Query psy12430
Match_columns 146
No_of_seqs 234 out of 1275
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:06:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i11_A Transcription factor SO 99.9 1.5E-26 5.3E-31 153.1 8.0 72 1-72 9-80 (81)
2 3f27_D Transcription factor SO 99.9 4.8E-26 1.7E-30 151.1 9.8 72 1-72 11-82 (83)
3 3u2b_C Transcription factor SO 99.9 5.3E-26 1.8E-30 149.5 9.3 72 1-72 7-78 (79)
4 1j46_A SRY, sex-determining re 99.9 1.6E-25 5.6E-30 149.5 10.7 73 1-73 9-81 (85)
5 1gt0_D Transcription factor SO 99.9 1.3E-25 4.5E-30 148.1 9.8 73 1-73 7-79 (80)
6 2lef_A LEF-1 HMG, protein (lym 99.9 2.9E-25 9.8E-30 148.6 10.9 72 1-72 7-78 (86)
7 4euw_A Transcription factor SO 99.9 4.4E-25 1.5E-29 153.3 9.4 72 1-72 34-105 (106)
8 1hry_A Human SRY; DNA, DNA-bin 99.9 6.5E-25 2.2E-29 143.4 9.1 68 1-68 9-76 (76)
9 2gzk_A Sex-determining region 99.9 3.1E-24 1.1E-28 158.0 13.3 100 1-100 9-110 (159)
10 1wz6_A HMG-box transcription f 99.9 1.2E-24 4.1E-29 144.2 8.2 70 1-70 12-81 (82)
11 2e6o_A HMG box-containing prot 99.9 6.3E-24 2.2E-28 142.4 8.8 66 1-66 22-87 (87)
12 2yrq_A High mobility group pro 99.9 8.4E-23 2.9E-27 152.4 10.9 100 1-100 20-123 (173)
13 4a3n_A Transcription factor SO 99.9 5.6E-23 1.9E-27 132.2 7.9 65 1-65 7-71 (71)
14 1k99_A Upstream binding factor 99.9 2E-22 6.8E-27 138.3 7.5 71 1-71 15-92 (99)
15 1hme_A High mobility group pro 99.9 9.1E-22 3.1E-26 128.7 8.3 66 1-66 11-76 (77)
16 2crj_A SWI/SNF-related matrix- 99.9 2.4E-22 8.4E-27 135.9 5.1 69 1-69 12-80 (92)
17 2cs1_A PMS1 protein homolog 1; 99.9 7.1E-22 2.4E-26 133.7 6.4 69 1-69 12-80 (92)
18 3tq6_A Transcription factor A, 99.8 1.1E-22 3.9E-27 156.8 1.9 97 1-97 14-133 (214)
19 1ckt_A High mobility group 1 p 99.8 2.3E-21 8E-26 124.8 7.7 64 1-64 6-71 (71)
20 2co9_A Thymus high mobility gr 99.8 5.1E-22 1.8E-26 136.8 4.2 70 1-70 22-91 (102)
21 3tmm_A Transcription factor A, 99.8 1.8E-22 6.1E-27 157.9 1.8 97 1-97 46-165 (238)
22 1wxl_A Single-strand recogniti 99.8 4.8E-21 1.7E-25 124.2 7.4 64 1-66 8-71 (73)
23 1aab_A High mobility group pro 99.8 5.1E-21 1.7E-25 126.9 6.2 66 1-66 12-79 (83)
24 2eqz_A High mobility group pro 99.8 5.3E-21 1.8E-25 127.8 6.2 65 1-65 20-86 (86)
25 3nm9_A HMG-D, high mobility gr 99.8 3.6E-21 1.2E-25 124.9 4.8 63 1-65 8-70 (73)
26 1wgf_A Upstream binding factor 99.8 1.1E-20 3.7E-25 127.4 4.8 64 1-64 25-88 (90)
27 2lhj_A High mobility group pro 99.8 5.4E-21 1.9E-25 130.5 -0.7 65 1-65 27-93 (97)
28 2d7l_A WD repeat and HMG-box D 99.8 6.2E-20 2.1E-24 121.7 4.2 63 1-66 10-73 (81)
29 1cg7_A Protein (NON histone pr 99.8 5.2E-21 1.8E-25 129.7 -1.1 65 1-65 25-89 (93)
30 1l8y_A Upstream binding factor 99.8 5.7E-19 2E-23 119.3 7.0 65 1-66 9-73 (91)
31 3fgh_A Transcription factor A, 99.8 2.5E-19 8.6E-24 114.2 4.4 60 1-64 7-66 (67)
32 2yrq_A High mobility group pro 99.8 5.3E-19 1.8E-23 131.7 5.7 66 1-66 106-171 (173)
33 2gzk_A Sex-determining region 99.7 1.1E-18 3.9E-23 128.1 5.6 65 1-65 93-157 (159)
34 1v63_A Nucleolar transcription 99.7 1.9E-18 6.5E-23 118.9 5.0 63 1-65 13-75 (101)
35 2cto_A Novel protein; high mob 99.7 2.5E-18 8.7E-23 116.7 5.5 60 1-62 15-77 (93)
36 1v64_A Nucleolar transcription 99.7 2.3E-18 7.8E-23 119.8 4.2 61 1-65 22-82 (108)
37 2yuk_A Myeloid/lymphoid or mix 99.7 1.5E-17 5.2E-22 112.2 4.1 56 1-60 27-84 (90)
38 3tq6_A Transcription factor A, 99.5 1.1E-15 3.7E-20 117.7 0.7 62 1-66 119-180 (214)
39 3tmm_A Transcription factor A, 99.5 1.2E-15 4.3E-20 119.0 0.2 63 1-67 151-213 (238)
40 1k99_A Upstream binding factor 95.8 0.0079 2.7E-07 40.1 3.7 30 70-99 2-31 (99)
41 2eqz_A High mobility group pro 95.5 0.015 5.1E-07 37.6 3.9 32 69-100 6-37 (86)
42 1wgf_A Upstream binding factor 95.4 0.016 5.6E-07 37.8 3.8 29 72-100 14-42 (90)
43 2co9_A Thymus high mobility gr 95.3 0.019 6.4E-07 38.4 4.1 31 70-100 9-39 (102)
44 2e6o_A HMG box-containing prot 94.0 0.052 1.8E-06 35.1 3.5 30 71-100 10-39 (87)
45 1aab_A High mobility group pro 93.4 0.048 1.6E-06 34.8 2.6 26 74-99 3-28 (83)
46 1hme_A High mobility group pro 93.4 0.069 2.3E-06 33.4 3.3 27 74-100 2-28 (77)
47 1v64_A Nucleolar transcription 93.1 0.061 2.1E-06 36.4 2.9 29 70-98 8-37 (108)
48 2lhj_A High mobility group pro 93.0 0.041 1.4E-06 36.3 1.8 29 72-100 16-44 (97)
49 3nm9_A HMG-D, high mobility gr 92.6 0.097 3.3E-06 32.5 3.1 24 77-100 2-25 (73)
50 1cg7_A Protein (NON histone pr 92.3 0.053 1.8E-06 35.5 1.6 26 73-98 15-40 (93)
51 2crj_A SWI/SNF-related matrix- 92.2 0.13 4.3E-06 33.5 3.4 27 74-100 3-29 (92)
52 2yuk_A Myeloid/lymphoid or mix 92.0 0.0093 3.2E-07 39.5 -2.4 27 73-99 17-43 (90)
53 2d7l_A WD repeat and HMG-box D 91.9 0.15 5.2E-06 32.6 3.4 25 76-100 3-27 (81)
54 1wxl_A Single-strand recogniti 91.3 0.18 6E-06 31.3 3.2 24 77-100 2-25 (73)
55 1hry_A Human SRY; DNA, DNA-bin 90.7 0.21 7.1E-06 31.1 3.1 25 76-100 2-26 (76)
56 2cto_A Novel protein; high mob 90.7 0.17 5.9E-06 33.4 2.8 27 74-100 6-32 (93)
57 2cs1_A PMS1 protein homolog 1; 89.7 0.31 1.1E-05 31.6 3.4 26 75-100 4-29 (92)
58 3fgh_A Transcription factor A, 89.4 0.27 9.2E-06 29.8 2.8 21 78-98 2-22 (67)
59 1ckt_A High mobility group 1 p 88.9 0.33 1.1E-05 29.6 2.9 23 78-100 1-23 (71)
60 1wz6_A HMG-box transcription f 88.7 0.42 1.4E-05 30.1 3.5 26 75-100 4-29 (82)
61 4euw_A Transcription factor SO 88.6 0.34 1.2E-05 32.4 3.1 28 73-100 24-51 (106)
62 1j46_A SRY, sex-determining re 88.6 0.41 1.4E-05 30.5 3.3 25 76-100 2-26 (85)
63 1i11_A Transcription factor SO 85.9 0.57 1.9E-05 29.4 2.8 23 77-99 3-25 (81)
64 1gt0_D Transcription factor SO 85.8 0.57 1.9E-05 29.3 2.8 22 78-99 2-23 (80)
65 2qgu_A Probable signal peptide 85.0 0.88 3E-05 34.1 3.9 47 19-65 69-117 (211)
66 3f27_D Transcription factor SO 84.5 0.72 2.5E-05 29.0 2.8 24 77-100 5-28 (83)
67 4a3n_A Transcription factor SO 82.4 0.78 2.7E-05 27.8 2.3 21 79-99 3-23 (71)
68 2lef_A LEF-1 HMG, protein (lym 80.8 1.2 4.1E-05 28.2 2.8 22 79-100 3-24 (86)
69 3u2b_C Transcription factor SO 79.6 1.4 4.8E-05 27.3 2.8 21 79-99 3-23 (79)
70 2rms_B MSIN3A-binding protein; 75.5 8.9 0.00031 22.8 5.2 18 101-118 19-36 (61)
71 2yua_A Williams-beuren syndrom 74.8 6.4 0.00022 25.5 5.1 42 8-49 35-81 (99)
72 1l8y_A Upstream binding factor 74.5 2.6 8.8E-05 27.6 3.0 24 77-100 3-26 (91)
73 2o37_A Protein SIS1; HSP40, J- 66.9 9.8 0.00034 24.2 4.6 42 8-49 26-69 (92)
74 1hdj_A Human HSP40, HDJ-1; mol 66.7 12 0.00042 22.7 4.8 41 8-48 21-65 (77)
75 2och_A Hypothetical protein DN 65.2 11 0.00039 22.7 4.5 41 8-48 26-68 (73)
76 2dn9_A DNAJ homolog subfamily 63.6 9.1 0.00031 23.4 3.8 38 8-45 25-67 (79)
77 2ctw_A DNAJ homolog subfamily 62.6 12 0.00041 24.6 4.5 42 8-49 35-81 (109)
78 1v63_A Nucleolar transcription 61.5 5.4 0.00019 26.1 2.5 20 76-95 6-25 (101)
79 2dmx_A DNAJ homolog subfamily 56.2 13 0.00045 23.5 3.7 37 8-44 27-69 (92)
80 2cug_A Mkiaa0962 protein; DNAJ 55.9 14 0.00049 23.1 3.8 38 8-45 35-76 (88)
81 3u85_B Histone-lysine N-methyl 55.5 6 0.0002 18.6 1.4 13 131-143 6-18 (21)
82 2ctp_A DNAJ homolog subfamily 55.5 14 0.00049 22.4 3.7 38 8-45 25-66 (78)
83 2ctr_A DNAJ homolog subfamily 55.4 13 0.00043 23.4 3.5 39 8-46 25-67 (88)
84 2ctq_A DNAJ homolog subfamily 54.7 18 0.00061 23.8 4.3 42 8-49 38-84 (112)
85 2ej7_A HCG3 gene; HCG3 protein 49.6 15 0.00052 22.5 3.1 38 8-45 27-70 (82)
86 2lgw_A DNAJ homolog subfamily 48.8 18 0.0006 23.4 3.4 42 8-49 20-67 (99)
87 2ys8_A RAB-related GTP-binding 38.8 32 0.0011 21.6 3.4 35 9-43 46-84 (90)
88 2l6l_A DNAJ homolog subfamily 37.9 84 0.0029 21.6 5.9 41 8-48 28-79 (155)
89 1bq0_A DNAJ, HSP40; chaperone, 36.1 12 0.0004 24.3 1.0 35 9-43 22-61 (103)
90 1wjz_A 1700030A21RIK protein; 35.5 15 0.00052 23.1 1.4 36 9-44 35-81 (94)
91 2qsa_A DNAJ homolog DNJ-2; J-d 35.0 26 0.00088 22.8 2.5 37 8-44 34-78 (109)
92 3o39_A Periplasmic protein rel 33.7 47 0.0016 22.0 3.7 26 26-51 79-104 (108)
93 3nm8_A Tyrosinase; TYPE3 coppe 33.0 29 0.001 27.3 3.0 23 33-55 9-31 (303)
94 3mab_A Uncharacterized protein 32.6 81 0.0028 20.3 4.6 46 11-56 39-88 (93)
95 3itf_A Periplasmic adaptor pro 27.9 73 0.0025 22.2 4.1 31 27-57 108-138 (145)
96 3apq_A DNAJ homolog subfamily 27.4 64 0.0022 22.8 3.8 41 8-48 20-65 (210)
97 1b0n_A Protein (SINR protein); 27.3 72 0.0025 19.8 3.7 32 25-56 76-108 (111)
98 2l02_A Uncharacterized protein 26.8 30 0.001 22.1 1.7 31 23-53 2-32 (82)
99 2l01_A Uncharacterized protein 25.4 33 0.0011 21.6 1.6 32 22-53 3-34 (77)
100 3awu_A Tyrosinase; tyrosinase, 22.8 54 0.0019 25.3 2.8 23 33-55 5-27 (281)
No 1
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.93 E-value=1.5e-26 Score=153.07 Aligned_cols=72 Identities=85% Similarity=1.378 Sum_probs=63.4
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 72 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr 72 (146)
|||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.++||+|+|+|++++
T Consensus 9 ~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~~~ 80 (81)
T 1i11_A 9 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 80 (81)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--------
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999998875
No 2
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.93 E-value=4.8e-26 Score=151.14 Aligned_cols=72 Identities=56% Similarity=1.091 Sum_probs=69.2
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 72 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr 72 (146)
|||||||++++|..|+.+||+++++||+++||++|++|+++||++|+++|++++++|.++||+|+|+|++++
T Consensus 11 ~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~kk 82 (83)
T 3f27_D 11 MNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 82 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC--
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCccCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999875
No 3
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.93 E-value=5.3e-26 Score=149.52 Aligned_cols=72 Identities=56% Similarity=1.006 Sum_probs=69.1
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 72 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr 72 (146)
|||||||++++|.+|+.++|++++.||+++||++|++|+++||++|+++|++++++|.+++|+|+|+|+++.
T Consensus 7 ~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk~~ 78 (79)
T 3u2b_C 7 MNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKV 78 (79)
T ss_dssp CCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC--
T ss_pred CCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999998764
No 4
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.93 E-value=1.6e-25 Score=149.51 Aligned_cols=73 Identities=51% Similarity=0.962 Sum_probs=70.9
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCCc
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKRT 73 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr~ 73 (146)
+||||||++++|..|+.+||++++.||+++||++|++|+++||++|+++|+.++++|.++||+|+|+|+++.+
T Consensus 9 ~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr~~~ 81 (85)
T 1j46_A 9 MNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAK 81 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999988764
No 5
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.93 E-value=1.3e-25 Score=148.15 Aligned_cols=73 Identities=58% Similarity=1.068 Sum_probs=70.8
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCCc
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKRT 73 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr~ 73 (146)
|||||||++++|..|+.+||++++.||+++||++|++|+++||++|+++|+.++++|.++||+|+|+|+++++
T Consensus 7 ~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~~k 79 (80)
T 1gt0_D 7 MNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK 79 (80)
T ss_dssp CCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999988753
No 6
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.93 E-value=2.9e-25 Score=148.55 Aligned_cols=72 Identities=32% Similarity=0.596 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 72 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr 72 (146)
|||||||++++|..|+.+||+++++||+++||++|++|+++||++|+++|+.++++|.++||+|+|+|+.++
T Consensus 7 ~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~~ 78 (86)
T 2lef_A 7 LNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGK 78 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTTT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999998654
No 7
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.92 E-value=4.4e-25 Score=153.34 Aligned_cols=72 Identities=47% Similarity=0.972 Sum_probs=65.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 72 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr 72 (146)
|||||||++++|++|+.++|++++.||+++||++|++|+++||++|+++|++++++|.+++|+|+|+|++++
T Consensus 34 ~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~PrrkK 105 (106)
T 4euw_A 34 MNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK 105 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC------
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999875
No 8
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.92 E-value=6.5e-25 Score=143.40 Aligned_cols=68 Identities=51% Similarity=1.001 Sum_probs=66.3
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRP 68 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p 68 (146)
|||||||++++|..|+.+||+++++||+++||++|++|+++||++|+++|+.++++|.++||+|+|+|
T Consensus 9 ~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 76 (76)
T 1hry_A 9 MNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred CCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999987
No 9
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.92 E-value=3.1e-24 Score=157.98 Aligned_cols=100 Identities=37% Similarity=0.657 Sum_probs=93.1
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCCCC--cccCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR--TCIVDG 78 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~kr--~~~~~~ 78 (146)
+||||||+++.|.+|+.+||++++.||+++||++|++|+++||++|+++|+.++++|.+++++|++.+++++ .++.+.
T Consensus 9 ~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~~kk~~kdp~~ 88 (159)
T 2gzk_A 9 MNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKKKFKDPNA 88 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCCCGGGSCCTTC
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999887543 356778
Q ss_pred CccCcchhHHHHHHHHHHHHHH
Q psy12430 79 KKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 79 ~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+|+|.++|++||.+.|..+...
T Consensus 89 pKrp~say~lf~~~~r~~~~~~ 110 (159)
T 2gzk_A 89 PKRPPSAFFLFCSEYRPKIKGE 110 (159)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHhhHHHHHHh
Confidence 9999999999999999988753
No 10
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.91 E-value=1.2e-24 Score=144.23 Aligned_cols=70 Identities=30% Similarity=0.574 Sum_probs=68.7
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRP 70 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~ 70 (146)
|||||||++++|..|+.+||++++.||+++||++|++|+++||++|+++|+.++++|.++||+|+|+|++
T Consensus 12 ~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p~~ 81 (82)
T 1wz6_A 12 MNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPSS 81 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCTTC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999976
No 11
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.90 E-value=6.3e-24 Score=142.42 Aligned_cols=66 Identities=39% Similarity=0.575 Sum_probs=65.1
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 66 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~ 66 (146)
|||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.++||+|+|
T Consensus 22 ~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yky 87 (87)
T 2e6o_A 22 MNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK 87 (87)
T ss_dssp CCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999997
No 12
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=8.4e-23 Score=152.37 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=90.2
Q ss_pred CchhHHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCC--CCCcccC
Q psy12430 1 MNAFMVWAKDERRKILKACPD--MHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPR--PKRTCIV 76 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~--~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~--~kr~~~~ 76 (146)
|||||||++++|..|+.+||+ +++.||+++||++|++|+++||++|+++|+.++++|.+++++|..... +++.++.
T Consensus 20 ~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~~kk~~kdp 99 (173)
T 2yrq_A 20 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDP 99 (173)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCCCCCCSSCSCCCS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Confidence 799999999999999999999 699999999999999999999999999999999999999999975322 2334577
Q ss_pred CCCccCcchhHHHHHHHHHHHHHH
Q psy12430 77 DGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 77 ~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+.+++|.++|++||.+.|..+...
T Consensus 100 ~~pKrP~saf~lf~~~~r~~~~~~ 123 (173)
T 2yrq_A 100 NAPKRPPSAFFLFCSEYRPKIKGE 123 (173)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccCcccHHHHHHHHHHHHHHHH
Confidence 889999999999999999988654
No 13
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.88 E-value=5.6e-23 Score=132.24 Aligned_cols=65 Identities=55% Similarity=1.059 Sum_probs=61.4
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|||||||++++|..|+.++|++++.||+++||++|++|+++||++|+++|+.++++|.+++|+|+
T Consensus 7 ~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 7 MNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 79999999999999999999999999999999999999999999999999999999999999995
No 14
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.87 E-value=2e-22 Score=138.32 Aligned_cols=71 Identities=24% Similarity=0.449 Sum_probs=66.7
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHH-------HHHhCCCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKL-------HMEKHPDYRYRPRPK 71 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~-------~~~~~p~Yk~~p~~k 71 (146)
|||||||++++|.+|+.+||+++++||+++||++|++|+++||++|+++|++++++ |.+.+|+|+|+|++-
T Consensus 15 ~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~~P~~~~~~~~~ 92 (99)
T 1k99_A 15 LTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKL 92 (99)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCCCCCSCCCCC-
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCccc
Confidence 79999999999999999999999999999999999999999999999999999999 667799999988753
No 15
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.86 E-value=9.1e-22 Score=128.66 Aligned_cols=66 Identities=26% Similarity=0.491 Sum_probs=64.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 66 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~ 66 (146)
+||||||++++|..|+.+||++++.||+++||++|++|+++||++|+++|+.++++|.+++++|+.
T Consensus 11 ~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 11 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999999999999999999999999999999999999999974
No 16
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.86 E-value=2.4e-22 Score=135.94 Aligned_cols=69 Identities=25% Similarity=0.484 Sum_probs=66.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPR 69 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~ 69 (146)
|||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.++|++|++.+.
T Consensus 12 ~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 80 (92)
T 2crj_A 12 VTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEA 80 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 799999999999999999999999999999999999999999999999999999999999999987654
No 17
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.1e-22 Score=133.67 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=66.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPR 69 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~ 69 (146)
|||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.+++++|+.+..
T Consensus 12 ~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 12 MSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 799999999999999999999999999999999999999999999999999999999999999987643
No 18
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.85 E-value=1.1e-22 Score=156.81 Aligned_cols=97 Identities=15% Similarity=0.345 Sum_probs=86.2
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC--CCC---------
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY--RPR--------- 69 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~--~p~--------- 69 (146)
|||||||++++|.+|+.+||+++++||+++||++|++|+++||++|+++|+.++++|.++++.|.- .|.
T Consensus 14 ~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~q~~~~~~~~ 93 (214)
T 3tq6_A 14 VSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEI 93 (214)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999942 221
Q ss_pred ------------CCCcccCCCCccCcchhHHHHHHHHHHH
Q psy12430 70 ------------PKRTCIVDGKKMRISEYKTLMRQRRNEM 97 (146)
Q Consensus 70 ------------~kr~~~~~~~k~~~s~~~~~~~~~r~~~ 97 (146)
++..++.+.+|+|.++|++||++.|..+
T Consensus 94 ~~~~~krk~~kkkk~~kdp~~PKrP~say~lF~~e~r~~~ 133 (214)
T 3tq6_A 94 MDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEA 133 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTS
T ss_pred HHHHhhhcchhhhhhhccccCcccccchhhhhHHHHHHhh
Confidence 1112467889999999999999998755
No 19
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.85 E-value=2.3e-21 Score=124.78 Aligned_cols=64 Identities=25% Similarity=0.339 Sum_probs=62.0
Q ss_pred CchhHHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHN--SNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 64 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~--~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Y 64 (146)
|||||||++++|..|+.+||++++ .||+++||++|++|+++||++|+++|+.++++|.++++.|
T Consensus 6 ~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 6 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 799999999999999999999875 9999999999999999999999999999999999999987
No 20
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=5.1e-22 Score=136.83 Aligned_cols=70 Identities=20% Similarity=0.382 Sum_probs=67.1
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRP 70 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~p~~ 70 (146)
|||||||++++|..|+.+||++++.||+++||++|++|+++||++|+++|+.++++|.++|++|++.+..
T Consensus 22 ~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~ 91 (102)
T 2co9_A 22 VSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVS 91 (102)
T ss_dssp CCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999876543
No 21
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.84 E-value=1.8e-22 Score=157.94 Aligned_cols=97 Identities=15% Similarity=0.345 Sum_probs=86.0
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC--CCC---------
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY--RPR--------- 69 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~--~p~--------- 69 (146)
|||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|+.++++|.++++.|.- .|.
T Consensus 46 ~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~p~~~~~~~~~~ 125 (238)
T 3tmm_A 46 VSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEI 125 (238)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999942 221
Q ss_pred ------------CCCcccCCCCccCcchhHHHHHHHHHHH
Q psy12430 70 ------------PKRTCIVDGKKMRISEYKTLMRQRRNEM 97 (146)
Q Consensus 70 ------------~kr~~~~~~~k~~~s~~~~~~~~~r~~~ 97 (146)
++..++.+.+|+|.++|++||++.|..+
T Consensus 126 ~~k~~krk~~~kkk~~kdp~~PKrP~say~lF~~e~r~~~ 165 (238)
T 3tmm_A 126 MDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEA 165 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTS
T ss_pred hhhhhhhhcccchhhhcccCCCCCCCcHHHHHHHHHHHHH
Confidence 1112457889999999999999998655
No 22
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.84 E-value=4.8e-21 Score=124.24 Aligned_cols=64 Identities=23% Similarity=0.499 Sum_probs=62.2
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 66 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~ 66 (146)
|||||||++++|.+|+.+||++++.||+++||++|++| +||++|+++|+.++++|.+++++|+-
T Consensus 8 ~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~ 71 (73)
T 1wxl_A 8 TTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKP 71 (73)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999 89999999999999999999999963
No 23
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.83 E-value=5.1e-21 Score=126.93 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=63.3
Q ss_pred CchhHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMH--NSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 66 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~--~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~ 66 (146)
|||||||++++|..|+.+||+++ +.||+++||++|++|+++||++|+++|+.++++|.++|++|+-
T Consensus 12 ~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 79 (83)
T 1aab_A 12 MSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 79 (83)
T ss_dssp CCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999986 5999999999999999999999999999999999999999963
No 24
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.3e-21 Score=127.77 Aligned_cols=65 Identities=26% Similarity=0.346 Sum_probs=62.4
Q ss_pred CchhHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMH--NSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~--~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|||||||++++|.+|+.+||+++ +.||+++||++|++|+++||++|+++|+.++++|.++|++|+
T Consensus 20 ~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 20 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999999986 599999999999999999999999999999999999998884
No 25
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.83 E-value=3.6e-21 Score=124.86 Aligned_cols=63 Identities=17% Similarity=0.432 Sum_probs=61.3
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|||||||++++|.+|+.+||++++.||+++||++|++|++ |++|+++|++++++|.+++++|+
T Consensus 8 ~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~ 70 (73)
T 3nm9_A 8 LSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFE 70 (73)
T ss_dssp CCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999997 99999999999999999999985
No 26
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=1.1e-20 Score=127.40 Aligned_cols=64 Identities=19% Similarity=0.481 Sum_probs=61.7
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 64 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Y 64 (146)
|||||||++++|..|+.+||++++.||+++||++|++|+++||++|+++|+.++++|.++|..+
T Consensus 25 ~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~~ 88 (90)
T 1wgf_A 25 VSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88 (90)
T ss_dssp CCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSSC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999888765
No 27
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.79 E-value=5.4e-21 Score=130.46 Aligned_cols=65 Identities=28% Similarity=0.580 Sum_probs=63.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMH--NSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~--~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|||||||++++|..|+.+||+++ +.||+++||++|++|+++||++|+++|+.++++|.+++++|+
T Consensus 27 ~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y~ 93 (97)
T 2lhj_A 27 LSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEYA 93 (97)
T ss_dssp CCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999 999999999999999999999999999999999999999985
No 28
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.2e-20 Score=121.71 Aligned_cols=63 Identities=19% Similarity=0.387 Sum_probs=56.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMH-NSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 66 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~-~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~ 66 (146)
|||||||++++|.+|+.+||+++ +.||+|+||++|++|+++||++|+++|+.+. ..++++|+.
T Consensus 10 ~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~---~~~~~e~kk 73 (81)
T 2d7l_A 10 KTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET---ASEGTEAKK 73 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS---SSSCCCCGG
T ss_pred CCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hhhhhhhhh
Confidence 79999999999999999999998 9999999999999999999999999999884 234555554
No 29
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.78 E-value=5.2e-21 Score=129.69 Aligned_cols=65 Identities=29% Similarity=0.526 Sum_probs=63.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|||||||++++|..|+.+||++++.||+++||++|++|+++||++|+++|+.++++|.+++++|+
T Consensus 25 ~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 25 LSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999985
No 30
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.77 E-value=5.7e-19 Score=119.26 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=63.0
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 66 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~ 66 (146)
++||+||++++|..++.++|+ +++||+|+||++|++|+++||++|+++|+.++++|.+++..|+.
T Consensus 9 ~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~ 73 (91)
T 1l8y_A 9 KRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA 73 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 589999999999999999999 99999999999999999999999999999999999999999964
No 31
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=114.21 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=56.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 64 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Y 64 (146)
|||||||++++|..|+.++| +||+++||++|++|+++||++|+++|++++++|.+++..|
T Consensus 7 ~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 7 RSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999987665 7999999999999999999999999999999999998877
No 32
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-19 Score=131.73 Aligned_cols=66 Identities=26% Similarity=0.491 Sum_probs=64.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 66 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~ 66 (146)
|||||||++++|..|+.+||++++.||+++||++|++|+++||++|+++|+.++++|.++|++|++
T Consensus 106 ~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 106 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999999999999999975
No 33
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.74 E-value=1.1e-18 Score=128.12 Aligned_cols=65 Identities=26% Similarity=0.510 Sum_probs=63.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
+||||||++++|..|+.+||+++++||+++||++|++|+++||++|+++|++++++|.+++++|+
T Consensus 93 ~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 157 (159)
T 2gzk_A 93 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 157 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999985
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.73 E-value=1.9e-18 Score=118.87 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=57.7
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|||||||+++++. ..+++++++.||+|+||++|++|+++||++|+++|++++++|.++|++|+
T Consensus 13 ~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 75 (101)
T 1v63_A 13 MNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWV 75 (101)
T ss_dssp SSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999975 33456688999999999999999999999999999999999999999995
No 35
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-18 Score=116.69 Aligned_cols=60 Identities=12% Similarity=0.299 Sum_probs=57.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHH---HHHHhcCChhhhhhhHHHHHHHHHHHHHhCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKIL---GARWKAMSNAEKQPYYEEQSRLSKLHMEKHP 62 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~l---g~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p 62 (146)
|||||||++++|.+|+.+ ++++.||+++| |++|++|+++||++|+++|++++++|.++..
T Consensus 15 ~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 15 RNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 799999999999999998 79999999999 9999999999999999999999999998864
No 36
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.72 E-value=2.3e-18 Score=119.80 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=59.0
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 65 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 65 (146)
|||||||++++|.+|+ ++++.||+++||++|++|+++||++|+++|+.++++|.+++++|+
T Consensus 22 ~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 22 PNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp SSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999987 799999999999999999999999999999999999999999996
No 37
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=112.15 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=53.9
Q ss_pred CchhHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHh
Q psy12430 1 MNAFMVWAKDERRKILKACPDMH--NSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~--~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~ 60 (146)
||||||||+++|.+|+.+||+++ +.||+ ++|++|+++||++|+++|++++++|+.+
T Consensus 27 ~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 27 TVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp SSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999 99998 9999999999999999999999999864
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.52 E-value=1.1e-15 Score=117.70 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=57.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 66 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~ 66 (146)
+|||||||+++|.+|+.++| .||+++||++|++|+++||++|+++|++++++|.+++++|+.
T Consensus 119 ~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 119 RSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp CCHHHHHHHHHTTTSSCSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHhhccCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999876554 599999999999999999999999999999999999999965
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.51 E-value=1.2e-15 Score=119.05 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=58.1
Q ss_pred CchhHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHhCCCCCCC
Q psy12430 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYR 67 (146)
Q Consensus 1 mnay~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~~~~~p~Yk~~ 67 (146)
+|||||||+++|.+|+.++| .||+++||++|++|+++||++|+++|++++++|.+++++|+..
T Consensus 151 ~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 151 RSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp CCHHHHHHHHHTTTSCCSSH----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999876554 5999999999999999999999999999999999999999653
No 40
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=95.83 E-value=0.0079 Score=40.15 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.6
Q ss_pred CCCcccCCCCccCcchhHHHHHHHHHHHHH
Q psy12430 70 PKRTCIVDGKKMRISEYKTLMRQRRNEMRQ 99 (146)
Q Consensus 70 ~kr~~~~~~~k~~~s~~~~~~~~~r~~~~~ 99 (146)
++++++++.+|+|.++|++||++.|..+.+
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~ 31 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAK 31 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 556678899999999999999999999865
No 41
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.48 E-value=0.015 Score=37.58 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=27.1
Q ss_pred CCCCcccCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 69 RPKRTCIVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 69 ~~kr~~~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+++++++++.+|+|.++|++|+++.|..+.+.
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~ 37 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKK 37 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 34456788899999999999999999998764
No 42
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.35 E-value=0.016 Score=37.78 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=25.1
Q ss_pred CcccCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 72 RTCIVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 72 r~~~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
++++.+.+|+|.++|++||++.|..+.+.
T Consensus 14 ~~kdp~~pKrP~say~lF~~~~r~~~k~~ 42 (90)
T 1wgf_A 14 GKGGSEKPKRPVSAMFIFSEEKRRQLQEE 42 (90)
T ss_dssp CSSCCCCCCCCCCHHHHHHHHTHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999998764
No 43
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.32 E-value=0.019 Score=38.42 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCCcccCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 70 PKRTCIVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 70 ~kr~~~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
++++++.+.+|+|.++|++|+++.|..|.+.
T Consensus 9 kk~~kdp~~pKrP~say~lF~~~~r~~i~~~ 39 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQ 39 (102)
T ss_dssp CSSCCCCCSCCCCCCHHHHTHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3445688899999999999999999998764
No 44
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=93.95 E-value=0.052 Score=35.05 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=25.8
Q ss_pred CCcccCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 71 KRTCIVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 71 kr~~~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
++.++.+.+|+|.++|++|+++.|..+...
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~ 39 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQM 39 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455678889999999999999999988764
No 45
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=93.45 E-value=0.048 Score=34.77 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.2
Q ss_pred ccCCCCccCcchhHHHHHHHHHHHHH
Q psy12430 74 CIVDGKKMRISEYKTLMRQRRNEMRQ 99 (146)
Q Consensus 74 ~~~~~~k~~~s~~~~~~~~~r~~~~~ 99 (146)
++++.+|+|.++|++|+++.|..+..
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~ 28 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKK 28 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56788999999999999999999854
No 46
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=93.38 E-value=0.069 Score=33.43 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=23.8
Q ss_pred ccCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 74 CIVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 74 ~~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
++++.+++|.++|++|+.+.|..+...
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~ 28 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGE 28 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 567889999999999999999988764
No 47
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=93.13 E-value=0.061 Score=36.38 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=24.0
Q ss_pred CCCcccCCCC-ccCcchhHHHHHHHHHHHH
Q psy12430 70 PKRTCIVDGK-KMRISEYKTLMRQRRNEMR 98 (146)
Q Consensus 70 ~kr~~~~~~~-k~~~s~~~~~~~~~r~~~~ 98 (146)
.++.++.+.+ |+|.++|++||++.|..+.
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k 37 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK 37 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 3455677888 9999999999999998764
No 48
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=92.99 E-value=0.041 Score=36.29 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=25.0
Q ss_pred CcccCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 72 RTCIVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 72 r~~~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+.++.+.+++|.++|++|+.+.|..+...
T Consensus 16 ~~kdp~~pKrP~say~lF~~~~r~~~k~~ 44 (97)
T 2lhj_A 16 AKKDPNAPKRALSSYMFFAKEKRVEIIAE 44 (97)
T ss_dssp TTSCCCCCCCCCCSSTHHHHGGGGGHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999988764
No 49
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=92.61 E-value=0.097 Score=32.50 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCCccCcchhHHHHHHHHHHHHHH
Q psy12430 77 DGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 77 ~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+.+|+|.++|++||++.|..+...
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~ 25 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRE 25 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHH
Confidence 568999999999999999988764
No 50
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=92.31 E-value=0.053 Score=35.48 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.6
Q ss_pred cccCCCCccCcchhHHHHHHHHHHHH
Q psy12430 73 TCIVDGKKMRISEYKTLMRQRRNEMR 98 (146)
Q Consensus 73 ~~~~~~~k~~~s~~~~~~~~~r~~~~ 98 (146)
.++.+.+++|.++|++|+.+.|..+.
T Consensus 15 ~kdp~~pKrP~saf~lF~~~~r~~~~ 40 (93)
T 1cg7_A 15 KKDPNAPKRALSAYMFFANENRDIVR 40 (93)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 45778899999999999999998774
No 51
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=92.24 E-value=0.13 Score=33.50 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=23.7
Q ss_pred ccCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 74 CIVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 74 ~~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
++++.+|+|.++|++|+++.|..+.+.
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~ 29 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTR 29 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 467789999999999999999998764
No 52
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.00 E-value=0.0093 Score=39.50 Aligned_cols=27 Identities=4% Similarity=-0.170 Sum_probs=24.0
Q ss_pred cccCCCCccCcchhHHHHHHHHHHHHH
Q psy12430 73 TCIVDGKKMRISEYKTLMRQRRNEMRQ 99 (146)
Q Consensus 73 ~~~~~~~k~~~s~~~~~~~~~r~~~~~ 99 (146)
+++++.+|++.++|++||++.|..|..
T Consensus 17 ~kDpnaPKRp~sAf~lf~~e~R~kik~ 43 (90)
T 2yuk_A 17 EKEEALGEMATVAPVLYTNINFPNLKE 43 (90)
T ss_dssp HHHHHHGGGCSSSHHHHHHHHCTTHHH
T ss_pred cCCCCCCCCCccHHHHHHHHhHHHHHH
Confidence 467788999999999999999998876
No 53
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.89 E-value=0.15 Score=32.65 Aligned_cols=25 Identities=4% Similarity=0.109 Sum_probs=22.2
Q ss_pred CCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 76 VDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 76 ~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
.+.+|+|.++|++||++.|..|...
T Consensus 3 ~~~PKRP~say~lF~~e~R~~ik~~ 27 (81)
T 2d7l_A 3 SGSSGRPKTGFQMWLEENRSNILSD 27 (81)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998764
No 54
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=91.33 E-value=0.18 Score=31.27 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=21.3
Q ss_pred CCCccCcchhHHHHHHHHHHHHHH
Q psy12430 77 DGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 77 ~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+.+|+|.++|++|+++.|..+...
T Consensus 2 ~~pKrP~say~lf~~~~r~~~~~~ 25 (73)
T 1wxl_A 2 HMPKRATTAFMLWLNDTRESIKRE 25 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHH
Confidence 568999999999999999998764
No 55
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=90.69 E-value=0.21 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 76 VDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 76 ~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
++.+|+|.++|++|+++.|..+...
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~ 26 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALE 26 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998764
No 56
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.65 E-value=0.17 Score=33.39 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.5
Q ss_pred ccCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 74 CIVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 74 ~~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
...+.+|++.++|++||++.|..+...
T Consensus 6 ~~~~~PKRP~sAf~lF~~e~R~~ik~e 32 (93)
T 2cto_A 6 SGMPNRKASRNAYYFFVQEKIPELRRR 32 (93)
T ss_dssp CCCCCCCSSCCHHHHHHHTTHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 456788999999999999999998764
No 57
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.70 E-value=0.31 Score=31.57 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.5
Q ss_pred cCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 75 IVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 75 ~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
..+.+|+|.++|++|+++.|..+...
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~ 29 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIE 29 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999988764
No 58
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=89.37 E-value=0.27 Score=29.82 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.8
Q ss_pred CCccCcchhHHHHHHHHHHHH
Q psy12430 78 GKKMRISEYKTLMRQRRNEMR 98 (146)
Q Consensus 78 ~~k~~~s~~~~~~~~~r~~~~ 98 (146)
.+|+|.++|+.|+++.|..+.
T Consensus 2 ~PKrP~say~~F~~~~r~~~k 22 (67)
T 3fgh_A 2 KPKRPRSAYNVYVAERFQEAK 22 (67)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999874
No 59
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=88.87 E-value=0.33 Score=29.62 Aligned_cols=23 Identities=17% Similarity=0.337 Sum_probs=20.1
Q ss_pred CCccCcchhHHHHHHHHHHHHHH
Q psy12430 78 GKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 78 ~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
.+|+|.++|+.|+++.|..+...
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~ 23 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKK 23 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHH
Confidence 36889999999999999998764
No 60
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=88.73 E-value=0.42 Score=30.12 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=22.4
Q ss_pred cCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 75 IVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 75 ~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
..+.+|+|.++|++|+++.|..+.+.
T Consensus 4 ~~~~pkrP~~af~lf~~~~r~~~~~~ 29 (82)
T 1wz6_A 4 GSSGARRPMNAFLLFCKRHRSLVRQE 29 (82)
T ss_dssp SCCCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999988764
No 61
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=88.60 E-value=0.34 Score=32.35 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=21.6
Q ss_pred cccCCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 73 TCIVDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 73 ~~~~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
.++.+.+|+|.++|++|+++.|..+...
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~ 51 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQ 51 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999988764
No 62
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=88.55 E-value=0.41 Score=30.49 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.7
Q ss_pred CCCCccCcchhHHHHHHHHHHHHHH
Q psy12430 76 VDGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 76 ~~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
++.+++|.++|++|+.+.|..+...
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~ 26 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALE 26 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4668999999999999999998764
No 63
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=85.91 E-value=0.57 Score=29.41 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=20.3
Q ss_pred CCCccCcchhHHHHHHHHHHHHH
Q psy12430 77 DGKKMRISEYKTLMRQRRNEMRQ 99 (146)
Q Consensus 77 ~~~k~~~s~~~~~~~~~r~~~~~ 99 (146)
+.+|+|.++|++|+++.|..+.+
T Consensus 3 ~~pkRP~naf~lf~~~~r~~~~~ 25 (81)
T 1i11_A 3 PHIKRPMNAFMVWAKDERRKILQ 25 (81)
T ss_dssp CCSCCSCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH
Confidence 56789999999999999998864
No 64
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=85.81 E-value=0.57 Score=29.30 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.5
Q ss_pred CCccCcchhHHHHHHHHHHHHH
Q psy12430 78 GKKMRISEYKTLMRQRRNEMRQ 99 (146)
Q Consensus 78 ~~k~~~s~~~~~~~~~r~~~~~ 99 (146)
.+++|.++|++|+.+.|..+.+
T Consensus 2 ~pkrP~~af~lf~~~~r~~~~~ 23 (80)
T 1gt0_D 2 RVKRPMNAFMVWSRGQRRKMAQ 23 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 5788999999999999998864
No 65
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=84.99 E-value=0.88 Score=34.07 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=37.3
Q ss_pred CCCCChhHHHHH-HHHHHhcCChhhhhhhHHHHHHHH-HHHHHhCCCCC
Q psy12430 19 CPDMHNSNISKI-LGARWKAMSNAEKQPYYEEQSRLS-KLHMEKHPDYR 65 (146)
Q Consensus 19 ~P~~~~~eisk~-lg~~Wk~Ls~eeK~~y~~~A~~~k-~~~~~~~p~Yk 65 (146)
.|-.++..|++. ||.-|+.+|+++|+.|.+.-...- .-|...+..|.
T Consensus 69 ~p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~ 117 (211)
T 2qgu_A 69 VPRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVR 117 (211)
T ss_dssp GGGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 355688888765 589999999999999998776644 45888777774
No 66
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=84.47 E-value=0.72 Score=28.98 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=19.6
Q ss_pred CCCccCcchhHHHHHHHHHHHHHH
Q psy12430 77 DGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 77 ~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
..+|+|.++|++||++.|..+...
T Consensus 5 ~~pKrP~~af~lf~~~~r~~~~~~ 28 (83)
T 3f27_D 5 SRIRRPMNAFMVWAKDERKRLAQQ 28 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999988754
No 67
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=82.44 E-value=0.78 Score=27.77 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=17.3
Q ss_pred CccCcchhHHHHHHHHHHHHH
Q psy12430 79 KKMRISEYKTLMRQRRNEMRQ 99 (146)
Q Consensus 79 ~k~~~s~~~~~~~~~r~~~~~ 99 (146)
.|+|.++|++|+++.|..+..
T Consensus 3 ~krP~~af~lf~~~~r~~~~~ 23 (71)
T 4a3n_A 3 IRRPMNAFMVWAKDERKRLAQ 23 (71)
T ss_dssp --CCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999998864
No 68
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=80.83 E-value=1.2 Score=28.24 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.5
Q ss_pred CccCcchhHHHHHHHHHHHHHH
Q psy12430 79 KKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 79 ~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+++|.++|++|+++.|..+.+.
T Consensus 3 pKRP~naf~lf~~~~r~~~~~~ 24 (86)
T 2lef_A 3 IKKPLNAFMLYMKEMRANVVAE 24 (86)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 6789999999999999988764
No 69
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=79.64 E-value=1.4 Score=27.26 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=18.7
Q ss_pred CccCcchhHHHHHHHHHHHHH
Q psy12430 79 KKMRISEYKTLMRQRRNEMRQ 99 (146)
Q Consensus 79 ~k~~~s~~~~~~~~~r~~~~~ 99 (146)
.|+|.++|++|+++.|..+.+
T Consensus 3 iKRP~naf~lf~~~~r~~~~~ 23 (79)
T 3u2b_C 3 IKRPMNAFMVWSQIERRKIME 23 (79)
T ss_dssp CCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999998864
No 70
>2rms_B MSIN3A-binding protein; protein/protein interaction, PAH domain, SIN3 corepressor, transcription repression, transcription regulation; NMR {Mus musculus}
Probab=75.50 E-value=8.9 Score=22.78 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=9.4
Q ss_pred hhcCCCCCCCCCCCCCCC
Q psy12430 101 WCRGEAGPSGSGGPAFPF 118 (146)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~ 118 (146)
+.+|..-++++..+..+.
T Consensus 19 MSQGeprP~ss~a~~p~~ 36 (61)
T 2rms_B 19 MSQGEQTPNCVASSLPST 36 (61)
T ss_dssp HTTTTSSSSSCCCTTTSS
T ss_pred HhcCCCCCcccCCCCCCC
Confidence 455666666555444333
No 71
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.79 E-value=6.4 Score=25.48 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|..++.-||+... .+..+.|.+.|..|++.++..-++.
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 81 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDR 81 (99)
T ss_dssp HHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 45678888888999763 5788999999999988876554443
No 72
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=74.51 E-value=2.6 Score=27.63 Aligned_cols=24 Identities=0% Similarity=-0.220 Sum_probs=20.6
Q ss_pred CCCccCcchhHHHHHHHHHHHHHH
Q psy12430 77 DGKKMRISEYKTLMRQRRNEMRQL 100 (146)
Q Consensus 77 ~~~k~~~s~~~~~~~~~r~~~~~~ 100 (146)
+.+++|.++|+.|+++.|..+...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~ 26 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLAR 26 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 568899999999999999887664
No 73
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=66.90 E-value=9.8 Score=24.20 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMH--NSNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~--~~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..-++.
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 69 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3567788888899864 56788899999999988776554443
No 74
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=66.66 E-value=12 Score=22.74 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhhhHH
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQPYYE 48 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~y~~ 48 (146)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..-++
T Consensus 21 k~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 65 (77)
T 1hdj_A 21 KRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65 (77)
T ss_dssp HHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3567777888899864 4678899999999998877654433
No 75
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=65.25 E-value=11 Score=22.66 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCh--hHHHHHHHHHHhcCChhhhhhhHH
Q psy12430 8 AKDERRKILKACPDMHN--SNISKILGARWKAMSNAEKQPYYE 48 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~--~eisk~lg~~Wk~Ls~eeK~~y~~ 48 (146)
.+.+|..++.-||+... .+..+.|.+.|..|++.++..-++
T Consensus 26 k~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (73)
T 2och_A 26 KKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68 (73)
T ss_dssp HHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 35677778888998654 478889999999998776654333
No 76
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.62 E-value=9.1 Score=23.42 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhh
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQP 45 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~ 45 (146)
.+.+|..++.-||+... .+..+.|.+.|..|++.++..
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 35677888888998654 467888999999987766543
No 77
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=62.55 E-value=12 Score=24.62 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|..++.-||+... .+..+.|.+.|..|++.++..-++.
T Consensus 35 k~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~ 81 (109)
T 2ctw_A 35 KKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDK 81 (109)
T ss_dssp HHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 35678888888999764 4678899999999988777665554
No 78
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=61.51 E-value=5.4 Score=26.12 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=16.6
Q ss_pred CCCCccCcchhHHHHHHHHH
Q psy12430 76 VDGKKMRISEYKTLMRQRRN 95 (146)
Q Consensus 76 ~~~~k~~~s~~~~~~~~~r~ 95 (146)
...+|+|.++|++||++.+.
T Consensus 6 ~~~PKrP~say~lF~~e~~~ 25 (101)
T 1v63_A 6 SGPKKPPMNGYQKFSQELLS 25 (101)
T ss_dssp CSSCCCCSSSHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHh
Confidence 45678899999999999853
No 79
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.22 E-value=13 Score=23.46 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCh------hHHHHHHHHHHhcCChhhhh
Q psy12430 8 AKDERRKILKACPDMHN------SNISKILGARWKAMSNAEKQ 44 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~------~eisk~lg~~Wk~Ls~eeK~ 44 (146)
.+.+|..++.-||+... .+..+.|.+.|..|++.++.
T Consensus 27 k~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 69 (92)
T 2dmx_A 27 KKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69 (92)
T ss_dssp HHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 35677888888998653 35678888899888776553
No 80
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=55.95 E-value=14 Score=23.13 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhh
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQP 45 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~ 45 (146)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 76 (88)
T 2cug_A 35 KKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76 (88)
T ss_dssp HHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHH
Confidence 3567788888899864 4577888999999987666543
No 81
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=55.53 E-value=6 Score=18.62 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCC
Q psy12430 131 PFSPGSPGSMDSH 143 (146)
Q Consensus 131 ~~~p~~~g~~~~~ 143 (146)
|.-|+++++.|++
T Consensus 6 parpg~s~~sg~g 18 (21)
T 3u85_B 6 PARPGTTGGGGGG 18 (26)
T ss_pred ccCCCcccCCCcc
Confidence 5667777666654
No 82
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.53 E-value=14 Score=22.44 Aligned_cols=38 Identities=34% Similarity=0.465 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhhhh
Q psy12430 8 AKDERRKILKACPDMH----NSNISKILGARWKAMSNAEKQP 45 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK~~ 45 (146)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 25 k~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 66 (78)
T 2ctp_A 25 KKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66 (78)
T ss_dssp HHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 3566777777899875 3567788999999987776543
No 83
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.41 E-value=13 Score=23.40 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChhhhhhh
Q psy12430 8 AKDERRKILKACPDMHN----SNISKILGARWKAMSNAEKQPY 46 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~----~eisk~lg~~Wk~Ls~eeK~~y 46 (146)
.+.+|..++.-||+... .+..+.|.+.|..|++.++..-
T Consensus 25 k~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~ 67 (88)
T 2ctr_A 25 KKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67 (88)
T ss_dssp HHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 35677888888998653 4567788888888866654433
No 84
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.74 E-value=18 Score=23.85 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN-----SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|..++.-||+... .+..+.|.+.|..|++.++..-++.
T Consensus 38 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~ 84 (112)
T 2ctq_A 38 LAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDH 84 (112)
T ss_dssp HHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 35677888888998664 5788899999999987776554444
No 85
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.58 E-value=15 Score=22.51 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCh------hHHHHHHHHHHhcCChhhhhh
Q psy12430 8 AKDERRKILKACPDMHN------SNISKILGARWKAMSNAEKQP 45 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~------~eisk~lg~~Wk~Ls~eeK~~ 45 (146)
.+.+|..++.-||+... .+..+.|.+.|..|++.++..
T Consensus 27 k~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (82)
T 2ej7_A 27 KKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70 (82)
T ss_dssp HHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 35667777778998653 346788899999988776543
No 86
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=48.79 E-value=18 Score=23.45 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCh------hHHHHHHHHHHhcCChhhhhhhHHH
Q psy12430 8 AKDERRKILKACPDMHN------SNISKILGARWKAMSNAEKQPYYEE 49 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~------~eisk~lg~~Wk~Ls~eeK~~y~~~ 49 (146)
.+.+|..++.-||+... .++.+.|.+.|..|++.++..-++.
T Consensus 20 k~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~ 67 (99)
T 2lgw_A 20 KKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDR 67 (99)
T ss_dssp HHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 35677788888998653 3678889999999977766544443
No 87
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.82 E-value=32 Score=21.64 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhh
Q psy12430 9 KDERRKILKACPDMH----NSNISKILGARWKAMSNAEK 43 (146)
Q Consensus 9 ~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~Ls~eeK 43 (146)
+.+|..++.-||+.. ..+..+.|.+.|..|++.+|
T Consensus 46 ~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 84 (90)
T 2ys8_A 46 KAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK 84 (90)
T ss_dssp HHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccc
Confidence 566777777888854 34556666666666665543
No 88
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=37.92 E-value=84 Score=21.56 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCh-----------hHHHHHHHHHHhcCChhhhhhhHH
Q psy12430 8 AKDERRKILKACPDMHN-----------SNISKILGARWKAMSNAEKQPYYE 48 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~-----------~eisk~lg~~Wk~Ls~eeK~~y~~ 48 (146)
.+.+|..++.-||+... .+..+.|.+.|..|++..+..-++
T Consensus 28 k~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd 79 (155)
T 2l6l_A 28 KQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYD 79 (155)
T ss_dssp HHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHH
T ss_pred HHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35678888888998542 368899999999998666554444
No 89
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=36.10 E-value=12 Score=24.31 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhhh
Q psy12430 9 KDERRKILKACPDMHN-----SNISKILGARWKAMSNAEK 43 (146)
Q Consensus 9 ~~~r~~i~~~~P~~~~-----~eisk~lg~~Wk~Ls~eeK 43 (146)
+.+|..++.-||+... .+..+.|.+.|..|++.++
T Consensus 22 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~ 61 (103)
T 1bq0_A 22 KAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61 (103)
T ss_dssp HHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHH
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHH
Confidence 4567777777888653 3567778888888877655
No 90
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=35.55 E-value=15 Score=23.13 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCCCh-----------hHHHHHHHHHHhcCChhhhh
Q psy12430 9 KDERRKILKACPDMHN-----------SNISKILGARWKAMSNAEKQ 44 (146)
Q Consensus 9 ~~~r~~i~~~~P~~~~-----------~eisk~lg~~Wk~Ls~eeK~ 44 (146)
+.+|..++.-||+... .+..+.|.+.|..|++.++.
T Consensus 35 ~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R 81 (94)
T 1wjz_A 35 QKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETK 81 (94)
T ss_dssp HHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHH
T ss_pred HHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHH
Confidence 4566666777898743 35777888889888877654
No 91
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=34.98 E-value=26 Score=22.81 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCCh--------hHHHHHHHHHHhcCChhhhh
Q psy12430 8 AKDERRKILKACPDMHN--------SNISKILGARWKAMSNAEKQ 44 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~~--------~eisk~lg~~Wk~Ls~eeK~ 44 (146)
.+.+|..++.-||+... .+..+.|.+.|..|++.++.
T Consensus 34 k~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R 78 (109)
T 2qsa_A 34 AKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAK 78 (109)
T ss_dssp HHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHH
Confidence 35677788888998654 36788999999999766654
No 92
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=33.67 E-value=47 Score=22.04 Aligned_cols=26 Identities=4% Similarity=0.113 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChhhhhhhHHHHH
Q psy12430 26 NISKILGARWKAMSNAEKQPYYEEQS 51 (146)
Q Consensus 26 eisk~lg~~Wk~Ls~eeK~~y~~~A~ 51 (146)
+..++-.+++.-|++|+|+.|.+..+
T Consensus 79 ~~~r~~~qmy~lLTPEQk~q~~~~~~ 104 (108)
T 3o39_A 79 AHMETQNKIYNILTPEQKKQFNANFE 104 (108)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44667789999999999999887543
No 93
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=33.03 E-value=29 Score=27.26 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=19.4
Q ss_pred HHHhcCChhhhhhhHHHHHHHHH
Q psy12430 33 ARWKAMSNAEKQPYYEEQSRLSK 55 (146)
Q Consensus 33 ~~Wk~Ls~eeK~~y~~~A~~~k~ 55 (146)
+.|+.|+.+||+.|.+.-+.++.
T Consensus 9 ke~~~Ls~~Er~~yi~Av~~l~~ 31 (303)
T 3nm8_A 9 KNVLHLTDTEKRDFVRTVLILKE 31 (303)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHHH
T ss_pred cchHHCCHHHHHHHHHHHHHHHh
Confidence 46999999999999987777665
No 94
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=32.63 E-value=81 Score=20.30 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCCChhHH----HHHHHHHHhcCChhhhhhhHHHHHHHHHH
Q psy12430 11 ERRKILKACPDMHNSNI----SKILGARWKAMSNAEKQPYYEEQSRLSKL 56 (146)
Q Consensus 11 ~r~~i~~~~P~~~~~ei----sk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~ 56 (146)
...+|++..++....-+ .-+.|.-|..|++++|+.-.+..+..|..
T Consensus 39 ay~rLk~~~~~~~~~~L~aL~gAi~G~~w~~l~~~~K~~L~~~~~~lk~~ 88 (93)
T 3mab_A 39 AFLRIWENDSSVCMSELYALEGAVQGIRWHGLDEAKKIELKKFHQSLEGH 88 (93)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHcCCcHHHCCHHHHHHHHHHHHHhhcc
Confidence 34456667777765544 44556789999999997666665555443
No 95
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=27.89 E-value=73 Score=22.22 Aligned_cols=31 Identities=6% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCChhhhhhhHHHHHHHHHHH
Q psy12430 27 ISKILGARWKAMSNAEKQPYYEEQSRLSKLH 57 (146)
Q Consensus 27 isk~lg~~Wk~Ls~eeK~~y~~~A~~~k~~~ 57 (146)
..++-.+++.-|++|+|..|.+.-++...++
T Consensus 108 r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~ 138 (145)
T 3itf_A 108 MAKVRNQMYRLLTPEQQAVLNEKHQQRMEQL 138 (145)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 4566678999999999999988765554443
No 96
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=27.41 E-value=64 Score=22.76 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCChhhhhhhHH
Q psy12430 8 AKDERRKILKACPDMH-----NSNISKILGARWKAMSNAEKQPYYE 48 (146)
Q Consensus 8 ~~~~r~~i~~~~P~~~-----~~eisk~lg~~Wk~Ls~eeK~~y~~ 48 (146)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++.++..-++
T Consensus 20 k~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd 65 (210)
T 3apq_A 20 RQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYD 65 (210)
T ss_dssp HHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3567888888899865 3456778999999998777654444
No 97
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=27.26 E-value=72 Score=19.84 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=24.8
Q ss_pred hHHHHHHHHHH-hcCChhhhhhhHHHHHHHHHH
Q psy12430 25 SNISKILGARW-KAMSNAEKQPYYEEQSRLSKL 56 (146)
Q Consensus 25 ~eisk~lg~~W-k~Ls~eeK~~y~~~A~~~k~~ 56 (146)
.+....+...| ..|++++++......+..+.+
T Consensus 76 ~~~~~~l~~~~~~~l~~e~~~~i~~~i~~l~~~ 108 (111)
T 1b0n_A 76 SEWEKLVRDAMTSGVSKKQFREFLDYQKWRKSQ 108 (111)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 35566777888 999999999888877766554
No 98
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=26.80 E-value=30 Score=22.09 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHhcCChhhhhhhHHHHHHH
Q psy12430 23 HNSNISKILGARWKAMSNAEKQPYYEEQSRL 53 (146)
Q Consensus 23 ~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~ 53 (146)
+...|--.+|..|+.|.+...-.|.++++..
T Consensus 2 ~k~~IG~nAG~VW~~L~~~~~~s~~el~k~t 32 (82)
T 2l02_A 2 DKKIVGANAGKVWHALNEADGISIPELARKV 32 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHCCSBCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCCCHHHHHHHh
Confidence 4567888899999999998788888887663
No 99
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=25.37 E-value=33 Score=21.64 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHhcCChhhhhhhHHHHHHH
Q psy12430 22 MHNSNISKILGARWKAMSNAEKQPYYEEQSRL 53 (146)
Q Consensus 22 ~~~~eisk~lg~~Wk~Ls~eeK~~y~~~A~~~ 53 (146)
++...|....|..|+.|.+...-.|.++++..
T Consensus 3 M~k~~IG~nAG~VW~~L~~~~~~s~~el~k~t 34 (77)
T 2l01_A 3 MLKEKAGALAGQIWEALNGTEGLTQKQIKKAT 34 (77)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCEEHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 55677888999999999998777888877654
No 100
>3awu_A Tyrosinase; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A 1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A 2zwd_A 2zwe_A* 2zwf_A* 2zwg_A* 3aws_A 3awt_A 1wxc_A 3awv_A 3aww_A 3awx_A 3awy_A ...
Probab=22.79 E-value=54 Score=25.27 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.5
Q ss_pred HHHhcCChhhhhhhHHHHHHHHH
Q psy12430 33 ARWKAMSNAEKQPYYEEQSRLSK 55 (146)
Q Consensus 33 ~~Wk~Ls~eeK~~y~~~A~~~k~ 55 (146)
+.|+.|+.+||+.|.+.-+.++.
T Consensus 5 ke~~~Ls~~er~~yi~Av~~l~~ 27 (281)
T 3awu_A 5 KNQATLTADEKRRFVAAVLELKR 27 (281)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHHH
T ss_pred cchHHCCHHHHHHHHHHHHHHHH
Confidence 35899999999999877666654
Done!