RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12429
(268 letters)
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 114 bits (286), Expect = 3e-31
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 13/192 (6%)
Query: 1 MYAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEA 60
A L + G+ + +QNID L + AG +N++E HGS CT CG
Sbjct: 83 HRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENY- 141
Query: 61 IKADVFQQRIPLCP--SPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLP 118
+ P+CP S P + D S+P + G+++P +V+FGE L
Sbjct: 142 --------KSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLD 193
Query: 119 DSFHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRERLSHLN-FDVE 176
+ + + CDL +V+G+S V P A+ + VP N E N F
Sbjct: 194 PAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFH 253
Query: 177 LLGDGDVIIDTL 188
G +
Sbjct: 254 FQGPCGTTLPEA 265
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 108 bits (270), Expect = 2e-28
Identities = 68/227 (29%), Positives = 97/227 (42%), Gaps = 49/227 (21%)
Query: 3 AFDAFIKMLERHGKLLRNYSQNIDTLEQVAG--IENVIECHGSFATASCTRCGHRVSAEA 60
F+++L+ G LLR Y+QNIDTLE++AG E+++E HG+F T+ C R
Sbjct: 114 ICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPL 173
Query: 61 IKADVFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDS 120
C + ++KPDIVFFGE LP
Sbjct: 174 SWMKEKIFSEVTPKCEDC------------------------QSLVKPDIVFFGESLPAR 209
Query: 121 FHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRER------------- 167
F S M D + DLL+V+G+SL+V+P A + + P S P++LIN+E+
Sbjct: 210 FFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMG 269
Query: 168 --------LSHLNFDVELLGDGDVIIDTLCRALGESWTGTLLELYNS 206
DV LG+ D L LG W L +L
Sbjct: 270 LGGGMDFDSKKAYRDVAWLGECDQGCLALAELLG--WKKELEDLVRR 314
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 100 bits (250), Expect = 9e-26
Identities = 60/220 (27%), Positives = 88/220 (40%), Gaps = 45/220 (20%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAG--IENVIECHGSFATASCTRCGHRVSAEAIKAD 64
+K+ + L R Y+QNIDTLE+ AG + +IE HGSFA C CG + K+
Sbjct: 95 LLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSK 154
Query: 65 VFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSA 124
+ + I +KP IVFFGE LPDSF
Sbjct: 155 LAEHPIKDFVKCDVCGEL-----------------------VKPAIVFFGEDLPDSFSET 191
Query: 125 MTLD-------------KNRCDLLIVIGSSLKVRPVALIPNSLPPSVPQILINRE----- 166
D + L+IV+G+SL V P A +P +P V ++L N E
Sbjct: 192 WLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDF 251
Query: 167 RLSHLNFDVELLGDGDVIIDTLCRALGESWTGTLLELYNS 206
+ + D+ + D + L LG W ++ +
Sbjct: 252 KANKRPTDLIVHQYSDEFAEQLVEELG--WQEDFEKILTA 289
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 92.2 bits (228), Expect = 5e-23
Identities = 42/194 (21%), Positives = 61/194 (31%), Gaps = 33/194 (17%)
Query: 1 MYAFDAFIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEA 60
A A K+ + G +QNID L + AG NVI HG C++ G +
Sbjct: 68 NAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVL---- 123
Query: 61 IKADVFQQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDS 120
D P C ++P +V+FGE
Sbjct: 124 ---DWTGDVTPEDKCHCC----------------------QFPAPLRPHVVWFGEMPLGM 158
Query: 121 FHSAMTLDKNRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRERLSHLN-FDVELL 178
M L D+ I IG+S V P A + + +N E N F +
Sbjct: 159 DEIYMALSM--ADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYY 216
Query: 179 GDGDVIIDTLCRAL 192
G ++ L
Sbjct: 217 GPASQVVPEFVEKL 230
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 91.4 bits (226), Expect = 9e-23
Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 30/190 (15%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVF 66
+ LE G + +QNID L Q AG + VIE HG+ C RC + + E + +
Sbjct: 82 LLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLE 141
Query: 67 QQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMT 126
+PLC +++P+IVFFGE LP
Sbjct: 142 SSDVPLCD--------------------------DCNSLIRPNIVFFGENLPQDALREAI 175
Query: 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRE--RLSHLNFDVELLGDGDV 183
+R L+IV+GSSL V P A +P S +++N + ++ D
Sbjct: 176 GLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDI-ATLKYNMDVVE 234
Query: 184 IIDTLCRALG 193
+ G
Sbjct: 235 FARRVMEEGG 244
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 84.5 bits (208), Expect = 4e-20
Identities = 48/188 (25%), Positives = 72/188 (38%), Gaps = 31/188 (16%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVF 66
LER G L +QN+D L + AG NVI HGS CT C + +++
Sbjct: 82 AFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFE---VESAPK 138
Query: 67 QQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMT 126
+P C C +++P +V+ GE LP
Sbjct: 139 IPPLPKCDK--C------------------------GSLLRPGVVWAGEMLPPDVLDRAM 172
Query: 127 LDKNRCDLLIVIGSSLKVRPVALIPNSLPPS-VPQILINRERLSHLN-FDVELLGDGDVI 184
+ R D++IV G+S V+P A +P + I IN + D L G +
Sbjct: 173 REVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEV 232
Query: 185 IDTLCRAL 192
+D L R +
Sbjct: 233 MDELVRHV 240
Score = 26.7 bits (58), Expect = 2.5
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 212 PQILINRERLSHLN-FDVELLGDGDVIIDTLCRALGESWTVRL 253
I IN + D L G ++D L R + ++ +++L
Sbjct: 206 AIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKALSLKL 248
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 83.4 bits (205), Expect = 1e-19
Identities = 50/191 (26%), Positives = 71/191 (37%), Gaps = 29/191 (15%)
Query: 7 FIKMLERHGKLLRNYSQNIDTLEQVAGIENVIECHGSFATASCTRCGHRVSAEAIKADVF 66
I LER G + +QNID L Q AG V+E HGS C C D
Sbjct: 84 AIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFN 143
Query: 67 QQRIPLCPSPACLSSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFFGEGLPDSFHSAMT 126
+ IP C +KP +V FGE LP
Sbjct: 144 KGEIPRCRKCGS-------------------------YYVKPRVVLFGEPLPQRTLFEAI 178
Query: 127 LDKNRCDLLIVIGSSLKVRPVALIPN-SLPPSVPQILINRE--RLSHLNFDVELLGDGDV 183
+ CD +V+GSSL V P A +P + I++N E + FDV+++G
Sbjct: 179 EEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPI-FDVKIIGKAGE 237
Query: 184 IIDTLCRALGE 194
++ + +
Sbjct: 238 VLPKIVEEVKR 248
>d1vhba_ a.1.1.2 (A:) Bacterial dimeric hemoglobin {Vitreoscilla
stercoraria [TaxId: 61]}
Length = 144
Score = 27.6 bits (61), Expect = 0.88
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 181 GDVIIDTLCRALGESWTGTLLELYNSLPPSVPQILINRER 220
G ++ + LG++ T +L+ + + + I E
Sbjct: 98 GQELLGAIKEVLGDAATDDILDAWGKAYGVIADVFIQVEA 137
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase
complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 158
Score = 27.6 bits (61), Expect = 1.1
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 129 KNRCDLLIVIGSSLKVRPVAL-IPNSLPPSVPQILINRERLSHLNFDV-ELLGDGDVIID 186
+ DL++++GS L + P + + I+R + + L + +
Sbjct: 90 QGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFGNLWKKEEDYLK 149
Query: 187 TLCRALGE 194
L L E
Sbjct: 150 LLDEILAE 157
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus
(Peniophora sp. SG) [TaxId: 204723]}
Length = 198
Score = 27.2 bits (60), Expect = 1.6
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 109 DIVFFGEGLPDSFHSAMTLDKNRCD 133
D FFG P + + D
Sbjct: 116 DWRFFGRTEPK-EENKLWFSDKITD 139
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 24.9 bits (54), Expect = 4.2
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 40 CHGSFATASCTRCGHRVSAEAIKADVFQQRIPLCPSPACLSSPTSSDISVPA 91
C A T C H I + CPS C +D+ P
Sbjct: 29 CEHILADPVETSCKHLFCRICIL-RCLKVMGSYCPS--CRYPCFPTDLESPV 77
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 150
Score = 25.8 bits (56), Expect = 4.3
Identities = 6/40 (15%), Positives = 18/40 (45%)
Query: 181 GDVIIDTLCRALGESWTGTLLELYNSLPPSVPQILINRER 220
G+ ++ + LG + T ++ + ++ +L+ E
Sbjct: 99 GEHLLAAIKEVLGNAATDDIISAWAQAYGNLADVLMGMES 138
>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga
maritima [TaxId: 2336]}
Length = 420
Score = 26.3 bits (56), Expect = 4.9
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 94 SSSLPPTPSRGVMK----PDIVFFGEGLPD 119
++ + R ++K D + FG G+PD
Sbjct: 20 GQNMKSSIIREILKFAADKDAISFGGGVPD 49
>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase,
MSAT {Thermococcus profundus [TaxId: 49899]}
Length = 403
Score = 26.2 bits (56), Expect = 5.1
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 91 AGESSSLPPTPSRGVMK----PDIVFFGEGLPD 119
+ ++ + + R ++K D++ GLP
Sbjct: 8 SEKAMLMKASEVRELLKLVETSDVISLAGGLPA 40
>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 105
Score = 25.0 bits (53), Expect = 6.0
Identities = 3/34 (8%), Positives = 8/34 (23%)
Query: 80 SSPTSSDISVPAGESSSLPPTPSRGVMKPDIVFF 113
S+ + + G +P +
Sbjct: 7 SAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL 40
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 424
Score = 25.7 bits (56), Expect = 6.9
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 146 PVALIPNSLPPSVPQILINRERLSHLNFDV-ELLGDG 181
PV L P P V Q + E++ L E+ +G
Sbjct: 5 PVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEG 41
>d1lj8a4 c.2.1.6 (A:1-286) Mannitol 2-dehydrogenase {Pseudomonas
fluorescens [TaxId: 294]}
Length = 286
Score = 25.4 bits (55), Expect = 8.2
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 3/26 (11%)
Query: 99 PTPSRGVMKPDIVFFGEGLPDSFHSA 124
P + + I G G FH A
Sbjct: 18 PAYTLADTRQGIAHIGVG---GFHRA 40
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 216
Score = 24.9 bits (54), Expect = 8.5
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 146 PVALIPNSLPPSVPQILINRERLSHLN 172
PV L P P V Q + +++ L
Sbjct: 9 PVKLKPGMDGPKVAQWPLTAAKIAALV 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,046,223
Number of extensions: 49930
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 25
Length of query: 268
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,254,276
Effective search space: 230786784
Effective search space used: 230786784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)