RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12430
(146 letters)
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 86.0 bits (213), Expect = 8e-24
Identities = 42/72 (58%), Positives = 54/72 (75%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
MNAFMVW++ +RRK+ + P MHNS ISK LGA WK +S EK+P+ +E RL LHM++
Sbjct: 7 MNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKE 66
Query: 61 HPDYRYRPRPKR 72
HPDY+YRPR K
Sbjct: 67 HPDYKYRPRRKT 78
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 83.4 bits (206), Expect = 1e-22
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
+NAFM++ K+ R ++ ++ I++ILG RW A+S E+ YYE + +LHM+
Sbjct: 7 LNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQL 66
Query: 61 HPDYRYRPRPKR 72
+P + R +
Sbjct: 67 YPGWSARDNYGK 78
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 81.4 bits (201), Expect = 7e-22
Identities = 37/71 (52%), Positives = 53/71 (74%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
MNAF+VW++D+RRK+ P M NS ISK LG +WK ++ AEK P+++E +L +H EK
Sbjct: 9 MNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREK 68
Query: 61 HPDYRYRPRPK 71
+P+Y+YRPR K
Sbjct: 69 YPNYKYRPRRK 79
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 77.9 bits (192), Expect = 1e-20
Identities = 55/64 (85%), Positives = 61/64 (95%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
MNAFMVWAKDERRKIL+A PDMHNSNISKILG+RWKAM+N EKQPYYEEQ+RLSK H+EK
Sbjct: 7 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEK 66
Query: 61 HPDY 64
+PDY
Sbjct: 67 YPDY 70
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 76.4 bits (188), Expect = 5e-20
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
+AF ++ + R KI P + +++K LG W + +KQPY ++ ++L + + +
Sbjct: 7 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 66
Query: 61 HPDYRYRPRPK 71
YR + +P
Sbjct: 67 IAAYRAKGKPD 77
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 66.3 bits (162), Expect = 4e-16
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
++A+M+W R I + P + + ++K G W+AM +K + + ++ +
Sbjct: 8 LSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRA 65
Query: 61 HPDYRY 66
++
Sbjct: 66 VKEFEA 71
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 64.1 bits (156), Expect = 5e-15
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
++A+M +A + R + PD+ + K LG +WKA++ EKQPY + K + +
Sbjct: 25 LSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESE 84
Query: 61 HPDYRYRP 68
Y
Sbjct: 85 KELYNATL 92
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 61.4 bits (149), Expect = 3e-14
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 1 MNAFMVWAKDERRKILKACPD--MHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHM 58
M+++ + + R + K PD ++ S SK RWK MS EK + + +
Sbjct: 6 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 65
Query: 59 EKHPDY 64
+ Y
Sbjct: 66 REMKTY 71
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 61.4 bits (149), Expect = 5e-14
Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
MN + ++++ + +G+RW+ +S ++K+ Y + + +
Sbjct: 13 MNGYQKFSQELLSNGEL--NHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVH 70
Query: 61 HPDYRYRPRPKR 72
+ P+
Sbjct: 71 LDLWVKSLSPQD 82
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 61.1 bits (148), Expect = 7e-14
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHM-- 58
+ + + ++R K K P+M N +++KIL ++K + +K Y ++ R +
Sbjct: 15 LTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERN 74
Query: 59 -----EKHPDYRYRPR 69
E HPD +
Sbjct: 75 LARFREDHPDLIQNAK 90
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 61.1 bits (148), Expect = 8e-14
Identities = 9/72 (12%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
N++ ++ + + D+ ++ + +WK +S EK Y+++ + K + +
Sbjct: 22 PNSYSLYCAELMANM----KDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVE 77
Query: 61 HPDYRYRPRPKR 72
+ +
Sbjct: 78 LLRFLESLPEEE 89
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 57.7 bits (139), Expect = 1e-12
Identities = 12/60 (20%), Positives = 33/60 (55%)
Query: 1 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
++A ++++++RR++ + P++ S ++++L W +S +K Y ++ L K
Sbjct: 25 VSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERK 84
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.5 bits (64), Expect = 0.28
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 36 KAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKRTCIVDGKKMRISEYK 87
K MS EK EE +L K + CI+D K RI+ +K
Sbjct: 117 KQMSKEEKLKIKEENEKLLKEYG--------------FCIMDNHKERIANFK 154
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.6 bits (59), Expect = 0.92
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 36 KAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKRTCIVDGKKMRISEYK 87
K +++ EK+ E+ + + + C +DG++ ++ +K
Sbjct: 109 KQLTSQEKKQIRLEREKFEE--------------DYKFCELDGRREQVGNFK 146
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 436
Score = 26.7 bits (58), Expect = 1.2
Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 17/124 (13%)
Query: 3 AFMVWAK---DERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHME 59
A + + R IL D +N I A ++ A++ + S L +L +
Sbjct: 15 AGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLAD--SLLKRLDLF 72
Query: 60 KHPDYRYRPRPKRTCIVDG----KKMRISEYKTLMRQRRNEMRQLWCRGEAGPSGSGGPA 115
K K ++ G ++ K M + ++ L+
Sbjct: 73 KG--------DKFEVMLQGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFE 124
Query: 116 FPFP 119
Sbjct: 125 SRPE 128
>d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 225
Score = 26.3 bits (58), Expect = 1.3
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 1 MNAF----MVWAKDERRKILKACPDMHNSNISKILGARWKAMSNA 41
+ A M +AK RK+L N+ +K+ R+ ++ +
Sbjct: 59 LKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKS 103
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 26.2 bits (56), Expect = 1.9
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 2 NAFMVWAK---DERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYE 48
A+ V E+ K +K + + +IL A + A ++ E
Sbjct: 12 EAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKE 61
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 24.3 bits (53), Expect = 6.4
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 10 DERRKILKACPDMHNSNISKILGARWKAMSNAEKQPYYEEQSRLSKLHMEK 60
+ + H ISK R A++ A KQP+ + +L E
Sbjct: 116 ELMTSLHTKLEGFHT-QISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEA 165
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II
protein 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 103
Score = 23.3 bits (50), Expect = 10.0
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 13 RKILKACPDMHNSNISKILGARWKAMSNAEKQP 45
+ K C D +++K+L WK + ++ +
Sbjct: 60 NGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRTT 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.419
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 590,865
Number of extensions: 26446
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 23
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)