RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12429
(268 letters)
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 227 bits (580), Expect = 2e-73
Identities = 90/209 (43%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKAD 64
FIKML+ GKLLRNY+QNID LE AGI + +++CHGSFATA+C C + E I
Sbjct: 120 FIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNK 179
Query: 65 VFQQRIPLCPSPACLSSPTSSD-------ISVPAGESSSLPPTPSR--GVMKPDIVFFGE 115
+ +PLCP + ++ G S PP GV+KPDI FFGE
Sbjct: 180 IRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGE 239
Query: 116 GLPDSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDV 175
LP+ FH ++ D CDLLI IG+SLKV PV+ I N +P VPQ+LINR+ + H FD+
Sbjct: 240 ALPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDL 299
Query: 176 ELLGDGDVIIDTLCRALGESWTGTLLELY 204
LLG D I + + G WT +
Sbjct: 300 SLLGYCDDIAAMVAQKCG--WTIPHKKWN 326
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 211 bits (539), Expect = 5e-68
Identities = 78/206 (37%), Positives = 111/206 (53%), Gaps = 36/206 (17%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKAD 64
F+++L G LLR Y+QNID LE+V+GI ++E HG+FA+A+CT C E I+AD
Sbjct: 98 FLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRAD 157
Query: 65 VFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSA 124
V R+P CP C GV+KPDIVFFGE LP F
Sbjct: 158 VMADRVPRCP--VC------------------------TGVVKPDIVFFGEPLPQRFLLH 191
Query: 125 MTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNF-----DVELLG 179
+ D DLL+++G+SL+V P A + ++ SVP++LINR+ + L + DV LG
Sbjct: 192 VV-DFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLG 250
Query: 180 DGDVIIDTLCRALGESWTGTLLELYN 205
D +++L LG WT + +L
Sbjct: 251 DVVHGVESLVELLG--WTEEMRDLVQ 274
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 211 bits (539), Expect = 1e-67
Identities = 73/224 (32%), Positives = 107/224 (47%), Gaps = 53/224 (23%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCT--RCGHRVSAEAIK 62
F+++L+ G LLR Y+QNIDTLE++AG+ E+++E HG+F T+ C C H +K
Sbjct: 118 FMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMK 177
Query: 63 ADVFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFH 122
+F + P C C + ++KPDIVFFGE LP F
Sbjct: 178 EKIFSEVTPKCED--C------------------------QSLVKPDIVFFGESLPARFF 211
Query: 123 SAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLN---------- 172
S M D + DLL+V+G+SL+V+P A + + P S P++LIN+E+ +
Sbjct: 212 SCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLG 271
Query: 173 -----------FDVELLGDGDVIIDTLCRALGESWTGTLLELYN 205
DV LG+ D L LG W L +L
Sbjct: 272 GGMDFDSKKAYRDVAWLGECDQGCLALAELLG--WKKELEDLVR 313
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 201 bits (513), Expect = 3e-64
Identities = 61/221 (27%), Positives = 90/221 (40%), Gaps = 47/221 (21%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKAD 64
+K+ + L R Y+QNIDTLE+ AG+ + +IE HGSFA C CG + K+
Sbjct: 95 LLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSK 154
Query: 65 VFQQRIPLCPS-PACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHS 123
+ + I C ++KP IVFFGE LPDSF
Sbjct: 155 LAEHPIKDFVKCDVC------------------------GELVKPAIVFFGEDLPDSFSE 190
Query: 124 AMTLD-------------KNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH 170
D + L+IV+G+SL V P A +P +P V ++L N E +
Sbjct: 191 TWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGD 250
Query: 171 LN-----FDVELLGDGDVIIDTLCRALGESWTGTLLELYNS 206
D+ + D + L LG W ++ +
Sbjct: 251 FKANKRPTDLIVHQYSDEFAEQLVEELG--WQEDFEKILTA 289
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 199 bits (508), Expect = 1e-62
Identities = 61/221 (27%), Positives = 90/221 (40%), Gaps = 47/221 (21%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKAD 64
+K+ + L R Y+QNIDTLE+ AG+ + +IE HGSFA C CG + K+
Sbjct: 103 LLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSK 162
Query: 65 VFQQRIPLCPS-PACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHS 123
+ + I C ++KP IVFFGE LPDSF
Sbjct: 163 LAEHPIKDFVKCDVC------------------------GELVKPAIVFFGEDLPDSFSE 198
Query: 124 AMTLD-------------KNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSH 170
D + L+IV+G+SL V P A +P +P V ++L N E +
Sbjct: 199 TWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGD 258
Query: 171 LN-----FDVELLGDGDVIIDTLCRALGESWTGTLLELYNS 206
D+ + D + L LG W ++ +
Sbjct: 259 FKANKRPTDLIVHQYSDEFAEQLVEELG--WQEDFEKILTA 297
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 190 bits (484), Expect = 3e-60
Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 30/190 (15%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVF 66
+ LE G + +QNID L Q AG + VIE HG+ C RC + + E + +
Sbjct: 82 LLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLE 141
Query: 67 QQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMT 126
+PLC C +++P+IVFFGE LP
Sbjct: 142 SSDVPLC--DDC------------------------NSLIRPNIVFFGENLPQDALREAI 175
Query: 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRE--RLSHLNFDVELLGDGDV 183
+R L+IV+GSSL V P A +P S +++N + ++ D
Sbjct: 176 GLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDI-ATLKYNMDVVE 234
Query: 184 IIDTLCRALG 193
+ G
Sbjct: 235 FARRVMEEGG 244
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 178 bits (454), Expect = 6e-55
Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 28/215 (13%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKAD 64
+ LER G L SQN+D L +G + + E HG+ C +C + + +
Sbjct: 97 ALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGT 156
Query: 65 VFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPS-RGVMKPDIVFFGEGLPDSFHS 123
+ + + + RG ++ I+ + + LPD +
Sbjct: 157 MGLKATG------------------RLCTVAKARGLRACRGELRDTILDWEDSLPDRDLA 198
Query: 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQ-ILINRE--RLSHLNFDVELLGD 180
DL I +G+SL++RP +P + + +++N + + D+ + G
Sbjct: 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRH-ADLRIHGY 257
Query: 181 GDVIIDTLCRALG---ESWTGTLLELYNSLPPSVP 212
D ++ L + LG +W G + P P
Sbjct: 258 VDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRP 292
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 175 bits (446), Expect = 2e-53
Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGI--ENVIECHGSFATASCTRCGHRVSAEAIKAD 64
+ LER G L SQN+D L +G + + E HG+ C +C + + +
Sbjct: 97 ALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGT 156
Query: 65 VFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPS-RGVMKPDIVFFGEGLPDSFHS 123
+ + + + RG ++ I+ + + LPD +
Sbjct: 157 MGLKATG------------------RLCTVAKARGLRACRGELRDTILDWEDSLPDRDLA 198
Query: 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQ-ILINRERLSHLN-FDVELLGDG 181
DL I +G+SL++RP +P + + +++N + H D+ + G
Sbjct: 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYV 258
Query: 182 DVIIDTLCRALG 193
D ++ L LG
Sbjct: 259 DEVMTRLMEHLG 270
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 148 bits (376), Expect = 6e-44
Identities = 51/191 (26%), Positives = 72/191 (37%), Gaps = 29/191 (15%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVF 66
I LER G + +QNID L Q AG V+E HGS C C D
Sbjct: 84 AIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFN 143
Query: 67 QQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMT 126
+ IP C C +KP +V FGE LP
Sbjct: 144 KGEIPRC--RKC-----------------------GSYYVKPRVVLFGEPLPQRTLFEAI 178
Query: 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRE--RLSHLNFDVELLGDGDV 183
+ CD +V+GSSL V P A +P + I++N E + FDV+++G
Sbjct: 179 EEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPI-FDVKIIGKAGE 237
Query: 184 IIDTLCRALGE 194
++ + +
Sbjct: 238 VLPKIVEEVKR 248
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 134 bits (340), Expect = 3e-38
Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 34/196 (17%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAI----K 62
+ LE G L +QN+D L + +G VI HG+ A C C V I
Sbjct: 115 ALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIMLQKT 174
Query: 63 ADVFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFH 122
+ Q P CP C G+ KP+I+ FGE +
Sbjct: 175 SHFMHQLPPECP---C------------------------GGIFKPNIILFGEVVSSDLL 207
Query: 123 SAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRE--RLSHLNFDVELLG 179
+ +CDLL+VIG+S V + + + IN +++ D +
Sbjct: 208 KEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCA 267
Query: 180 DGDVIIDTLCRALGES 195
+ G S
Sbjct: 268 KFSELTKVANILKGSS 283
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 109 bits (275), Expect = 5e-29
Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 35/189 (18%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
LER G L +QN+D L + AG NVI HGS CT C + E+ +
Sbjct: 86 LERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKI---PPL 142
Query: 71 PLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLP-DSFHSAMTLDK 129
P C C +++P +V+ GE LP D AM
Sbjct: 143 PKCD--KC------------------------GSLLRPGVVWAGEMLPPDVLDRAMRE-V 175
Query: 130 NRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRER--LSHLNFDVELLGDGDVIID 186
R D++IV G+S V+P A +P + I IN + L+ + D L G ++D
Sbjct: 176 ERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPI-ADYSLRGKAGEVMD 234
Query: 187 TLCRALGES 195
L R + ++
Sbjct: 235 ELVRHVRKA 243
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 105 bits (265), Expect = 8e-28
Identities = 37/187 (19%), Positives = 58/187 (31%), Gaps = 35/187 (18%)
Query: 9 KMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQ 68
K+ + G +QNID L + AG NVI HG C++ G +
Sbjct: 76 KLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG-----DVT 130
Query: 69 RIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMTLD 128
C ++P +V+FGE M L
Sbjct: 131 PEDKCHCCQF------------------------PAPLRPHVVWFGEMPLGMDEIYMALS 166
Query: 129 KNRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRER--LSHLNFDVELLGDGDVII 185
D+ I IG+S V P A + + +N E + + F + G ++
Sbjct: 167 M--ADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNE-FAEKYYGPASQVV 223
Query: 186 DTLCRAL 192
L
Sbjct: 224 PEFVEKL 230
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 101 bits (254), Expect = 7e-26
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 35/185 (18%)
Query: 11 LERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVFQQRI 70
L + G+ + +QNID L + AG +N++E HGS CT CG +
Sbjct: 99 LGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENY---------KS 149
Query: 71 PLCPSPACLSSPTSSDISVPAGESSSLPPTPSR---GVMKPDIVFFGEGLPDSFHSAMTL 127
P+CP+ + +P + LP G+++P +V+FGE L L
Sbjct: 150 PICPALSGKGAPE-PGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLD-----PAIL 203
Query: 128 DK-----NRCDLLIVIGSSLKVRPVALIPNSLPPSVPQ-----ILINRE--RLSHLNFDV 175
++ CDL +V+G+S V P A P V N E ++ F
Sbjct: 204 EEVDRELAHCDLCLVVGTSSVVYPAA----MFAPQVAARGVPVAEFNTETTPATNR-FRF 258
Query: 176 ELLGD 180
G
Sbjct: 259 HFQGP 263
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 2e-07
Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 86/243 (35%)
Query: 54 HRVSAEAIKADVF------QQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTP------ 101
+AI +F + P P P+ + S+ E P+P
Sbjct: 293 FVSVRKAITV-LFFIGVRCYEAYPNTSLP-----PSILEDSLENNEG---VPSPMLSISN 343
Query: 102 -SRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIG--SSL--------KVR-PVAL 149
++ ++ + LP ++L N L+V G SL K + P L
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 150 ----IPNS----------LPPSVP----------QILINRERLSHLNFDVELLGDGDV-I 184
IP S LP + P ++ ++++F+ + + + +
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ---IPV 459
Query: 185 IDTLCRALGESWTGT-LLELYNSLPPS-VPQIL--------INRERLSH-LNFDVELLGD 233
DT + G+ L L S+ V I+ + + +H L+F G
Sbjct: 460 YDT--------FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF-----GP 506
Query: 234 GDV 236
G
Sbjct: 507 GGA 509
Score = 31.2 bits (70), Expect = 0.41
Identities = 35/244 (14%), Positives = 68/244 (27%), Gaps = 73/244 (29%)
Query: 41 HGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSSPTSSDIS------------ 88
HGS A ++ + F + +P ++
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQ-EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 89 VPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSF------HS-AMTLDKNRCDLLI----V 137
V + V+ + F E + + H+ A L + L+ +
Sbjct: 72 VEPSKVGQFDQ-----VLNLCLTEF-E---NCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 138 IGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCRALG---- 193
I + + R +A P + S L +G+G+ + + G
Sbjct: 123 IKNYITARIMAKRPFDKKSN-----------SAL---FRAVGEGNAQLVAIF---GGQGN 165
Query: 194 -ESWTGTLLELYNSLPPSVPQILINR--ERLSHLNFDVE----LLGDG-DVIIDTLCRAL 245
+ + L +LY + V LI E LS L + G +++
Sbjct: 166 TDDYFEELRDLYQTYHVLV-GDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-------- 216
Query: 246 GESW 249
W
Sbjct: 217 --EW 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.030
Identities = 40/250 (16%), Positives = 71/250 (28%), Gaps = 75/250 (30%)
Query: 3 AFDAFIKMLERHGKLLRNYSQNIDTL-EQVAGIENVIECHGSFATASCTRCGHRVSAEAI 61
AF+ K+L L + Q D L ++ + +++
Sbjct: 261 AFNLSCKIL-----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---------VKSL 306
Query: 62 KADVFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSF 121
R P ++P +S+ E + D
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRR--LSI-----------------------IAESIRDGL 341
Query: 122 HSAMTLDKNRCD-LLIVIGSSLKVRPVALIPNSL----------PPSVPQILINRERLSH 170
+ CD L +I SSL V L P PPS I LS
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNV----LEPAEYRKMFDRLSVFPPSAH---IPTILLSL 394
Query: 171 L--NFDVELLGDGDVIIDTLC-RALGESW----TGTLLELYNSLPPSVP------QILIN 217
+ + D V+++ L +L E T ++ +Y L + + +++
Sbjct: 395 IWFDVIKS---DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 218 RERLSHLNFD 227
+ FD
Sbjct: 452 HYNI-PKTFD 460
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.13
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 201 LELYNSLPPSVPQILIN 217
L+LY S P + I
Sbjct: 29 LKLYA--DDSAPALAIK 43
Score = 29.9 bits (66), Expect = 0.44
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 8/25 (32%)
Query: 140 SSLKVRPVALIPNSLPPSVPQILIN 164
+SLK A S P + I
Sbjct: 27 ASLK--LYA------DDSAPALAIK 43
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 29.5 bits (67), Expect = 1.2
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 59 EAIKADVFQQRIPLCPSPACLSSPTSSDISV 89
+K ++F++ +S TSS + +
Sbjct: 112 LKVKNELFKRLDKFAAEHTIFASNTSS-LQI 141
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 29.2 bits (66), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 59 EAIKADVFQQRIPLCPSPACLSSPTSSDISV 89
+K +F Q +CP L++ TSS IS+
Sbjct: 96 LEVKKALFAQLAEVCPPQTLLTTNTSS-ISI 125
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 28.3 bits (63), Expect = 2.0
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 98 PPTPSRGVMKPDIVFFGEGLPDSFHSAMTLDKNRCDLLIVIGSSLKVRP 146
P P++ P V G + MT D + S +VR
Sbjct: 3 PVLPTQSAHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSS---SFEVRT 48
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 28.4 bits (62), Expect = 3.0
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 5/111 (4%)
Query: 133 DLLIVIGSSLKVRPVALIPNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCRAL 192
+++ + SSL V P P +L+ + + E+ + +++ C A+
Sbjct: 659 NMISTLFSSLNT-DVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAM 717
Query: 193 GESWTGTLLELYNSLPPSVPQILINRERLSHLNFDVELLGDGDVIIDTLCR 243
+ T L +S P + + + L I +
Sbjct: 718 KHAIT----NLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFK 764
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM;
1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB:
1vhb_A* 3vhb_A* 4vhb_A*
Length = 146
Score = 27.5 bits (61), Expect = 3.2
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 181 GDVIIDTLCRALGESWTGTLLE----LYNSLPPSVPQILINRER 220
G ++ + LG++ T +L+ Y + + I E
Sbjct: 99 GQELLGAIKEVLGDAATDDILDAWGKAYGVI----ADVFIQVEA 138
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 27.8 bits (62), Expect = 4.5
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 11/82 (13%)
Query: 165 RERLSHLNFDVELLGDGDVIIDTLCRALGESWTGTLLELYNSLPPSVP--------QILI 216
E L ++G G I ++ + + + VP
Sbjct: 602 AEELRRNLVQPIVVGTGTKIKNSSAEEGKNLAPNQQVLILSDKAEEVPDMYGWTKETAE- 660
Query: 217 NRERLSHLNFDVELLGDGDVII 238
LN ++E G G +
Sbjct: 661 --TLAKWLNIELEFQGSGSTVQ 680
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 26.7 bits (59), Expect = 7.7
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 4 FDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFA 45
+ FI + + LL ++ D + I N +
Sbjct: 154 LEEFINGMAKDQDLLEIVYKSFDFSNVLRVICNGKQPDMETD 195
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding
site, glycosylation, ultrahigh resolution, calcium; HET:
NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB:
1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A*
1mn2_A*
Length = 357
Score = 26.8 bits (59), Expect = 7.8
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 76 PACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFG 114
+C S + + P S + P + P + F G
Sbjct: 317 LSCPSERFPTLTTQPGASQSLIAHCPDGSMSCPGVQFNG 355
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 26.9 bits (60), Expect = 8.4
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 91 AGESSSLPPTPSRGVMK------PDIVFFGEGLPDS 120
S++ P+P R + ++ GLP+
Sbjct: 8 TAASAARNPSPIRTMTDILSRGPKSMISLAGGLPNP 43
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 26.8 bits (60), Expect = 9.2
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 124 AMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPS--VPQILINRERLS-HLNFDVELLGD 180
+ D ++ GS+ V + QI I+ L + DV +LGD
Sbjct: 266 TIL----EADTVLFAGSNFPFSEV---EGTFRNVDNFIQIDIDPAMLGKRHHADVAILGD 318
Query: 181 GDVIIDTLCRALGE----SWTGTLLELYNS 206
+ ID + + +W L+ +
Sbjct: 319 AALAIDEILNKVDAVEESAWWTANLKNIAN 348
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 25.4 bits (56), Expect = 9.6
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 85 SDISVPAGESSSLPPTPSRGVMKPDIVFF--GEGLPDSFHSAMTLDKNRCDLLI 136
+ V GES S S ++ G+ + S T + L++
Sbjct: 16 KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVV 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,283,931
Number of extensions: 261848
Number of successful extensions: 911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 871
Number of HSP's successfully gapped: 43
Length of query: 268
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 176
Effective length of database: 4,133,061
Effective search space: 727418736
Effective search space used: 727418736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)