Query psy12429
Match_columns 268
No_of_seqs 218 out of 1458
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:03:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pki_A NAD-dependent deacetyla 100.0 5E-54 1.7E-58 395.9 7.1 240 2-265 92-343 (355)
2 3glr_A NAD-dependent deacetyla 100.0 1.2E-49 4.2E-54 359.7 13.9 175 2-205 93-274 (285)
3 4iao_A NAD-dependent histone d 100.0 2E-48 6.9E-53 370.4 17.2 194 2-199 253-459 (492)
4 3k35_A NAD-dependent deacetyla 100.0 5.3E-48 1.8E-52 352.7 8.0 208 2-228 92-311 (318)
5 2hjh_A NAD-dependent histone d 100.0 1.3E-46 4.6E-51 350.0 16.3 194 2-199 115-321 (354)
6 1yc5_A NAD-dependent deacetyla 100.0 1.3E-46 4.3E-51 334.4 14.0 167 2-194 77-245 (246)
7 1q1a_A HST2 protein; ternary c 100.0 3.2E-46 1.1E-50 339.0 16.1 176 2-205 90-288 (289)
8 1j8f_A SIRT2, sirtuin 2, isofo 100.0 6E-46 2E-50 341.6 16.5 176 2-205 113-313 (323)
9 1ma3_A SIR2-AF2, transcription 100.0 1.2E-45 4.2E-50 329.3 13.1 166 2-193 79-247 (253)
10 1q14_A HST2 protein; histone d 100.0 3.9E-45 1.4E-49 340.2 16.2 177 2-206 98-297 (361)
11 1m2k_A Silent information regu 100.0 8.6E-45 2.9E-49 323.2 11.7 163 2-193 77-241 (249)
12 3riy_A NAD-dependent deacetyla 100.0 7E-45 2.4E-49 327.6 8.7 174 2-189 86-272 (273)
13 3u31_A SIR2A, transcriptional 100.0 4.6E-44 1.6E-48 324.3 10.4 158 2-186 110-274 (290)
14 1s5p_A NAD-dependent deacetyla 100.0 6.2E-44 2.1E-48 315.1 8.3 160 2-192 68-230 (235)
15 4iao_A NAD-dependent histone d 98.1 2.7E-06 9.2E-11 81.3 6.1 77 172-248 369-457 (492)
16 3glr_A NAD-dependent deacetyla 97.8 1.1E-05 3.7E-10 72.5 3.2 57 191-247 203-265 (285)
17 2hjh_A NAD-dependent histone d 97.4 0.0002 6.8E-09 66.1 5.9 77 172-248 231-319 (354)
18 1j8f_A SIRT2, sirtuin 2, isofo 96.7 0.0019 6.5E-08 58.8 5.9 76 172-247 196-304 (323)
19 3k35_A NAD-dependent deacetyla 95.5 0.014 4.9E-07 52.9 5.0 95 172-266 182-293 (318)
20 1q1a_A HST2 protein; ternary c 95.0 0.01 3.5E-07 53.0 2.6 60 192-253 218-283 (289)
21 1q14_A HST2 protein; histone d 94.3 0.021 7.3E-07 52.6 3.0 56 192-247 226-287 (361)
22 2c31_A Oxalyl-COA decarboxylas 92.8 0.1 3.5E-06 50.4 5.1 67 127-193 268-338 (568)
23 4feg_A Pyruvate oxidase; carba 92.2 0.2 6.8E-06 48.8 6.4 66 125-193 270-338 (603)
24 2q28_A Oxalyl-COA decarboxylas 92.1 0.15 5.1E-06 49.1 5.2 66 127-193 266-334 (564)
25 3pki_A NAD-dependent deacetyla 92.0 0.16 5.3E-06 46.7 4.9 90 172-261 182-288 (355)
26 2pgn_A Cyclohexane-1,2-dione h 91.8 0.33 1.1E-05 47.1 7.3 67 125-193 265-334 (589)
27 1q6z_A BFD, BFDC, benzoylforma 91.7 0.23 7.8E-06 47.4 6.0 70 124-193 259-330 (528)
28 2uz1_A Benzaldehyde lyase; thi 90.7 0.33 1.1E-05 46.7 6.0 65 129-193 267-334 (563)
29 3hww_A 2-succinyl-5-enolpyruvy 90.3 0.18 6.3E-06 48.5 3.8 74 125-199 272-348 (556)
30 1ybh_A Acetolactate synthase, 89.5 0.52 1.8E-05 45.6 6.4 68 125-193 272-342 (590)
31 2iht_A Carboxyethylarginine sy 89.4 0.55 1.9E-05 45.3 6.4 67 125-193 281-351 (573)
32 3eya_A Pyruvate dehydrogenase 89.3 0.45 1.5E-05 45.6 5.7 62 126-193 260-324 (549)
33 1ozh_A ALS, acetolactate synth 89.0 0.58 2E-05 45.1 6.3 65 126-193 269-336 (566)
34 1o97_D Electron transferring f 88.7 0.3 1E-05 44.2 3.7 57 132-192 260-318 (320)
35 1efv_A Electron transfer flavo 87.5 0.59 2E-05 42.1 4.9 59 131-193 253-313 (315)
36 3lq1_A 2-succinyl-5-enolpyruvy 87.3 0.6 2E-05 45.1 5.2 65 128-193 286-353 (578)
37 1efp_A ETF, protein (electron 87.1 0.56 1.9E-05 42.1 4.5 58 131-192 248-307 (307)
38 1pno_A NAD(P) transhydrogenase 85.6 1.9 6.4E-05 35.4 6.4 71 122-192 89-179 (180)
39 1v5e_A Pyruvate oxidase; oxido 85.0 1.4 4.9E-05 42.6 6.5 65 125-193 263-331 (590)
40 2pan_A Glyoxylate carboligase; 84.4 0.91 3.1E-05 44.1 4.8 67 125-192 287-356 (616)
41 2fsv_C NAD(P) transhydrogenase 83.5 2.1 7.2E-05 35.8 5.9 84 109-192 96-202 (203)
42 1djl_A Transhydrogenase DIII; 83.1 2 7E-05 36.0 5.7 85 109-193 95-202 (207)
43 2x7j_A 2-succinyl-5-enolpyruvy 82.5 1.3 4.4E-05 43.0 5.0 65 127-193 306-373 (604)
44 2k5c_A Uncharacterized protein 82.5 1.2 4.2E-05 32.1 3.5 54 45-130 7-79 (95)
45 1d4o_A NADP(H) transhydrogenas 82.3 2 7E-05 35.3 5.3 72 122-193 88-179 (184)
46 2bru_C NAD(P) transhydrogenase 81.3 1.6 5.4E-05 35.9 4.3 67 125-191 99-185 (186)
47 1t9b_A Acetolactate synthase, 80.4 1.2 3.9E-05 44.2 3.9 67 127-193 352-429 (677)
48 2vk8_A Pyruvate decarboxylase 75.9 3.9 0.00013 39.1 6.0 66 125-192 272-337 (563)
49 1yc5_A NAD-dependent deacetyla 73.1 1.2 4E-05 38.5 1.4 56 192-247 187-245 (246)
50 1ovm_A Indole-3-pyruvate decar 71.6 5.5 0.00019 37.9 5.9 64 125-190 270-333 (552)
51 2wvg_A PDC, pyruvate decarboxy 69.6 5.8 0.0002 37.9 5.6 66 126-193 271-336 (568)
52 2vbi_A Pyruvate decarboxylase; 69.4 6.2 0.00021 37.7 5.7 66 126-193 271-336 (566)
53 1s5p_A NAD-dependent deacetyla 68.8 2.2 7.6E-05 36.5 2.2 55 192-246 174-231 (235)
54 3cf4_G Acetyl-COA decarboxylas 64.5 3.8 0.00013 32.9 2.7 40 127-168 103-144 (170)
55 2vbf_A Branched-chain alpha-ke 60.1 5.5 0.00019 38.1 3.4 67 125-193 289-355 (570)
56 6rxn_A Rubredoxin; electron tr 57.2 3.8 0.00013 26.2 1.1 33 44-79 2-37 (46)
57 3na7_A HP0958; flagellar bioge 56.5 12 0.00041 32.2 4.6 38 36-79 192-229 (256)
58 1m2k_A Silent information regu 54.4 2.8 9.5E-05 36.2 0.2 61 192-254 184-247 (249)
59 2lcq_A Putative toxin VAPC6; P 48.8 9 0.00031 30.5 2.4 25 46-80 132-156 (165)
60 2nxw_A Phenyl-3-pyruvate decar 47.3 20 0.00068 34.2 5.0 44 125-169 283-326 (565)
61 2gmg_A Hypothetical protein PF 46.3 6.6 0.00023 29.5 1.1 28 44-80 65-92 (105)
62 2vpz_A Thiosulfate reductase; 44.0 17 0.00057 36.1 4.0 50 128-177 196-250 (765)
63 1ma3_A SIR2-AF2, transcription 41.3 7.5 0.00026 33.5 0.8 55 192-246 190-247 (253)
64 1ytl_A Acetyl-COA decarboxylas 41.3 6.4 0.00022 32.1 0.4 36 130-166 107-144 (174)
65 4ayb_P DNA-directed RNA polyme 37.9 3.9 0.00013 26.3 -1.2 29 45-79 2-30 (48)
66 1lko_A Rubrerythrin all-iron(I 36.7 14 0.00047 30.4 1.7 25 44-79 153-178 (191)
67 2e7z_A Acetylene hydratase AHY 34.9 12 0.00043 36.7 1.4 50 128-177 157-211 (727)
68 2kdx_A HYPA, hydrogenase/ureas 34.3 21 0.0007 26.9 2.2 25 46-80 73-98 (119)
69 1h0h_A Formate dehydrogenase ( 33.1 20 0.00067 36.9 2.5 50 128-177 181-234 (977)
70 3riy_A NAD-dependent deacetyla 33.1 33 0.0011 29.7 3.7 70 172-241 188-271 (273)
71 2xig_A Ferric uptake regulatio 32.0 52 0.0018 25.5 4.4 45 5-58 65-111 (150)
72 1mzb_A Ferric uptake regulatio 31.9 49 0.0017 25.1 4.2 45 5-58 57-103 (136)
73 3l5o_A Uncharacterized protein 31.0 14 0.00049 32.3 0.9 43 124-166 179-221 (270)
74 1twf_L ABC10-alpha, DNA-direct 30.3 22 0.00076 24.6 1.6 27 45-80 27-53 (70)
75 2h1q_A Hypothetical protein; Z 30.2 15 0.00052 32.1 0.9 42 125-166 180-221 (270)
76 4fyk_A Deoxyribonucleoside 5'- 29.9 27 0.00093 27.8 2.3 48 120-167 57-104 (152)
77 1yuz_A Nigerythrin; rubrythrin 29.1 31 0.0011 28.6 2.7 25 43-79 168-193 (202)
78 2v3b_B Rubredoxin 2, rubredoxi 29.0 22 0.00074 23.4 1.3 15 44-58 1-15 (55)
79 3a43_A HYPD, hydrogenase nicke 27.1 25 0.00087 27.4 1.7 23 38-60 62-84 (139)
80 2iv2_X Formate dehydrogenase H 26.9 21 0.00071 35.1 1.4 51 127-177 162-216 (715)
81 2nap_A Protein (periplasmic ni 25.6 23 0.00078 34.7 1.4 50 128-177 163-218 (723)
82 1kqf_A FDH-N alpha, formate de 25.3 24 0.00083 36.3 1.6 50 128-177 219-273 (1015)
83 3npg_A Uncharacterized DUF364 24.9 27 0.00093 30.0 1.6 41 127-167 160-200 (249)
84 4hl7_A Naprtase, nicotinate ph 24.4 2.2E+02 0.0076 26.5 7.8 80 110-195 320-413 (446)
85 2o03_A Probable zinc uptake re 24.1 99 0.0034 23.1 4.6 45 5-58 49-95 (131)
86 2fe3_A Peroxide operon regulat 23.9 70 0.0024 24.5 3.7 45 5-58 60-105 (145)
87 3dnf_A ISPH, LYTB, 4-hydroxy-3 23.7 98 0.0033 27.4 5.0 57 108-165 184-243 (297)
88 2w57_A Ferric uptake regulatio 23.6 52 0.0018 25.5 3.0 45 5-58 56-102 (150)
89 1ef4_A Subunit N, DNA-directed 23.4 40 0.0014 22.2 1.8 23 45-67 2-26 (55)
90 3ml1_A NAPA, periplasmic nitra 23.3 42 0.0014 33.6 2.9 66 127-192 174-248 (802)
91 2gnr_A Conserved hypothetical 23.0 37 0.0013 26.6 1.9 28 41-80 42-69 (145)
92 1dx8_A Rubredoxin; electron tr 22.7 35 0.0012 23.5 1.5 16 43-58 4-19 (70)
93 3h75_A Periplasmic sugar-bindi 22.3 1.7E+02 0.006 24.9 6.5 54 113-169 41-98 (350)
94 3irb_A Uncharacterized protein 22.0 40 0.0014 26.4 1.9 27 42-80 43-69 (145)
95 3pwf_A Rubrerythrin; non heme 21.8 55 0.0019 26.3 2.8 24 45-79 137-160 (170)
96 1ti6_A Pyrogallol hydroxytrans 21.8 30 0.001 34.9 1.4 49 128-176 205-263 (875)
97 2kn9_A Rubredoxin; metalloprot 21.7 33 0.0011 24.5 1.2 15 44-58 25-39 (81)
98 1vd4_A Transcription initiatio 21.3 75 0.0026 20.0 3.0 38 41-80 9-47 (62)
99 2epq_A POZ-, at HOOK-, and zin 21.0 1.1E+02 0.0037 17.3 3.5 38 40-79 4-45 (45)
100 2ivf_A Ethylbenzene dehydrogen 20.9 50 0.0017 33.8 2.8 50 128-177 243-296 (976)
101 3mwm_A ZUR, putative metal upt 20.3 88 0.003 23.8 3.6 45 5-58 52-99 (139)
102 3eyy_A Putative iron uptake re 20.2 63 0.0022 24.9 2.8 45 5-58 56-102 (145)
No 1
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=5e-54 Score=395.91 Aligned_cols=240 Identities=23% Similarity=0.338 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeCCCCceechHHHHHHHhh-CCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVFQ-QRIPLCPSPAC 78 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~~~~C 78 (268)
+++|++|++|+++|++.+||||||||||++||+ ++|+|||||++..+|++|++.|.++.+...+.. ...+.|. .|
T Consensus 92 n~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~--~~ 169 (355)
T 3pki_A 92 TQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCT--VA 169 (355)
T ss_dssp CHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCCSSCEEEEECC--CC
T ss_pred CHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhcccCCCCCccc--cc
Confidence 689999999999999999999999999999998 589999999999999999999876543211100 0113454 33
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CC
Q psy12429 79 LSSPTSSDISVPAGESSSLPPTP-SRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PP 156 (268)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~ 156 (268)
. .++|+ |+|.|||+||||||++|...++.+.+++++||++|||||||+|+|+++|+..+ .+
T Consensus 170 ~-----------------~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~ 232 (355)
T 3pki_A 170 K-----------------ARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRR 232 (355)
T ss_dssp C-----------------BTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHT
T ss_pred c-----------------ccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhc
Confidence 2 11222 67999999999999999998999999999999999999999999999998774 67
Q ss_pred CCCEEEEeeccCCCC-cccchhcCCchHHHHHHHHHhCC---Ccchh--HHH-hhhcCCCCCCceecccccccCCCcccc
Q psy12429 157 SVPQILINRERLSHL-NFDVELLGDGDVIIDTLCRALGE---SWTGT--LLE-LYNSLPPSVPQILINRERLSHLNFDVE 229 (268)
Q Consensus 157 g~~~i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~LG~---~w~~~--~~~-~~~~~~~~~pqil~n~e~~~~~~~~~~ 229 (268)
|+++|+||+++|..+ .+|+.|+|+|+++|+.|++.||+ .|..+ +++ .+.....++|++...+|.....|.++
T Consensus 233 G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (355)
T 3pki_A 233 GGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVLERALPPLPRPPTPKLEPKEESPTRINGSI- 311 (355)
T ss_dssp TCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHTTCCCCCCCSCEEECSCCSCCCBCCBCCC---------------
T ss_pred CCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHHHHhCCCCCCCCCCceecccCCCcCCCCCccCCccccCccccCCCC-
Confidence 899999999999875 68999999999999999999995 35553 222 24445566888888888887888777
Q ss_pred cCCCchhHHHHHHHHhCCcccccccccccCCCcccc
Q psy12429 230 LLGDGDVIIDTLCRALGESWTVRLKIEKVSSPREHL 265 (268)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 265 (268)
+...+ +|+|.++++++++++||||++||.+|+
T Consensus 312 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (355)
T 3pki_A 312 -PAGPK---QEPCAQHNGSEPASPKRERPTSPAPHR 343 (355)
T ss_dssp ------------------------------------
T ss_pred -CCCCC---CCCccccCCCCCCCccccCCCCCCCCC
Confidence 66666 999999999999999999999999997
No 2
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=1.2e-49 Score=359.68 Aligned_cols=175 Identities=44% Similarity=0.790 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
+++|++|++|+++|++.++|||||||||++||+ ++|+|||||+++.+|++|++.|+.+++...+....+|.|+ .|+
T Consensus 93 n~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~--~Cg 170 (285)
T 3glr_A 93 NVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVPRCP--VCT 170 (285)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHHTTCCCBCT--TTC
T ss_pred CHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhhcCCCCCCC--CCC
Confidence 689999999999999999999999999999996 6999999999999999999999988777666666789999 898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCC
Q psy12429 80 SSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVP 159 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~ 159 (268)
|.|||+||||||++|..++. +.+++.+||++|||||||+|+|++.|+..++.+++
T Consensus 171 ------------------------g~lrP~IV~FGE~lp~~~~~-~~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~ 225 (285)
T 3glr_A 171 ------------------------GVVKPDIVFFGEPLPQRFLL-HVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVP 225 (285)
T ss_dssp ------------------------CBEEEEECCTTSBCCGGGGG-HHHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSC
T ss_pred ------------------------CccCCcEEEeCCcCCHHHHH-HHHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCc
Confidence 99999999999999997664 46678999999999999999999999988888899
Q ss_pred EEEEeeccCC-----CCcccchhcCCchHHHHHHHHHhCCCcchhHHHhhh
Q psy12429 160 QILINRERLS-----HLNFDVELLGDGDVIIDTLCRALGESWTGTLLELYN 205 (268)
Q Consensus 160 ~i~IN~~~t~-----~~~~dl~i~g~aD~vl~~L~~~LG~~w~~~~~~~~~ 205 (268)
+|+||+++++ ...+|+.+.|+|++++++|++.|| |+.++.+++.
T Consensus 226 ~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lg--w~~el~~~~~ 274 (285)
T 3glr_A 226 RLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLG--WTEEMRDLVQ 274 (285)
T ss_dssp EEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred EEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhC--CHHHHHHHHH
Confidence 9999999986 236899999999999999999999 9999888865
No 3
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-48 Score=370.38 Aligned_cols=194 Identities=46% Similarity=0.801 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
+++|++|++|+++|++.++|||||||||++||+ ++|+|||||+++.+|++|++.|+++.+...+....+|.|+ .|+
T Consensus 253 n~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~~P~Cp--~Cg 330 (492)
T 4iao_A 253 SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCP--YCY 330 (492)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTCCCBCT--TTH
T ss_pred CHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccCCCCCc--ccc
Confidence 579999999999999999999999999999997 6999999999999999999999988776666667789999 996
Q ss_pred C----------CCCCCCCCCCCCCCCCCCCCC-CCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccc
Q psy12429 80 S----------SPTSSDISVPAGESSSLPPTP-SRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVA 148 (268)
Q Consensus 80 ~----------~~~~~~~~~~~~~~~~~~~~~-~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~ 148 (268)
. ..+..+.......+...+.|. |+|.|||+||||||++|.++++++.+++++||++|||||||+|+|++
T Consensus 331 ~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTSL~VyPaA 410 (492)
T 4iao_A 331 KKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVS 410 (492)
T ss_dssp HHHHHHSTTCCCCC--------CCTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCCCCEETGG
T ss_pred cccccccccccccccccccccccccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccCCCccchh
Confidence 1 000011110001112234443 78999999999999999998889888999999999999999999999
Q ss_pred cccccCCCCCCEEEEeeccCCCCcccchhcCCchHHHHHHHHHhCCCcchh
Q psy12429 149 LIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCRALGESWTGT 199 (268)
Q Consensus 149 ~l~~~~~~g~~~i~IN~~~t~~~~~dl~i~g~aD~vl~~L~~~LG~~w~~~ 199 (268)
+|+..++.++++|+||++++..+.+|+.+.|+||++++.|++.|| |+.|
T Consensus 411 ~Lv~~a~~~~p~ViIN~ept~~~~~Dl~l~G~cdevv~~L~~~LG--w~ip 459 (492)
T 4iao_A 411 EIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCG--WTIP 459 (492)
T ss_dssp GHHHHSBTTSCEEEEESSCCTTSCCSEEEESCHHHHHHHHHHHTT--CCCC
T ss_pred hHHHHHhcCCcEEEEcCCCCCCCCccEEEeCCHHHHHHHHHHHhC--CCCC
Confidence 999888888999999999999888999999999999999999999 7775
No 4
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-48 Score=352.71 Aligned_cols=208 Identities=23% Similarity=0.362 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeCCCCceechHHHHHHHhh-CCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVFQ-QRIPLCPSPAC 78 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~~~~C 78 (268)
+++|++|++|+++|++.+||||||||||++||+ ++|+|||||+++.+|++|++.|.++.+...+.. ...|.|+ .|
T Consensus 92 n~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~p~~~~C~--~~ 169 (318)
T 3k35_A 92 TQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCT--VA 169 (318)
T ss_dssp CHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCCSSCEEEEECC--C-
T ss_pred CHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhcccCCCCCcCc--cc
Confidence 689999999999999999999999999999999 589999999999999999999876543211100 0113454 32
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CC
Q psy12429 79 LSSPTSSDISVPAGESSSLPPTP-SRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PP 156 (268)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~ 156 (268)
. .++|+ |+|.|||+||||||++|...++.+.+++++||++|||||||+|+|+++|+..+ .+
T Consensus 170 ~-----------------~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~ 232 (318)
T 3k35_A 170 K-----------------ARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRR 232 (318)
T ss_dssp ------------------------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHT
T ss_pred c-----------------cccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhc
Confidence 1 11222 67999999999999999998999999999999999999999999999998764 67
Q ss_pred CCCEEEEeeccCCCC-cccchhcCCchHHHHHHHHHhCC---Ccchh-HH-Hh-hhcCCCCCCceecccccccCCCccc
Q psy12429 157 SVPQILINRERLSHL-NFDVELLGDGDVIIDTLCRALGE---SWTGT-LL-EL-YNSLPPSVPQILINRERLSHLNFDV 228 (268)
Q Consensus 157 g~~~i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~LG~---~w~~~-~~-~~-~~~~~~~~pqil~n~e~~~~~~~~~ 228 (268)
|+++++||+++|..+ .+|+.|+|+|+++|+.|++.||+ .|..+ +. +. +....+++|++...+|....+|.++
T Consensus 233 G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
T 3k35_A 233 GGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRPPTPKLEPKEESPTRINGSI 311 (318)
T ss_dssp TCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCCCCSCBCCCSCCSCCCCCCCCC---------------
T ss_pred CCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCCCCCCceeeccCCCCCCCCCCCCCccccCCcccCCCC
Confidence 899999999999875 69999999999999999999995 36664 33 23 5556677999999999888888776
No 5
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-46 Score=350.03 Aligned_cols=194 Identities=46% Similarity=0.799 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
+++|++|++|+++|++.++|||||||||++||+ ++|+|||||++.++|++|+..|+++.+...+....+|.|+ .|+
T Consensus 115 n~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~P~Cp--~C~ 192 (354)
T 2hjh_A 115 SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCP--YCY 192 (354)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHTTCCCBCT--TTH
T ss_pred CHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhccCCCcCc--ccc
Confidence 689999999999999999999999999999997 6999999999999999999999888776666556789999 996
Q ss_pred CC-------C---CCCCCCCCCCCCCCCCC-CCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccc
Q psy12429 80 SS-------P---TSSDISVPAGESSSLPP-TPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVA 148 (268)
Q Consensus 80 ~~-------~---~~~~~~~~~~~~~~~~~-~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~ 148 (268)
.. . ...+..++......-+. ++|+|.|||+||||||++|...++.+.+++++||++|||||||+|+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSL~V~Paa 272 (354)
T 2hjh_A 193 KKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVS 272 (354)
T ss_dssp HHHHHHCCC-----------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCCCCEETGG
T ss_pred ccccccccccccccccccccccccccccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCCEEEEECcCCCchhHH
Confidence 20 0 00000010000001112 3378999999999999999998888899999999999999999999999
Q ss_pred cccccCCCCCCEEEEeeccCCCCcccchhcCCchHHHHHHHHHhCCCcchh
Q psy12429 149 LIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCRALGESWTGT 199 (268)
Q Consensus 149 ~l~~~~~~g~~~i~IN~~~t~~~~~dl~i~g~aD~vl~~L~~~LG~~w~~~ 199 (268)
+|+..++.++++|+||++++..+.+|+.|.|+|+++|+.|++.|| |+.|
T Consensus 273 ~lv~~~~~~~~~v~IN~~~t~~~~~dl~i~g~~~~vl~~L~~~lg--w~~p 321 (354)
T 2hjh_A 273 EIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCG--WTIP 321 (354)
T ss_dssp GHHHHSCTTSCEEEEESSCCTTSCCSEEEESCHHHHHHHHHHHHT--CCCC
T ss_pred HHHHHHhcCCcEEEEcCCCCCCCCcCEEEeCCHHHHHHHHHHHcC--CCCc
Confidence 999888778999999999998778999999999999999999999 7765
No 6
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=1.3e-46 Score=334.43 Aligned_cols=167 Identities=29% Similarity=0.422 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|++|+++|++.++|||||||||++||+++|+|+|||++..+|++|++.|+++++...+.....|.|+ .|+
T Consensus 77 n~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~--~Cg-- 152 (246)
T 1yc5_A 77 NLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCD--DCN-- 152 (246)
T ss_dssp CHHHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHTTTCSSCBCT--TTC--
T ss_pred CHHHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHhccCCCCCCC--CCC--
Confidence 6899999999999999999999999999999999999999999999999999999988776555444579999 998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCCE
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVPQ 160 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~~ 160 (268)
|.|||+||||||++|++.++.+.+++++||++|||||||+|+|+++|+..+ .+|+++
T Consensus 153 ----------------------g~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~ 210 (246)
T 1yc5_A 153 ----------------------SLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKL 210 (246)
T ss_dssp ----------------------CBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEE
T ss_pred ----------------------CccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeE
Confidence 999999999999999988888999999999999999999999999998775 468999
Q ss_pred EEEeeccCCCC-cccchhcCCchHHHHHHHHHhCC
Q psy12429 161 ILINRERLSHL-NFDVELLGDGDVIIDTLCRALGE 194 (268)
Q Consensus 161 i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~LG~ 194 (268)
|+||++++..+ .+|+.|.|+++++|++|++.||.
T Consensus 211 i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg~ 245 (246)
T 1yc5_A 211 VIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245 (246)
T ss_dssp EEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 99999999865 58999999999999999999994
No 7
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=3.2e-46 Score=338.99 Aligned_cols=176 Identities=35% Similarity=0.629 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeCCCCceechHHHHHHHhh---CCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADVFQ---QRIPLCPSP 76 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~---~~~p~C~~~ 76 (268)
+++|++|++|+++|++.+||||||||||++||+ ++|+|||||++..+|++|++.|+++.+...+.. ..+|.|+
T Consensus 90 n~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~-- 167 (289)
T 1q1a_A 90 SKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD-- 167 (289)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCT--
T ss_pred CHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhhccCCCCccCC--
Confidence 689999999999999999999999999999998 489999999999999999999998887766633 2579999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHH-------------HHhhhcCCeEEEEccCCc
Q psy12429 77 ACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAM-------------TLDKNRCDLLIVIGSSLK 143 (268)
Q Consensus 77 ~C~~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~-------------~~~~~~aDlllviGTSl~ 143 (268)
.|+ |.|||+||||||++|+..++.+ .+.+.+||++|||||||+
T Consensus 168 ~Cg------------------------g~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~DlllviGTSl~ 223 (289)
T 1q1a_A 168 VCG------------------------ELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLA 223 (289)
T ss_dssp TTC------------------------CBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEESCCCC
T ss_pred CCC------------------------CEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCEEEEEccCCC
Confidence 898 9999999999999999764433 244789999999999999
Q ss_pred ccccccccccCCCCCCEEEEeeccCC----CC-cccchhcCCchHHHHHHHHHhCCCcchhHHHhhh
Q psy12429 144 VRPVALIPNSLPPSVPQILINRERLS----HL-NFDVELLGDGDVIIDTLCRALGESWTGTLLELYN 205 (268)
Q Consensus 144 V~p~~~l~~~~~~g~~~i~IN~~~t~----~~-~~dl~i~g~aD~vl~~L~~~LG~~w~~~~~~~~~ 205 (268)
|+|+++|+..+++|+++|+||+++++ .. .+|+.|.|+++++|++|++.|| |+.++.++.+
T Consensus 224 V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~--~~~~~~~~~~ 288 (289)
T 1q1a_A 224 VYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG--WQEDFEKILT 288 (289)
T ss_dssp EETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT--CHHHHHHHHT
T ss_pred hhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcC--CHHHHHHHhh
Confidence 99999999888789999999999986 23 5899999999999999999999 9998887754
No 8
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=6e-46 Score=341.63 Aligned_cols=176 Identities=41% Similarity=0.739 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCC--CCeEeeccccceeeeCC--CCceechHHHHHHHhhCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTR--CGHRVSAEAIKADVFQQRIPLCPSPA 77 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~--C~~~~~~~~~~~~~~~~~~p~C~~~~ 77 (268)
+++|++|++|+++|++.+||||||||||++||+ ++|+|||||++..+|++ |++.|+++++...+....+|.|+ .
T Consensus 113 n~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~~~~~P~C~--~ 190 (323)
T 1j8f_A 113 TICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCE--D 190 (323)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHHTTCCCBCT--T
T ss_pred CHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhccCCCCCCc--C
Confidence 689999999999999999999999999999996 69999999999999999 99999988877666666789999 9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCC
Q psy12429 78 CLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPS 157 (268)
Q Consensus 78 C~~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g 157 (268)
|+ |.|||+||||||++|++.++.+.+++++||++|||||||+|+|+++|+..++++
T Consensus 191 Cg------------------------g~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~ 246 (323)
T 1j8f_A 191 CQ------------------------SLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLS 246 (323)
T ss_dssp TC------------------------CBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTT
T ss_pred CC------------------------CccCCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcC
Confidence 98 999999999999999998888888999999999999999999999999888777
Q ss_pred CCEEEEeeccCCCC---------------------cccchhcCCchHHHHHHHHHhCCCcchhHHHhhh
Q psy12429 158 VPQILINRERLSHL---------------------NFDVELLGDGDVIIDTLCRALGESWTGTLLELYN 205 (268)
Q Consensus 158 ~~~i~IN~~~t~~~---------------------~~dl~i~g~aD~vl~~L~~~LG~~w~~~~~~~~~ 205 (268)
+++|+||++++... .+|+.|.|+|++++..|++.|| |+.++.++..
T Consensus 247 ~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L~~~lg--w~~~l~~l~~ 313 (323)
T 1j8f_A 247 TPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLG--WKKELEDLVR 313 (323)
T ss_dssp CCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHHHHHHHHHHcC--CchHHHHHHH
Confidence 88899999998743 2688999999999999999999 9999888765
No 9
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=1.2e-45 Score=329.32 Aligned_cols=166 Identities=31% Similarity=0.481 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|++|+++|++.+||||||||||++||+++|+|+|||++..+|+.|++.|+++++...+....+|.|+ .|+
T Consensus 79 n~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~--~Cg-- 154 (253)
T 1ma3_A 79 NPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCR--KCG-- 154 (253)
T ss_dssp CHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEEGGGTHHHHHTTCCCCCT--TTC--
T ss_pred CHHHHHHHHHHhcCCCeEEEeccccccHhHhCCCCEEEeCCCcCeeeeCCCCCcCcHHHHHHHhccCCCCCCC--CCC--
Confidence 6899999999999999999999999999999999999999999999999999999887766555555689999 998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-cccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCC
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRG-VMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVP 159 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g-~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~ 159 (268)
| .|||+||||||++|+..++.+.+++++||++|||||||+|+|+++|+..+ .+|++
T Consensus 155 ----------------------g~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~ 212 (253)
T 1ma3_A 155 ----------------------SYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAK 212 (253)
T ss_dssp ----------------------CSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCE
T ss_pred ----------------------CccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCe
Confidence 7 99999999999999988888899999999999999999999999998775 46899
Q ss_pred EEEEeeccCCCC-cccchhcCCchHHHHHHHHHhC
Q psy12429 160 QILINRERLSHL-NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 160 ~i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+|+||++++..+ .+|+.|.|+++++|++|++.|.
T Consensus 213 ~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 213 MIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVK 247 (253)
T ss_dssp EEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHHH
Confidence 999999999865 5899999999999999987763
No 10
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=3.9e-45 Score=340.16 Aligned_cols=177 Identities=34% Similarity=0.621 Sum_probs=155.8
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCC--CeEeeccccceeeeCCCCceechHHHHHHHhh---CCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIE--NVIECHGSFATASCTRCGHRVSAEAIKADVFQ---QRIPLCPSP 76 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~---~~~p~C~~~ 76 (268)
+++|++|++|+++|++.+||||||||||++||++ +|+|||||++..+|++|++.|+++.+...+.. ..+|.|+
T Consensus 98 n~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp-- 175 (361)
T 1q14_A 98 SKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD-- 175 (361)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHHTTSSSCSCCCBCT--
T ss_pred CHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHHHHhhcccCCCCCCc--
Confidence 6899999999999999999999999999999984 89999999999999999999998887665533 2369999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHH-------------hhhcCCeEEEEccCCc
Q psy12429 77 ACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTL-------------DKNRCDLLIVIGSSLK 143 (268)
Q Consensus 77 ~C~~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~-------------~~~~aDlllviGTSl~ 143 (268)
.|| |.|||+||||||++|...++.+.+ .+.+||++|||||||+
T Consensus 176 ~Cg------------------------g~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~~~aDllLviGTSl~ 231 (361)
T 1q14_A 176 VCG------------------------ELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLA 231 (361)
T ss_dssp TTC------------------------CBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC--------CCCEEEEESCCCC
T ss_pred CCC------------------------CEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhhhccCCEEEEECCCCC
Confidence 897 999999999999999986655544 4679999999999999
Q ss_pred ccccccccccCCCCCCEEEEeeccCC----C-CcccchhcCCchHHHHHHHHHhCCCcchhHHHhhhc
Q psy12429 144 VRPVALIPNSLPPSVPQILINRERLS----H-LNFDVELLGDGDVIIDTLCRALGESWTGTLLELYNS 206 (268)
Q Consensus 144 V~p~~~l~~~~~~g~~~i~IN~~~t~----~-~~~dl~i~g~aD~vl~~L~~~LG~~w~~~~~~~~~~ 206 (268)
|+|+++|+..+++|+++|+||+++++ . ..+|+.|.|+++++|+.|++.|| |+.++.+++..
T Consensus 232 V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg--~~~~l~~~~~~ 297 (361)
T 1q14_A 232 VYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG--WQEDFEKILTA 297 (361)
T ss_dssp STTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred chhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcC--ChhHHHHHHHh
Confidence 99999999888789999999999985 2 35899999999999999999999 99988887654
No 11
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=8.6e-45 Score=323.18 Aligned_cols=163 Identities=30% Similarity=0.450 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSS 81 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~~ 81 (268)
+++|++|++|+++|++.++|||||||||++||+++|+|+|||++..+|+.|++.|++++. +.....|.|+ .|+
T Consensus 77 n~~H~~La~L~~~g~~~~viTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~---~~~~~~p~C~--~Cg-- 149 (249)
T 1m2k_A 77 NKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESA---PKIPPLPKCD--KCG-- 149 (249)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCSEEETTEEEEEEEESSSSCEEECSSC---CCSSSCCBCS--SSS--
T ss_pred CHHHHHHHHHHhCCCCcEEEECCccchhhhcCCCcEEEecCCcceeEeCCCCCcccchhh---ccCCCCCCCC--CCC--
Confidence 689999999999999999999999999999999999999999999999999998876542 2223468999 897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCCE
Q psy12429 82 PTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVPQ 160 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~~ 160 (268)
|.|||+||||||++|++.++.+.+++++||++|||||||+|+|+++|+..+ .+|+++
T Consensus 150 ----------------------g~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~ 207 (249)
T 1m2k_A 150 ----------------------SLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAI 207 (249)
T ss_dssp ----------------------SBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEE
T ss_pred ----------------------CCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeE
Confidence 999999999999999998888999999999999999999999999998775 568999
Q ss_pred EEEeeccCCCC-cccchhcCCchHHHHHHHHHhC
Q psy12429 161 ILINRERLSHL-NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 161 i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~LG 193 (268)
|+||++++..+ .+|+.|.|+++++|++|++.+.
T Consensus 208 i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 208 IEINPDETPLTPIADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp EEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHHH
Confidence 99999999865 5899999999999999987763
No 12
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=7e-45 Score=327.65 Aligned_cols=174 Identities=29% Similarity=0.494 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHH----cCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLER----HGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPA 77 (268)
Q Consensus 2 ~~~H~~La~L~~----~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~ 77 (268)
+++|++|++|++ +|++.++|||||||||++||+++|+|||||++..+|++|++.|.... .|.|+ .
T Consensus 86 n~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~~~vielHG~~~~~~C~~C~~~~~~~~---------~p~~~--~ 154 (273)
T 3riy_A 86 NAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYK---------SPICP--A 154 (273)
T ss_dssp CHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEECCC---------SSSSG--G
T ss_pred CHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCCCCEEEecCcCCeeEcCCCCCcccccc---------cchhh--h
Confidence 689999999995 69999999999999999999999999999999999999999875321 22232 1
Q ss_pred CCCCC-CC---CCCCCCCCCCCCCCCC--C-CCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccc
Q psy12429 78 CLSSP-TS---SDISVPAGESSSLPPT--P-SRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALI 150 (268)
Q Consensus 78 C~~~~-~~---~~~~~~~~~~~~~~~~--~-~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l 150 (268)
+.... +. .+..++ ....|.| + |+|.|||+||||||++|+..++.+.+++++||++|||||||+|+|+++|
T Consensus 155 ~~~~~~~~~~~~~~~~~---~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl~V~Paa~l 231 (273)
T 3riy_A 155 LSGKGAPEPGTQDASIP---VEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMF 231 (273)
T ss_dssp GTTCCCCSTTCCCCCCC---GGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGH
T ss_pred hhcccCCcccccccccc---cCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCCcchhHHHh
Confidence 11000 00 000000 0123344 2 5699999999999999999899999999999999999999999999999
Q ss_pred ccc-CCCCCCEEEEeeccCCCC-cccchhcCCchHHHHHHH
Q psy12429 151 PNS-LPPSVPQILINRERLSHL-NFDVELLGDGDVIIDTLC 189 (268)
Q Consensus 151 ~~~-~~~g~~~i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~ 189 (268)
+.. ..+|+++++||+++|+.+ .+|+.|.|+++++|++|+
T Consensus 232 ~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 232 APQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred HHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 865 467999999999999975 689999999999999875
No 13
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=4.6e-44 Score=324.27 Aligned_cols=158 Identities=27% Similarity=0.398 Sum_probs=139.4
Q ss_pred CHHHHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHH----HHhhCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKA----DVFQQRIPLCPSPA 77 (268)
Q Consensus 2 ~~~H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~----~~~~~~~p~C~~~~ 77 (268)
+++|++|++|+++|++.+||||||||||++||+++|+|||||++..+|++|++.|+.+++.. .+....+|.|+
T Consensus 110 n~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~~~vielHGs~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~--- 186 (290)
T 3u31_A 110 NNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP--- 186 (290)
T ss_dssp CHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEECCTGGGSTTSSTTTSSSCBCT---
T ss_pred CHHHHHHHHHHHcCCCceEEEechHHHHHHcCCCcEEEecCCcCcceeCCCCCcCChhHhhhcccccccccCCCCCC---
Confidence 68999999999999999999999999999999999999999999999999999987654321 01112356676
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CC
Q psy12429 78 CLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PP 156 (268)
Q Consensus 78 C~~~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~ 156 (268)
|+ |.|||+||||||++|+..++.+.+++++||++|||||||+|+|+++|+..+ .+
T Consensus 187 Cg------------------------g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~ 242 (290)
T 3u31_A 187 CG------------------------GIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKK 242 (290)
T ss_dssp TS------------------------CBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHT
T ss_pred CC------------------------CEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHc
Confidence 65 999999999999999998888888999999999999999999999999875 57
Q ss_pred CCCEEEEeeccCCCC--cccchhcCCchHHHH
Q psy12429 157 SVPQILINRERLSHL--NFDVELLGDGDVIID 186 (268)
Q Consensus 157 g~~~i~IN~~~t~~~--~~dl~i~g~aD~vl~ 186 (268)
|+++|+||+++|+.+ .+|+.|.|++++++.
T Consensus 243 g~~~v~IN~~~t~~~~~~~d~~i~g~a~~vl~ 274 (290)
T 3u31_A 243 KKKIVEINISKTYITNKMSDYHVCAKFSELTK 274 (290)
T ss_dssp TCCEEEEESSCCTTTTTTCSEEEESCGGGHHH
T ss_pred CCEEEEECCCCCCCCCccceEEEECCHHHHHH
Confidence 899999999999865 479999999999876
No 14
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=6.2e-44 Score=315.14 Aligned_cols=160 Identities=24% Similarity=0.337 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHH-cCCcceeEecCccchHhhcCCCCeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 2 YAFDAFIKMLER-HGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 2 ~~~H~~La~L~~-~g~l~~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
+++|++|++|++ .|++.+||||||||||++||+++|+|||||++..+|++|++.|++++ .+.....|.|+ .|+
T Consensus 68 n~~H~~La~L~~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~---~~~~~~~p~c~--~Cg- 141 (235)
T 1s5p_A 68 NAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG---DVTPEDKCHCC--QFP- 141 (235)
T ss_dssp CHHHHHHHHHHHHHGGGEEEEESCCSSHHHHHTCCSCEETTEEEEEEEETTTCCEEECCS---CCCSSCCC---------
T ss_pred CHHHHHHHHHHHhhCCceEEEeccccchhhhcCCCcEEEecCCceEEEeCCCCCcccchh---hccCCCCCCCC--CCC-
Confidence 689999999999 69999999999999999999999999999999999999999887643 12233456666 676
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccCcEEEcCCCCCHHHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCC
Q psy12429 81 SPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVP 159 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~lrP~Iv~FgE~~p~~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~ 159 (268)
|.|||+||||||+ |+ .++++.+++++||++|||||||+|+|+++|+..+ .+|++
T Consensus 142 -----------------------g~lrP~vv~FGE~-p~-~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~ 196 (235)
T 1s5p_A 142 -----------------------APLRPHVVWFGEM-PL-GMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAH 196 (235)
T ss_dssp ------------------------CEEEEECCTTSC-CS-SHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCE
T ss_pred -----------------------CeecCcEEEeCCC-HH-HHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCe
Confidence 9999999999999 75 5778888999999999999999999999999875 46899
Q ss_pred EEEEeeccCCCC-cccchhcCCchHHHHHHHHHh
Q psy12429 160 QILINRERLSHL-NFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 160 ~i~IN~~~t~~~-~~dl~i~g~aD~vl~~L~~~L 192 (268)
+|+||++++..+ .+|+.|.|+++++|++|++.|
T Consensus 197 ~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 197 TVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp EEEEESSSCC---CCSEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCccccEEEeCCHHHHHHHHHHHH
Confidence 999999999865 689999999999999998876
No 15
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.7e-06 Score=81.26 Aligned_cols=77 Identities=30% Similarity=0.529 Sum_probs=63.8
Q ss_pred cccchhcCCc--hHHHHHHHH---------HhCCCcch-hHHHhhhcCCCCCCceecccccccCCCcccccCCCchhHHH
Q psy12429 172 NFDVELLGDG--DVIIDTLCR---------ALGESWTG-TLLELYNSLPPSVPQILINRERLSHLNFDVELLGDGDVIID 239 (268)
Q Consensus 172 ~~dl~i~g~a--D~vl~~L~~---------~LG~~w~~-~~~~~~~~~~~~~pqil~n~e~~~~~~~~~~~~~~~~~~~~ 239 (268)
+-|+++.|+. .+++..+.+ .+|+|++| |..+++...+..+|+++||+++..+..||+.++|+||+++.
T Consensus 369 RPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~~~~Dl~l~G~cdevv~ 448 (492)
T 4iao_A 369 KPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAA 448 (492)
T ss_dssp EESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTTSCCSEEEESCHHHHHH
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCCCCccEEEeCCHHHHHH
Confidence 4577788885 345554433 26999999 78888777788899999999999999999999999999999
Q ss_pred HHHHHhCCc
Q psy12429 240 TLCRALGES 248 (268)
Q Consensus 240 ~~~~~l~~~ 248 (268)
+||++|||.
T Consensus 449 ~L~~~LGw~ 457 (492)
T 4iao_A 449 MVAQKCGWT 457 (492)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHhCCC
Confidence 999999953
No 16
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=97.76 E-value=1.1e-05 Score=72.47 Aligned_cols=57 Identities=33% Similarity=0.418 Sum_probs=50.6
Q ss_pred HhCCCcch-hHHHhhhcCCCCCCceeccccccc-----CCCcccccCCCchhHHHHHHHHhCC
Q psy12429 191 ALGESWTG-TLLELYNSLPPSVPQILINRERLS-----HLNFDVELLGDGDVIIDTLCRALGE 247 (268)
Q Consensus 191 ~LG~~w~~-~~~~~~~~~~~~~pqil~n~e~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (268)
.+|+|++| |...++...+..+|.++||+++.. +..+|+.++|+||+++.+|+++|||
T Consensus 203 viGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lgw 265 (285)
T 3glr_A 203 ILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLGW 265 (285)
T ss_dssp EESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHTC
T ss_pred EeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhCC
Confidence 36999999 787888888888999999999985 3569999999999999999999994
No 17
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0002 Score=66.13 Aligned_cols=77 Identities=30% Similarity=0.502 Sum_probs=60.8
Q ss_pred cccchhcCCch--HHHHHHHH---------HhCCCcch-hHHHhhhcCCCCCCceecccccccCCCcccccCCCchhHHH
Q psy12429 172 NFDVELLGDGD--VIIDTLCR---------ALGESWTG-TLLELYNSLPPSVPQILINRERLSHLNFDVELLGDGDVIID 239 (268)
Q Consensus 172 ~~dl~i~g~aD--~vl~~L~~---------~LG~~w~~-~~~~~~~~~~~~~pqil~n~e~~~~~~~~~~~~~~~~~~~~ 239 (268)
+-|+++.|+.- ..+..+.+ .+|+|++| +..+++...+..+|.++||.++..+-.+|+.+.|+||+++.
T Consensus 231 rPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~~~~dl~i~g~~~~vl~ 310 (354)
T 2hjh_A 231 KPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAA 310 (354)
T ss_dssp EEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTTSCCSEEEESCHHHHHH
T ss_pred CCChhhccccCCHHHHHHHHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCCCCcCEEEeCCHHHHHH
Confidence 34666666652 34444333 36999999 77778777777899999999998877899999999999999
Q ss_pred HHHHHhCCc
Q psy12429 240 TLCRALGES 248 (268)
Q Consensus 240 ~~~~~l~~~ 248 (268)
+|++.|||.
T Consensus 311 ~L~~~lgw~ 319 (354)
T 2hjh_A 311 MVAQKCGWT 319 (354)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHcCCC
Confidence 999999953
No 18
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=96.72 E-value=0.0019 Score=58.82 Aligned_cols=76 Identities=26% Similarity=0.389 Sum_probs=57.4
Q ss_pred cccchhcCCc--hHHHHHHHHH---------hCCCcch-hHHHhhhcCCCCCCceecccccccCCC--------------
Q psy12429 172 NFDVELLGDG--DVIIDTLCRA---------LGESWTG-TLLELYNSLPPSVPQILINRERLSHLN-------------- 225 (268)
Q Consensus 172 ~~dl~i~g~a--D~vl~~L~~~---------LG~~w~~-~~~~~~~~~~~~~pqil~n~e~~~~~~-------------- 225 (268)
+.|+++.|+. ++.+....+. +|+|+.| |...++...+...|.++||.++....+
T Consensus 196 rP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~ 275 (323)
T 1j8f_A 196 KPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMD 275 (323)
T ss_dssp EEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCC
T ss_pred CCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCccccccccccccccc
Confidence 3566666764 3444444333 5999999 777787777777899999998865432
Q ss_pred -------cccccCCCchhHHHHHHHHhCC
Q psy12429 226 -------FDVELLGDGDVIIDTLCRALGE 247 (268)
Q Consensus 226 -------~~~~~~~~~~~~~~~~~~~l~~ 247 (268)
.|+.+.|+|++++.+|++.|||
T Consensus 276 ~~~~~~~~d~~i~gd~~~~l~~L~~~lgw 304 (323)
T 1j8f_A 276 FDSKKAYRDVAWLGECDQGCLALAELLGW 304 (323)
T ss_dssp SSSTTCCSEEEEESCHHHHHHHHHHHTTC
T ss_pred ccccccceeEEEeCCHHHHHHHHHHHcCC
Confidence 5788999999999999999994
No 19
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=95.45 E-value=0.014 Score=52.91 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=67.6
Q ss_pred cccchhcCCc--hHHHHHHHH---------HhCCCcch-hHHHhhhc-CCCCCCceecccccccC-CCcccccCCCchhH
Q psy12429 172 NFDVELLGDG--DVIIDTLCR---------ALGESWTG-TLLELYNS-LPPSVPQILINRERLSH-LNFDVELLGDGDVI 237 (268)
Q Consensus 172 ~~dl~i~g~a--D~vl~~L~~---------~LG~~w~~-~~~~~~~~-~~~~~pqil~n~e~~~~-~~~~~~~~~~~~~~ 237 (268)
+-|+++.|+. ...+....+ .+|+|+.| +...++.. .....+-+.||.++-.. -.+|+.+.|.|+++
T Consensus 182 RPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~ev 261 (318)
T 3k35_A 182 RDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEV 261 (318)
T ss_dssp EECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHH
T ss_pred CCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHH
Confidence 3466777774 233443332 26999999 65555432 22335668899876432 24788889999999
Q ss_pred HHHHHHHhCCc---ccccccccccCCCccccc
Q psy12429 238 IDTLCRALGES---WTVRLKIEKVSSPREHLK 266 (268)
Q Consensus 238 ~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 266 (268)
+.+|+++|||+ |+...-.|+...+.+|.+
T Consensus 262 l~~L~~~Lg~~iP~~~~~~~~e~~~~~~~~~~ 293 (318)
T 3k35_A 262 MTRLMKHLGLEIPAWDGPRVLERALPPLPRPP 293 (318)
T ss_dssp HHHHHHHHTCCCCCCCSCBCCCSCCSCCCCCC
T ss_pred HHHHHHHhCCCCCCCCCCceeeccCCCCCCCC
Confidence 99999999994 999999999998888765
No 20
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=95.01 E-value=0.01 Score=53.01 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=49.3
Q ss_pred hCCCcch-hHHHhhhcCCCCCCceeccccccc-----CCCcccccCCCchhHHHHHHHHhCCcccccc
Q psy12429 192 LGESWTG-TLLELYNSLPPSVPQILINRERLS-----HLNFDVELLGDGDVIIDTLCRALGESWTVRL 253 (268)
Q Consensus 192 LG~~w~~-~~~~~~~~~~~~~pqil~n~e~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (268)
+|+|+.+ |...++...+...|.++||.++.. ...+|+.+.|+|++++.+|.++|| |.+++
T Consensus 218 iGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~--~~~~~ 283 (289)
T 1q1a_A 218 VGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG--WQEDF 283 (289)
T ss_dssp ESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT--CHHHH
T ss_pred EccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcC--CHHHH
Confidence 6999999 777776666668899999998864 235888999999999999999999 55443
No 21
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=94.31 E-value=0.021 Score=52.62 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=47.6
Q ss_pred hCCCcch-hHHHhhhcCCCCCCceeccccccc-----CCCcccccCCCchhHHHHHHHHhCC
Q psy12429 192 LGESWTG-TLLELYNSLPPSVPQILINRERLS-----HLNFDVELLGDGDVIIDTLCRALGE 247 (268)
Q Consensus 192 LG~~w~~-~~~~~~~~~~~~~pqil~n~e~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (268)
+|+|+.| |...++...+..+|.++||.++.. ...+|+.+.|+|++++.+|++.|||
T Consensus 226 iGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~ 287 (361)
T 1q14_A 226 VGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW 287 (361)
T ss_dssp ESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTC
T ss_pred ECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCC
Confidence 6999999 777777666678899999998863 3458889999999999999999995
No 22
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=92.78 E-value=0.1 Score=50.35 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=47.9
Q ss_pred HhhhcCCeEEEEccCCcccccccccccCC-CCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLP-PSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~~l~~~~~-~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+++||++|++||.+.-.........+. .+.++|.|+.++...+ ..++.+.|++..++..|...+.
T Consensus 268 ~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 338 (568)
T 2c31_A 268 FALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALK 338 (568)
T ss_dssp HHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred hhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhh
Confidence 45788999999999986332222222232 4678899998875432 4578899999999999988764
No 23
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=92.24 E-value=0.2 Score=48.81 Aligned_cols=66 Identities=9% Similarity=0.186 Sum_probs=49.2
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+.+||++|++||.+... .+...+..++++|.|+.++...+ ..|+.|.||+..++..|...+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~---~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (603)
T 4feg_A 270 ANEALAQADVVLFVGNNYPFA---EVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVS 338 (603)
T ss_dssp HHHHHHHCSEEEEESCCCTTT---TTTTTTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHhCCEEEEECCCCCcc---cccccCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhh
Confidence 345678999999999998632 22222345678999998876532 4678899999999999988775
No 24
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=92.05 E-value=0.15 Score=49.13 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=46.7
Q ss_pred HhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+++||++|++||.+.-...... ..+..+.++|.|+.++...+ ..++.|.|++..++..|...+.
T Consensus 266 ~~l~~aDlvl~iG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (564)
T 2q28_A 266 FALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELK 334 (564)
T ss_dssp HHHHHCSEEEEESCCCSGGGGGGT-TTSCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred hHhhcCCEEEEECCcccccccccc-cccCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence 457889999999999853222111 12334678889998875432 4678899999999999987663
No 25
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=92.02 E-value=0.16 Score=46.69 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=61.3
Q ss_pred cccchhcCCc--hHHHHHHHH---------HhCCCcch-hHHHhhhcC-CCCCCceecccccccC-CCcccccCCCchhH
Q psy12429 172 NFDVELLGDG--DVIIDTLCR---------ALGESWTG-TLLELYNSL-PPSVPQILINRERLSH-LNFDVELLGDGDVI 237 (268)
Q Consensus 172 ~~dl~i~g~a--D~vl~~L~~---------~LG~~w~~-~~~~~~~~~-~~~~pqil~n~e~~~~-~~~~~~~~~~~~~~ 237 (268)
+-|+++.|+. ...+....+ .+|+|++| +...++... ....+.+.||.++-.. -.+|+.+.|+|+++
T Consensus 182 RPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~ev 261 (355)
T 3pki_A 182 RDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEV 261 (355)
T ss_dssp EECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHH
T ss_pred CCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHH
Confidence 3567777775 333433322 26999999 665554322 2335678899886433 34788889999999
Q ss_pred HHHHHHHhCCc---ccccccccccCCC
Q psy12429 238 IDTLCRALGES---WTVRLKIEKVSSP 261 (268)
Q Consensus 238 ~~~~~~~l~~~---~~~~~~~~~~~~~ 261 (268)
+.+|+++|||. |+...-.|+...|
T Consensus 262 l~~L~~~Lg~~iP~~~~~~~~~~~~~~ 288 (355)
T 3pki_A 262 MTRLMEHLGLEIPAWDGPRVLERALPP 288 (355)
T ss_dssp HHHHHHHTTCCCCCCCSCEEECSCCSC
T ss_pred HHHHHHHhCCCCCCCCCCceecccCCC
Confidence 99999999984 7777766666544
No 26
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.76 E-value=0.33 Score=47.06 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+.+||++|++||.+.-.... + ..+..+.++|.|+.++...+ ..++.|.|++..++..|...+.
T Consensus 265 ~~~~l~~aDlvl~iG~~~~~~~~~-~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (589)
T 2pgn_A 265 ANDMMAAADFVLVLGSRLSDWGIA-Q-GYITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLP 334 (589)
T ss_dssp HHHHHHHCSEEEEESCCCCTTTTT-T-TTTCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGG
T ss_pred HHHHHhhCCEEEEECCCccccccc-c-cccCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhh
Confidence 344677899999999988544332 2 22334678999998875532 4688899999999999987664
No 27
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=91.69 E-value=0.23 Score=47.43 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=51.4
Q ss_pred HHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC--cccchhcCCchHHHHHHHHHhC
Q psy12429 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL--NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 124 ~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~--~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+.++++|++|++|+.+.-.....+...++.+.++|.|+.++...+ ..++.+.|+...++..|...+.
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 330 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE 330 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHhh
Confidence 344567899999999998876655443333345678999998874321 5678899999999999987764
No 28
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=90.68 E-value=0.33 Score=46.71 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=48.4
Q ss_pred hhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 129 KNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 129 ~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.++|++|++||.+.-.....+-...+++.++|.|+.++...+ ..++.|.||+..++..|...+.
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATA 334 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhh
Confidence 6789999999999876554332222233678999998885533 4688899999999999988774
No 29
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.28 E-value=0.18 Score=48.52 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=49.2
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhCCCcchh
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALGESWTGT 199 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG~~w~~~ 199 (268)
+.+.+.+||++|++||.+.-.+...+...++. .++|.|+.++...+ ..++.|.||+..++..|.......|...
T Consensus 272 ~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~~~~w~~~ 348 (556)
T 3hww_A 272 ATSELQQAQIVVQLGSSLTGKRLLQWQASCEP-EEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVE 348 (556)
T ss_dssp HHHHHTTCSEEEEESBCCCCHHHHHHHHHCCC-SEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHSCCCCCCCCCSS
T ss_pred hhhcccCCCEEEEcCCCcccHHHHHHHhcCCC-CeEEEECCCCccCCCCCCceEEEEcCHHHHHHhcccccchHHHHH
Confidence 44567899999999999854444333333332 37888988875533 4678899999998887643222346543
No 30
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=89.52 E-value=0.52 Score=45.65 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=48.3
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+.+||++|++||.+.-.-...+ ..+..+.++|.|+.++...+ ..++.|.|++..++..|...+.
T Consensus 272 ~~~~l~~aDlvl~iG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 342 (590)
T 1ybh_A 272 ANYAVEHSDLLLAFGVRFDDRVTGKL-EAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLE 342 (590)
T ss_dssp HHHHHHHCSEEEEESCCCCHHHHSSG-GGTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEcCCCCccccCcc-cccCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 34567899999999998853222222 12334668899999886543 4688899999999999987663
No 31
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=89.38 E-value=0.55 Score=45.28 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=48.7
Q ss_pred HHHhhhcCCeEEEEccC-CcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSS-LKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTS-l~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.++++|++|++||. +.-.....+. ...+.++|.|+.++...+ ..++.|.|++..++..|...+.
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQ--KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHC--CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEECCCccccccccccC--CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence 34567899999999998 7433333332 114568899998886533 4678899999999999988764
No 32
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=89.30 E-value=0.45 Score=45.64 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=46.7
Q ss_pred HHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+.+||++|++||++... . .++.+.++|.|+.++...+ ..++.|.||+..++..|...+.
T Consensus 260 ~~~~~~aDlvl~iG~~~~~~---~---~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (549)
T 3eya_A 260 FHTMMNADTLVLLGTQFPYR---A---FYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVE 324 (549)
T ss_dssp HHHHHHCSEEEEESCCCCCG---G---GSCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSC
T ss_pred HHHHHhCCEEEEECCCCCcc---c---cCCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 45678999999999987422 1 2345678899998876532 4678899999999999987765
No 33
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=89.00 E-value=0.58 Score=45.08 Aligned_cols=65 Identities=23% Similarity=0.164 Sum_probs=46.5
Q ss_pred HHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+++||++|++||.........+ ...+.++|.|+.++...+ ..++.|.||+..++..|...+.
T Consensus 269 ~~~l~~aDlvl~lG~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (566)
T 1ozh_A 269 DRLLQLADLVICIGYSPVEYEPAMW---NSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID 336 (566)
T ss_dssp HHHHHHCSEEEEESCCGGGSCGGGT---CCSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHhCCEEEEECCCCCcCCcccc---CCCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence 3456789999999995432222222 233678999999876533 4688899999999999987764
No 34
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=88.74 E-value=0.3 Score=44.15 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=46.6
Q ss_pred CCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC--CCcccchhcCCchHHHHHHHHHh
Q psy12429 132 CDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS--HLNFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 132 aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~--~~~~dl~i~g~aD~vl~~L~~~L 192 (268)
|+|.|.+|-|.+++-.+.+ +....+|-||.++-. +..+|+-|.||.-+++++|.+.|
T Consensus 260 ~~lYiA~GISGAiQHlaGm----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l 318 (320)
T 1o97_D 260 CKLYVAMGISGSIQHMAGM----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 318 (320)
T ss_dssp CSEEEEESCCCCHHHHHHH----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred cceEEEEeccCcHHHHhhc----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHH
Confidence 3999999999999866554 333468889999855 45799999999999999998776
No 35
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=87.53 E-value=0.59 Score=42.08 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=48.1
Q ss_pred cCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC--CCcccchhcCCchHHHHHHHHHhC
Q psy12429 131 RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS--HLNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 131 ~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~--~~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.++|.|.+|-|.+++-.+.+ +....+|-||.++-. +..+|+-|.||.-+++++|.+.|.
T Consensus 253 ~P~lYiA~GISGAiQHlaGm----~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 253 APELYIAVGISGAIQHLAGM----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp CCSEEEEESCCCCHHHHTTT----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred CcceEEEecccCcHHHHhhc----ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 67999999999999866553 333468889999855 457999999999999999988773
No 36
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=87.34 E-value=0.6 Score=45.12 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=47.0
Q ss_pred hhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 128 DKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+||++|++|+.+.-.....+... ..+.++|.|+.++...+ ..++.|.|++..++..|...+.
T Consensus 286 ~~~~aDlvl~~G~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 353 (578)
T 3lq1_A 286 DKLTPEVVIRFGSMPVSKPLKNWLEQ-LSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMP 353 (578)
T ss_dssp HHTCCSEEEEESSCCSCHHHHHHHHH-CCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSC
T ss_pred ccCCCCEEEEeCCcccchhHHHHHhc-CCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhcc
Confidence 46789999999997643333333222 24568899999875432 4678899999999999988764
No 37
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=87.07 E-value=0.56 Score=42.07 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=46.8
Q ss_pred cCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC--CCcccchhcCCchHHHHHHHHHh
Q psy12429 131 RCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS--HLNFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 131 ~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~--~~~~dl~i~g~aD~vl~~L~~~L 192 (268)
.++|.|.+|-|.+++-.+.+ +....+|-||.++-. +..+|+-|.||.-+++++|.+.|
T Consensus 248 ~P~lYiA~GISGAiQHlaGm----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 248 APELYVAVGISGAIQHLAGM----KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CCSEEEEESCCCCHHHHTTT----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred CCceEEEEeccCcHHHHhhh----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 67999999999999866553 333468889999855 45799999999999999997653
No 38
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=85.61 E-value=1.9 Score=35.35 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=46.9
Q ss_pred HHHHHHhhhcCCeEEEEccCCcccccccc-ccc-C-------CCCCCEEEEeeccCCCCc-----------ccchhcCCc
Q psy12429 122 HSAMTLDKNRCDLLIVIGSSLKVRPVALI-PNS-L-------PPSVPQILINRERLSHLN-----------FDVELLGDG 181 (268)
Q Consensus 122 ~~~~~~~~~~aDlllviGTSl~V~p~~~l-~~~-~-------~~g~~~i~IN~~~t~~~~-----------~dl~i~g~a 181 (268)
++.+.....++|+.||||..-.|-|++.= +.. + ...++.++|....-.... ...-+.||+
T Consensus 89 MdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDA 168 (180)
T 1pno_A 89 LEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDA 168 (180)
T ss_dssp HHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESCH
T ss_pred HHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccH
Confidence 56667788999999999999999998862 221 0 123345555544432211 112378999
Q ss_pred hHHHHHHHHHh
Q psy12429 182 DVIIDTLCRAL 192 (268)
Q Consensus 182 D~vl~~L~~~L 192 (268)
.+.+.+|...+
T Consensus 169 K~~~~~l~~~l 179 (180)
T 1pno_A 169 KKMTEQIVQAM 179 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887765
No 39
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=84.99 E-value=1.4 Score=42.57 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=47.5
Q ss_pred HHHhhhcCCeEEEEccCCccccc-ccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPV-ALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~-~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.+++||++|++|+.+..... ..+ + .+.++|.|+.++...+ ..|+.+.|++..++..|...+.
T Consensus 263 ~~~~l~~aDlvl~iG~~~~~~~~~~~~---~-~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~ 331 (590)
T 1v5e_A 263 ANETILEADTVLFAGSNFPFSEVEGTF---R-NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD 331 (590)
T ss_dssp HHHHHHHCSEEEEESCCCTTTTTTTTT---T-TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHhCCEEEEECCCCcchhccccC---C-CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhc
Confidence 34567899999999999854431 001 2 3567888988875532 4678899999999999988775
No 40
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=84.37 E-value=0.91 Score=44.14 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=46.1
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHh
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~L 192 (268)
+.+.+.++|++|++|+.+.-.....+. .+..+.++|.|+.++...+ ..|+.+.||+..++..|.+.+
T Consensus 287 ~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 356 (616)
T 2pan_A 287 GNATLLASDMVFGIGNRFANRHTGSVE-KYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVA 356 (616)
T ss_dssp HHHHHHHCSEEEEESCCCCHHHHSSHH-HHHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCCcccccCccc-ccCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHh
Confidence 345678999999999987522111111 1223567888988875432 467889999999999998765
No 41
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=83.54 E-value=2.1 Score=35.77 Aligned_cols=84 Identities=17% Similarity=0.279 Sum_probs=52.0
Q ss_pred cEEEcCCCCCHH---HHHHHHHhhhcCCeEEEEccCCcccccccc-ccc-C-------CCCCCEEEEeeccCCCCc----
Q psy12429 109 DIVFFGEGLPDS---FHSAMTLDKNRCDLLIVIGSSLKVRPVALI-PNS-L-------PPSVPQILINRERLSHLN---- 172 (268)
Q Consensus 109 ~Iv~FgE~~p~~---~~~~~~~~~~~aDlllviGTSl~V~p~~~l-~~~-~-------~~g~~~i~IN~~~t~~~~---- 172 (268)
+|++=.-.+|.+ .++.+.....++|+.||||..-.|-|+++= +.. + ...++.++|....-....
T Consensus 96 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~ 175 (203)
T 2fsv_C 96 NVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFIKRSMASGYAGVE 175 (203)
T ss_dssp HHHHHHTTCCGGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCC
T ss_pred cEEEEEecCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCc
Confidence 333333335554 256667788999999999999999998862 221 0 123345555544432211
Q ss_pred -------ccchhcCCchHHHHHHHHHh
Q psy12429 173 -------FDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 173 -------~dl~i~g~aD~vl~~L~~~L 192 (268)
.-.-+.||+.+.+.+|...+
T Consensus 176 NpLF~~~nt~MlfGDAK~~~~~l~~~l 202 (203)
T 2fsv_C 176 NELFFRNNTMMLFGDAKKMTEQIVQAM 202 (203)
T ss_dssp CGGGGSTTEEEEESCHHHHHHHHHHHC
T ss_pred CcceecCCceEEeccHHHHHHHHHHHh
Confidence 11237899999999887764
No 42
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=83.13 E-value=2 Score=35.98 Aligned_cols=85 Identities=25% Similarity=0.312 Sum_probs=53.1
Q ss_pred cEEEcCCCCCHH---HHHHHHHhhhcCCeEEEEccCCcccccccc-ccc-C-------CCCCCEEEEeeccCCCCc----
Q psy12429 109 DIVFFGEGLPDS---FHSAMTLDKNRCDLLIVIGSSLKVRPVALI-PNS-L-------PPSVPQILINRERLSHLN---- 172 (268)
Q Consensus 109 ~Iv~FgE~~p~~---~~~~~~~~~~~aDlllviGTSl~V~p~~~l-~~~-~-------~~g~~~i~IN~~~t~~~~---- 172 (268)
+|++=.-.+|.+ .++.+.....++|+.||||..-.|-|++.- +.. + ...++.++|....-....
T Consensus 95 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~ 174 (207)
T 1djl_A 95 NVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVD 174 (207)
T ss_dssp HHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCC
T ss_pred cEEEEEeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCCCc
Confidence 333333335554 356677788999999999999999998862 221 1 123344555444432211
Q ss_pred -------ccchhcCCchHHHHHHHHHhC
Q psy12429 173 -------FDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 173 -------~dl~i~g~aD~vl~~L~~~LG 193 (268)
.-.-+.||+.+.+.+|...+.
T Consensus 175 NpLF~~~nt~MlfGDAK~~~~~l~~~l~ 202 (207)
T 1djl_A 175 NPIFYKPNTAMLLGDAKKTCDALQAKVR 202 (207)
T ss_dssp CGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred CcceecCCceEEeccHHHHHHHHHHHHH
Confidence 112378999999999987764
No 43
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=82.53 E-value=1.3 Score=43.00 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=45.2
Q ss_pred HhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.++ +|++|++||.+.-.....+.... .+.++|.|+.++...+ ..++.|.|++..++..|...+.
T Consensus 306 ~~~~-~Dlvl~iG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 373 (604)
T 2x7j_A 306 RKLR-PDVVIRFGPMPVSKPVFLWLKDD-PTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLT 373 (604)
T ss_dssp HHHC-CSEEEEESSCCSCHHHHHHHHHC-TTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSC
T ss_pred hhcC-CCEEEEECCcCccHHHHHHHhhC-CCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhc
Confidence 3444 89999999987533222232212 1567888998885533 4678899999999999988763
No 44
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=82.47 E-value=1.2 Score=32.07 Aligned_cols=54 Identities=24% Similarity=0.457 Sum_probs=37.1
Q ss_pred ceeeeCCCCceechHHHHHHHhh-------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQ-------------------QRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGV 105 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~-------------------~~~p~C~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~ 105 (268)
+...|+-||...+|.++.+.+.. .-.-.|| .||.
T Consensus 7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP--~CgE------------------------- 59 (95)
T 2k5c_A 7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCP--VCGE------------------------- 59 (95)
T ss_dssp -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECT--TTCC-------------------------
T ss_pred ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCC--CccH-------------------------
Confidence 45789999999999887554321 1145799 9983
Q ss_pred ccCcEEEcCCCCCHHHHHHHHHhhh
Q psy12429 106 MKPDIVFFGEGLPDSFHSAMTLDKN 130 (268)
Q Consensus 106 lrP~Iv~FgE~~p~~~~~~~~~~~~ 130 (268)
=|||-.+|....+...+.+.
T Consensus 60 -----EFyG~~Lp~~EaeKVFELLN 79 (95)
T 2k5c_A 60 -----EFYGKTLPRREAEKVFELLN 79 (95)
T ss_dssp -----EEETTSSCTTTHHHHHHHHH
T ss_pred -----HHhcccCChHHHHHHHHHHH
Confidence 58999999765555555544
No 45
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=82.30 E-value=2 Score=35.26 Aligned_cols=72 Identities=26% Similarity=0.277 Sum_probs=46.7
Q ss_pred HHHHHHhhhcCCeEEEEccCCcccccccc-ccc-C-------CCCCC-EEEEeeccC-CCC--c-------ccchhcCCc
Q psy12429 122 HSAMTLDKNRCDLLIVIGSSLKVRPVALI-PNS-L-------PPSVP-QILINRERL-SHL--N-------FDVELLGDG 181 (268)
Q Consensus 122 ~~~~~~~~~~aDlllviGTSl~V~p~~~l-~~~-~-------~~g~~-~i~IN~~~t-~~~--~-------~dl~i~g~a 181 (268)
++.+.....++|+.||||..-.|-|++.- +.. + ...++ +|.+.+.-- ++. . ...-+.||+
T Consensus 88 MdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDA 167 (184)
T 1d4o_A 88 MDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDA 167 (184)
T ss_dssp HHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCH
T ss_pred HHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccH
Confidence 55666788999999999999999998862 221 0 11233 444444432 221 1 112378999
Q ss_pred hHHHHHHHHHhC
Q psy12429 182 DVIIDTLCRALG 193 (268)
Q Consensus 182 D~vl~~L~~~LG 193 (268)
.+.+.+|...+.
T Consensus 168 K~~~~~l~~~l~ 179 (184)
T 1d4o_A 168 KKTCDALQAKVR 179 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 46
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=81.34 E-value=1.6 Score=35.92 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=43.3
Q ss_pred HHHhhhcCCeEEEEccCCcccccccc-ccc-C-------CCCCCEEEEeeccCCCCc-----------ccchhcCCchHH
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALI-PNS-L-------PPSVPQILINRERLSHLN-----------FDVELLGDGDVI 184 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l-~~~-~-------~~g~~~i~IN~~~t~~~~-----------~dl~i~g~aD~v 184 (268)
+.....++|+.||||..-.|-|++.- +.. + ...++.++|......... .-.-+.||+.+.
T Consensus 99 IN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~ 178 (186)
T 2bru_C 99 INDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKAS 178 (186)
T ss_dssp CHHHHHHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCCSCTTTBSSSEEEECSCHHHH
T ss_pred HhcccccCCEEEEeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHH
Confidence 34567899999999999999998862 221 1 123445555554432211 112378999999
Q ss_pred HHHHHHH
Q psy12429 185 IDTLCRA 191 (268)
Q Consensus 185 l~~L~~~ 191 (268)
+.+|...
T Consensus 179 ~~~l~~~ 185 (186)
T 2bru_C 179 VDAILKA 185 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
No 47
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=80.38 E-value=1.2 Score=44.19 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=45.0
Q ss_pred HhhhcCCeEEEEccCCcccccccccccCC--------CCCCEEEEeeccCCCC---cccchhcCCchHHHHHHHHHhC
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLP--------PSVPQILINRERLSHL---NFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~~l~~~~~--------~g~~~i~IN~~~t~~~---~~dl~i~g~aD~vl~~L~~~LG 193 (268)
..+++||++|++||.+.-.-...+....+ ....+|.|+.++...+ ..++.|.|++..++..|...+.
T Consensus 352 ~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~ 429 (677)
T 1t9b_A 352 LAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIF 429 (677)
T ss_dssp HHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSC
T ss_pred HHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhh
Confidence 45779999999999986332222211111 1122788888775432 4678899999999999987764
No 48
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=75.94 E-value=3.9 Score=39.11 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=40.2
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCCcccchhcCCchHHHHHHHHHh
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCRAL 192 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~~~dl~i~g~aD~vl~~L~~~L 192 (268)
+.+.+.+||++|++|+.+.-.....+.... .+.++|.|+.++...+.. ....-+...++..|...+
T Consensus 272 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~-~~~~~~~~~~l~~L~~~l 337 (563)
T 2vk8_A 272 VKEAVESADLILSVGALLSDFNTGSFSYSY-KTKNIVEFHSDHMKIRNA-TFPGVQMKFVLQKLLTTI 337 (563)
T ss_dssp HHHHHHTCSEEEEESCCCCTTTTTTTCCCC-CCSCEEEECSSEEEETTE-EEETCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCCccccccccccCC-CCCeEEEEeCCceEECCc-ccCCcCHHHHHHHHHHhh
Confidence 345678999999999998655444332222 356789999887543221 111122366777776554
No 49
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=73.11 E-value=1.2 Score=38.46 Aligned_cols=56 Identities=14% Similarity=-0.038 Sum_probs=42.1
Q ss_pred hCCCcch-hHHHhhhcC-CCCCCceecccccccC-CCcccccCCCchhHHHHHHHHhCC
Q psy12429 192 LGESWTG-TLLELYNSL-PPSVPQILINRERLSH-LNFDVELLGDGDVIIDTLCRALGE 247 (268)
Q Consensus 192 LG~~w~~-~~~~~~~~~-~~~~pqil~n~e~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 247 (268)
+|+|+.+ |...++... ....|-+.||.++... -.+++.+.|+|++++.+|.++||.
T Consensus 187 iGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg~ 245 (246)
T 1yc5_A 187 LGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245 (246)
T ss_dssp ESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC
T ss_pred ECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 6999999 665553322 2357889999876532 236788899999999999999994
No 50
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=71.64 E-value=5.5 Score=37.87 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=39.7
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCCcccchhcCCchHHHHHHHH
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCR 190 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~~~dl~i~g~aD~vl~~L~~ 190 (268)
+.+.+.+||++|++|+.+.......+.... .+.++|.|+.++...+.. .....+...++..|.+
T Consensus 270 ~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~-~~~~~~~~~~l~~L~~ 333 (552)
T 1ovm_A 270 VKEAIEGADTVLCVGTRFTDTLTAGFTHQL-TPAQTIEVQPHAARVGDV-WFTGIPMNQAIETLVE 333 (552)
T ss_dssp HHHHHHTSSEEEEESCCCCTTTTTTTCCCC-CTTTEEEECSSEEEETTE-EEESCCHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCCCcccccccccCC-CCCeEEEEeCChheeCCc-ccCCccHHHHHHHHHh
Confidence 445678999999999998766554443222 356788898877543211 1111223667777765
No 51
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=69.58 E-value=5.8 Score=37.94 Aligned_cols=66 Identities=8% Similarity=-0.020 Sum_probs=41.3
Q ss_pred HHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCCcccchhcCCchHHHHHHHHHhC
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+.++|++|++|+.+.-.....+... ..+.++|.|+.++...+. ......+...++..|...+.
T Consensus 271 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~-~~~~~~~~~~~l~~L~~~l~ 336 (568)
T 2wvg_A 271 EKTMKEADAVIALAPVFNDYSTTGWTDI-PDPKKLVLAEPRSVVVNG-IRFPSVHLKDYLTRLAQKVS 336 (568)
T ss_dssp HHHHHHCSEEEEESCCCBTTTTTTTTCC-CCTTTEEEECSSEEEETT-EEEESCCHHHHHHHHHHHCC
T ss_pred HHHHHhCCEEEEECCCcccccccccccC-CCCCcEEEEeCChhhcCC-eecCCCCHHHHHHHHHHhcc
Confidence 3457789999999998864444333222 235678889888754321 12222335778888877665
No 52
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=69.37 E-value=6.2 Score=37.73 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=41.2
Q ss_pred HHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCCcccchhcCCchHHHHHHHHHhC
Q psy12429 126 TLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 126 ~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
.+.+.++|++|++|+.+.-.....+... ..+.++|.|+.++...+. .....-....++..|...+.
T Consensus 271 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~-~~~~~~~~~~~l~~L~~~l~ 336 (566)
T 2vbi_A 271 QELVETSDALLCIAPVFNDYSTVGWSAW-PKGPNVILAEPDRVTVDG-RAYDGFTLRAFLQALAEKAP 336 (566)
T ss_dssp HHHHHTCSEEEEESCCCBTTTTTTTTSC-CCSTTEEEECSSEEEETT-EEEESSCHHHHHHHHHHHCC
T ss_pred HHHHHhCCEEEEECCCcccccccccccc-CCCCcEEEEeCChheeCC-cccCCccHHHHHHHHHHhcc
Confidence 4457889999999999865554433222 235678889888754321 11122235677887776664
No 53
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=68.82 E-value=2.2 Score=36.47 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=41.4
Q ss_pred hCCCcch-hHHHhhhcCC-CCCCceecccccccC-CCcccccCCCchhHHHHHHHHhC
Q psy12429 192 LGESWTG-TLLELYNSLP-PSVPQILINRERLSH-LNFDVELLGDGDVIIDTLCRALG 246 (268)
Q Consensus 192 LG~~w~~-~~~~~~~~~~-~~~pqil~n~e~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 246 (268)
+|+|+.+ |..+++...+ ...+.+.||.++... -.+++.+.|+|++++.+|.++|.
T Consensus 174 iGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l~ 231 (235)
T 1s5p_A 174 IGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp ESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHHH
T ss_pred ECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHHH
Confidence 5999999 7666644332 357899999887432 25888899999999999988773
No 54
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=64.54 E-value=3.8 Score=32.92 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=24.8
Q ss_pred HhhhcCCeEEEEccCC--cccccccccccCCCCCCEEEEeeccC
Q psy12429 127 LDKNRCDLLIVIGSSL--KVRPVALIPNSLPPSVPQILINRERL 168 (268)
Q Consensus 127 ~~~~~aDlllviGTSl--~V~p~~~l~~~~~~g~~~i~IN~~~t 168 (268)
+.+++||++|++||.+ .-.....+....+ .++|.|+....
T Consensus 103 ~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~--~~iI~i~~~~~ 144 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKKFYINQVLSAAKNFSN--LKTIAIERGYI 144 (170)
T ss_dssp SSSCCCSEEEEESCCHHHHHHHHHHHHHHCC--CCEEECSSSCC
T ss_pred HHhhcCCEEEEECCccCccccccccccccCC--CeEEEECCCcc
Confidence 4578999999999998 4333222222222 56776665543
No 55
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=60.06 E-value=5.5 Score=38.11 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCCCCcccchhcCCchHHHHHHHHHhC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCRALG 193 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~~~~~dl~i~g~aD~vl~~L~~~LG 193 (268)
+.+.++++|++|++|+.+.-.....+.... .+.++|.|+.++...+. ......+...++..|.+.++
T Consensus 289 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~-~~~~~~~~~~~l~~L~~~l~ 355 (570)
T 2vbf_A 289 LKNFVESADFILMLGVKLTDSSTGAFTHHL-DENKMISLNIDEGIIFN-KVVEDFDFRAVVSSLSELKG 355 (570)
T ss_dssp HHHHHHHCSEEEEESCCCCGGGTTTTCCCC-CGGGEEEECSSCEEETT-EEECSSCHHHHHHTGGGCCS
T ss_pred HHHHHHhCCEEEEECCCcccccccccccCC-CCCeEEEEeCCHHHhCC-eeecCCCHHHHHHHHHHhcc
Confidence 345678899999999988544443332212 34678888888754321 12222345666666654443
No 56
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=57.20 E-value=3.8 Score=26.15 Aligned_cols=33 Identities=24% Similarity=0.629 Sum_probs=19.9
Q ss_pred cceeeeCCCCceechHHHHHHHhhCCCC---CCCCCCCC
Q psy12429 44 FATASCTRCGHRVSAEAIKADVFQQRIP---LCPSPACL 79 (268)
Q Consensus 44 l~~~~C~~C~~~~~~~~~~~~~~~~~~p---~C~~~~C~ 79 (268)
|...+|..||..|+-+.-..+-++ +.| .|| .|+
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~-~lP~dw~CP--~Cg 37 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFD-QLPDDWCCP--VCG 37 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGG-GSCTTCBCT--TTC
T ss_pred CCEEECCCCCeEEeCCcCCCcchh-hCCCCCcCc--CCC
Confidence 566799999999874321111111 123 699 997
No 57
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.49 E-value=12 Score=32.17 Aligned_cols=38 Identities=16% Similarity=0.398 Sum_probs=28.2
Q ss_pred CeEeeccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 36 NVIECHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 36 ~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
-|+.++|. +|..|+...+...+..-.....+..|| +||
T Consensus 192 avv~v~~~----~C~GC~~~lppq~~~~i~~~~~Iv~Cp--~Cg 229 (256)
T 3na7_A 192 SIVTIKKQ----ACGGCFIRLNDKIYTEVLTSGDMITCP--YCG 229 (256)
T ss_dssp SEEECBTT----BCTTTCCBCCHHHHHHHHHSSSCEECT--TTC
T ss_pred eEEEeeCC----ccCCCCeeeCHHHHHHHHCCCCEEECC--CCC
Confidence 57777765 799999988877765433344678999 998
No 58
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=54.41 E-value=2.8 Score=36.17 Aligned_cols=61 Identities=23% Similarity=0.155 Sum_probs=43.8
Q ss_pred hCCCcch-hHHHhhhcC-CCCCCceecccccccC-CCcccccCCCchhHHHHHHHHhCCccccccc
Q psy12429 192 LGESWTG-TLLELYNSL-PPSVPQILINRERLSH-LNFDVELLGDGDVIIDTLCRALGESWTVRLK 254 (268)
Q Consensus 192 LG~~w~~-~~~~~~~~~-~~~~pqil~n~e~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (268)
+|+|+.+ |..+++... ....+-+.||.++... -.+++.+.|+|++++.+|.+++. ...++|
T Consensus 184 iGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~--~~~~~~ 247 (249)
T 1m2k_A 184 AGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVR--KALSLK 247 (249)
T ss_dssp ESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHH--HHHHTC
T ss_pred EccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHHH--HhcCcc
Confidence 6999999 665553322 3467889999876532 23678889999999999998885 444444
No 59
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=48.77 E-value=9 Score=30.53 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=17.5
Q ss_pred eeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
..+|..|++.|... .....|| .||+
T Consensus 132 ~y~C~~Cg~~~~~~--------~~~~~Cp--~CG~ 156 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL--------PPGGVCP--DCGS 156 (165)
T ss_dssp CEEESSSCCEESSC--------CGGGBCT--TTCC
T ss_pred EEECCCCCCcccCC--------CCCCcCC--CCCC
Confidence 46899999988531 1123799 9983
No 60
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=47.33 E-value=20 Score=34.18 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=28.2
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeeccCC
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLS 169 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~t~ 169 (268)
+.+.+++||++|++|+.+.-.....+..... ..++|.|+.++..
T Consensus 283 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~i~~d~~~ 326 (565)
T 2nxw_A 283 ITRLVEESDGLFLLGAILSDTNFAVSQRKID-LRKTIHAFDRAVT 326 (565)
T ss_dssp HHHHHHTCSEEEEESCCBCSSTTSBCTTTSC-GGGEEEEETTEEE
T ss_pred HHHHHHhCCEEEEECCCccccccccccccCC-CCcEEEEeCCcee
Confidence 3456788999999999886555443322222 2467888766543
No 61
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=46.29 E-value=6.6 Score=29.54 Aligned_cols=28 Identities=29% Similarity=0.659 Sum_probs=18.9
Q ss_pred cceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 44 FATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 44 l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
+...+|.+||..| .+. -.....|| .|++
T Consensus 65 v~p~~C~~CG~~F-~~~------~~kPsrCP--~CkS 92 (105)
T 2gmg_A 65 IKPAQCRKCGFVF-KAE------INIPSRCP--KCKS 92 (105)
T ss_dssp ECCCBBTTTCCBC-CCC------SSCCSSCS--SSCC
T ss_pred EECcChhhCcCee-ccc------CCCCCCCc--CCCC
Confidence 3457999999987 111 12357899 9984
No 62
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=44.01 E-value=17 Score=36.10 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=33.8
Q ss_pred hhhcCCeEEEEccCCccccc-c---cccccCCCCCCEEEEeeccCCC-Ccccchh
Q psy12429 128 DKNRCDLLIVIGSSLKVRPV-A---LIPNSLPPSVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~p~-~---~l~~~~~~g~~~i~IN~~~t~~-~~~dl~i 177 (268)
+++++|++|++|+-....-. . .+.+...+|+++|.|++..+.. ..+|.++
T Consensus 196 d~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l 250 (765)
T 2vpz_A 196 DWENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWL 250 (765)
T ss_dssp CGGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEE
T ss_pred ccccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEe
Confidence 36789999999998654322 1 1222235789999999998764 3466654
No 63
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=41.33 E-value=7.5 Score=33.49 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=40.4
Q ss_pred hCCCcch-hHHHhhhcC-CCCCCceecccccccC-CCcccccCCCchhHHHHHHHHhC
Q psy12429 192 LGESWTG-TLLELYNSL-PPSVPQILINRERLSH-LNFDVELLGDGDVIIDTLCRALG 246 (268)
Q Consensus 192 LG~~w~~-~~~~~~~~~-~~~~pqil~n~e~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 246 (268)
+|+|+.+ |..+++... ....|-+.||.++... -.+++.+.|+|++++.+|.+.|.
T Consensus 190 iGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 190 VGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVK 247 (253)
T ss_dssp ESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHHH
T ss_pred ECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHHH
Confidence 6999999 765553322 2357889999876542 23678889999999999988774
No 64
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=41.31 E-value=6.4 Score=32.13 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=22.5
Q ss_pred hcCCeEEEEccCCc--ccccccccccCCCCCCEEEEeec
Q psy12429 130 NRCDLLIVIGSSLK--VRPVALIPNSLPPSVPQILINRE 166 (268)
Q Consensus 130 ~~aDlllviGTSl~--V~p~~~l~~~~~~g~~~i~IN~~ 166 (268)
.+||++|+|||.+. ......+- .+..++++|.|+..
T Consensus 107 ~~aDLvI~iG~rf~~~~~~t~~~~-~fap~akii~Idk~ 144 (174)
T 1ytl_A 107 GNYDLVLMLGSIYYHGSQMLAAIK-NFAPHIRALAIDRY 144 (174)
T ss_dssp CCCSEEEEESCCHHHHHHHHHHHH-HHCTTCEEEECSSS
T ss_pred CCCCEEEEECCcCCcccccccccc-ccCCCCeEEEeCCC
Confidence 89999999999884 22111221 12236678888644
No 65
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=37.86 E-value=3.9 Score=26.27 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=17.3
Q ss_pred ceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
...+|.+||+.++.+++.. -..-+|| .||
T Consensus 2 ~iY~C~rCg~~fs~~el~~----lP~IrCp--yCG 30 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKV----LPGVRCP--YCG 30 (48)
T ss_dssp ---CCCCTTTTCCCCCSCC----CSSSCCT--TTC
T ss_pred cEEEeeccCCCccHHHHhh----CCCcccC--ccC
Confidence 4568999999887554311 1124788 998
No 66
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=36.65 E-value=14 Score=30.41 Aligned_cols=25 Identities=36% Similarity=0.804 Sum_probs=18.4
Q ss_pred cceeeeCCCCceechHHHHHHHhhCCCC-CCCCCCCC
Q psy12429 44 FATASCTRCGHRVSAEAIKADVFQQRIP-LCPSPACL 79 (268)
Q Consensus 44 l~~~~C~~C~~~~~~~~~~~~~~~~~~p-~C~~~~C~ 79 (268)
+...+|..||..|..+ ..| .|| .|+
T Consensus 153 ~~~~~C~~CG~~~~g~---------~~p~~CP--~C~ 178 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGT---------GAPELCP--ACA 178 (191)
T ss_dssp EEEEEETTTCCEEEEE---------ECCSBCT--TTC
T ss_pred CceEEECCCCCEeeCC---------CCCCCCC--CCc
Confidence 4468999999998622 234 899 998
No 67
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=34.90 E-value=12 Score=36.71 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=33.3
Q ss_pred hhhcCCeEEEEccCCccccc----ccccccCCCCCCEEEEeeccCCC-Ccccchh
Q psy12429 128 DKNRCDLLIVIGSSLKVRPV----ALIPNSLPPSVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~p~----~~l~~~~~~g~~~i~IN~~~t~~-~~~dl~i 177 (268)
++.++|++|++|+-....-. ..+.+...+|+++|.|++..+.. ..+|.+|
T Consensus 157 d~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l 211 (727)
T 2e7z_A 157 SFADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWL 211 (727)
T ss_dssp CTTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEE
T ss_pred CcccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceee
Confidence 47899999999998764422 11222235789999999988653 2456554
No 68
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.25 E-value=21 Score=26.95 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=18.1
Q ss_pred eeeeCCCCceechHHHHHHHhhCCCC-CCCCCCCCC
Q psy12429 46 TASCTRCGHRVSAEAIKADVFQQRIP-LCPSPACLS 80 (268)
Q Consensus 46 ~~~C~~C~~~~~~~~~~~~~~~~~~p-~C~~~~C~~ 80 (268)
..+|..||+.|..+ .... .|| .|+.
T Consensus 73 ~~~C~~CG~~~e~~--------~~~~~~CP--~Cgs 98 (119)
T 2kdx_A 73 ELECKDCSHVFKPN--------ALDYGVCE--KCHS 98 (119)
T ss_dssp EEECSSSSCEECSC--------CSTTCCCS--SSSS
T ss_pred eEEcCCCCCEEeCC--------CCCCCcCc--cccC
Confidence 57999999987642 2235 799 9983
No 69
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=33.07 E-value=20 Score=36.86 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=33.6
Q ss_pred hhhcCCeEEEEccCCccc-c--cccccccCCCCCCEEEEeeccCCC-Ccccchh
Q psy12429 128 DKNRCDLLIVIGSSLKVR-P--VALIPNSLPPSVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~-p--~~~l~~~~~~g~~~i~IN~~~t~~-~~~dl~i 177 (268)
++.+||++|++|+..... | +..+.+...+|+++|.|++..+.. ..+|.+|
T Consensus 181 D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l 234 (977)
T 1h0h_A 181 DLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYA 234 (977)
T ss_dssp GGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEE
T ss_pred HHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeee
Confidence 467899999999976532 2 112222235789999999988764 3567653
No 70
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=33.06 E-value=33 Score=29.74 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=45.9
Q ss_pred cccchhcCCc--hHHHHHHHH---------HhCCCcch-hHHHhhh-cCCCCCCceecccccccC-CCcccccCCCchhH
Q psy12429 172 NFDVELLGDG--DVIIDTLCR---------ALGESWTG-TLLELYN-SLPPSVPQILINRERLSH-LNFDVELLGDGDVI 237 (268)
Q Consensus 172 ~~dl~i~g~a--D~vl~~L~~---------~LG~~w~~-~~~~~~~-~~~~~~pqil~n~e~~~~-~~~~~~~~~~~~~~ 237 (268)
+.|+++.|+. ++.+....+ .+|+|+.| |...+.. ......|-+.||.++-.. -.+++.+.|+|+++
T Consensus 188 rP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~ 267 (273)
T 3riy_A 188 RPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTT 267 (273)
T ss_dssp EEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHH
T ss_pred CCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHH
Confidence 3566677775 334443332 36999999 6666543 234568899999876432 24777788999977
Q ss_pred HHHH
Q psy12429 238 IDTL 241 (268)
Q Consensus 238 ~~~~ 241 (268)
+.++
T Consensus 268 l~~l 271 (273)
T 3riy_A 268 LPEA 271 (273)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 71
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.03 E-value=52 Score=25.53 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCcceeEecCccchHhhcCCCCeEee--ccccceeeeCCCCceech
Q psy12429 5 DAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIEC--HGSFATASCTRCGHRVSA 58 (268)
Q Consensus 5 H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~viel--HG~l~~~~C~~C~~~~~~ 58 (268)
.+.|..|++.|.+..+-..| | ...+++ +..=..+.|.+||+.++.
T Consensus 65 YR~L~~L~e~Glv~~~~~~~--~-------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 111 (150)
T 2xig_A 65 YRILNFLEKENFISVLETSK--S-------GRRYEIAAKEHHDHIICLHCGKIIEF 111 (150)
T ss_dssp HHHHHHHHHTTSEEEEEETT--T-------EEEEEESCSCCCEEEEETTTCCEEEE
T ss_pred HHHHHHHHHCCcEEEEEeCC--C-------ceEEEecCCCCceEEEECCCCCEEEe
Confidence 46788999999987765543 1 123343 122357899999998654
No 72
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.86 E-value=49 Score=25.09 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeecc--ccceeeeCCCCceech
Q psy12429 5 DAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHG--SFATASCTRCGHRVSA 58 (268)
Q Consensus 5 H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG--~l~~~~C~~C~~~~~~ 58 (268)
.+.|..|++.|.+..+-..| | ...+++.. .=..+.|.+||+.++.
T Consensus 57 YR~L~~L~e~Glv~~~~~~~--------~-~~~Y~~~~~~~H~HliC~~Cg~v~~~ 103 (136)
T 1mzb_A 57 YRVLTQFEAAGLVVRHNFDG--------G-HAVFELADSGHHDHMVCVDTGEVIEF 103 (136)
T ss_dssp HHHHHHHHHHTSEEEECSSS--------S-SCEEEESSSCCCEEEEETTTCCEEEE
T ss_pred HHHHHHHHHCCcEEEEEeCC--------C-ceEEEeCCCCcceEEEECCCCCEEEe
Confidence 46788888888876653221 1 23455421 2246899999998764
No 73
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=31.04 E-value=14 Score=32.28 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=31.9
Q ss_pred HHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeec
Q psy12429 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRE 166 (268)
Q Consensus 124 ~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~ 166 (268)
++...+.+||++++-||||.=...-+|....++...+|++.+.
T Consensus 179 ~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~~a~~vvl~GPS 221 (270)
T 3l5o_A 179 ASEFILPECDYVYITCASVVDKTLPRLLELSRNARRITLVGPG 221 (270)
T ss_dssp GHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTSSEEEEESTT
T ss_pred HHHHhhccCCEEEEEeehhhcCCHHHHHhhCCCCCEEEEECCC
Confidence 3456789999999999999866666666656555567777765
No 74
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.31 E-value=22 Score=24.56 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=19.2
Q ss_pred ceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
....|..|+..+... ..+...|+ .||.
T Consensus 27 v~Y~C~~CG~~~e~~-------~~d~irCp--~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLS-------RTDAVRCK--DCGH 53 (70)
T ss_dssp CCEECSSSCCEECCC-------TTSTTCCS--SSCC
T ss_pred EEEECCCCCCcceeC-------CCCCccCC--CCCc
Confidence 446899999987543 23356899 9983
No 75
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=30.17 E-value=15 Score=32.09 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=31.4
Q ss_pred HHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeec
Q psy12429 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRE 166 (268)
Q Consensus 125 ~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~ 166 (268)
+...+..||++++-|||+.=...-+|...+++...+|++.+.
T Consensus 180 ~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~~a~~vvl~GPS 221 (270)
T 2h1q_A 180 SEFILPECDYVYITCASVVDKTLPRLLELSRNARRITLVGPG 221 (270)
T ss_dssp HHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTSSEEEEESTT
T ss_pred HHHHhhcCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecC
Confidence 344689999999999999876666666666554477777666
No 76
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=29.91 E-value=27 Score=27.79 Aligned_cols=48 Identities=8% Similarity=0.019 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeecc
Q psy12429 120 SFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRER 167 (268)
Q Consensus 120 ~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~ 167 (268)
..++.-.+++.+||++|.++|....--+..+-...+.|.|++.+....
T Consensus 57 ~i~~~d~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~ 104 (152)
T 4fyk_A 57 FIHEQNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQ 104 (152)
T ss_dssp HHHHHHHHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGG
T ss_pred HHHHHHHHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCC
Confidence 355565678999999999998433222333333346788998876544
No 77
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=29.07 E-value=31 Score=28.60 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=18.9
Q ss_pred ccceeeeCCCCceechHHHHHHHhhCCCC-CCCCCCCC
Q psy12429 43 SFATASCTRCGHRVSAEAIKADVFQQRIP-LCPSPACL 79 (268)
Q Consensus 43 ~l~~~~C~~C~~~~~~~~~~~~~~~~~~p-~C~~~~C~ 79 (268)
.....+|..||..|.. ..| .|| .|+
T Consensus 168 ~~~~~~C~~CG~i~~g----------~~p~~CP--~C~ 193 (202)
T 1yuz_A 168 DDKFHLCPICGYIHKG----------EDFEKCP--ICF 193 (202)
T ss_dssp SCCEEECSSSCCEEES----------SCCSBCT--TTC
T ss_pred CCcEEEECCCCCEEcC----------cCCCCCC--CCC
Confidence 3457899999998852 234 899 998
No 78
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=29.03 E-value=22 Score=23.37 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=12.0
Q ss_pred cceeeeCCCCceech
Q psy12429 44 FATASCTRCGHRVSA 58 (268)
Q Consensus 44 l~~~~C~~C~~~~~~ 58 (268)
|.+.+|..|+..|+-
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 356799999999864
No 79
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.09 E-value=25 Score=27.39 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=15.5
Q ss_pred EeeccccceeeeCCCCceechHH
Q psy12429 38 IECHGSFATASCTRCGHRVSAEA 60 (268)
Q Consensus 38 ielHG~l~~~~C~~C~~~~~~~~ 60 (268)
+++.-.=-..+|..||+.+..+.
T Consensus 62 L~i~~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 62 IEFVEEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp EEEEEECCEEEETTTCCEEEGGG
T ss_pred EEEEecCCcEECCCCCCEEeccc
Confidence 34444444679999999987544
No 80
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=26.91 E-value=21 Score=35.07 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=33.2
Q ss_pred HhhhcCCeEEEEccCCccccc---ccccccCCCCCCEEEEeeccCCC-Ccccchh
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPV---ALIPNSLPPSVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~---~~l~~~~~~g~~~i~IN~~~t~~-~~~dl~i 177 (268)
.++.++|++|++|+-....-. ..+.+...+|+++|.|++..+.. ..+|.++
T Consensus 162 ~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l 216 (715)
T 2iv2_X 162 NEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHI 216 (715)
T ss_dssp GGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEE
T ss_pred hHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEe
Confidence 357899999999987643221 12222235789999999988763 2455543
No 81
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=25.64 E-value=23 Score=34.74 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=32.6
Q ss_pred hhhcCCeEEEEccCCccccc---ccccccCCC--CCCEEEEeeccCCCC-cccchh
Q psy12429 128 DKNRCDLLIVIGSSLKVRPV---ALIPNSLPP--SVPQILINRERLSHL-NFDVEL 177 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~p~---~~l~~~~~~--g~~~i~IN~~~t~~~-~~dl~i 177 (268)
+++++|++|++|+-....-. ..+.+...+ |+++|.|++..+... .+|.++
T Consensus 163 d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l 218 (723)
T 2nap_A 163 DIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHV 218 (723)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEE
T ss_pred hHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeee
Confidence 46799999999997543221 122222234 899999999887642 456554
No 82
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=25.30 E-value=24 Score=36.32 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=33.2
Q ss_pred hhhcCCeEEEEccCCccc-c--cccccccC-CCCCCEEEEeeccCCC-Ccccchh
Q psy12429 128 DKNRCDLLIVIGSSLKVR-P--VALIPNSL-PPSVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~-p--~~~l~~~~-~~g~~~i~IN~~~t~~-~~~dl~i 177 (268)
++.+||++|++|+-.... | +..+.+.. .+|+++|.|++..+.. ..+|.+|
T Consensus 219 D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l 273 (1015)
T 1kqf_A 219 DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYA 273 (1015)
T ss_dssp GGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEE
T ss_pred HHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeee
Confidence 467899999999886432 2 12222223 5789999999988763 2466553
No 83
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=24.94 E-value=27 Score=29.97 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=30.3
Q ss_pred HhhhcCCeEEEEccCCcccccccccccCCCCCCEEEEeecc
Q psy12429 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRER 167 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~p~~~l~~~~~~g~~~i~IN~~~ 167 (268)
+.+.+||++++-|||+.=...-+|...+++...+|++.+.-
T Consensus 160 ~~l~~~D~v~iTGsTlvN~Ti~~lL~~~~~~~~vvl~GPS~ 200 (249)
T 3npg_A 160 HILPEVDGIIASASCIVNGTLDMILDRAKKAKLIVITGPTG 200 (249)
T ss_dssp HHGGGCSEEEEETTHHHHTCHHHHHHHCSSCSEEEEESGGG
T ss_pred hhhccCCEEEEEeeeeccCCHHHHHHhCcccCeEEEEecCc
Confidence 46889999999999998666666666665555557766654
No 84
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=24.45 E-value=2.2e+02 Score=26.53 Aligned_cols=80 Identities=11% Similarity=0.097 Sum_probs=48.9
Q ss_pred EEEcCCCCCHHHHHHHHHhhhcC-CeEEEEccCCccc------------ccccccccCCCCCCEEEEeeccCCCCcccc-
Q psy12429 110 IVFFGEGLPDSFHSAMTLDKNRC-DLLIVIGSSLKVR------------PVALIPNSLPPSVPQILINRERLSHLNFDV- 175 (268)
Q Consensus 110 Iv~FgE~~p~~~~~~~~~~~~~a-DlllviGTSl~V~------------p~~~l~~~~~~g~~~i~IN~~~t~~~~~dl- 175 (268)
++.|...++++......+..+.+ -...=|||+|..- |..+++ .+++.+|-+|+.+-.-+.
T Consensus 320 ~Iv~SdgLde~~i~~L~~~~~~~~~d~FGVGT~L~~~~~~~~~~~~~~~~~l~~V------yKLve~~G~P~~KlSd~~g 393 (446)
T 4hl7_A 320 LFIFSDGLDFDQALELCEYFAGRVKISFGIGTFLTNDLANWRNAAGVEYRPLSIV------IKLAECQGRPVAKISDQPE 393 (446)
T ss_dssp EEEECSSCCHHHHHHHHHHHTTTSEEEEEECHHHHSCCTTCBCTTCCBCCCCEEE------EEEEEETTEECCBCCSSGG
T ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCcEEEeccceeccCcccccccccCCCCceeE------EEEEEECCcceeEecCCcc
Confidence 58899999997555544333333 3467799999863 222222 247788877655321122
Q ss_pred hhcCCchHHHHHHHHHhCCC
Q psy12429 176 ELLGDGDVIIDTLCRALGES 195 (268)
Q Consensus 176 ~i~g~aD~vl~~L~~~LG~~ 195 (268)
...++-.+++..+-+.+|..
T Consensus 394 K~t~~d~~~~~~~k~~f~~~ 413 (446)
T 4hl7_A 394 KAMCEDPIFLANLKRRFNIE 413 (446)
T ss_dssp GCBCSCHHHHHHHHHHTTCC
T ss_pred cccCCCHHHHHHHHHHcCCc
Confidence 23355677888888899844
No 85
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.09 E-value=99 Score=23.13 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeec--cccceeeeCCCCceech
Q psy12429 5 DAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH--GSFATASCTRCGHRVSA 58 (268)
Q Consensus 5 H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielH--G~l~~~~C~~C~~~~~~ 58 (268)
.+.|..|++.|.+..+-..| | ...+++. +.=..+.|.+||+.++.
T Consensus 49 YR~L~~L~e~Glv~~~~~~~--------~-~~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 49 YRTLQSMASSGLVDTLHTDT--------G-ESVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp HHHHHHHHTTTSEEEEECTT--------S-CEEEEECCSSSCEEEEETTTCCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCC--------C-ceEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 57788999999887764432 1 2334441 23456899999987654
No 86
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.90 E-value=70 Score=24.52 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeecc-ccceeeeCCCCceech
Q psy12429 5 DAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHG-SFATASCTRCGHRVSA 58 (268)
Q Consensus 5 H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielHG-~l~~~~C~~C~~~~~~ 58 (268)
.+.|..|++.|.+..+-..| | ...+++.+ .=..+.|.+||+.++.
T Consensus 60 YR~L~~L~e~Glv~~~~~~~--------~-~~~Y~~~~~~H~HliC~~Cg~v~~~ 105 (145)
T 2fe3_A 60 YNNLRVFRESGLVKELTYGD--------A-SSRFDFVTSDHYHAICENCGKIVDF 105 (145)
T ss_dssp HHHHHHHHHTTSEEEECCTT--------S-CCEEEECCCCEEEEEETTTCCEEEC
T ss_pred HHHHHHHHHCCCEEEEeeCC--------C-ceEEECCCCCcceEEECCCCCEEEe
Confidence 46788899999887664332 1 12333321 1245899999987653
No 87
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=23.74 E-value=98 Score=27.35 Aligned_cols=57 Identities=9% Similarity=0.011 Sum_probs=36.2
Q ss_pred CcEEEcCCCCCH--HHHHHHHHhhhcCCeEEEEccCCcccccccccccC-CCCCCEEEEee
Q psy12429 108 PDIVFFGEGLPD--SFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSL-PPSVPQILINR 165 (268)
Q Consensus 108 P~Iv~FgE~~p~--~~~~~~~~~~~~aDlllviGTSl~V~p~~~l~~~~-~~g~~~i~IN~ 165 (268)
|++..|+.-=.. ...+++.+.+.++|++||||..-+ ....+|...+ ..|.+.+.|..
T Consensus 184 p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nS-SNT~rL~eia~~~~~~ty~Ie~ 243 (297)
T 3dnf_A 184 KEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNS-GNTRRLYYISKELNPNTYHIET 243 (297)
T ss_dssp SEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTC-HHHHHHHHHHHHHCSSEEEESS
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCC-chhHHHHHHHHhcCCCEEEeCC
Confidence 677777665343 234556677889999999998654 2244555443 34566777743
No 88
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.60 E-value=52 Score=25.51 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeec--cccceeeeCCCCceech
Q psy12429 5 DAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH--GSFATASCTRCGHRVSA 58 (268)
Q Consensus 5 H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielH--G~l~~~~C~~C~~~~~~ 58 (268)
.+.|..|++.|.+.++-..| | ...+++. ..=+.+.|..||+.++.
T Consensus 56 YR~L~~L~e~Glv~~~~~~~--~-------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (150)
T 2w57_A 56 YRVLNQFDDAGIVTRHHFEG--G-------KSVFELSTQHHHDHLVCLDCGEVIEF 102 (150)
T ss_dssp HHHHHHHHHTTSEEEEECGG--G-------CEEEEECCSSCCEEEEETTTCCEEEE
T ss_pred HHHHHHHHHCCcEEEEEeCC--C-------ceEEEecCCCceeEEEECCCCCEEEe
Confidence 46788899999887764321 1 1234432 12246899999987654
No 89
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=23.35 E-value=40 Score=22.24 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=15.6
Q ss_pred ceeeeCCCCcee--chHHHHHHHhh
Q psy12429 45 ATASCTRCGHRV--SAEAIKADVFQ 67 (268)
Q Consensus 45 ~~~~C~~C~~~~--~~~~~~~~~~~ 67 (268)
.-++|..||+.. .|+.|...+.+
T Consensus 2 iPVRCFTCGkvi~~~we~y~~~~~~ 26 (55)
T 1ef4_A 2 IPVRCLSCGKPVSAYFNEYQRRVAD 26 (55)
T ss_dssp CSSSCSCTTSCCHHHHHHHHHHHHH
T ss_pred CCeecCCCCCChhHHHHHHHHHHHc
Confidence 347999999976 45666655443
No 90
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=23.27 E-value=42 Score=33.58 Aligned_cols=66 Identities=14% Similarity=0.242 Sum_probs=39.9
Q ss_pred HhhhcCCeEEEEccCCccc-cc--cccccc-C-CCCCCEEEEeeccCCC-Ccccch--hcCCchHH-HHHHHHHh
Q psy12429 127 LDKNRCDLLIVIGSSLKVR-PV--ALIPNS-L-PPSVPQILINRERLSH-LNFDVE--LLGDGDVI-IDTLCRAL 192 (268)
Q Consensus 127 ~~~~~aDlllviGTSl~V~-p~--~~l~~~-~-~~g~~~i~IN~~~t~~-~~~dl~--i~g~aD~v-l~~L~~~L 192 (268)
.++.+||++|++|+-.... |. ..+... . .+|+++|.|++..+.. ..+|++ |.=..|.. +..|+..|
T Consensus 174 ~d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~irPGtD~aL~~~m~~~i 248 (802)
T 3ml1_A 174 DDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGIIFKPQTDLAMLNYIANYI 248 (802)
T ss_dssp GGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEECCTTTHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEeccCCCHHHHHHHHHHHHH
Confidence 3578999999999986532 21 122221 1 3789999999998874 356665 34334433 33344433
No 91
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=22.95 E-value=37 Score=26.64 Aligned_cols=28 Identities=18% Similarity=0.631 Sum_probs=20.4
Q ss_pred ccccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 41 HGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 41 HG~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
-|.|.-.+|.+|++.+. ...+.|+ .|+.
T Consensus 42 ~g~L~~~rC~~CG~~~f----------PPr~~Cp--~C~s 69 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIFV----------PARSYCE--HCFV 69 (145)
T ss_dssp TTCCEEEECTTTCCEEE----------SCCSEET--TTTE
T ss_pred CCEEEEEEECCCCcEEe----------CCCCCCC--CCCC
Confidence 36778889999998652 1136799 9984
No 92
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.69 E-value=35 Score=23.55 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.1
Q ss_pred ccceeeeCCCCceech
Q psy12429 43 SFATASCTRCGHRVSA 58 (268)
Q Consensus 43 ~l~~~~C~~C~~~~~~ 58 (268)
.+.+.+|..|+..|+-
T Consensus 4 ~m~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 4 DEGKYECEACGYIYEP 19 (70)
T ss_dssp CSSCEEETTTCCEECT
T ss_pred CCceEEeCCCCEEEcC
Confidence 4667899999999864
No 93
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=22.25 E-value=1.7e+02 Score=24.87 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=32.1
Q ss_pred cCCCCCHHHHHHHHHhhh---cCCeEEEEccCCccccccccccc-CCCCCCEEEEeeccCC
Q psy12429 113 FGEGLPDSFHSAMTLDKN---RCDLLIVIGSSLKVRPVALIPNS-LPPSVPQILINRERLS 169 (268)
Q Consensus 113 FgE~~p~~~~~~~~~~~~---~aDlllviGTSl~V~p~~~l~~~-~~~g~~~i~IN~~~t~ 169 (268)
..+.-++...+.+...+. ++|.+|++++..... .+... ...|.|+|.+|.....
T Consensus 41 ~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~---~~~~~~~~~giPvV~~~~~~~~ 98 (350)
T 3h75_A 41 YAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAP---QILRLSQGSGIKLFIVNSPLTL 98 (350)
T ss_dssp ECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHH---HHHHHHTTSCCEEEEEESCCCT
T ss_pred ECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHH---HHHHHHHhCCCcEEEEcCCCCh
Confidence 333333333444555555 899999987443222 22333 3678999999987654
No 94
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=22.01 E-value=40 Score=26.36 Aligned_cols=27 Identities=19% Similarity=0.640 Sum_probs=19.6
Q ss_pred cccceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCCC
Q psy12429 42 GSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLS 80 (268)
Q Consensus 42 G~l~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~~ 80 (268)
|.|.-.+|.+|++.+. ...+.|+ .|++
T Consensus 43 grL~~~rC~~CG~~~~----------PPr~~Cp--~C~s 69 (145)
T 3irb_A 43 NKIIGSKCSKCGRIFV----------PARSYCE--HCFV 69 (145)
T ss_dssp TCCEEEECTTTCCEEE----------SCCSEET--TTTE
T ss_pred CeEEEEEeCCCCcEEc----------CchhhCc--CCCC
Confidence 6677789999998752 1136799 9984
No 95
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.81 E-value=55 Score=26.32 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=17.3
Q ss_pred ceeeeCCCCceechHHHHHHHhhCCCCCCCCCCCC
Q psy12429 45 ATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACL 79 (268)
Q Consensus 45 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~~~C~ 79 (268)
...+|..||..|.. .-+..|| .|+
T Consensus 137 ~~~~C~~CG~i~~~---------~~p~~CP--~Cg 160 (170)
T 3pwf_A 137 KVYICPICGYTAVD---------EAPEYCP--VCG 160 (170)
T ss_dssp CEEECTTTCCEEES---------CCCSBCT--TTC
T ss_pred CeeEeCCCCCeeCC---------CCCCCCC--CCC
Confidence 35679999998851 1234899 998
No 96
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=21.77 E-value=30 Score=34.87 Aligned_cols=49 Identities=8% Similarity=-0.001 Sum_probs=32.1
Q ss_pred hhhcCCeEEEEccCCcccccc-------cccc-cCCCCCCEEEEeeccCCCC-c-ccch
Q psy12429 128 DKNRCDLLIVIGSSLKVRPVA-------LIPN-SLPPSVPQILINRERLSHL-N-FDVE 176 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~p~~-------~l~~-~~~~g~~~i~IN~~~t~~~-~-~dl~ 176 (268)
.+.+||++|++|+-....|.. .+.. ...+|+++|.|++..+... . +|.+
T Consensus 205 ~~~~ad~il~~G~Np~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~ 263 (875)
T 1ti6_A 205 GLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKW 263 (875)
T ss_dssp HHHHCSEEEEESCCHHHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEE
T ss_pred HHhcCCEEEEECCChhhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEE
Confidence 468999999999987323331 1111 2257899999999887642 2 4654
No 97
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=21.72 E-value=33 Score=24.46 Aligned_cols=15 Identities=20% Similarity=0.691 Sum_probs=12.8
Q ss_pred cceeeeCCCCceech
Q psy12429 44 FATASCTRCGHRVSA 58 (268)
Q Consensus 44 l~~~~C~~C~~~~~~ 58 (268)
+...+|..|+..|+-
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 568899999999864
No 98
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.35 E-value=75 Score=19.99 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=23.2
Q ss_pred ccccceeeeCCCCceechHHHHHHHhhCC-CCCCCCCCCCC
Q psy12429 41 HGSFATASCTRCGHRVSAEAIKADVFQQR-IPLCPSPACLS 80 (268)
Q Consensus 41 HG~l~~~~C~~C~~~~~~~~~~~~~~~~~-~p~C~~~~C~~ 80 (268)
|-.-....|..|++.|........+..++ .-.|+ .|+.
T Consensus 9 H~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~--~C~k 47 (62)
T 1vd4_A 9 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCT--FCHT 47 (62)
T ss_dssp CCSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCS--SSCC
T ss_pred cCCCCCccCCCCCchhccHHHhHhhcCCCCCEECC--CCCC
Confidence 44445678999999887644322222222 34788 8973
No 99
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.02 E-value=1.1e+02 Score=17.34 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=22.4
Q ss_pred eccccceeeeCCCCceechHH-HHHHH--hh-CCCCCCCCCCCC
Q psy12429 40 CHGSFATASCTRCGHRVSAEA-IKADV--FQ-QRIPLCPSPACL 79 (268)
Q Consensus 40 lHG~l~~~~C~~C~~~~~~~~-~~~~~--~~-~~~p~C~~~~C~ 79 (268)
.|-.-....|..|++.|.... +...+ .. .....|+ .||
T Consensus 4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~--~cg 45 (45)
T 2epq_A 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP--SSG 45 (45)
T ss_dssp CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCC--CCC
T ss_pred CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCc--CCC
Confidence 455556678999999876533 32222 22 2345677 774
No 100
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=20.86 E-value=50 Score=33.82 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=32.8
Q ss_pred hhhcCCeEEEEccCCcccc--ccc-ccccCCCCCCEEEEeeccCCC-Ccccchh
Q psy12429 128 DKNRCDLLIVIGSSLKVRP--VAL-IPNSLPPSVPQILINRERLSH-LNFDVEL 177 (268)
Q Consensus 128 ~~~~aDlllviGTSl~V~p--~~~-l~~~~~~g~~~i~IN~~~t~~-~~~dl~i 177 (268)
++.+||++|++|+-....- ... +.+...+|+++|.|++..+.. ..+|.+|
T Consensus 243 D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl 296 (976)
T 2ivf_A 243 NLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHV 296 (976)
T ss_dssp GGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEE
T ss_pred hHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEe
Confidence 3568999999998764321 111 222225789999999988764 3567654
No 101
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.26 E-value=88 Score=23.80 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeec---cccceeeeCCCCceech
Q psy12429 5 DAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH---GSFATASCTRCGHRVSA 58 (268)
Q Consensus 5 H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielH---G~l~~~~C~~C~~~~~~ 58 (268)
.+.|..|++.|.+.++-.. || ...+++- +.=+.+.|.+||+.++.
T Consensus 52 YR~L~~L~e~Glv~~~~~~--~g-------~~~Y~~~~~~~~H~HliC~~Cg~v~~~ 99 (139)
T 3mwm_A 52 YRTLQSLADAGEVDVLRTA--EG-------ESVYRRCSTGDHHHHLVCRACGKAVEV 99 (139)
T ss_dssp HHHHHHHHHTTSSEEEECT--TS-------CEEEECCSCSSCCEEEEETTTCCEEEE
T ss_pred HHHHHHHHHCCCEEEEEcC--CC-------ceEEEECCCCCCccEEEECCCCCEeec
Confidence 4678889999988776442 11 1223321 12245899999998654
No 102
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.23 E-value=63 Score=24.87 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCcceeEecCccchHhhcCCCCeEeec--cccceeeeCCCCceech
Q psy12429 5 DAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECH--GSFATASCTRCGHRVSA 58 (268)
Q Consensus 5 H~~La~L~~~g~l~~viTQNIDgLh~~AG~~~vielH--G~l~~~~C~~C~~~~~~ 58 (268)
.+.|..|++.|.+.++-..| | ...+++. +.=..+.|.+||+.++.
T Consensus 56 YR~L~~L~e~Glv~~i~~~~--~-------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (145)
T 3eyy_A 56 YRTLELLEELGLVSHAHLGH--G-------APTYHLADRHHHIHLVCRDCTNVIEA 102 (145)
T ss_dssp HHHHHHHHHHTSEEEEECGG--G-------CEEEEETTSCCSEEEEESSSSCEEEE
T ss_pred HHHHHHHHHCCcEEEEEeCC--C-------ceEEEeCCCCCceEEEECCCCCEEEe
Confidence 46788899999887765432 1 1223432 22346899999987654
Done!