RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12429
(268 letters)
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes
human sirtuins SIRT1-3 and yeast Hst1-4; and are members
of the SIR2 family of proteins, silent information
regulator 2 (Sir2) enzymes which catalyze NAD+-dependent
protein/histone deacetylation. Sir2 proteins have been
shown to regulate gene silencing, DNA repair, and life
span. The most-studied function, gene silencing,
involves the inactivation of chromosome domains
containing key regulatory genes by packaging them into a
specialized chromatin structure that is inaccessible to
DNA-binding proteins. The nuclear SIRT1 has been shown
to target the p53 tumor suppressor protein for
deacetylation to suppress DNA damage, and the
cytoplasmic SIRT2 homolog has been shown to target
alpha-tubulin for deacetylation for the maintenance of
cell integrity.
Length = 235
Score = 235 bits (601), Expect = 6e-78
Identities = 90/188 (47%), Positives = 113/188 (60%), Gaps = 31/188 (16%)
Query: 6 AFIKMLERHGKLLRNYSQNIDTLEQVAGIEN--VIECHGSFATASCTRCGHRVSAEAIKA 63
FIK+LE G LLRNY+QNIDTLE+VAG+ + +IE HGSFATA C +C H+ + ++
Sbjct: 74 YFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMRE 133
Query: 64 DVFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHS 123
D+F Q +P CP C G++KPDIVFFGE LP F S
Sbjct: 134 DIFNQEVPKCPR--C------------------------GGLVKPDIVFFGESLPSRFFS 167
Query: 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLN---FDVELLGD 180
M DK DLLIVIG+SLKV P A +P+ +P VP++LINRE + HL FDV LLGD
Sbjct: 168 HMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGD 227
Query: 181 GDVIIDTL 188
D + L
Sbjct: 228 CDDGVREL 235
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 176 bits (449), Expect = 4e-55
Identities = 62/176 (35%), Positives = 87/176 (49%), Gaps = 29/176 (16%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVF 66
+ LER GKL R +QN+D L Q AG VIE HGS CT+CG + ++AD+
Sbjct: 70 ALAELERKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCTKCGKEYPRDELQADID 129
Query: 67 QQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMT 126
++ +P C P C G+++PD+VFFGE LP+ A
Sbjct: 130 REEVPRC--PKC------------------------GGLLRPDVVFFGESLPEELDEAAE 163
Query: 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLP-PSVPQILINRERLSHLN-FDVELLGD 180
+ DLL+VIG+SL+V P A +P P P ++IN E D+ +LGD
Sbjct: 164 ALA-KADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADRKADLVILGD 218
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 165 bits (421), Expect = 2e-51
Identities = 58/141 (41%), Positives = 71/141 (50%), Gaps = 27/141 (19%)
Query: 6 AFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADV 65
FI LE GKLLR +QNID L + AG + V+E HGSFA A C C + + E + +
Sbjct: 64 YFIAELEDKGKLLRLITQNIDGLHERAGSKKVVELHGSFAKARCVSCHKKYTGETLPERI 123
Query: 66 FQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAM 125
++P C C G++KPDIVFFGE LPD F A
Sbjct: 124 DAAKVPKCDK--C------------------------GGLLKPDIVFFGENLPDKFFRAY 157
Query: 126 TLDKNRCDLLIVIGSSLKVRP 146
D DLLIVIG+SLKV P
Sbjct: 158 E-DVEEADLLIVIGTSLKVYP 177
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 138 bits (350), Expect = 5e-40
Identities = 55/145 (37%), Positives = 71/145 (48%), Gaps = 25/145 (17%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVF 66
+ LE GKLLR +QNID L + AG +NVIE HGS C++CG++ E + +
Sbjct: 83 ALAELEDKGKLLRIITQNIDGLHERAGSKNVIELHGSLKRVRCSKCGNQYYDEDVIKFIE 142
Query: 67 QQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMT 126
IP C P C V++PD+V+FGE LP SF
Sbjct: 143 DGLIPRC--PKCGGP-----------------------VLRPDVVWFGEPLPASFLDEAL 177
Query: 127 LDKNRCDLLIVIGSSLKVRPVALIP 151
DLLIVIG+SLKV P A +P
Sbjct: 178 EALKEADLLIVIGTSLKVYPAAGLP 202
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer. Also included in this
superfamily is a group of uncharacterized Sir2-like
proteins which lack certain key catalytic residues and
conserved zinc binding cysteines.
Length = 222
Score = 135 bits (341), Expect = 6e-39
Identities = 58/181 (32%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAG--IENVIECHGSFATASCTRCGHRVSAEAIKAD 64
+ LER GKL R +QN+D L + AG VIE HGS CT CG D
Sbjct: 72 ALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYP-----RD 126
Query: 65 VFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDS-FHS 123
+R P C G+++PD+V FGE LP F
Sbjct: 127 EVLEREKPPRCPKC------------------------GGLLRPDVVDFGEALPKEWFDR 162
Query: 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRERLSHLN---FDVELLG 179
A+ DL++VIG+SL V P A + P P ++INRE D+ +LG
Sbjct: 163 ALEALL-EADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLVILG 221
Query: 180 D 180
D
Sbjct: 222 D 222
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 116 bits (291), Expect = 2e-30
Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 29/169 (17%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKAD 64
FI++L G+LLR +QNID LE+ AG+ ++E HGSF+ ASC C E +
Sbjct: 106 FIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLE 165
Query: 65 VFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSA 124
++P C + G++KPD+VFFGE LPD+F +
Sbjct: 166 ARSGKVPHCSTCG--------------------------GIVKPDVVFFGENLPDAFFN- 198
Query: 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNF 173
+ D +LL++IG+SL+V P AL+ +P VP++L N ER+ L F
Sbjct: 199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLERVGGLMF 247
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 105 bits (264), Expect = 2e-27
Identities = 59/177 (33%), Positives = 80/177 (45%), Gaps = 42/177 (23%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
LE+ GKL+ +QNID L + AG +NVIE HGS A CT+CG + + +
Sbjct: 87 LEKLGKLVTVITQNIDGLHERAGSKNVIELHGSLLRARCTKCGQTYDLD----EYLKPEP 142
Query: 71 PLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLP----DSFHSAMT 126
P C P C G+++PD+V FGE LP D + A+
Sbjct: 143 PRC--PKC------------------------GGILRPDVVLFGEMLPELAIDEAYEALE 176
Query: 127 LDKNRCDLLIVIGSSLKVRPVALIPN-SLPPSVPQILINRER--LSHLNFDVELLGD 180
DL IVIG+SL V P A +P + + IN E L L FD+ + G
Sbjct: 177 ----EADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSL-FDLVIHGK 228
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which
includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus
solfataricus ssSir2, and several bacterial homologs; and
are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation. Sir2
proteins have been shown to regulate gene silencing, DNA
repair, metabolic enzymes, and life span. The Sir2
homolog from the archaea Sulfolobus solftaricus
deacetylates the non-specific DNA protein Alba to
mediate transcription repression.
Length = 222
Score = 104 bits (261), Expect = 4e-27
Identities = 50/145 (34%), Positives = 67/145 (46%), Gaps = 27/145 (18%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVF 66
F+ LE+ G + +QNID L Q AG +NVIE HG+ TA C CG + E +K
Sbjct: 74 FLAELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYCVNCGSKYDLEEVK-YAK 132
Query: 67 QQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMT 126
+ +P CP C G+++PD+V FGE LP +
Sbjct: 133 KHEVPRCPK--C------------------------GGIIRPDVVLFGEPLPQALLREAI 166
Query: 127 LDKNRCDLLIVIGSSLKVRPVALIP 151
DL IV+GSSL V P L+P
Sbjct: 167 EAAKEADLFIVLGSSLVVYPANLLP 191
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional.
Length = 244
Score = 91.0 bits (226), Expect = 7e-22
Identities = 46/142 (32%), Positives = 64/142 (45%), Gaps = 26/142 (18%)
Query: 10 MLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQR 69
LE G + +QNID L Q AG + VIE HG+ C RCG R + E + + +
Sbjct: 83 KLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGNVEEYYCVRCGKRYTVEDVIEKLEKSD 142
Query: 70 IPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDK 129
+P C C G+++P+IVFFGE LP
Sbjct: 143 VPRCDD--C------------------------SGLIRPNIVFFGEALPQDALREAIRLS 176
Query: 130 NRCDLLIVIGSSLKVRPVALIP 151
++ L+IV+GSSL V P A +P
Sbjct: 177 SKASLMIVMGSSLVVYPAAELP 198
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2)
which includes human sirtuin SIRT4 and several bacterial
homologs; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 260
Score = 83.1 bits (206), Expect = 8e-19
Identities = 44/136 (32%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
LE G+L +QN+D L AG NV+E HGS C CG R + D +
Sbjct: 83 LEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTPRAEL-QDRLEALN 141
Query: 71 P-LCPSPACLSSPTSSDISVPAGESSSLPPTPS-RGVMKPDIVFFGEGLPDSFHSAMTLD 128
P A + D+ +P GV+KPD+VFFGE +P
Sbjct: 142 PGFAEQAAGQAPDGDVDLEDEQVAGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAAR 201
Query: 129 KNRCDLLIVIGSSLKV 144
D L+V+GSSL V
Sbjct: 202 LAEADALLVLGSSLMV 217
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli
CobB; and are members of the SIR2 family of proteins,
silent information regulator 2 (Sir2) enzymes which
catalyze NAD+-dependent protein/histone deacetylation.
Sir2 proteins have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
CobB is a bacterial sirtuin that deacetylates acetyl-CoA
synthetase at an active site lysine to stimulate its
enzymatic activity. .
Length = 224
Score = 81.9 bits (203), Expect = 1e-18
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 33/159 (20%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHR-VSAEAIKADVFQQR 69
LER + +QN+D L + AG NVIE HGS C+ CG+ + E I ++
Sbjct: 74 LERRLPNVLLITQNVDGLHERAGSRNVIELHGSLFRVRCSSCGYVGENNEEIP----EEE 129
Query: 70 IPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDK 129
+P CP C G+++P +V+FGE LP + A+
Sbjct: 130 LPRCP--KC------------------------GGLLRPGVVWFGESLPLALLEAVEALA 163
Query: 130 NRCDLLIVIGSSLKVRPVALIPN-SLPPSVPQILINRER 167
+ DL +VIG+S V P A +P + I IN E
Sbjct: 164 -KADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEP 201
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4)
which includes human sirtuin SIRT6, SIRT7, and several
bacterial homologs; and are members of the SIR2 family
of proteins, silent information regulator 2 (Sir2)
enzymes which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 206
Score = 77.3 bits (191), Expect = 3e-17
Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 28/162 (17%)
Query: 8 IKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKADV 65
+ LER G L SQN+D L +G+ E + E HG+ C CG E ++ DV
Sbjct: 55 LVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCG----PEYVRDDV 110
Query: 66 FQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAM 125
+ R C G++K IV FGE LP
Sbjct: 111 VETRGDKETGRRC---------------------HACGGILKDTIVDFGERLPPENWMGA 149
Query: 126 TLDKNRCDLLIVIGSSLKVRPVALIPN-SLPPSVPQILINRE 166
R DL + +G+SL+V P A +P + +++N +
Sbjct: 150 AAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein;
Provisional.
Length = 271
Score = 75.0 bits (184), Expect = 8e-16
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 29/144 (20%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAI---KADVFQ 67
LE G L +QN+D L + +G VI HGS A C C + I K F
Sbjct: 102 LESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFM 161
Query: 68 QRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTL 127
++P P C P G+ KP+++ FGE +P S
Sbjct: 162 HQLP----PEC----------------------PCGGIFKPNVILFGEVIPKSLLKQAEK 195
Query: 128 DKNRCDLLIVIGSSLKVRPVALIP 151
+ ++CDLL+V+G+S V +
Sbjct: 196 EIDKCDLLLVVGTSSSVSTATNLC 219
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional.
Length = 285
Score = 74.7 bits (184), Expect = 1e-15
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
L G++ R +QN+D L Q AG +VIE HG C CG R I+ +
Sbjct: 93 LGAAGRIERLVTQNVDGLHQRAGSRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANP 152
Query: 71 PLCPSPACLSSPTSSDISVPAGESSSLPPTPS-RGVMKPDIVFFGEGLPDSFHSAMTLDK 129
A + +D+ A + +P P+ G++KPD+VFFGE +P +A
Sbjct: 153 EWLALEAAPAPDGDADLEWAAFDHFRVPACPACGGILKPDVVFFGENVPRERVAAARAAL 212
Query: 130 NRCDLLIVIGSSLKV 144
+ D ++V+GSSL V
Sbjct: 213 DAADAVLVVGSSLMV 227
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs
from several gram positive bacterial species and
Fusobacteria; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 225
Score = 72.0 bits (177), Expect = 4e-15
Identities = 49/178 (27%), Positives = 71/178 (39%), Gaps = 46/178 (25%)
Query: 8 IKM--LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADV 65
KM LE+ G L +QNID L Q AG +NV+E HGS CT CG V E
Sbjct: 79 QKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEEYL--- 134
Query: 66 FQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAM 125
+ P GV++PDIV + E L +
Sbjct: 135 ---KSPYH--------------------------AKCGGVIRPDIVLYEEML-----NES 160
Query: 126 TLDK-----NRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDVELL 178
+++ + DLL+++G+S V P A + + I IN+E L+ L+
Sbjct: 161 VIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQ-LDSPATLV 217
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 49.8 bits (119), Expect = 3e-07
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 36/133 (27%)
Query: 22 SQNIDTLEQVAGIENVIECHGSFATASCTRCGHR-VSAEAIKADVFQQRIPLCPSPACLS 80
+QN+D L + AG +V+ HG CT GH E + C C+
Sbjct: 93 TQNVDNLHERAGSTHVLHMHGELLKVRCTATGHVFDWTEDVVHGS-----SRCKCCGCVG 147
Query: 81 SPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGE-GLP-DSFHSAMTLDKNRCDLLIVI 138
+ ++P IV+FGE L D S M ++ DL + +
Sbjct: 148 T------------------------LRPHIVWFGEMPLYMDEIESVM----SKTDLFVAV 179
Query: 139 GSSLKVRPVALIP 151
G+S V P A
Sbjct: 180 GTSGNVYPAAGFV 192
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 36.5 bits (85), Expect = 0.012
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 116 GLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNF-D 174
G+ + + L++ DLL+ +G+ R + P ++ I I+ + D
Sbjct: 253 GMHGTKAANEALEE--ADLLLAVGARFDDRVTGYSGFAPPAAIIHIDIDPAEIGKNYPVD 310
Query: 175 VELLGDGDVIIDTLCRALGESWTGTLLELYNSL 207
V ++GD TL AL E L
Sbjct: 311 VPIVGD---AKATL-EALLEELKPERAAWLEEL 339
>gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family
domain in Subtilisin-like proteins. This family is a
member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 291
Score = 30.3 bits (69), Expect = 0.82
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 81 SPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFG 114
+ S+ PAG ++S P G +KPD+V FG
Sbjct: 188 ARYSAVGPAPAGATTSSGPGS-PGPIKPDVVAFG 220
>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain,
uncharacterized subfamily 1. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 264
Score = 29.9 bits (68), Expect = 1.4
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 80 SSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGL 117
+ P IS SS PT G +KPD+V GE +
Sbjct: 173 NGPHDDGIS----YFSSRGPTGD-GRIKPDVVAPGENI 205
>gnl|CDD|218374 pfam05003, DUF668, Protein of unknown function (DUF668).
Uncharacterized plant protein.
Length = 87
Score = 27.3 bits (61), Expect = 2.8
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 202 ELYNSLPPSVPQILINRERLSHLNFDVE 229
+LY LP ++ L R +L D +
Sbjct: 35 DLYQMLPATIRAAL--RSKLKPYLKDYD 60
>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in
Kp43 proteases. Kp43 proteases are members of the
peptidase S8 or Subtilase clan of proteases. They have
an Asp/His/Ser catalytic triad similar to that found in
trypsin-like proteases, but do not share their
three-dimensional structure (an example of convergent
evolution). Kp43 is topologically similar to kexin and
furin both of which are proprotein convertases, but
differ in amino acids sequence and the position of its
C-terminal barrel. Kp43 has 3 Ca2+ binding sites that
differ from the corresponding sites in the other known
subtilisin-like proteases. KP-43 protease is known to
be an oxidation-resistant protease when compared with
the other subtilisin-like proteases.
Length = 293
Score = 28.8 bits (65), Expect = 3.1
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 81 SPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEG 116
SD S SS PT G +KPD+V G G
Sbjct: 191 GLGQSDNSDTVASFSSRGPTYD-GRIKPDLVAPGTG 225
>gnl|CDD|233936 TIGR02578, cas_TM1811_Csm1, CRISPR-associated protein Cas10/Csm1,
subtype III-A/MTUBE. The family is designated Csm2, for
CRISPR/Cas Subtype Mtube Protein 2. A typical example is
TM1811 from Thermotoga maritima. CRISPR are Clustered
Regularly Interspaced Short Palindromic Repeats. This
protein family belongs to a conserved gene cluster
regularly found near CRISPR repeats [Mobile and
extrachromosomal element functions, Other].
Length = 648
Score = 28.5 bits (64), Expect = 3.9
Identities = 26/126 (20%), Positives = 37/126 (29%), Gaps = 10/126 (7%)
Query: 7 FIKMLER-HGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADV 65
F ++ H KL R + L AG SF +C CG SA I+
Sbjct: 357 FATKRKKLHEKLERAKKRRFSELLSTAGNPKSG--FYSFGNNTCDICGRAASAREIEDL- 413
Query: 66 FQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAM 125
LC L +D S + + +P IV F D+
Sbjct: 414 --ALCDLCAEEYNLGEALRADRSFVILDEAGIPKLDFEK----YIVLFAREADDAKKLEQ 467
Query: 126 TLDKNR 131
+
Sbjct: 468 LSQEGY 473
>gnl|CDD|215325 PLN02605, PLN02605, monogalactosyldiacylglycerol synthase.
Length = 382
Score = 28.4 bits (64), Expect = 4.0
Identities = 12/16 (75%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 53 GHRVSAEAIKADVFQQ 68
GHR SAEAIK D FQ
Sbjct: 11 GHRASAEAIK-DAFQL 25
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 28.0 bits (63), Expect = 5.6
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 132 CDLLIVIGSSLKVRPVALIPNSLPPSVP--QILINRERLSH-LNFDVELLGDGDVIIDTL 188
DLLI++G++ LP QI + + +V L+GD + L
Sbjct: 268 ADLLIMVGTNYPYVDY------LPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQL 321
>gnl|CDD|132173 TIGR03129, one_C_dehyd_B, formylmethanofuran dehydrogenase subunit
B. Members of this largely archaeal protein family are
subunit B of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit C. Note
that this model does not distinguish tungsten (FwdB)
from molybdenum-containing (FmdB) forms of this enzyme.
Length = 421
Score = 27.6 bits (62), Expect = 6.8
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 115 EGLPDSFHSAMTLD--KNRCDLLIVIGS 140
L + + TL KNR D++I G+
Sbjct: 119 LALQEVGWPSCTLGEVKNRADVIIYWGT 146
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 26.7 bits (60), Expect = 7.0
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 130 NRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRERLSHLNF-DVELLGD 180
DL++ IG+ R +P P + + I I+ + DV ++GD
Sbjct: 76 EEADLVLAIGARFDDRGTGSLPEFAPDAKIIHIDIDPAEIGKNYPVDVPIVGD 128
>gnl|CDD|223324 COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases
[Carbohydrate transport and metabolism].
Length = 473
Score = 27.7 bits (62), Expect = 8.0
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 98 PPTPSRGVMKPDIVFFGEGLPDSFHSA 124
PT R MKP IV FG G +FH A
Sbjct: 6 RPTYDRTQMKPGIVHFGAG---NFHRA 29
>gnl|CDD|224348 COG1431, COG1431, Argonaute homolog, implicated in RNA metabolism
[Translation, ribosomal structure and biogenesis].
Length = 685
Score = 27.5 bits (61), Expect = 8.2
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 17/127 (13%)
Query: 157 SVPQILINRERLSHLN-----FDVELLGDGDVII-------DTLCRALGESWTGTLLELY 204
V IL NR+ L +++ F +L G ++ D + G++ + L+
Sbjct: 270 EVYDILSNRKLLFYIDNLLVQFVSKLRGKPWILNVDPEKGPDIVIGTEGKTTIDNVN-LF 328
Query: 205 NSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCRALGESWTVRLKIEK----VSS 260
LP P + +S + D ELL I + S + K+E V+
Sbjct: 329 CYLPYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVEGLTLHVAG 388
Query: 261 PREHLKV 267
R +K
Sbjct: 389 KRPKMKD 395
>gnl|CDD|214857 smart00853, MutL_C, MutL C terminal dimerisation domain. MutL and
MutS are key components of the DNA repair machinery that
corrects replication errors. MutS recognises mispaired
or unpaired bases in a DNA duplex and in the presence of
ATP, recruits MutL to form a DNA signaling complex for
repair. The N terminal region of MutL contains the
ATPase domain and the C terminal is involved in
dimerisation.
Length = 140
Score = 26.5 bits (59), Expect = 9.5
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 149 LIPNSLPPSVPQILI---NRERLSHLNFDVELLGDGDVIIDTLCRALGES----WTGTLL 201
LIP L S + + + E L L F++E+ G +I+ ++ L + LL
Sbjct: 48 LIPVRLELSPQEAALLEEHLELLRQLGFELEIFGPQSLILRSVPALLRQQNLQKLIPELL 107
Query: 202 ELYNSLPPSVPQILINR 218
+L + + +
Sbjct: 108 DLLSDEEENARPSRLEA 124
>gnl|CDD|178132 PLN02517, PLN02517, phosphatidylcholine-sterol O-acyltransferase.
Length = 642
Score = 27.4 bits (61), Expect = 10.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 185 IDTLCRALG---ESWTGTLLELYNSLPPSVPQ 213
+D+ C +G +W LL LYN++P S PQ
Sbjct: 18 VDSCCWFIGYICTAWW-LLLFLYNAMPASFPQ 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,150,924
Number of extensions: 1375036
Number of successful extensions: 1383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1353
Number of HSP's successfully gapped: 49
Length of query: 268
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 173
Effective length of database: 6,723,972
Effective search space: 1163247156
Effective search space used: 1163247156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)