Query psy12430
Match_columns 146
No_of_seqs 234 out of 1275
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 19:06:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0527|consensus 99.9 3.5E-27 7.7E-32 192.7 8.0 77 1-77 67-143 (331)
2 cd01389 MATA_HMG-box MATA_HMG- 99.9 3.8E-25 8.3E-30 146.1 9.2 71 1-71 6-76 (77)
3 KOG0528|consensus 99.9 4.5E-24 9.8E-29 178.7 7.6 107 1-107 330-436 (511)
4 cd01388 SOX-TCF_HMG-box SOX-TC 99.9 4.3E-23 9.4E-28 134.7 9.0 67 1-67 6-72 (72)
5 PTZ00199 high mobility group p 99.8 4.2E-19 9.2E-24 121.7 6.7 65 1-65 27-93 (94)
6 smart00398 HMG high mobility g 99.8 2.1E-18 4.5E-23 110.4 8.0 65 1-65 6-70 (70)
7 PF00505 HMG_box: HMG (high mo 99.8 4.3E-19 9.3E-24 113.9 4.6 65 1-65 5-69 (69)
8 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 6.1E-18 1.3E-22 107.6 8.2 61 1-61 5-65 (66)
9 cd00084 HMG-box High Mobility 99.7 3.5E-17 7.6E-22 103.6 8.2 62 1-62 5-66 (66)
10 KOG3248|consensus 99.7 2.8E-16 6.1E-21 127.4 9.9 66 1-66 196-261 (421)
11 PF09011 HMG_box_2: HMG-box do 99.6 3.6E-16 7.9E-21 102.1 5.7 64 1-64 8-72 (73)
12 KOG0381|consensus 99.6 4.6E-15 1E-19 101.2 6.8 65 1-65 27-92 (96)
13 COG5648 NHP6B Chromatin-associ 99.6 8.4E-15 1.8E-19 112.2 6.8 65 1-65 75-139 (211)
14 KOG0526|consensus 99.3 4.5E-12 9.8E-17 108.2 6.3 61 1-65 540-600 (615)
15 KOG4715|consensus 99.2 3.2E-11 7E-16 97.5 4.6 68 1-68 69-136 (410)
16 KOG2746|consensus 99.0 6.1E-10 1.3E-14 97.3 4.6 66 1-68 186-253 (683)
17 PF14887 HMG_box_5: HMG (high 97.8 0.00011 2.5E-09 48.3 6.1 62 4-66 11-72 (85)
18 PF06382 DUF1074: Protein of u 97.7 6.9E-05 1.5E-09 56.6 5.2 48 2-53 84-131 (183)
19 COG5648 NHP6B Chromatin-associ 96.9 0.0008 1.7E-08 52.1 3.0 61 3-63 150-210 (211)
20 PF08073 CHDNT: CHDNT (NUC034) 96.8 0.0024 5.1E-08 39.5 4.2 38 2-39 14-51 (55)
21 PTZ00199 high mobility group p 95.3 0.027 5.8E-07 38.3 3.9 30 70-99 14-43 (94)
22 PF04769 MAT_Alpha1: Mating-ty 92.7 0.23 5E-06 38.5 4.7 67 1-90 48-115 (201)
23 PRK15117 ABC transporter perip 92.4 0.41 8.8E-06 37.2 5.8 48 19-66 65-114 (211)
24 TIGR03481 HpnM hopanoid biosyn 92.3 0.21 4.5E-06 38.4 3.9 45 21-65 63-109 (198)
25 PF06244 DUF1014: Protein of u 88.7 0.96 2.1E-05 32.4 4.5 38 3-40 79-116 (122)
26 PF09011 HMG_box_2: HMG-box do 84.1 1.3 2.8E-05 28.1 2.9 24 77-100 2-25 (73)
27 cd01390 HMGB-UBF_HMG-box HMGB- 81.9 1.7 3.6E-05 26.5 2.7 22 79-100 1-22 (66)
28 PF12881 NUT_N: NUT protein N 79.4 4.9 0.00011 33.2 5.3 54 2-55 230-283 (328)
29 PF00505 HMG_box: HMG (high mo 77.2 3 6.4E-05 25.6 2.8 22 79-100 1-22 (69)
30 cd01388 SOX-TCF_HMG-box SOX-TC 76.2 3 6.4E-05 26.4 2.6 21 80-100 3-23 (72)
31 PF05494 Tol_Tol_Ttg2: Toluene 75.8 1.8 3.9E-05 32.0 1.7 47 19-65 35-83 (170)
32 cd01389 MATA_HMG-box MATA_HMG- 75.2 3.3 7.2E-05 26.5 2.7 22 79-100 2-23 (77)
33 smart00398 HMG high mobility g 73.1 4.5 9.7E-05 24.6 2.8 22 79-100 2-23 (70)
34 PF01352 KRAB: KRAB box; Inte 71.0 3.8 8.2E-05 23.6 1.9 29 23-51 2-31 (41)
35 PF09164 VitD-bind_III: Vitami 70.7 14 0.0003 23.7 4.5 33 2-34 9-41 (68)
36 cd00084 HMG-box High Mobility 70.3 5.4 0.00012 23.9 2.7 21 79-99 1-21 (66)
37 KOG0526|consensus 65.8 6.6 0.00014 34.8 3.1 31 70-100 527-557 (615)
38 COG2854 Ttg2D ABC-type transpo 64.0 9.7 0.00021 29.6 3.5 42 28-69 77-119 (202)
39 KOG3223|consensus 62.1 12 0.00027 28.9 3.7 45 3-50 171-215 (221)
40 KOG0381|consensus 61.8 10 0.00022 25.0 3.0 23 77-99 21-43 (96)
41 PRK10236 hypothetical protein; 61.2 9.1 0.0002 30.4 2.9 23 27-49 118-140 (237)
42 PF06945 DUF1289: Protein of u 59.3 14 0.00031 22.0 3.0 26 22-52 22-47 (51)
43 PRK12751 cpxP periplasmic stre 58.7 25 0.00054 26.3 4.8 34 26-59 118-151 (162)
44 PF05388 Carbpep_Y_N: Carboxyp 58.0 27 0.00059 24.5 4.7 33 24-56 45-77 (113)
45 KOG3838|consensus 55.7 39 0.00084 29.2 5.9 27 39-65 270-296 (497)
46 PRK14283 chaperone protein Dna 51.5 34 0.00073 28.7 5.0 42 8-49 23-68 (378)
47 PF00226 DnaJ: DnaJ domain; I 50.7 25 0.00055 21.1 3.2 37 8-44 18-60 (64)
48 KOG1610|consensus 50.1 43 0.00094 27.9 5.3 54 7-60 188-254 (322)
49 smart00271 DnaJ DnaJ molecular 50.0 29 0.00063 20.4 3.4 35 8-42 19-59 (60)
50 PRK10266 curved DNA-binding pr 49.7 39 0.00085 27.5 5.0 42 8-49 22-67 (306)
51 PRK14299 chaperone protein Dna 49.3 39 0.00085 27.3 4.9 42 8-49 22-67 (291)
52 PRK10363 cpxP periplasmic repr 49.3 43 0.00094 25.2 4.7 36 24-59 110-145 (166)
53 PRK14279 chaperone protein Dna 49.2 31 0.00067 29.2 4.4 42 8-49 27-73 (392)
54 PF13875 DUF4202: Domain of un 49.0 46 0.00099 25.5 4.9 39 3-44 131-169 (185)
55 PRK14296 chaperone protein Dna 48.6 39 0.00084 28.4 4.9 42 8-49 22-67 (372)
56 PRK14291 chaperone protein Dna 48.5 37 0.00081 28.5 4.8 42 8-49 21-66 (382)
57 PRK12750 cpxP periplasmic repr 48.4 41 0.00089 25.2 4.6 34 28-61 127-160 (170)
58 PRK14281 chaperone protein Dna 47.8 36 0.00078 28.8 4.6 42 8-49 21-67 (397)
59 PRK14295 chaperone protein Dna 47.0 48 0.0011 28.0 5.3 44 8-51 27-75 (389)
60 cd08317 Death_ank Death domain 46.4 11 0.00025 24.6 1.1 23 20-42 3-25 (84)
61 PTZ00037 DnaJ_C chaperone prot 46.2 42 0.00091 28.8 4.8 43 8-50 46-89 (421)
62 PF12650 DUF3784: Domain of un 45.2 13 0.00029 24.8 1.4 16 34-49 25-40 (97)
63 PRK14284 chaperone protein Dna 44.5 46 0.00099 28.1 4.8 42 8-49 19-65 (391)
64 PF11304 DUF3106: Protein of u 44.5 38 0.00083 23.4 3.6 26 26-51 11-36 (107)
65 PRK14285 chaperone protein Dna 43.9 43 0.00094 28.0 4.5 42 8-49 21-67 (365)
66 PF11304 DUF3106: Protein of u 43.8 97 0.0021 21.3 5.6 32 14-45 33-66 (107)
67 PRK09706 transcriptional repre 43.3 37 0.0008 23.9 3.5 40 26-65 87-126 (135)
68 PRK14280 chaperone protein Dna 42.8 55 0.0012 27.5 5.0 42 8-49 22-67 (376)
69 PRK14287 chaperone protein Dna 40.7 63 0.0014 27.1 5.0 42 8-49 22-67 (371)
70 PF08367 M16C_assoc: Peptidase 39.4 58 0.0013 25.4 4.4 32 25-56 13-44 (248)
71 PRK14155 heat shock protein Gr 38.0 29 0.00063 27.0 2.4 17 129-145 190-206 (208)
72 PF06628 Catalase-rel: Catalas 37.5 36 0.00078 21.4 2.4 19 30-48 12-30 (68)
73 PRK09897 hypothetical protein; 36.9 1.1E+02 0.0024 27.1 6.1 37 26-62 355-391 (534)
74 PRK14294 chaperone protein Dna 36.8 69 0.0015 26.8 4.6 42 8-49 22-68 (366)
75 PF15581 Imm35: Immunity prote 36.8 32 0.0007 23.3 2.1 22 22-43 30-51 (93)
76 PRK14286 chaperone protein Dna 36.2 79 0.0017 26.5 4.9 42 8-49 22-68 (372)
77 PRK14288 chaperone protein Dna 36.1 81 0.0017 26.4 5.0 42 8-49 21-67 (369)
78 PRK14276 chaperone protein Dna 35.9 77 0.0017 26.6 4.8 42 8-49 22-67 (380)
79 cd07081 ALDH_F20_ACDH_EutE-lik 35.2 67 0.0014 27.6 4.4 39 26-64 6-44 (439)
80 KOG0713|consensus 35.2 93 0.002 26.1 5.0 45 8-52 34-83 (336)
81 PF13412 HTH_24: Winged helix- 35.1 39 0.00084 19.2 2.1 25 16-40 12-36 (48)
82 PRK14298 chaperone protein Dna 34.1 74 0.0016 26.8 4.4 41 9-49 24-68 (377)
83 PRK14290 chaperone protein Dna 34.0 59 0.0013 27.1 3.8 42 8-49 21-68 (365)
84 cd06257 DnaJ DnaJ domain or J- 33.8 86 0.0019 17.8 3.6 32 8-39 18-54 (55)
85 PRK14297 chaperone protein Dna 32.0 81 0.0018 26.5 4.4 42 8-49 22-68 (380)
86 PRK14278 chaperone protein Dna 31.9 92 0.002 26.2 4.7 42 8-49 21-66 (378)
87 PRK14277 chaperone protein Dna 31.0 1E+02 0.0022 26.0 4.8 42 8-49 23-69 (386)
88 KOG2880|consensus 30.3 1.1E+02 0.0024 26.1 4.8 62 2-65 53-116 (424)
89 KOG1827|consensus 30.0 3.3 7.1E-05 37.3 -4.5 42 2-43 554-595 (629)
90 PRK10455 periplasmic protein; 29.9 1.1E+02 0.0024 22.7 4.3 27 26-52 118-144 (161)
91 PRK14292 chaperone protein Dna 29.8 1E+02 0.0022 25.7 4.6 42 8-49 20-65 (371)
92 KOG0528|consensus 28.7 31 0.00067 30.3 1.3 58 11-69 28-85 (511)
93 PF02026 RyR: RyR domain; Int 28.5 55 0.0012 22.1 2.3 22 34-55 60-81 (94)
94 PF13945 NST1: Salt tolerance 27.8 1.4E+02 0.003 23.0 4.6 26 24-49 100-125 (190)
95 TIGR02349 DnaJ_bact chaperone 27.5 1.2E+02 0.0026 25.1 4.6 42 8-49 18-63 (354)
96 PHA03335 hypothetical protein; 27.3 31 0.00067 28.7 1.0 41 1-41 258-303 (385)
97 PRK10767 chaperone protein Dna 27.1 1.4E+02 0.003 24.9 4.9 42 8-49 22-68 (371)
98 PRK14282 chaperone protein Dna 26.4 1.2E+02 0.0026 25.3 4.4 42 8-49 22-69 (369)
99 PHA03102 Small T antigen; Revi 25.7 1.3E+02 0.0028 22.2 4.0 36 8-43 25-61 (153)
100 PF11521 TFIIE-A_C-term: C-ter 25.7 1.2E+02 0.0026 20.2 3.5 21 33-53 60-80 (86)
101 KOG0715|consensus 25.6 1.4E+02 0.0031 24.2 4.6 45 9-53 62-110 (288)
102 PRK14301 chaperone protein Dna 25.2 1.3E+02 0.0028 25.2 4.4 42 8-49 22-68 (373)
103 PF07757 AdoMet_MTase: Predict 24.7 1E+02 0.0022 21.8 3.1 36 28-63 19-56 (112)
104 PF13542 HTH_Tnp_ISL3: Helix-t 24.7 63 0.0014 18.5 1.8 32 7-38 12-44 (52)
105 COG0484 DnaJ DnaJ-class molecu 23.6 1.5E+02 0.0032 25.3 4.4 40 9-48 23-67 (371)
106 PF12284 HoxA13_N: Hox protein 23.4 1.4E+02 0.0029 21.3 3.5 41 100-140 24-64 (117)
107 cd07132 ALDH_F3AB Aldehyde deh 23.0 1.2E+02 0.0027 25.8 4.0 39 26-64 5-43 (443)
108 PLN02150 terpene synthase/cycl 22.0 51 0.0011 22.3 1.2 19 23-41 24-42 (96)
109 PRK14293 chaperone protein Dna 22.0 1.8E+02 0.0038 24.4 4.6 41 8-48 21-65 (374)
110 cd07122 ALDH_F20_ACDH Coenzyme 21.9 1.6E+02 0.0035 25.3 4.4 38 27-64 7-44 (436)
111 PF07813 LTXXQ: LTXXQ motif fa 21.8 1.2E+02 0.0027 19.4 3.0 24 26-49 76-99 (100)
112 PRK14300 chaperone protein Dna 21.6 2.1E+02 0.0045 24.0 5.0 42 8-49 21-66 (372)
113 TIGR00787 dctP tripartite ATP- 20.7 1.3E+02 0.0027 23.4 3.3 25 32-56 213-237 (257)
114 cd07085 ALDH_F6_MMSDH Methylma 20.6 1.7E+02 0.0038 25.0 4.4 36 28-63 47-82 (478)
115 cd07084 ALDH_KGSADH-like ALDH 20.3 1.7E+02 0.0036 25.0 4.2 38 26-63 6-43 (442)
116 cd00922 Cyt_c_Oxidase_IV Cytoc 20.3 60 0.0013 23.5 1.3 27 30-56 28-54 (136)
117 PRK13252 betaine aldehyde dehy 20.3 1.7E+02 0.0037 25.2 4.3 36 28-63 53-88 (488)
118 PF03480 SBP_bac_7: Bacterial 20.1 1.5E+02 0.0031 23.4 3.6 27 32-58 213-239 (286)
No 1
>KOG0527|consensus
Probab=99.94 E-value=3.5e-27 Score=192.67 Aligned_cols=77 Identities=53% Similarity=0.936 Sum_probs=73.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCCcccCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKRTCIVD 77 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr~~~~~ 77 (146)
|||||+|++..|.+|.++||+++|.||||+||.+||.|+++||.+|+++|+++|.+|+++||+|||+||||+++...
T Consensus 67 MNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYRPRRKkk~~~~ 143 (331)
T KOG0527|consen 67 MNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYRPRRKKKKRPK 143 (331)
T ss_pred cchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCcccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998754433
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.92 E-value=3.8e-25 Score=146.15 Aligned_cols=71 Identities=31% Similarity=0.603 Sum_probs=69.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPK 71 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~k 71 (146)
+||||||++++|..|+.+||++++.||+++||++|+.|+++||++|+++|++++++|++++|+|+|+|+++
T Consensus 6 ~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p~~~ 76 (77)
T cd01389 6 RNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTPRKS 76 (77)
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG0528|consensus
Probab=99.90 E-value=4.5e-24 Score=178.73 Aligned_cols=107 Identities=80% Similarity=1.306 Sum_probs=104.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCCcccCCCCc
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKRTCIVDGKK 80 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr~~~~~~~k 80 (146)
|||||+|.++.|.+|...+|++++..|+||||..||.|+..||++|+++-.++-..|.+.||+|+|+||.||+|..++||
T Consensus 330 MNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPRPKRTCvvdGKk 409 (511)
T KOG0528|consen 330 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPRPKRTCVVDGKK 409 (511)
T ss_pred cchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCCCCceeeecCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhHHHHHHHHHHHHHHhhcCCCC
Q psy12430 81 MRISEYKTLMRQRRNEMRQLWCRGEAG 107 (146)
Q Consensus 81 ~~~s~~~~~~~~~r~~~~~~~~~~~~~ 107 (146)
.+...|...+..+|++|++.|+++...
T Consensus 410 lRigEYK~lMr~rrqemrq~~~i~~q~ 436 (511)
T KOG0528|consen 410 LRIGEYKALMRNRRQEMRQFFDIGSQA 436 (511)
T ss_pred eehHHHHHHHHhHHHHhhcccccCCcc
Confidence 999999999999999999999998754
No 4
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.89 E-value=4.3e-23 Score=134.73 Aligned_cols=67 Identities=60% Similarity=1.023 Sum_probs=65.9
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYR 67 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~ 67 (146)
|||||+|++++|.+++.+||++++.||+++||++|+.|+++||++|.++|+.++++|.+++|+|+|+
T Consensus 6 ~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~y~ 72 (72)
T cd01388 6 MNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKWR 72 (72)
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999995
No 5
>PTZ00199 high mobility group protein; Provisional
Probab=99.78 E-value=4.2e-19 Score=121.71 Aligned_cols=65 Identities=25% Similarity=0.566 Sum_probs=62.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMH--NSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~--~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|||||||++++|..|+.+||++. +++|+++||++|+.|+++||++|+++|+.++++|.+++..|+
T Consensus 27 ~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~Y~ 93 (94)
T PTZ00199 27 LSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAEYA 93 (94)
T ss_pred CcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999986 899999999999999999999999999999999999998884
No 6
>smart00398 HMG high mobility group.
Probab=99.77 E-value=2.1e-18 Score=110.42 Aligned_cols=65 Identities=42% Similarity=0.743 Sum_probs=63.4
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
+|+||+|++++|..++.++|++++.+|+++||++|+.|++++|++|.++|+.++++|.++++.|+
T Consensus 6 ~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 6 MSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999999999999999999999999999999999985
No 7
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.77 E-value=4.3e-19 Score=113.94 Aligned_cols=65 Identities=40% Similarity=0.696 Sum_probs=61.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
+||||||+++.+..|+.+||++++.+|+++||++|++|+++||++|.++|.+++++|.+++++|+
T Consensus 5 ~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 5 PNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp --HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 59999999999999999999999999999999999999999999999999999999999998873
No 8
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.75 E-value=6.1e-18 Score=107.55 Aligned_cols=61 Identities=28% Similarity=0.583 Sum_probs=59.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKH 61 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~ 61 (146)
+||||+|++++|..++.+||++++.+|+++||++|++|+++||++|.++|++++++|.+++
T Consensus 5 ~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 5 LSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999999999999999999999999999999999999999999876
No 9
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.72 E-value=3.5e-17 Score=103.56 Aligned_cols=62 Identities=27% Similarity=0.560 Sum_probs=60.2
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHP 62 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p 62 (146)
+||||+|+++.|..++.++|+++..+|+++||++|+.|++++|.+|.++|+.++++|.++++
T Consensus 5 ~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~~ 66 (66)
T cd00084 5 LSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEMP 66 (66)
T ss_pred CcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 69999999999999999999999999999999999999999999999999999999998875
No 10
>KOG3248|consensus
Probab=99.67 E-value=2.8e-16 Score=127.36 Aligned_cols=66 Identities=36% Similarity=0.706 Sum_probs=63.4
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 66 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~ 66 (146)
|||||||.+++|.+|..+|-.....+|.+|||++|.+|+.||..+|+++|.++++.|++.||+|--
T Consensus 196 LNAFmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSA 261 (421)
T KOG3248|consen 196 LNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA 261 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 799999999999999999988889999999999999999999999999999999999999999943
No 11
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.64 E-value=3.6e-16 Score=102.14 Aligned_cols=64 Identities=20% Similarity=0.393 Sum_probs=58.0
Q ss_pred CchhHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy12430 1 MNAFMVWAKDERRKILKA-CPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 64 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~-~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Y 64 (146)
+|||+||+.+++..++.+ .+.....||.+.|++.|++||++||.+|+++|+.++++|.+++..|
T Consensus 8 ~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~ 72 (73)
T PF09011_consen 8 PSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEW 72 (73)
T ss_dssp SSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999998 7788999999999999999999999999999999999999988765
No 12
>KOG0381|consensus
Probab=99.58 E-value=4.6e-15 Score=101.18 Aligned_cols=65 Identities=31% Similarity=0.639 Sum_probs=62.4
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCC-CCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHP-DYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p-~Yk 65 (146)
++||++|+.+.|..++.+||++.+.||+++||++|++|++++|++|+..|..++++|.+++. .|+
T Consensus 27 ~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~ 92 (96)
T KOG0381|consen 27 LSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYK 92 (96)
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999998 664
No 13
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.55 E-value=8.4e-15 Score=112.19 Aligned_cols=65 Identities=25% Similarity=0.627 Sum_probs=63.4
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|+|||+|+..+|++|+.++|.+.+.+|+++||++|++|+++||++|+.+|..++++|+.+...|.
T Consensus 75 ~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~y~ 139 (211)
T COG5648 75 LSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYN 139 (211)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999985
No 14
>KOG0526|consensus
Probab=99.29 E-value=4.5e-12 Score=108.16 Aligned_cols=61 Identities=21% Similarity=0.494 Sum_probs=59.4
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|+|||||.+..|+.|+.+ ++.++||+|.+|++|+.|+. |.+|++.|+.+|++|+.+|.+|+
T Consensus 540 ~sa~m~w~~~~r~~ik~d--gi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk 600 (615)
T KOG0526|consen 540 TSAYMLWLNASRESIKED--GISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYK 600 (615)
T ss_pred hhHHHHHHHhhhhhHhhc--CchHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhc
Confidence 689999999999999998 89999999999999999999 89999999999999999999998
No 15
>KOG4715|consensus
Probab=99.15 E-value=3.2e-11 Score=97.50 Aligned_cols=68 Identities=22% Similarity=0.407 Sum_probs=65.0
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRP 68 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p 68 (146)
|-.||.|++.+|++|+..||++...||.|+||.+|+.|+++||+.|.+.++.+|.+|.+.|..|...|
T Consensus 69 l~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~sp 136 (410)
T KOG4715|consen 69 LMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNSP 136 (410)
T ss_pred cchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 45799999999999999999999999999999999999999999999999999999999999998665
No 16
>KOG2746|consensus
Probab=98.96 E-value=6.1e-10 Score=97.27 Aligned_cols=66 Identities=30% Similarity=0.584 Sum_probs=61.4
Q ss_pred CchhHHHHHHHH--HHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCC
Q psy12430 1 MNAFMVWAKDER--RKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRP 68 (146)
Q Consensus 1 mnay~lF~~~~r--~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p 68 (146)
||||++|++.+| ..+++.||+..+..|++|||++|-.|-+.||+.|.++|.+.|+.|.++ +|++.+
T Consensus 186 Mnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka--e~~k~s 253 (683)
T KOG2746|consen 186 MNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA--EWKKDS 253 (683)
T ss_pred hHHHHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh--hccccc
Confidence 899999999999 999999999999999999999999999999999999999999999987 554433
No 17
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=97.76 E-value=0.00011 Score=48.31 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC
Q psy12430 4 FMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 66 (146)
Q Consensus 4 y~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~ 66 (146)
=-||.+.........+++-...+ -+.+...|++|++.+|.+|...|.++..+|+.++-+|+-
T Consensus 11 qe~Wqq~vi~dYla~~~~dr~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~ 72 (85)
T PF14887_consen 11 QEIWQQSVIGDYLAKFRNDRKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRS 72 (85)
T ss_dssp HHHHHHHHHHHHHHHTTSTHHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHHHHHhhHhHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677888888888888776666 458999999999999999999999999999999999964
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.72 E-value=6.9e-05 Score=56.55 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHH
Q psy12430 2 NAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRL 53 (146)
Q Consensus 2 nay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~ 53 (146)
|+||-|..++|.+ |.+|...|+....+..|..|+++||..|..++...
T Consensus 84 naYLNFLReFRrk----h~~L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~ 131 (183)
T PF06382_consen 84 NAYLNFLREFRRK----HCGLSPQDLIQRAARAWCRLSEAEKNRYRRMAPSV 131 (183)
T ss_pred hHHHHHHHHHHHH----ccCCCHHHHHHHHHHHHHhCCHHHHHHHHhhcchh
Confidence 7999999999874 68899999999999999999999999999876544
No 19
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=96.91 E-value=0.0008 Score=52.10 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCC
Q psy12430 3 AFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPD 63 (146)
Q Consensus 3 ay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~ 63 (146)
.|+-+..+.|.++...+|.....++.++++..|++|++..|.+|.+.++.++++|...+|+
T Consensus 150 ~~~e~~~~~r~~~~~~~~~~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~~ 210 (211)
T COG5648 150 PFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYPE 210 (211)
T ss_pred hhhhccHHhccccCCCCcchhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhccc
Confidence 4555667778888888888889999999999999999999999999999999999988874
No 20
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.84 E-value=0.0024 Score=39.48 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=34.9
Q ss_pred chhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q psy12430 2 NAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMS 39 (146)
Q Consensus 2 nay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls 39 (146)
+.|=+|.+..|+.|...||++..+.|-.+++.+||+-+
T Consensus 14 t~yK~Fsq~vRP~l~~~NPk~~~sKl~~l~~AKwrEF~ 51 (55)
T PF08073_consen 14 TNYKAFSQHVRPLLAKANPKAPMSKLMMLLQAKWREFQ 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999754
No 21
>PTZ00199 high mobility group protein; Provisional
Probab=95.35 E-value=0.027 Score=38.25 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.5
Q ss_pred CCCcccCCCCccCcchhHHHHHHHHHHHHH
Q psy12430 70 PKRTCIVDGKKMRISEYKTLMRQRRNEMRQ 99 (146)
Q Consensus 70 ~kr~~~~~~~k~~~s~~~~~~~~~r~~~~~ 99 (146)
+++.++++.+|+|.|+|++|+.+.|..|..
T Consensus 14 ~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~ 43 (94)
T PTZ00199 14 KRKKKDPNAPKRALSAYMFFAKEKRAEIIA 43 (94)
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 345678889999999999999999998865
No 22
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=92.70 E-value=0.23 Score=38.49 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=47.3
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCCcccC-CCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKRTCIV-DGK 79 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr~~~~-~~~ 79 (146)
+|+||+|+.-+- ...|++...++|.+|+..|..=+- |..|.-+|+..-. .++. ...
T Consensus 48 lN~Fm~FRsyy~----~~~~~~~Qk~~S~~l~~lW~~dp~--k~~W~l~ak~ys~-----------------iRd~~gk~ 104 (201)
T PF04769_consen 48 LNGFMAFRSYYS----PIFPPLPQKELSGILTKLWEKDPF--KNKWSLMAKAYSF-----------------IRDQLGKD 104 (201)
T ss_pred hhHHHHHHHHHH----hhcCCcCHHHHHHHHHHHHhCCcc--HhHHHHHhhhhhh-----------------hccccccc
Confidence 699999988776 346789999999999999997433 4566666544311 1222 225
Q ss_pred ccCcchhHHHH
Q psy12430 80 KMRISEYKTLM 90 (146)
Q Consensus 80 k~~~s~~~~~~ 90 (146)
+.+...|+.|+
T Consensus 105 ~~~L~~Fl~~~ 115 (201)
T PF04769_consen 105 KAPLDQFLAFA 115 (201)
T ss_pred cCCHHHHHHHh
Confidence 67888998888
No 23
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=92.41 E-value=0.41 Score=37.17 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=39.4
Q ss_pred CCCCChhHHHH-HHHHHHhcCChhhhhhhHHHHHHHH-HHHHHhCCCCCC
Q psy12430 19 CPDMHNSNISK-ILGARWKAMSNAEKQPYYEEQSRLS-KLHMEKHPDYRY 66 (146)
Q Consensus 19 ~P~~~~~eisk-~lg~~Wk~Ls~eeK~~y~~~A~~~k-~~~~~~~p~Yk~ 66 (146)
.|..++..|++ .||.-|+.+|+++|+.|.+.-...- .-|...+.+|.-
T Consensus 65 ~p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~ 114 (211)
T PRK15117 65 LPYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHG 114 (211)
T ss_pred cccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46678888877 7899999999999999998876654 458888888853
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=92.25 E-value=0.21 Score=38.44 Aligned_cols=45 Identities=11% Similarity=0.312 Sum_probs=38.3
Q ss_pred CCChhHHHH-HHHHHHhcCChhhhhhhHHHHHH-HHHHHHHhCCCCC
Q psy12430 21 DMHNSNISK-ILGARWKAMSNAEKQPYYEEQSR-LSKLHMEKHPDYR 65 (146)
Q Consensus 21 ~~~~~eisk-~lg~~Wk~Ls~eeK~~y~~~A~~-~k~~~~~~~p~Yk 65 (146)
..++..|++ .||..|+.+|+++|+.|.+.-.. ....|...+..|.
T Consensus 63 ~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~ 109 (198)
T TIGR03481 63 AFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYA 109 (198)
T ss_pred hCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478888877 78999999999999999998877 6667888877774
No 25
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=88.74 E-value=0.96 Score=32.40 Aligned_cols=38 Identities=13% Similarity=0.343 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q psy12430 3 AFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSN 40 (146)
Q Consensus 3 ay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~ 40 (146)
||.-|....-+.|+.++|++..+.+-.+|-..|..-++
T Consensus 79 Ay~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPe 116 (122)
T PF06244_consen 79 AYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPE 116 (122)
T ss_pred HHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999987654
No 26
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=84.13 E-value=1.3 Score=28.14 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=19.1
Q ss_pred CCCccCcchhHHHHHHHHHHHHHH
Q psy12430 77 DGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 77 ~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+.+|++.++|.+|+.+.+..++..
T Consensus 2 ~kpK~~~say~lF~~~~~~~~k~~ 25 (73)
T PF09011_consen 2 KKPKRPPSAYNLFMKEMRKEVKEE 25 (73)
T ss_dssp SS--SSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHh
Confidence 457889999999999999988765
No 27
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=81.94 E-value=1.7 Score=26.54 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.1
Q ss_pred CccCcchhHHHHHHHHHHHHHH
Q psy12430 79 KKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 79 ~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+|+|.++|+.|+.+.|..+...
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~ 22 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKE 22 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 5789999999999999988653
No 28
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=79.41 E-value=4.9 Score=33.20 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=45.2
Q ss_pred chhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHH
Q psy12430 2 NAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSK 55 (146)
Q Consensus 2 nay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~ 55 (146)
.|+-+|.--.-..+.+..|.|+.-|--.+.=+.|...|.-+|..|+++|++-.|
T Consensus 230 EAlSCFLIpvLrsLar~kPtMtlEeGl~ra~qEW~~~SnfdRmifyemaekFmE 283 (328)
T PF12881_consen 230 EALSCFLIPVLRSLARLKPTMTLEEGLWRAVQEWQHTSNFDRMIFYEMAEKFME 283 (328)
T ss_pred hhhhhhHHHHHHHHHhcCCCccHHHHHHHHHHHhhccccccHHHHHHHHHHHcc
Confidence 356667766667777788999999988889999999999999999999987543
No 29
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=77.16 E-value=3 Score=25.65 Aligned_cols=22 Identities=9% Similarity=0.288 Sum_probs=17.4
Q ss_pred CccCcchhHHHHHHHHHHHHHH
Q psy12430 79 KKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 79 ~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+++|.++|.+|+.+.+..+.+.
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~ 22 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEE 22 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999988764
No 30
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=76.15 E-value=3 Score=26.38 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=18.5
Q ss_pred ccCcchhHHHHHHHHHHHHHH
Q psy12430 80 KMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 80 k~~~s~~~~~~~~~r~~~~~~ 100 (146)
|+|.++|+.|+++.|..+.+.
T Consensus 3 KrP~naf~~F~~~~r~~~~~~ 23 (72)
T cd01388 3 KRPMNAFMLFSKRHRRKVLQE 23 (72)
T ss_pred CCCCcHHHHHHHHHHHHHHHH
Confidence 678999999999999988764
No 31
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=75.82 E-value=1.8 Score=31.99 Aligned_cols=47 Identities=21% Similarity=0.455 Sum_probs=34.8
Q ss_pred CCCCChhHHHH-HHHHHHhcCChhhhhhhHHHHHHH-HHHHHHhCCCCC
Q psy12430 19 CPDMHNSNISK-ILGARWKAMSNAEKQPYYEEQSRL-SKLHMEKHPDYR 65 (146)
Q Consensus 19 ~P~~~~~eisk-~lg~~Wk~Ls~eeK~~y~~~A~~~-k~~~~~~~p~Yk 65 (146)
.|.+++..|++ .||.-|+.|++++|+.|.+.-... ...|...+..|.
T Consensus 35 ~~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~ 83 (170)
T PF05494_consen 35 DPYFDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYS 83 (170)
T ss_dssp GGGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HHhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45578888876 468899999999999999887664 455888888875
No 32
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=75.19 E-value=3.3 Score=26.46 Aligned_cols=22 Identities=0% Similarity=0.048 Sum_probs=19.2
Q ss_pred CccCcchhHHHHHHHHHHHHHH
Q psy12430 79 KKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 79 ~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
.|+|.++|++|+++.|..+.+.
T Consensus 2 ~kRP~naf~lf~~~~r~~~~~~ 23 (77)
T cd01389 2 IPRPRNAFILYRQDKHAQLKTE 23 (77)
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 4789999999999999988763
No 33
>smart00398 HMG high mobility group.
Probab=73.14 E-value=4.5 Score=24.64 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=19.0
Q ss_pred CccCcchhHHHHHHHHHHHHHH
Q psy12430 79 KKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 79 ~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+++|.++|..|+.+.|..+...
T Consensus 2 pkrp~~~y~~f~~~~r~~~~~~ 23 (70)
T smart00398 2 PKRPMSAFMLFSQENRAKIKAE 23 (70)
T ss_pred cCCCCcHHHHHHHHHHHHHHHH
Confidence 5789999999999999988653
No 34
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=71.01 E-value=3.8 Score=23.58 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=16.2
Q ss_pred ChhHHHHHHH-HHHhcCChhhhhhhHHHHH
Q psy12430 23 HNSNISKILG-ARWKAMSNAEKQPYYEEQS 51 (146)
Q Consensus 23 ~~~eisk~lg-~~Wk~Ls~eeK~~y~~~A~ 51 (146)
++.+|+.-+. +.|..|.+.+|..|.+.-.
T Consensus 2 tf~Dvav~fs~eEW~~L~~~Qk~ly~dvm~ 31 (41)
T PF01352_consen 2 TFEDVAVYFSQEEWELLDPAQKNLYRDVML 31 (41)
T ss_dssp -----TT---HHHHHTS-HHHHHHHHHHHH
T ss_pred eEEEEEEEcChhhcccccceecccchhHHH
Confidence 3455665555 5699999999999987643
No 35
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=70.68 E-value=14 Score=23.69 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q psy12430 2 NAFMVWAKDERRKILKACPDMHNSNISKILGAR 34 (146)
Q Consensus 2 nay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~ 34 (146)
|.|.-|-+..++.++.+.|+.+..+|..++.++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~at~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDATPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 568889999999999999999999998777653
No 36
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=70.32 E-value=5.4 Score=23.94 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.3
Q ss_pred CccCcchhHHHHHHHHHHHHH
Q psy12430 79 KKMRISEYKTLMRQRRNEMRQ 99 (146)
Q Consensus 79 ~k~~~s~~~~~~~~~r~~~~~ 99 (146)
+++|.++|..|+.+.+..+..
T Consensus 1 pkrp~~af~~f~~~~~~~~~~ 21 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKA 21 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 478899999999999998765
No 37
>KOG0526|consensus
Probab=65.84 E-value=6.6 Score=34.84 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=27.2
Q ss_pred CCCcccCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 70 PKRTCIVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 70 ~kr~~~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
.|++++++.|||..++|..+.+..|..|...
T Consensus 527 ~kk~kdpnapkra~sa~m~w~~~~r~~ik~d 557 (615)
T KOG0526|consen 527 GKKKKDPNAPKRATSAYMLWLNASRESIKED 557 (615)
T ss_pred cccCCCCCCCccchhHHHHHHHhhhhhHhhc
Confidence 4456899999999999999999999999763
No 38
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.98 E-value=9.7 Score=29.59 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCChhhhhhhHHHHHHH-HHHHHHhCCCCCCCCC
Q psy12430 28 SKILGARWKAMSNAEKQPYYEEQSRL-SKLHMEKHPDYRYRPR 69 (146)
Q Consensus 28 sk~lg~~Wk~Ls~eeK~~y~~~A~~~-k~~~~~~~p~Yk~~p~ 69 (146)
...||.-||.+|+|+++.|.+.-... .+.|...+-+|+-+.-
T Consensus 77 ~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~~ 119 (202)
T COG2854 77 KLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQTL 119 (202)
T ss_pred HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 45689999999999999999887664 4568899999976543
No 39
>KOG3223|consensus
Probab=62.09 E-value=12 Score=28.91 Aligned_cols=45 Identities=18% Similarity=0.455 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHH
Q psy12430 3 AFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQ 50 (146)
Q Consensus 3 ay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A 50 (146)
||.-|-...-+.|+.++|++..++.-.+|-.+|..-++. ||...+
T Consensus 171 A~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~KsPDN---P~Nq~~ 215 (221)
T KOG3223|consen 171 AFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKSPDN---PFNQAA 215 (221)
T ss_pred HHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhCCCC---hhhHHh
Confidence 688888888999999999999999999999999877654 555443
No 40
>KOG0381|consensus
Probab=61.78 E-value=10 Score=24.96 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=20.3
Q ss_pred CCCccCcchhHHHHHHHHHHHHH
Q psy12430 77 DGKKMRISEYKTLMRQRRNEMRQ 99 (146)
Q Consensus 77 ~~~k~~~s~~~~~~~~~r~~~~~ 99 (146)
..++++.++|+.|+.+.+..+..
T Consensus 21 ~~pkrp~sa~~~f~~~~~~~~k~ 43 (96)
T KOG0381|consen 21 QAPKRPLSAFFLFSSEQRSKIKA 43 (96)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHH
Confidence 47899999999999998888765
No 41
>PRK10236 hypothetical protein; Provisional
Probab=61.22 E-value=9.1 Score=30.45 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChhhhhhhHHH
Q psy12430 27 ISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 27 isk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
+.+++...|+.|+++|++.+.+.
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~ 140 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHA 140 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHH
Confidence 68999999999999999776543
No 42
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=59.31 E-value=14 Score=22.05 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=19.4
Q ss_pred CChhHHHHHHHHHHhcCChhhhhhhHHHHHH
Q psy12430 22 MHNSNISKILGARWKAMSNAEKQPYYEEQSR 52 (146)
Q Consensus 22 ~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~ 52 (146)
.+..||. .|+.|++++|.........
T Consensus 22 RT~dEI~-----~W~~~s~~er~~i~~~l~~ 47 (51)
T PF06945_consen 22 RTLDEIR-----DWKSMSDDERRAILARLRA 47 (51)
T ss_pred CcHHHHH-----HHhhCCHHHHHHHHHHHHH
Confidence 4566776 8999999999877655443
No 43
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=58.72 E-value=25 Score=26.30 Aligned_cols=34 Identities=6% Similarity=0.176 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHH
Q psy12430 26 NISKILGARWKAMSNAEKQPYYEEQSRLSKLHME 59 (146)
Q Consensus 26 eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~ 59 (146)
+..++..+++..|++|+|..|.+.-++.-++...
T Consensus 118 ~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~ 151 (162)
T PRK12751 118 EMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQ 151 (162)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4567778899999999999999887776666543
No 44
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=58.05 E-value=27 Score=24.51 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHH
Q psy12430 24 NSNISKILGARWKAMSNAEKQPYYEEQSRLSKL 56 (146)
Q Consensus 24 ~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~ 56 (146)
..-|++.+++.++.|+.|-|+.|.++...--+.
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~fP~~ 77 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLLFPDA 77 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHCcHH
Confidence 345778899999999999999999987664443
No 45
>KOG3838|consensus
Probab=55.70 E-value=39 Score=29.17 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=17.7
Q ss_pred ChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 39 SNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 39 s~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
.+.||++|.++.+....++.++-.+|+
T Consensus 270 qe~ek~kyqeEfe~~q~elek~k~efk 296 (497)
T KOG3838|consen 270 QELEKAKYQEEFEWAQLELEKRKDEFK 296 (497)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHhhhc
Confidence 455777777777766666666655553
No 46
>PRK14283 chaperone protein DnaJ; Provisional
Probab=51.53 E-value=34 Score=28.73 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|..+++.||+.+ ..+.-+.|.+.|..|++.+|..-++.
T Consensus 23 k~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 23 KKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 4677888888899975 44678899999999999998776665
No 47
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=50.72 E-value=25 Score=21.11 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCC--hh----HHHHHHHHHHhcCChhhhh
Q psy12430 8 AKDERRKILKACPDMH--NS----NISKILGARWKAMSNAEKQ 44 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~--~~----eisk~lg~~Wk~Ls~eeK~ 44 (146)
.+.++..++.-||+.. .. ++...|.+.|..|+..++.
T Consensus 18 k~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R 60 (64)
T PF00226_consen 18 KKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERR 60 (64)
T ss_dssp HHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHH
Confidence 4567778888899863 23 6889999999998766653
No 48
>KOG1610|consensus
Probab=50.14 E-value=43 Score=27.86 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHh-------CCC------CChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHh
Q psy12430 7 WAKDERRKILKA-------CPD------MHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60 (146)
Q Consensus 7 F~~~~r~~i~~~-------~P~------~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~ 60 (146)
|+-..|.++..- .|+ .+...+.+.+-++|..|++|.|+.|-+.+..+.+.-.+.
T Consensus 188 f~D~lR~EL~~fGV~VsiiePG~f~T~l~~~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~~~~~~~ 254 (322)
T KOG1610|consen 188 FSDSLRRELRPFGVKVSIIEPGFFKTNLANPEKLEKRMKEIWERLPQETKDEYGEDYFEDYKKSLEK 254 (322)
T ss_pred HHHHHHHHHHhcCcEEEEeccCccccccCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666543 232 234678899999999999999999988776665554433
No 49
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=50.01 E-value=29 Score=20.40 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCCCh------hHHHHHHHHHHhcCChhh
Q psy12430 8 AKDERRKILKACPDMHN------SNISKILGARWKAMSNAE 42 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~------~eisk~lg~~Wk~Ls~ee 42 (146)
.+.+|..++.-||+... .+....|.+.|..|.+..
T Consensus 19 k~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 19 KKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 35667777788998755 356777777777776543
No 50
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=49.71 E-value=39 Score=27.47 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++-||+.+ ..+.-+.|.+.|..|++.+|..-++.
T Consensus 22 k~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~ 67 (306)
T PRK10266 22 KTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 67 (306)
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4567888888899965 55678899999999998777655554
No 51
>PRK14299 chaperone protein DnaJ; Provisional
Probab=49.32 E-value=39 Score=27.28 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++.+|..-++.
T Consensus 22 k~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~ 67 (291)
T PRK14299 22 KKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDT 67 (291)
T ss_pred HHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 4567888888899875 34677889999999998877655554
No 52
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=49.25 E-value=43 Score=25.23 Aligned_cols=36 Identities=6% Similarity=0.172 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHH
Q psy12430 24 NSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHME 59 (146)
Q Consensus 24 ~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~ 59 (146)
..++.++-.++...|++|+|..|.+..++.-.++.+
T Consensus 110 ~Vem~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~ 145 (166)
T PRK10363 110 QVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRD 145 (166)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 346678888999999999999998877766666543
No 53
>PRK14279 chaperone protein DnaJ; Provisional
Probab=49.16 E-value=31 Score=29.21 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++-||+.+. .+.-+.|.+.|..|++++|..-++.
T Consensus 27 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~ 73 (392)
T PRK14279 27 KKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDE 73 (392)
T ss_pred HHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 35778888889998753 3667889999999999988766665
No 54
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=49.03 E-value=46 Score=25.55 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhh
Q psy12430 3 AFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQ 44 (146)
Q Consensus 3 ay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~ 44 (146)
+-++|...+-+.+..+| .-..|-.||..-|+.||++-++
T Consensus 131 acLVFL~~~f~~F~~~~---deeK~v~Il~KTw~KMS~~g~~ 169 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKH---DEEKIVDILRKTWRKMSERGHE 169 (185)
T ss_pred HHHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHCCHHHHH
Confidence 45789999999988887 5566788899999999998653
No 55
>PRK14296 chaperone protein DnaJ; Provisional
Probab=48.59 E-value=39 Score=28.39 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++-||+.+ ..+--+.|.+.|..|++++|..-++.
T Consensus 22 k~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 22 RQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 3567888888899975 34567789999999999888766665
No 56
>PRK14291 chaperone protein DnaJ; Provisional
Probab=48.53 E-value=37 Score=28.54 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++.+|..-++.
T Consensus 21 k~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~ 66 (382)
T PRK14291 21 KKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQ 66 (382)
T ss_pred HHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 3677888888899976 34677899999999999887765554
No 57
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=48.44 E-value=41 Score=25.23 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhC
Q psy12430 28 SKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKH 61 (146)
Q Consensus 28 sk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~ 61 (146)
.++..+.+..|++|+|..|.++-++-.+.+.+.+
T Consensus 127 ~~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 127 LEKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678999999999999998877777776654
No 58
>PRK14281 chaperone protein DnaJ; Provisional
Probab=47.76 E-value=36 Score=28.84 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+..||+.+. .+..+.|.+.|..|++.+|..-++.
T Consensus 21 kkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 67 (397)
T PRK14281 21 KKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQ 67 (397)
T ss_pred HHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 46778888888999763 3677999999999998887665554
No 59
>PRK14295 chaperone protein DnaJ; Provisional
Probab=47.02 E-value=48 Score=27.99 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChhhhhhhHHHHH
Q psy12430 8 AKDERRKILKACPDMH-----NSNISKILGARWKAMSNAEKQPYYEEQS 51 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~-----~~eisk~lg~~Wk~Ls~eeK~~y~~~A~ 51 (146)
.+.+|...++-||+.+ ..+.-+.|.+.|..|++.+|...++.+.
T Consensus 27 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~ 75 (389)
T PRK14295 27 KKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEAR 75 (389)
T ss_pred HHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHH
Confidence 3567788888899975 3467789999999999998877766543
No 60
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=46.36 E-value=11 Score=24.57 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=19.3
Q ss_pred CCCChhHHHHHHHHHHhcCChhh
Q psy12430 20 PDMHNSNISKILGARWKAMSNAE 42 (146)
Q Consensus 20 P~~~~~eisk~lg~~Wk~Ls~ee 42 (146)
+++.+..|++.||..|+.|-.+=
T Consensus 3 ~~~~l~~ia~~lG~dW~~LAr~L 25 (84)
T cd08317 3 ADIRLADISNLLGSDWPQLAREL 25 (84)
T ss_pred ccchHHHHHHHHhhHHHHHHHHc
Confidence 56788999999999999986544
No 61
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=46.23 E-value=42 Score=28.83 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChhhhhhhHHHH
Q psy12430 8 AKDERRKILKACPDMH-NSNISKILGARWKAMSNAEKQPYYEEQ 50 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~-~~eisk~lg~~Wk~Ls~eeK~~y~~~A 50 (146)
.+.+|...++.||+.+ ..+.-+.|.+.|..|++.+|..-++..
T Consensus 46 KkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~ 89 (421)
T PTZ00037 46 KKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEY 89 (421)
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhh
Confidence 4678888899999975 347788999999999999888777753
No 62
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=45.22 E-value=13 Score=24.83 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.1
Q ss_pred HHhcCChhhhhhhHHH
Q psy12430 34 RWKAMSNAEKQPYYEE 49 (146)
Q Consensus 34 ~Wk~Ls~eeK~~y~~~ 49 (146)
-|+.||+|||+.|.+.
T Consensus 25 Gyntms~eEk~~~D~~ 40 (97)
T PF12650_consen 25 GYNTMSKEEKEKYDKK 40 (97)
T ss_pred hcccCCHHHHHHhhHH
Confidence 5889999999988543
No 63
>PRK14284 chaperone protein DnaJ; Provisional
Probab=44.48 E-value=46 Score=28.12 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+..||+.+. .+..+.|.+.|..|++.+|..-++.
T Consensus 19 kkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 65 (391)
T PRK14284 19 KKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDR 65 (391)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 46778888888999764 3577899999999998887666654
No 64
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=44.48 E-value=38 Score=23.36 Aligned_cols=26 Identities=12% Similarity=0.396 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChhhhhhhHHHHH
Q psy12430 26 NISKILGARWKAMSNAEKQPYYEEQS 51 (146)
Q Consensus 26 eisk~lg~~Wk~Ls~eeK~~y~~~A~ 51 (146)
+|-.-+.+.|..|+++.|..+...|.
T Consensus 11 ~~L~pl~~~W~~l~~~qr~k~l~~a~ 36 (107)
T PF11304_consen 11 QALAPLAERWNSLPPEQRRKWLQIAE 36 (107)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455666777777777766666654
No 65
>PRK14285 chaperone protein DnaJ; Provisional
Probab=43.93 E-value=43 Score=27.99 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|..+++-||+.+. .+.-+.|.+.|..|++++|..-++.
T Consensus 21 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~ 67 (365)
T PRK14285 21 KKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDR 67 (365)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHh
Confidence 46778888889999753 3567889999999998877655554
No 66
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=43.75 E-value=97 Score=21.31 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=17.7
Q ss_pred HHHHhCCCCChhHHHHHHH--HHHhcCChhhhhh
Q psy12430 14 KILKACPDMHNSNISKILG--ARWKAMSNAEKQP 45 (146)
Q Consensus 14 ~i~~~~P~~~~~eisk~lg--~~Wk~Ls~eeK~~ 45 (146)
.+...++.|+..+-.++.. ..|.+||++++..
T Consensus 33 ~~a~r~~~mspeqq~r~~~rm~~W~~LspeqR~~ 66 (107)
T PF11304_consen 33 QIAERWPSMSPEQQQRLRERMRRWAALSPEQRQQ 66 (107)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455556666555443333 3677777777643
No 67
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=43.34 E-value=37 Score=23.92 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 26 NISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 26 eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
+--+.|-+.|+.|++++++.....++...+.+.+.+.+|-
T Consensus 87 ~~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~ 126 (135)
T PRK09706 87 EDQKELLELFDALPESEQDAQLSEMRARVENFNKLFEELL 126 (135)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999999988888873
No 68
>PRK14280 chaperone protein DnaJ; Provisional
Probab=42.78 E-value=55 Score=27.48 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++.+|..-++.
T Consensus 22 k~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 67 (376)
T PRK14280 22 KKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQ 67 (376)
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHh
Confidence 4667777888899865 45778899999999998887666554
No 69
>PRK14287 chaperone protein DnaJ; Provisional
Probab=40.74 E-value=63 Score=27.09 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++-||+.+ ..+.-+.|.+.|..|++.+|..-++.
T Consensus 22 k~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 22 KKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred HHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 3567888888899975 33567889999999998887766665
No 70
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=39.43 E-value=58 Score=25.45 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhcCChhhhhhhHHHHHHHHHH
Q psy12430 25 SNISKILGARWKAMSNAEKQPYYEEQSRLSKL 56 (146)
Q Consensus 25 ~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~ 56 (146)
.++.+.|.+.+..|++++++.-.+.+++.++.
T Consensus 13 ~~e~~~L~~~k~~Ls~~e~~~i~~~~~~L~~~ 44 (248)
T PF08367_consen 13 EEEKEKLAAYKASLSEEEKEKIIEQTKELKER 44 (248)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999998887655
No 71
>PRK14155 heat shock protein GrpE; Provisional
Probab=38.00 E-value=29 Score=26.99 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy12430 129 MMPFSPGSPGSMDSHDE 145 (146)
Q Consensus 129 ~~~~~p~~~g~~~~~~~ 145 (146)
-..++--++||+|++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~ 206 (208)
T PRK14155 190 YASAAADGDGSGGSFDT 206 (208)
T ss_pred CCCccccCCCCCCcccC
Confidence 34567789999999997
No 72
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=37.47 E-value=36 Score=21.37 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=15.8
Q ss_pred HHHHHHhcCChhhhhhhHH
Q psy12430 30 ILGARWKAMSNAEKQPYYE 48 (146)
Q Consensus 30 ~lg~~Wk~Ls~eeK~~y~~ 48 (146)
..+..|+.|+++||+.+.+
T Consensus 12 Qa~~ly~~l~~~er~~lv~ 30 (68)
T PF06628_consen 12 QARDLYRVLSDEERERLVE 30 (68)
T ss_dssp HHHHHHHHSSHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHH
Confidence 4678999999999988764
No 73
>PRK09897 hypothetical protein; Provisional
Probab=36.95 E-value=1.1e+02 Score=27.11 Aligned_cols=37 Identities=5% Similarity=0.111 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCC
Q psy12430 26 NISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHP 62 (146)
Q Consensus 26 eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p 62 (146)
.|.-.+...|+.|+.++|+.|.......-.-|...||
T Consensus 355 ~l~~~~~~iw~~l~~~d~~rf~~~l~~~~~~~~~~mP 391 (534)
T PRK09897 355 RLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIP 391 (534)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHhhhHHHHHhccCCC
Confidence 3566788999999999999998776655444443333
No 74
>PRK14294 chaperone protein DnaJ; Provisional
Probab=36.77 E-value=69 Score=26.77 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++-||+.+. .+.-+.|.+.|..|++.+|..-++.
T Consensus 22 k~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~ 68 (366)
T PRK14294 22 KKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQ 68 (366)
T ss_pred HHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 35678888888999764 3577788899999988887655554
No 75
>PF15581 Imm35: Immunity protein 35
Probab=36.76 E-value=32 Score=23.25 Aligned_cols=22 Identities=9% Similarity=0.422 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHHhcCChhhh
Q psy12430 22 MHNSNISKILGARWKAMSNAEK 43 (146)
Q Consensus 22 ~~~~eisk~lg~~Wk~Ls~eeK 43 (146)
.+...+..+|.+.|+-|++++=
T Consensus 30 ~~i~~l~~lIe~eWRGl~~~qV 51 (93)
T PF15581_consen 30 RTIRNLESLIEHEWRGLPEEQV 51 (93)
T ss_pred HHHHHHHHHHHHHHcCCCHHHH
Confidence 3455688999999999998863
No 76
>PRK14286 chaperone protein DnaJ; Provisional
Probab=36.16 E-value=79 Score=26.53 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++.||+.+. .+.-+.|.+.+..|++.+|..-++.
T Consensus 22 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (372)
T PRK14286 22 KSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQ 68 (372)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 46778888888999753 3677889999999988876655553
No 77
>PRK14288 chaperone protein DnaJ; Provisional
Probab=36.11 E-value=81 Score=26.43 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++-||+.+. .+.-+.|.+.+..|++++|..-+++
T Consensus 21 kkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~ 67 (369)
T PRK14288 21 KKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDR 67 (369)
T ss_pred HHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 46788888889999764 3566789999999998887655544
No 78
>PRK14276 chaperone protein DnaJ; Provisional
Probab=35.94 E-value=77 Score=26.62 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++-||+.+ ..+.-+.|.+.|..|++.+|..-++.
T Consensus 22 k~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 67 (380)
T PRK14276 22 KKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQ 67 (380)
T ss_pred HHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence 3567777788899865 35678899999999998887665554
No 79
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=35.19 E-value=67 Score=27.61 Aligned_cols=39 Identities=5% Similarity=-0.026 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy12430 26 NISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 64 (146)
Q Consensus 26 eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Y 64 (146)
+.++..-+.|+.++.++|..+...+...-++|.+++...
T Consensus 6 ~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~ 44 (439)
T cd07081 6 AAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKL 44 (439)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666778999999999999999888888888776665
No 80
>KOG0713|consensus
Probab=35.19 E-value=93 Score=26.09 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChhhhhhhHHHHHH
Q psy12430 8 AKDERRKILKACPDMH-----NSNISKILGARWKAMSNAEKQPYYEEQSR 52 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~-----~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~ 52 (146)
.+.+|.-.++-||+.+ ..+--+.|+..|..|++++|..=++.+-+
T Consensus 34 KkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 34 KKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 3567777788888854 45677899999999999999877776653
No 81
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=35.05 E-value=39 Score=19.17 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=17.6
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCh
Q psy12430 16 LKACPDMHNSNISKILGARWKAMSN 40 (146)
Q Consensus 16 ~~~~P~~~~~eisk~lg~~Wk~Ls~ 40 (146)
..++|.++..||++.++--+..+..
T Consensus 12 l~~~~~~t~~ela~~~~is~~tv~~ 36 (48)
T PF13412_consen 12 LRENPRITQKELAEKLGISRSTVNR 36 (48)
T ss_dssp HHHCTTS-HHHHHHHHTS-HHHHHH
T ss_pred HHHcCCCCHHHHHHHhCCCHHHHHH
Confidence 4468999999999999866655543
No 82
>PRK14298 chaperone protein DnaJ; Provisional
Probab=34.12 E-value=74 Score=26.78 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 9 KDERRKILKACPDMHN----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 9 ~~~r~~i~~~~P~~~~----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
+.+|...++-||+.+. .+.-+.|.+.|..|++.+|..-++.
T Consensus 24 ~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (377)
T PRK14298 24 KAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDR 68 (377)
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhh
Confidence 5677777888998752 3456789999999999887766664
No 83
>PRK14290 chaperone protein DnaJ; Provisional
Probab=33.96 E-value=59 Score=27.15 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCh------hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN------SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~------~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++.||+.+. .+.-+.|.+.|..|++++|..-++.
T Consensus 21 k~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (365)
T PRK14290 21 KKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68 (365)
T ss_pred HHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence 35677888888999753 2566789999999988886655554
No 84
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=33.76 E-value=86 Score=17.83 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCC
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMS 39 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls 39 (146)
.+.+|..++.-||+... .+....|.+.|..|+
T Consensus 18 k~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 18 KKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 35667788888998654 345566666666664
No 85
>PRK14297 chaperone protein DnaJ; Provisional
Probab=32.01 E-value=81 Score=26.47 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+.-||+.+. .+..+.|.+.|..|++.+|..-++.
T Consensus 22 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 68 (380)
T PRK14297 22 KKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQ 68 (380)
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhh
Confidence 35677888888999753 3677899999999999887766654
No 86
>PRK14278 chaperone protein DnaJ; Provisional
Probab=31.88 E-value=92 Score=26.18 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++-||+.+. .+.-+.|.+.|..|++.+|..=++.
T Consensus 21 k~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~ 66 (378)
T PRK14278 21 KRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDL 66 (378)
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence 35778888888999753 3566789999999988776655543
No 87
>PRK14277 chaperone protein DnaJ; Provisional
Probab=31.03 E-value=1e+02 Score=26.00 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++-||+.+. .+.-+.|.+.|..|++.+|..-++.
T Consensus 23 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 69 (386)
T PRK14277 23 KKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQ 69 (386)
T ss_pred HHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 46778888888999753 3577899999999998887655554
No 88
>KOG2880|consensus
Probab=30.32 E-value=1.1e+02 Score=26.06 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHHHH--HhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 2 NAFMVWAKDERRKIL--KACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 2 nay~lF~~~~r~~i~--~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|||+||.+-+---|. .+||+.. -+-...-..-+.|-+++-..-.++..++..+|..++.+|.
T Consensus 53 nafvLy~ry~tLfiEkipkHrDy~--s~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~ 116 (424)
T KOG2880|consen 53 NAFVLYLRYITLFIEKIPKHRDYR--SVKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYD 116 (424)
T ss_pred hhhhHHHHHHHHHHHhcccCcchh--hhchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 788888765432221 2355532 2222233333333355555566667777778887777774
No 89
>KOG1827|consensus
Probab=30.04 E-value=3.3 Score=37.30 Aligned_cols=42 Identities=21% Similarity=0.431 Sum_probs=37.6
Q ss_pred chhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhh
Q psy12430 2 NAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEK 43 (146)
Q Consensus 2 nay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK 43 (146)
.+|++|..+.+..+-.++|.+.+++++.++|-.|..|+..-|
T Consensus 554 ~~~~~~s~~~~~~~~~~np~v~~~~~~~~vg~~~~~lp~~~k 595 (629)
T KOG1827|consen 554 EPYILDSIENRTIIWFENPTVGFGEVSIIVGNDWDKLPNINK 595 (629)
T ss_pred ccccccccccCceeeeeCCCcccceeEEeecCCcccCccccc
Confidence 468899999999999999999999999999999999994444
No 90
>PRK10455 periplasmic protein; Reviewed
Probab=29.88 E-value=1.1e+02 Score=22.71 Aligned_cols=27 Identities=4% Similarity=0.153 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChhhhhhhHHHHHH
Q psy12430 26 NISKILGARWKAMSNAEKQPYYEEQSR 52 (146)
Q Consensus 26 eisk~lg~~Wk~Ls~eeK~~y~~~A~~ 52 (146)
+..+.-.+++..|++|+|+.|.+.-++
T Consensus 118 ~~~~~~~qiy~vLTPEQr~q~~~~~ek 144 (161)
T PRK10455 118 AHMETQNKIYNVLTPEQKKQFNANFEK 144 (161)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445666788999999999999876533
No 91
>PRK14292 chaperone protein DnaJ; Provisional
Probab=29.79 E-value=1e+02 Score=25.75 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+..||+.+ ..+.-+.|.+.+..|++.++...++.
T Consensus 20 k~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~ 65 (371)
T PRK14292 20 KSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDR 65 (371)
T ss_pred HHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence 3567788888899876 34667788888888887776655554
No 92
>KOG0528|consensus
Probab=28.73 E-value=31 Score=30.28 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=48.7
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCC
Q psy12430 11 ERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPR 69 (146)
Q Consensus 11 ~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~ 69 (146)
.+.....+.|...+..|+ +.+..|++.+...+..+....+...+.|..+-+.|.+.+.
T Consensus 28 ~~~~~~~e~~~s~~q~i~-~~~ql~~~~s~q~~~a~~~~s~~~~q~h~~~q~~~~i~~~ 85 (511)
T KOG0528|consen 28 SLAEKELELPTSIHQLIS-LRGQLLANHSEQKKLAASDSSAQEQQMHLAEQQQEQIAPQ 85 (511)
T ss_pred hhhhhhhccCCCcceeee-cchhhcccccccchhhhhhhhHHHHHHHHHHhHHHhhhHH
Confidence 344445567888888888 9999999999999999999999999999999999988665
No 93
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=28.46 E-value=55 Score=22.08 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=16.6
Q ss_pred HHhcCChhhhhhhHHHHHHHHH
Q psy12430 34 RWKAMSNAEKQPYYEEQSRLSK 55 (146)
Q Consensus 34 ~Wk~Ls~eeK~~y~~~A~~~k~ 55 (146)
-|..|+++||+.+.+.+.+.-.
T Consensus 60 py~~L~e~eK~~dr~~~~e~lk 81 (94)
T PF02026_consen 60 PYDELSEEEKEKDRDMVRETLK 81 (94)
T ss_dssp -GGGS-HHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHhHHHHHHHHH
Confidence 5999999999999988876543
No 94
>PF13945 NST1: Salt tolerance down-regulator
Probab=27.80 E-value=1.4e+02 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 24 NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 24 ~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
..+..-.|-+.|-.|+++||+.....
T Consensus 100 s~eEre~LkeFW~SL~eeERr~LVkI 125 (190)
T PF13945_consen 100 SQEEREKLKEFWESLSEEERRSLVKI 125 (190)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 34566789999999999999877644
No 95
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=27.52 E-value=1.2e+02 Score=25.09 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++.+|..-++.
T Consensus 18 k~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 63 (354)
T TIGR02349 18 KKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQ 63 (354)
T ss_pred HHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence 4567777788899875 33577889999999988886554443
No 96
>PHA03335 hypothetical protein; Provisional
Probab=27.34 E-value=31 Score=28.71 Aligned_cols=41 Identities=15% Similarity=0.366 Sum_probs=31.4
Q ss_pred CchhHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChh
Q psy12430 1 MNAFMVWAKDERRKILKACPDMH-----NSNISKILGARWKAMSNA 41 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~-----~~eisk~lg~~Wk~Ls~e 41 (146)
|||||-|..-+++++...-+... ..++--.++-.|++|+-.
T Consensus 258 LNayiNWf~fn~qQfv~~g~~~ps~~~~~~~~DlRCS~C~r~~~~R 303 (385)
T PHA03335 258 LNAYINWFAFNRQQFVNPGITLPSSELSQEALDLRCSGCWRLLSIR 303 (385)
T ss_pred HHHHHhHHHhhhHHhhcCCCCCCCCchhhhcccchhHHHHHHHHHH
Confidence 69999999999999987755443 334556789999999754
No 97
>PRK10767 chaperone protein DnaJ; Provisional
Probab=27.05 E-value=1.4e+02 Score=24.93 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+.-||+.+. .+.-+.|.+.|..|++.+|..-++.
T Consensus 22 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (371)
T PRK10767 22 KKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68 (371)
T ss_pred HHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhh
Confidence 35678888888999753 2566789999999988877555443
No 98
>PRK14282 chaperone protein DnaJ; Provisional
Probab=26.39 E-value=1.2e+02 Score=25.34 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCh------hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN------SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~------~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+..||+.+. .+.-+.|.+.+..|++.+|..-++.
T Consensus 22 k~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 69 (369)
T PRK14282 22 KRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDR 69 (369)
T ss_pred HHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence 46778888888999753 2466778888888888877665554
No 99
>PHA03102 Small T antigen; Reviewed
Probab=25.73 E-value=1.3e+02 Score=22.24 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChhhh
Q psy12430 8 AKDERRKILKACPDMH-NSNISKILGARWKAMSNAEK 43 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~-~~eisk~lg~~Wk~Ls~eeK 43 (146)
.+.+|..++.-||+.. ..+..+.|.+.|..|.+..+
T Consensus 25 KkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~ 61 (153)
T PHA03102 25 RKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVK 61 (153)
T ss_pred HHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHH
Confidence 4677888888999974 34566778888888776554
No 100
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=25.67 E-value=1.2e+02 Score=20.25 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=15.4
Q ss_pred HHHhcCChhhhhhhHHHHHHH
Q psy12430 33 ARWKAMSNAEKQPYYEEQSRL 53 (146)
Q Consensus 33 ~~Wk~Ls~eeK~~y~~~A~~~ 53 (146)
++=..|+++||..|.++.++.
T Consensus 60 ~LV~qMT~~EKEaYi~v~Q~~ 80 (86)
T PF11521_consen 60 ELVAQMTPEEKEAYIQVGQEM 80 (86)
T ss_dssp HHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHH
Confidence 344689999999999876654
No 101
>KOG0715|consensus
Probab=25.60 E-value=1.4e+02 Score=24.17 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHHHHHH
Q psy12430 9 KDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEEQSRL 53 (146)
Q Consensus 9 ~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~ 53 (146)
..++...+.-||+.+ ..+..+.|.+.|..|+++||..=++..-..
T Consensus 62 ~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 62 SAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred HHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 456677777888865 566788999999999999987766665554
No 102
>PRK14301 chaperone protein DnaJ; Provisional
Probab=25.18 E-value=1.3e+02 Score=25.21 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...+.-||+.+. .+.-+.|.+.|..|++.+|..-++.
T Consensus 22 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 68 (373)
T PRK14301 22 KKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDR 68 (373)
T ss_pred HHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 35778888888999753 2466788899999988876655554
No 103
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=24.71 E-value=1e+02 Score=21.76 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCChhhhhhhHHHHHH--HHHHHHHhCCC
Q psy12430 28 SKILGARWKAMSNAEKQPYYEEQSR--LSKLHMEKHPD 63 (146)
Q Consensus 28 sk~lg~~Wk~Ls~eeK~~y~~~A~~--~k~~~~~~~p~ 63 (146)
++.|-+.|.+-++-+|-.|++.|-. +-+.+...+..
T Consensus 19 a~~lv~~W~E~TdP~K~VfEDlaIAAyLi~LW~~~~~~ 56 (112)
T PF07757_consen 19 ARWLVDNWPESTDPQKHVFEDLAIAAYLIELWRDMYGE 56 (112)
T ss_pred HHHHHHhCcccCCchhhHHHHHHHHHHHHHHHhcccCC
Confidence 5677888999999999999987643 44445544443
No 104
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=24.69 E-value=63 Score=18.46 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC
Q psy12430 7 WAKDERRKILKACPDM-HNSNISKILGARWKAM 38 (146)
Q Consensus 7 F~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~L 38 (146)
+....+..|....-+. ++.+|++.+|--|...
T Consensus 12 ~T~~~~~~i~~~~~~~~s~~~vA~~~~vs~~TV 44 (52)
T PF13542_consen 12 ITKRLEQYILKLLRESRSFKDVARELGVSWSTV 44 (52)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHCCCHHHH
Confidence 4555666666666666 9999999999888754
No 105
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=1.5e+02 Score=25.27 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHH
Q psy12430 9 KDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYE 48 (146)
Q Consensus 9 ~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~ 48 (146)
+.+|...++-||+.+. .|--|.|.+....|++.||..=++
T Consensus 23 kAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD 67 (371)
T COG0484 23 KAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYD 67 (371)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhh
Confidence 5678888888998775 345678888888888888765555
No 106
>PF12284 HoxA13_N: Hox protein A13 N terminal; InterPro: IPR022067 This family of proteins is found in eukaryotes. Proteins in this family are typically between 149 and 306 amino acids in length. The family is found in association with PF00046 from PFAM. This family is the N-terminal of the Hox gene protein involved in formation of the digital arch of the hands and feet as well as in correct genital formation. Mutation of the protein is associated with hand-foot-genital syndrome.
Probab=23.39 E-value=1.4e+02 Score=21.29 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=21.2
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy12430 100 LWCRGEAGPSGSGGPAFPFPGDGSLSPSDMMPFSPGSPGSM 140 (146)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~~p~~~g~~ 140 (146)
++.+......+.+-.+..++..+...+.-.|+.+|+.+++.
T Consensus 24 l~aHpa~~a~s~~~~s~~~~~~g~~ep~kqc~PcpA~q~ss 64 (117)
T PF12284_consen 24 LMAHPASLAPSAAYSSSQVPVSGSAEPGKQCSPCPAPQSSS 64 (117)
T ss_pred cccCcccccCCCccccCCCCccCccCccccCCCCCCCCCCC
Confidence 33444333344444455555555555566666666655544
No 107
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=23.00 E-value=1.2e+02 Score=25.80 Aligned_cols=39 Identities=8% Similarity=-0.106 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy12430 26 NISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 64 (146)
Q Consensus 26 eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Y 64 (146)
+.++..-..|+.++.++|..+...+...-+++.+++-.-
T Consensus 5 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~ 43 (443)
T cd07132 5 RRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEA 43 (443)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 446667778999999999999988888877777665543
No 108
>PLN02150 terpene synthase/cyclase family protein
Probab=22.04 E-value=51 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=15.3
Q ss_pred ChhHHHHHHHHHHhcCChh
Q psy12430 23 HNSNISKILGARWKAMSNA 41 (146)
Q Consensus 23 ~~~eisk~lg~~Wk~Ls~e 41 (146)
...+|.+++.+.||.|.+|
T Consensus 24 A~~~i~~li~~~WK~iN~e 42 (96)
T PLN02150 24 AVSELKKMIRDNYKIVMEE 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567899999999988765
No 109
>PRK14293 chaperone protein DnaJ; Provisional
Probab=22.03 E-value=1.8e+02 Score=24.38 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYE 48 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~ 48 (146)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++++|..=++
T Consensus 21 k~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd 65 (374)
T PRK14293 21 KRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYD 65 (374)
T ss_pred HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHh
Confidence 4567777788899864 4466788999999998777544333
No 110
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=21.89 E-value=1.6e+02 Score=25.29 Aligned_cols=38 Identities=8% Similarity=0.027 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy12430 27 ISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 64 (146)
Q Consensus 27 isk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Y 64 (146)
.++..-..|+.++.+||..+...+...-+++.+++...
T Consensus 7 ~A~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~eela~~ 44 (436)
T cd07122 7 RARKAQREFATFSQEQVDKIVEAVAWAAADAAEELAKM 44 (436)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556678999999999999988888777877776555
No 111
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=21.82 E-value=1.2e+02 Score=19.40 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 26 NISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 26 eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+.....+..|++++|..|.++
T Consensus 76 ~~~~~~~~~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 76 ERAKAQHALYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Confidence 355667788999999999887653
No 112
>PRK14300 chaperone protein DnaJ; Provisional
Probab=21.64 E-value=2.1e+02 Score=24.00 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|...++-||+.+ ..+..+.|.+.+..|++.+|..-++.
T Consensus 21 k~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 21 KKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred HHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 3567888888899865 33566788888888887776655554
No 113
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=20.73 E-value=1.3e+02 Score=23.41 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=19.9
Q ss_pred HHHHhcCChhhhhhhHHHHHHHHHH
Q psy12430 32 GARWKAMSNAEKQPYYEEQSRLSKL 56 (146)
Q Consensus 32 g~~Wk~Ls~eeK~~y~~~A~~~k~~ 56 (146)
-+.|..|+++.|+-..+.+.+.-+.
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~~~~~ 237 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKEAGEY 237 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999998877665433
No 114
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=20.64 E-value=1.7e+02 Score=25.03 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCC
Q psy12430 28 SKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPD 63 (146)
Q Consensus 28 sk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~ 63 (146)
++..-..|+.++.++|..+...+...-+++.+++-.
T Consensus 47 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~ 82 (478)
T cd07085 47 AKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELAR 82 (478)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556899999999999998887777776655443
No 115
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=20.35 E-value=1.7e+02 Score=24.99 Aligned_cols=38 Identities=3% Similarity=-0.063 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCC
Q psy12430 26 NISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPD 63 (146)
Q Consensus 26 eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~ 63 (146)
+.++.....|+.++.++|......+.+.-+++..++..
T Consensus 6 ~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~ 43 (442)
T cd07084 6 LAADISTKAARRLALPKRADFLARIIQRLAAKSYDIAA 43 (442)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45666778899999999999888877777777655444
No 116
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=20.32 E-value=60 Score=23.47 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=17.9
Q ss_pred HHHHHHhcCChhhhhhhHHHHHHHHHH
Q psy12430 30 ILGARWKAMSNAEKQPYYEEQSRLSKL 56 (146)
Q Consensus 30 ~lg~~Wk~Ls~eeK~~y~~~A~~~k~~ 56 (146)
.....|..|.+.||.+|.++..++|..
T Consensus 28 e~~~~~~~Lrekek~dW~~LT~~EKkA 54 (136)
T cd00922 28 ELSAEIKALREKEKGDWKQLTLEEKKA 54 (136)
T ss_pred cchHHHHHHHHHhhCCHhhCCHHHHhh
Confidence 455667777777777777776665554
No 117
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=20.27 E-value=1.7e+02 Score=25.19 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCC
Q psy12430 28 SKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPD 63 (146)
Q Consensus 28 sk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~ 63 (146)
++.....|+.++.++|..+...+...-++|.+++-.
T Consensus 53 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 88 (488)
T PRK13252 53 AKQGQKIWAAMTAMERSRILRRAVDILRERNDELAA 88 (488)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455667899999999999987777777777665543
No 118
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=20.14 E-value=1.5e+02 Score=23.38 Aligned_cols=27 Identities=4% Similarity=0.235 Sum_probs=19.8
Q ss_pred HHHHhcCChhhhhhhHHHHHHHHHHHH
Q psy12430 32 GARWKAMSNAEKQPYYEEQSRLSKLHM 58 (146)
Q Consensus 32 g~~Wk~Ls~eeK~~y~~~A~~~k~~~~ 58 (146)
.+.|..|+++.|+-..+.+.+.-+...
T Consensus 213 ~~~w~~L~~e~q~~l~~~~~~~~~~~~ 239 (286)
T PF03480_consen 213 KDWWDSLPDEDQEALDDAADEAEARAR 239 (286)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999888776654433
Done!