~~~f~v~~~~--l~~~~~~vrC~--~C~ 32 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK--LPAGGRKVRCP--KCG 32 (37)
T ss_pred EEECCCCCceEEcCHHH--cccCCcEEECC--CCC
Confidence 46899999988654422 21 22335788 886
No 172
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=31.48 E-value=56 Score=34.30 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=33.6
Q ss_pred HhhhcCCeEEEEccCCccc-cc--cccccc-C-CCCCCEEEEeeccCCC-Ccccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVR-PV--ALIPNS-L-PPSVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~-p~--~~l~~~-~-~~g~~~i~IN~~~t~~-~~~dl~i 177 (268)
+++.++|++|++|+..... |. ..+... . .+|+++|.|++..+.. ..+|.+|
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l 258 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGI 258 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeee
Confidence 4568899999999986542 21 223222 2 4789999999887664 2456543
No 173
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=30.89 E-value=53 Score=34.09 Aligned_cols=56 Identities=14% Similarity=0.010 Sum_probs=36.1
Q ss_pred hhcCCeEEEEccCCccc----------cccccccc-CCCCCCEEEEeeccCCCCc-c-cch--hcCCchHH
Q psy12429 129 KNRCDLLIVIGSSLKVR----------PVALIPNS-LPPSVPQILINRERLSHLN-F-DVE--LLGDGDVI 184 (268)
Q Consensus 129 ~~~aDlllviGTSl~V~----------p~~~l~~~-~~~g~~~i~IN~~~t~~~~-~-dl~--i~g~aD~v 184 (268)
+.+||++|+.|+...+. +....... .++|+++|.|++..+.... + |++ |.=..|-+
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l~irPGTD~A 235 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWIPPNPQTDVA 235 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEeCcCCCcHHH
Confidence 57999999999996643 11222222 3579999999999887532 2 554 44334433
No 174
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.79 E-value=81 Score=25.49 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeec--cccceeeeCCCCceech
Q psy12429 5 DAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH--GSFATASCTRCGHRVSA 58 (268)
Q Consensus 5 H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielH--G~l~~~~C~~C~~~~~~ 58 (268)
.+.|..|++.|.+..+-..| | ...+++. +.=..+.|..||+.++.
T Consensus 56 YR~L~~L~e~Gli~~~~~~~--~-------~~~y~~~~~~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 56 YRVLNQFDDAGIVTRHNFEG--G-------KSVFELTQQHHHDHLICLDCGKVIEF 102 (148)
T ss_pred HHHHHHHHHCCCEEEEEcCC--C-------cEEEEeCCCCCCCceEECCCCCEEEe
Confidence 36788888889887765443 1 1223331 11135899999987654
No 175
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.60 E-value=63 Score=29.74 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=31.4
Q ss_pred ccCcEEEcCCCCCHHHHHH----HHHhhhcCCeEEEEccCCcccccccc
Q psy12429 106 MKPDIVFFGEGLPDSFHSA----MTLDKNRCDLLIVIGSSLKVRPVALI 150 (268)
Q Consensus 106 lrP~Iv~FgE~~p~~~~~~----~~~~~~~aDlllviGTSl~V~p~~~l 150 (268)
-||.+++|||++-..-.+. ..+.....|-.|.+|+-..-.-...+
T Consensus 107 ~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~s~~w~~~ 155 (289)
T PF10081_consen 107 RRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFFSPLWREL 155 (289)
T ss_pred cCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCCChhHHHh
Confidence 5899999999986542233 34456779999999997654443344
No 176
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=30.37 E-value=49 Score=32.56 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=43.0
Q ss_pred hcCCeEEEEccCCcccccccccccC---CCCCCEEEEeeccCCC--------CcccchhcCCchHHHHHHHHHh
Q psy12429 130 NRCDLLIVIGSSLKVRPVALIPNSL---PPSVPQILINRERLSH--------LNFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 130 ~~aDlllviGTSl~V~p~~~l~~~~---~~g~~~i~IN~~~t~~--------~~~dl~i~g~aD~vl~~L~~~L 192 (268)
.++|++.+-.++...+.+..+.+.+ ..++++|+=....+.. ..+|..+.|+.+..+.+|++.+
T Consensus 62 ~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 62 HCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 4689888866665555555555432 2356666656655542 1378999999999999999876
No 177
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.20 E-value=37 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=17.3
Q ss_pred eeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 47 ASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 47 ~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
..|..||..+..+ ....-.|+ .||
T Consensus 3 Y~C~~Cg~~~~~~-------~~~~irC~--~CG 26 (44)
T smart00659 3 YICGECGRENEIK-------SKDVVRCR--ECG 26 (44)
T ss_pred EECCCCCCEeecC-------CCCceECC--CCC
Confidence 5799999987543 23356899 998
No 178
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.69 E-value=53 Score=20.02 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=16.6
Q ss_pred eeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
..+|..||..+..+ .....|| .|+
T Consensus 2 ~~~C~~CG~i~~g~--------~~p~~CP--~Cg 25 (34)
T cd00729 2 VWVCPVCGYIHEGE--------EAPEKCP--ICG 25 (34)
T ss_pred eEECCCCCCEeECC--------cCCCcCc--CCC
Confidence 45899999886432 1234799 998
No 179
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=29.47 E-value=24 Score=27.76 Aligned_cols=26 Identities=31% Similarity=0.713 Sum_probs=17.9
Q ss_pred ceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
-..+|..|++.+....+ .-.|| .||+
T Consensus 69 ~~~~C~~Cg~~~~~~~~--------~~~CP--~Cgs 94 (115)
T TIGR00100 69 VECECEDCSEEVSPEID--------LYRCP--KCHG 94 (115)
T ss_pred cEEEcccCCCEEecCCc--------CccCc--CCcC
Confidence 35789999988754321 24599 9984
No 180
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=29.17 E-value=33 Score=21.00 Aligned_cols=26 Identities=31% Similarity=0.781 Sum_probs=14.7
Q ss_pred cccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 42 GSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 42 G~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
|.|...+|.+|+..+.. ..+.|+ .|+
T Consensus 7 ~~l~~~rC~~Cg~~~~p----------Pr~~Cp--~C~ 32 (37)
T PF12172_consen 7 GRLLGQRCRDCGRVQFP----------PRPVCP--HCG 32 (37)
T ss_dssp T-EEEEE-TTT--EEES------------SEET--TTT
T ss_pred CEEEEEEcCCCCCEecC----------CCcCCC--CcC
Confidence 56677899999986421 126798 997
No 181
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.81 E-value=28 Score=19.36 Aligned_cols=20 Identities=30% Similarity=0.947 Sum_probs=12.9
Q ss_pred eeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 48 SCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 48 ~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
+|++||+.... ...-|+ .||
T Consensus 1 ~Cp~CG~~~~~----------~~~fC~--~CG 20 (23)
T PF13240_consen 1 YCPNCGAEIED----------DAKFCP--NCG 20 (23)
T ss_pred CCcccCCCCCC----------cCcchh--hhC
Confidence 48888876532 234588 887
No 182
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=28.68 E-value=48 Score=30.55 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHhhhcCCeEEEEccCCcccccccccccC-CCCCCEEEEeec
Q psy12429 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVPQILINRE 166 (268)
Q Consensus 124 ~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~~i~IN~~ 166 (268)
+..+.+.++|++||||..-+-- ..+|...+ ..|.+-++|+..
T Consensus 205 Avk~la~~~Dl~iVVG~~nSSN-s~rL~eiA~~~g~~aylId~~ 247 (294)
T COG0761 205 AVKELAPEVDLVIVVGSKNSSN-SNRLAEIAKRHGKPAYLIDDA 247 (294)
T ss_pred HHHHHhhcCCEEEEECCCCCcc-HHHHHHHHHHhCCCeEEeCCh
Confidence 4456778899999999875522 44565544 456677877544
No 183
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=28.44 E-value=28 Score=33.40 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=17.2
Q ss_pred ceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
++++|..|++.|+ +.. ...|+ .|+
T Consensus 1 ~~l~C~~Cg~~~~-~~~--------~~~C~--~c~ 24 (398)
T TIGR03844 1 YTLRCPGCGEVLP-DHY--------TLSCP--LDC 24 (398)
T ss_pred CEEEeCCCCCccC-Ccc--------ccCCC--CCC
Confidence 4679999999986 321 25798 776
No 184
>PRK07591 threonine synthase; Validated
Probab=28.11 E-value=31 Score=33.25 Aligned_cols=27 Identities=22% Similarity=0.671 Sum_probs=19.5
Q ss_pred ccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 43 SFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 43 ~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
.+..++|..|++.|+.+. ...|+ .|+.
T Consensus 15 ~~~~l~C~~Cg~~~~~~~---------~~~C~--~cg~ 41 (421)
T PRK07591 15 PAVALKCRECGAEYPLGP---------IHVCE--ECFG 41 (421)
T ss_pred ceeEEEeCCCCCcCCCCC---------CccCC--CCCC
Confidence 455689999999986431 25798 8973
No 185
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=27.97 E-value=81 Score=31.07 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=32.3
Q ss_pred HhhhcCCeEEEEccCCccc---ccc--c-ccccCCC-----CCCEEEEeeccCCC-Ccccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVR---PVA--L-IPNSLPP-----SVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~---p~~--~-l~~~~~~-----g~~~i~IN~~~t~~-~~~dl~i 177 (268)
.++.++|++|++|+..... |.. . +....++ |.++|.|++..+.. ..+|.+|
T Consensus 192 ~D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l 254 (524)
T cd02764 192 YDFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRL 254 (524)
T ss_pred cChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhccee
Confidence 3568899999999987654 111 1 1111122 34999999998774 2566654
No 186
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.85 E-value=36 Score=26.08 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=20.1
Q ss_pred hhcCCeEEEEccCCcccccccccccCCCCCCEEEEeecc
Q psy12429 129 KNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRER 167 (268)
Q Consensus 129 ~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~ 167 (268)
..+|||+||.|+|+-=-|. -.|.++.++..+.
T Consensus 38 p~dAeLviV~G~sipnd~~-------l~GKkv~i~d~~~ 69 (103)
T COG3925 38 PNDAELVIVFGSSIPNDSA-------LNGKKVWIGDIER 69 (103)
T ss_pred CCcccEEEEeccccCCCcc-------ccCceEEEecHHH
Confidence 3579999999999743332 1355555554443
No 187
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=27.84 E-value=32 Score=27.86 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=11.7
Q ss_pred ceeeeCCCCceechH
Q psy12429 45 ATASCTRCGHRVSAE 59 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~ 59 (268)
-..+|..||+.+..+
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 457899999887654
No 188
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=27.43 E-value=47 Score=28.38 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhhhc--CCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCC
Q psy12429 118 PDSFHSAMTLDKNR--CDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH 170 (268)
Q Consensus 118 p~~~~~~~~~~~~~--aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~ 170 (268)
|...++...+.+++ .+-+++|||||-=+-|..|... .+.+-|+||+--.+.
T Consensus 42 p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~--~~~~avLiNPav~p~ 94 (187)
T PF05728_consen 42 PEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAER--YGLPAVLINPAVRPY 94 (187)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHH--hCCCEEEEcCCCCHH
Confidence 44444444444443 3349999999975544444333 366779999876553
No 189
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=27.39 E-value=45 Score=28.99 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=37.1
Q ss_pred HhCCCcch-hHHHhhhc-CCCCCCceecccccccC-CCcccccCCCchhHHHHH
Q psy12429 191 ALGESWTG-TLLELYNS-LPPSVPQILINRERLSH-LNFDVELLGDGDVIIDTL 241 (268)
Q Consensus 191 ~LG~~w~~-~~~~~~~~-~~~~~pqil~n~e~~~~-~~~~~~~~~~~~~~~~~~ 241 (268)
.+|++..+ |..++... .....|-+.+|.++... -.+++.+.|++++++.++
T Consensus 170 vlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 170 VIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGEVLPAL 223 (224)
T ss_pred EECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHh
Confidence 47999888 56565543 35678999999886544 347888899999777654
No 190
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=27.23 E-value=1.4e+02 Score=28.07 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=30.9
Q ss_pred hcCCeEEEEccCCccc-ccc--cc---cc----c-CCCCCCEEEEeeccCCCC-cccchh
Q psy12429 130 NRCDLLIVIGSSLKVR-PVA--LI---PN----S-LPPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 130 ~~aDlllviGTSl~V~-p~~--~l---~~----~-~~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
.++|++|++|+-.... |.. ++ .+ . .++|++++.|++..+... .+|.++
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l 189 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHL 189 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEE
Confidence 4899999999886654 211 11 11 1 146789999999887642 456544
No 191
>PRK04016 DNA-directed RNA polymerase subunit N; Provisional
Probab=26.99 E-value=56 Score=23.03 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=16.2
Q ss_pred cceeeeCCCCcee--chHHHHHHHhh
Q psy12429 44 FATASCTRCGHRV--SAEAIKADVFQ 67 (268)
Q Consensus 44 l~~~~C~~C~~~~--~~~~~~~~~~~ 67 (268)
+.-.+|.+||+.. .|+.|...+..
T Consensus 2 iiPvRCFTCGkvi~~~we~y~~~~~~ 27 (62)
T PRK04016 2 MIPVRCFTCGKVIAEKWEEFKERVEA 27 (62)
T ss_pred CCCeEecCCCCChHHHHHHHHHHHHc
Confidence 3457999999976 34666655533
No 192
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=26.83 E-value=78 Score=33.29 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=33.3
Q ss_pred HhhhcCCeEEEEccCCccc-cc--cccccc-C-CCCCCEEEEeeccCCC-Ccccch
Q psy12429 127 LDKNRCDLLIVIGSSLKVR-PV--ALIPNS-L-PPSVPQILINRERLSH-LNFDVE 176 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~-p~--~~l~~~-~-~~g~~~i~IN~~~t~~-~~~dl~ 176 (268)
.++.++|++|++|+..... |. ..+... . .+|+++|.|++..+.. ..+|.+
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ta~~Ad~~ 257 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHRSFDLADIG 257 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCchhHHhCee
Confidence 4568899999999986643 21 223221 2 4689999999887764 245654
No 193
>PF01194 RNA_pol_N: RNA polymerases N / 8 kDa subunit; InterPro: IPR000268 In eukaryotes, there are three different forms of DNA-dependent RNA polymerases (2.7.7.6 from EC) transcribing different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. In archaebacteria, there is generally a single form of RNA polymerase which also consists of an oligomeric assemblage of 10 to 13 polypeptides. Archaebacterial subunit N (gene rpoN) [] is a small protein of about 8 kDa, it is evolutionary related [] to a 8.3 kDa component shared by all three forms of eukaryotic RNA polymerases (gene RPB10 in yeast and POLR2J in mammals) as well as to African swine fever virus (ASFV) protein CP80R []. There is a conserved region which is located at the N-terminal extremity of these polymerase subunits; this region contains two cysteines that binds a zinc ion [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_N 3HKZ_N 1EF4_A 3H0G_V 2Y0S_N 2R92_J 3M4O_J 3S2D_J 1R9S_J 1Y1W_J ....
Probab=26.57 E-value=41 Score=23.57 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=15.0
Q ss_pred ceeeeCCCCcee--chHHHHHHHhh
Q psy12429 45 ATASCTRCGHRV--SAEAIKADVFQ 67 (268)
Q Consensus 45 ~~~~C~~C~~~~--~~~~~~~~~~~ 67 (268)
.-++|.+||+.. .|+.|...+.+
T Consensus 3 iPVRCFTCGkvi~~~~e~y~~~~~~ 27 (60)
T PF01194_consen 3 IPVRCFTCGKVIGNKWEEYLERLEN 27 (60)
T ss_dssp -SSS-STTTSBTCGHHHHHHHHHHT
T ss_pred CceecCCCCCChhHhHHHHHHHHHc
Confidence 347999999986 56667665544
No 194
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=26.35 E-value=75 Score=32.76 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=27.9
Q ss_pred HhhhcCCeEEEEccCCccc-ccc--cccccCCCC-CCEEEEeeccCC
Q psy12429 127 LDKNRCDLLIVIGSSLKVR-PVA--LIPNSLPPS-VPQILINRERLS 169 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~-p~~--~l~~~~~~g-~~~i~IN~~~t~ 169 (268)
+.+++||++|++||..... |.. ++.+...+| .+++.|++..+.
T Consensus 360 ~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~ 406 (687)
T PRK09130 360 AGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADL 406 (687)
T ss_pred HHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 3467899999999997543 211 122223456 499999987544
No 195
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=26.24 E-value=42 Score=20.84 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=16.4
Q ss_pred eeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 47 ASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 47 ~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
..|.+||+.|.....- ....-.|. .||
T Consensus 2 r~C~~Cg~~Yh~~~~p----P~~~~~Cd--~cg 28 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNP----PKVEGVCD--NCG 28 (36)
T ss_dssp EEETTTTEEEETTTB------SSTTBCT--TTT
T ss_pred cCcCCCCCccccccCC----CCCCCccC--CCC
Confidence 4799999998753211 12234677 776
No 196
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=26.16 E-value=31 Score=27.05 Aligned_cols=26 Identities=31% Similarity=0.718 Sum_probs=16.9
Q ss_pred eeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
..+|.+|++.++... ...-.|| .||+
T Consensus 70 ~~~C~~Cg~~~~~~~-------~~~~~CP--~Cgs 95 (114)
T PRK03681 70 ECWCETCQQYVTLLT-------QRVRRCP--QCHG 95 (114)
T ss_pred EEEcccCCCeeecCC-------ccCCcCc--CcCC
Confidence 468999998765321 1123599 9984
No 197
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.99 E-value=41 Score=19.38 Aligned_cols=20 Identities=35% Similarity=1.019 Sum_probs=13.6
Q ss_pred eeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 48 SCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 48 ~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
.|+.|++.++.. .-.|| .||
T Consensus 2 ~CP~C~~~V~~~----------~~~Cp--~CG 21 (26)
T PF10571_consen 2 TCPECGAEVPES----------AKFCP--HCG 21 (26)
T ss_pred cCCCCcCCchhh----------cCcCC--CCC
Confidence 588888775321 35688 887
No 198
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=25.97 E-value=26 Score=19.95 Aligned_cols=22 Identities=27% Similarity=0.850 Sum_probs=14.6
Q ss_pred eeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
...|.+|++..+. +..-|+ .||
T Consensus 2 ~~~Cp~Cg~~~~~----------~~~fC~--~CG 23 (26)
T PF13248_consen 2 EMFCPNCGAEIDP----------DAKFCP--NCG 23 (26)
T ss_pred cCCCcccCCcCCc----------ccccCh--hhC
Confidence 3579999985432 235688 887
No 199
>COG1644 RPB10 DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription]
Probab=25.94 E-value=55 Score=23.06 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=16.7
Q ss_pred cceeeeCCCCcee--chHHHHHHHhhC
Q psy12429 44 FATASCTRCGHRV--SAEAIKADVFQQ 68 (268)
Q Consensus 44 l~~~~C~~C~~~~--~~~~~~~~~~~~ 68 (268)
+.-.+|.+||+.. .|+.|...+..+
T Consensus 2 iiPiRCFsCGkvi~~~w~~y~~rv~~g 28 (63)
T COG1644 2 IIPVRCFSCGKVIGHKWEEYKRRVEEG 28 (63)
T ss_pred CCceEeecCCCCHHHHHHHHHHHHHcC
Confidence 3457999999875 356666655544
No 200
>PRK12496 hypothetical protein; Provisional
Probab=25.08 E-value=48 Score=27.75 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=17.0
Q ss_pred eeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
..+|..|++.|+.+ ...-.|| .||.
T Consensus 127 ~~~C~gC~~~~~~~--------~~~~~C~--~CG~ 151 (164)
T PRK12496 127 RKVCKGCKKKYPED--------YPDDVCE--ICGS 151 (164)
T ss_pred eEECCCCCccccCC--------CCCCcCC--CCCC
Confidence 46799999887532 1124599 9994
No 201
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=23.74 E-value=21 Score=33.57 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=34.2
Q ss_pred HhhhcCCeEEEEccCCcccccc---ccccc-CCCCCCEEEEeeccCCC-Ccccch--hcCCchHHH
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVA---LIPNS-LPPSVPQILINRERLSH-LNFDVE--LLGDGDVII 185 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~---~l~~~-~~~g~~~i~IN~~~t~~-~~~dl~--i~g~aD~vl 185 (268)
.++.+||++|++|+........ .+... .++|+++|.|++..+.. ..+|.+ +.=..|..+
T Consensus 107 ~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i~PGtD~al 172 (432)
T PF00384_consen 107 EDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPIRPGTDAAL 172 (432)
T ss_dssp HGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE-TTTHHHH
T ss_pred ceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccccccccccccHHh
Confidence 3789999999999986644321 22222 35689999999998863 345554 333344444
No 202
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=23.55 E-value=2.8e+02 Score=23.06 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=29.3
Q ss_pred CHHHHHHHHHhh-hcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccC
Q psy12429 118 PDSFHSAMTLDK-NRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERL 168 (268)
Q Consensus 118 p~~~~~~~~~~~-~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t 168 (268)
++...+.+...+ .++|.+|+.+++..... +......|.|+|.++....
T Consensus 41 ~~~~~~~~~~~~~~~~d~iii~~~~~~~~~---~~~~~~~~ipvv~~~~~~~ 89 (264)
T cd06267 41 PEKEREALELLLSRRVDGIILAPSRLDDEL---LEELAALGIPVVLVDRPLD 89 (264)
T ss_pred HHHHHHHHHHHHHcCcCEEEEecCCcchHH---HHHHHHcCCCEEEeccccc
Confidence 333334444333 47999999988754322 3223467889999987643
No 203
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=23.44 E-value=81 Score=17.72 Aligned_cols=17 Identities=18% Similarity=0.747 Sum_probs=13.2
Q ss_pred eeeCCCCceechHHHHH
Q psy12429 47 ASCTRCGHRVSAEAIKA 63 (268)
Q Consensus 47 ~~C~~C~~~~~~~~~~~ 63 (268)
..|..|++.|..+.+..
T Consensus 3 ~~C~~CgR~F~~~~l~~ 19 (25)
T PF13913_consen 3 VPCPICGRKFNPDRLEK 19 (25)
T ss_pred CcCCCCCCEECHHHHHH
Confidence 57999999997766654
No 204
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=23.34 E-value=62 Score=30.22 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=29.4
Q ss_pred HhhhcCCeEEEEccCCccc-ccc--cccccC-CCCCCEEEEeeccCC
Q psy12429 127 LDKNRCDLLIVIGSSLKVR-PVA--LIPNSL-PPSVPQILINRERLS 169 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~-p~~--~l~~~~-~~g~~~i~IN~~~t~ 169 (268)
.++.++|++|++|+-.... |.. ++.+.. ++|++++.|++..+.
T Consensus 141 ~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~ 187 (375)
T cd02773 141 AGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDL 187 (375)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCcccc
Confidence 4578999999999987533 422 222222 458899999887655
No 205
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=23.19 E-value=84 Score=33.22 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=39.2
Q ss_pred HhhhcCCeEEEEccCCcc-cccccc-cccC--CCCCCEEEEeeccCCC--C--cccchh--c-CCchHHHHHHHHHhC
Q psy12429 127 LDKNRCDLLIVIGSSLKV-RPVALI-PNSL--PPSVPQILINRERLSH--L--NFDVEL--L-GDGDVIIDTLCRALG 193 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V-~p~~~l-~~~~--~~g~~~i~IN~~~t~~--~--~~dl~i--~-g~aD~vl~~L~~~LG 193 (268)
+++.++|++|++|+-+.- .|+... ++.+ .+|+++|.|.+..+.. . ..++.+ . |.=..++..|++.+.
T Consensus 366 ~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~ii 443 (819)
T PRK08493 366 EDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKFL 443 (819)
T ss_pred HHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHHH
Confidence 457789999999997643 442222 2222 3788899988887653 1 233444 3 333344555555553
No 206
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=23.02 E-value=21 Score=33.45 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=25.0
Q ss_pred eeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 39 ECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 39 elHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
..-|-.+...|.+|.++|..++... ..-+|| .||
T Consensus 239 P~LGKY~~TAC~rC~t~y~le~A~~-----~~wrCp--kCG 272 (403)
T COG1379 239 PRLGKYHLTACSRCYTRYSLEEAKS-----LRWRCP--KCG 272 (403)
T ss_pred ccccchhHHHHHHhhhccCcchhhh-----hcccCc--ccc
Confidence 4457778889999999987655432 136799 998
No 207
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=22.94 E-value=48 Score=35.91 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=36.3
Q ss_pred hhhcCCeEEEEccCCccc--cccc----ccccCCCC-CCEEEEeeccCCC-----Ccccch--hcCCchHHH
Q psy12429 128 DKNRCDLLIVIGSSLKVR--PVAL----IPNSLPPS-VPQILINRERLSH-----LNFDVE--LLGDGDVII 185 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~--p~~~----l~~~~~~g-~~~i~IN~~~t~~-----~~~dl~--i~g~aD~vl 185 (268)
++.++|++|++||+.... |+.. +.+...+| +++|.|.+..+.. ..+|.+ |+=..|..|
T Consensus 282 D~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wlpIrPGTD~AL 353 (1031)
T PRK14991 282 DWDNVEFALFIGTSPAQSGNPFKRQARQLANARTRGNFEYVVVAPALPLSSSLAAGDNNRWLPIRPGTDSAL 353 (1031)
T ss_pred hhhcCcEEEEeCcChhHhCCchHHHHHHHHHHHHcCCCEEEEECCCCCCchhhhhhcCCEEeCCCCCcHHHH
Confidence 457899999999997653 3322 22223455 7999999998763 235655 443344433
No 208
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.76 E-value=63 Score=19.60 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=15.0
Q ss_pred eeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 48 SCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 48 ~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
.|..|+..... ...+.-+|+ .||
T Consensus 2 ~C~~Cg~~~~~-------~~~~~irC~--~CG 24 (32)
T PF03604_consen 2 ICGECGAEVEL-------KPGDPIRCP--ECG 24 (32)
T ss_dssp BESSSSSSE-B-------STSSTSSBS--SSS
T ss_pred CCCcCCCeeEc-------CCCCcEECC--cCC
Confidence 58899987642 223445899 997
No 209
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.73 E-value=1.1e+02 Score=30.99 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=30.1
Q ss_pred hhhcCCeEEEEccCCccc-c----------ccc-ccccCCCCCCEEEEeeccCCC
Q psy12429 128 DKNRCDLLIVIGSSLKVR-P----------VAL-IPNSLPPSVPQILINRERLSH 170 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~-p----------~~~-l~~~~~~g~~~i~IN~~~t~~ 170 (268)
++.+||++|+.|+-.... + ... +.+...+|+++|.|++..+..
T Consensus 167 ~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~t 221 (609)
T cd02769 167 IAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDT 221 (609)
T ss_pred HHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcc
Confidence 357999999999986542 1 111 222235799999999998875
No 210
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=21.89 E-value=43 Score=25.52 Aligned_cols=56 Identities=29% Similarity=0.495 Sum_probs=29.3
Q ss_pred eeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFG 114 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~Fg 114 (268)
.+.|..||.......- ....--.|| .|... ..+++ ..+-+...|+|.|.|--|+.-
T Consensus 4 ~F~C~~CG~~V~p~~~----g~~~RNHCP--~CL~S---~Hvd~----~pGDRas~C~g~M~Pi~v~~~ 59 (92)
T PF12647_consen 4 SFTCVHCGLTVSPLAA----GSAHRNHCP--SCLSS---LHVDI----VPGDRASDCGGRMEPIAVWVR 59 (92)
T ss_pred ccCccccCCCcccCCC----CCCccCcCc--ccccc---cccCC----CCCCccccCCCeeeEEEEEEE
Confidence 4679999976432100 001124688 88632 11111 112233348899999888863
No 211
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=21.79 E-value=53 Score=31.04 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=29.2
Q ss_pred HHhhhcCCeEEEEccCCcc-cccc-ccccc-CCCCCCEEEEeeccCC
Q psy12429 126 TLDKNRCDLLIVIGSSLKV-RPVA-LIPNS-LPPSVPQILINRERLS 169 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V-~p~~-~l~~~-~~~g~~~i~IN~~~t~ 169 (268)
..++.++|++|++|+.... .|.. ...+. ..+|+++|.|++..+.
T Consensus 147 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 147 IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 3467889999999998642 2211 11222 3578899999987654
No 212
>PLN00032 DNA-directed RNA polymerase; Provisional
Probab=21.73 E-value=82 Score=22.83 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=15.6
Q ss_pred ceeeeCCCCcee--chHHHHHHHh
Q psy12429 45 ATASCTRCGHRV--SAEAIKADVF 66 (268)
Q Consensus 45 ~~~~C~~C~~~~--~~~~~~~~~~ 66 (268)
.-++|.+||+.. .|+.|...+.
T Consensus 3 iPVRCFTCGkvig~~we~y~~~~~ 26 (71)
T PLN00032 3 IPVRCFTCGKVIGNKWDTYLDLLQ 26 (71)
T ss_pred CceeecCCCCCcHHHHHHHHHHHh
Confidence 357999999976 4666665553
No 213
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=21.46 E-value=1.9e+02 Score=21.82 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=39.5
Q ss_pred ccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC----CCcccchhcCCc
Q psy12429 106 MKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS----HLNFDVELLGDG 181 (268)
Q Consensus 106 lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~----~~~~dl~i~g~a 181 (268)
.+++|.+.|-. + ...+.++.||++|..-..-...| ..+...+..|.|+|.-+. ... .......+.++.
T Consensus 51 ~~~~v~~~g~~--~----e~~~~l~~~dv~l~p~~~~~~~~-~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~~~~~ 122 (135)
T PF13692_consen 51 RRPNVRFHGFV--E----ELPEILAAADVGLIPSRFNEGFP-NKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLVANDP 122 (135)
T ss_dssp HHCTEEEE-S---H----HHHHHHHC-SEEEE-BSS-SCC--HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE-TT-H
T ss_pred cCCCEEEcCCH--H----HHHHHHHhCCEEEEEeeCCCcCc-HHHHHHHHhCCCEEECCc-chhhheeecCCeEEECCCH
Confidence 37788898886 3 23456788999987432111111 234445577888887666 211 123344556777
Q ss_pred hHHHHHHHHHh
Q psy12429 182 DVIIDTLCRAL 192 (268)
Q Consensus 182 D~vl~~L~~~L 192 (268)
+++...|.+.+
T Consensus 123 ~~l~~~i~~l~ 133 (135)
T PF13692_consen 123 EELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77776665443
No 214
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=21.36 E-value=2.1e+02 Score=26.74 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=31.3
Q ss_pred hhh-cCCeEEEEccCCccc-c--cccc-------cccC-CCCCCEEEEeeccCCCC-cccchh
Q psy12429 128 DKN-RCDLLIVIGSSLKVR-P--VALI-------PNSL-PPSVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 128 ~~~-~aDlllviGTSl~V~-p--~~~l-------~~~~-~~g~~~i~IN~~~t~~~-~~dl~i 177 (268)
++. ++|++|++|+-.... | +.++ .+.. .+|++++.|++..+... .+|.++
T Consensus 133 di~~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l 195 (421)
T TIGR03129 133 EVKNRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHL 195 (421)
T ss_pred HHhhcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhccee
Confidence 444 799999999986543 2 1111 1112 56789999999887642 355443
No 215
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=20.57 E-value=1.9e+02 Score=25.65 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=53.7
Q ss_pred cCcEEE-cCCCCCHHHHHHHHHhhhcCCeEEEEccCCcc-cccccccccCCCCCCEEEEeeccCCCCcccchhcCCchHH
Q psy12429 107 KPDIVF-FGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKV-RPVALIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVI 184 (268)
Q Consensus 107 rP~Iv~-FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V-~p~~~l~~~~~~g~~~i~IN~~~t~~~~~dl~i~g~aD~v 184 (268)
.+|+|. |- .|+...+.+ ....++..=+|+||+.-. .-+..|.. +.++.++++...-.... +-.-.+
T Consensus 60 ~~DvVid~t--~p~~~~~~~-~~al~~G~~vvigttG~s~~~~~~l~~-aa~~~~v~~s~n~s~g~--------~~~~~l 127 (257)
T PRK00048 60 DADVLIDFT--TPEATLENL-EFALEHGKPLVIGTTGFTEEQLAELEE-AAKKIPVVIAPNFSIGV--------NLLMKL 127 (257)
T ss_pred CCCEEEECC--CHHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHH-HhcCCCEEEECcchHHH--------HHHHHH
Confidence 467665 54 344333333 344556666778874322 22333333 33556655442222111 011224
Q ss_pred HHHHHHHhCCCcchhHHHhhhcCCCCCCceecccccccCCCcccccC-CCchhHHHHHHHHhCCcc
Q psy12429 185 IDTLCRALGESWTGTLLELYNSLPPSVPQILINRERLSHLNFDVELL-GDGDVIIDTLCRALGESW 249 (268)
Q Consensus 185 l~~L~~~LG~~w~~~~~~~~~~~~~~~pqil~n~e~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 249 (268)
+..+...||. |+.++.|. |-+..++.| |.+-..++.++...+++|
T Consensus 128 ~~~aa~~l~~-~d~ei~E~-------------------HH~~K~DaPSGTA~~l~~~i~~~~~~~~ 173 (257)
T PRK00048 128 AEKAAKYLGD-YDIEIIEA-------------------HHRHKVDAPSGTALKLAEAIAEARGRDL 173 (257)
T ss_pred HHHHHHhcCC-CCEEEEEc-------------------cCCCCCCCCCHHHHHHHHHHHHhhcccc
Confidence 4445556664 66654333 445555555 445556666666666555
Done!