BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12432
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LTF|D Chain D, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|B Chain B, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
Length = 58
Score = 82.8 bits (203), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/57 (61%), Positives = 44/57 (77%)
Query: 22 TFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLP 78
TF TY CP T+ WYCLN A CF VKI + +Y+CECA G+MGQRCE+K++D +YLP
Sbjct: 1 TFPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLP 57
>pdb|3C9A|C Chain C, High Resolution Crystal Structure Of Argos Bound To The
Egf Domain Of Spitz
pdb|3C9A|D Chain D, High Resolution Crystal Structure Of Argos Bound To The
Egf Domain Of Spitz
pdb|3CA7|A Chain A, High Resolution Crystal Structure Of The Egf Domain Of
Spitz
pdb|3LTG|D Chain D, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low
Affinity Spitz Mutant
Length = 52
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 22 TFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD 73
TF TY CP T+ WYCLN A CF VKI + +Y+CECA G+MGQRCE+K++D
Sbjct: 1 TFPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEID 52
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 27 ACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
CP +Y YCLNG C ++ +S Y C C GY G RC+ +DL
Sbjct: 5 GCPSSYDG-YCLNGGVCMHIESLDS--YTCNCVIGYSGDRCQTRDL 47
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 40.4 bits (93), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 27 ACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
CP +Y YCLNG C ++ +S Y C C GY G RCE DL
Sbjct: 5 GCPSSYDG-YCLNGGVCMHIESLDS--YTCNCVIGYSGDRCEHADL 47
>pdb|1P9J|A Chain A, Solution Structure And Dynamics Of The EgfTGF-Alpha
Chimera T1e
Length = 54
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 21 ITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
+ H CP ++ YCL+ C ++ + Y C C GY+G+RC+++DL
Sbjct: 1 VVSHFNDCPLSHDG-YCLHDGVCMYIEALDK--YACNCVVGYIGERCQYRDL 49
>pdb|1IVO|C Chain C, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains.
pdb|1IVO|D Chain D, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains.
pdb|1NQL|B Chain B, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf.
pdb|2KV4|A Chain A, Egf
Length = 53
Score = 37.4 bits (85), Expect = 0.008, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
CP ++ YCL+ C ++ + Y C C GY+G+RC+++DL
Sbjct: 6 CPLSHDG-YCLHDGVCMYIEALDK--YACNCVVGYIGERCQYRDL 47
>pdb|3NJP|C Chain C, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|D Chain D, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 47
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
CP ++ YCL+ C ++ + Y C C GY+G+RC+++DL
Sbjct: 2 CPLSHDG-YCLHDGVCMYIEALDK--YACNCVVGYIGERCQYRDL 43
>pdb|1JL9|A Chain A, Crystal Structure Of Human Epidermal Growth Factor
pdb|1JL9|B Chain B, Crystal Structure Of Human Epidermal Growth Factor
Length = 51
Score = 37.0 bits (84), Expect = 0.009, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
CP ++ YCL+ C ++ + Y C C GY+G+RC+++DL
Sbjct: 6 CPLSHDG-YCLHDGVCMYIEALDK--YACNCVVGYIGERCQYRDL 47
>pdb|1A3P|A Chain A, Role Of The 6-20 Disulfide Bridge In The Structure And
Activity Of Epidermal Growth Factor, Nmr, 20 Structures
Length = 45
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 30 PTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
P+ YCLNG ++ +S Y C C GY G RC+ +DL
Sbjct: 4 PSSYDGYCLNGGVXMHIESLDS--YTCNCVIGYSGDRCQTRDL 44
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 33.9 bits (76), Expect = 0.070, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 22 TFHTYACPPTYATWYCLNGATCFTVK-IGESLLYNCECADGYMGQRC 67
T H C T +C+NG CF VK + Y C+C G+ G RC
Sbjct: 2 TSHLVKCAEKEKT-FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 47
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, 20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, Minimized Average Structure
Length = 63
Score = 33.1 bits (74), Expect = 0.13, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 24 HTYACPPTYATWYCLNGATCFTVK-IGESLLYNCECADGYMGQRC 67
H C T +C+NG CF VK + Y C+C G+ G RC
Sbjct: 2 HLVKCAEKEKT-FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
>pdb|3U7U|G Chain G, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|H Chain H, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|I Chain I, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|J Chain J, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|K Chain K, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|L Chain L, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 55
Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 22 TFHTYACPPTYATWYCLNGATCFTVK-IGESLLYNCECADGYMGQRCE 68
T H C T +C+NG CF VK + Y C+C + + G RC+
Sbjct: 2 TSHLVKCAEKEKT-FCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQ 48
>pdb|1MOX|C Chain C, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|1MOX|D Chain D, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|2TGF|A Chain A, The Solution Structure Of Human Transforming Growth
Factor Alpha
pdb|3TGF|A Chain A, The Solution Structure Of Human Transforming Growth
Factor Alpha
pdb|4TGF|A Chain A, Solution Structures Of Human Transforming Growth Factor
Alpha Derived From 1H Nmr Data
pdb|3E50|C Chain C, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|D Chain D, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 50
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
H CP ++ T +C +G F V+ + C C GY+G RCE DL
Sbjct: 4 HFNDCPDSH-TQFCFHGTCRFLVQEDKPA---CVCHSGYVGARCEHADL 48
>pdb|1YUF|A Chain A, Type Alpha Transforming Growth Factor, Nmr, 16 Models
Without Energy Minimization
pdb|1YUG|A Chain A, Type Alpha Transforming Growth Factor, Nmr, 15 Models
After Ecepp3 ENERGY MINIMIZATION
Length = 50
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
H CP ++ T +C +G F V+ + C C GY+G RCE DL
Sbjct: 4 HFNDCPDSH-TQFCFHGTCRFLVQEDKPA---CVCHSGYVGARCEHADL 48
>pdb|1IOX|A Chain A, Nmr Structure Of Human Betacellulin-2
pdb|1IP0|A Chain A, Nmr Structure Of Human Betacellulin-2
Length = 50
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
H CP Y YC+ G F V +C C +GY+G RCE DL
Sbjct: 4 HFSRCPKQY-KHYCIKGRCRFVV---AEQTPSCVCDEGYIGARCERVDL 48
>pdb|2I9A|A Chain A, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|B Chain B, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|C Chain C, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|D Chain D, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9B|A Chain A, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|B Chain B, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|C Chain C, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|D Chain D, Crystal Structure Of Atf-urokinase Receptor Complex
Length = 145
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
CLNG TC + K ++ + C C + GQ CE
Sbjct: 15 CLNGGTCVSNKYFSNIHW-CNCPKKFGGQHCEI 46
>pdb|3BT1|A Chain A, Structure Of Urokinase Receptor, Urokinase And
Vitronectin Complex
pdb|3BT2|A Chain A, Structure Of Urokinase Receptor, Urokinase And
Vitronectin Complex
Length = 135
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
CLNG TC + K ++ + C C + GQ CE
Sbjct: 15 CLNGGTCVSNKYFSNIHW-CNCPKKFGGQHCEI 46
>pdb|3U73|A Chain A, Crystal Structure Of Stabilized Human Upar Mutant In
Complex With Atf
Length = 132
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
CLNG TC + K ++ + C C + GQ CE
Sbjct: 13 CLNGGTCVSNKYFSNIHW-CNCPKKFGGQHCEI 44
>pdb|1URK|A Chain A, Solution Structure Of The Amino Terminal Fragment Of
Urokinase-Type Plasminogen Activator
Length = 130
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
CLNG TC + K ++ + C C + GQ CE
Sbjct: 8 CLNGGTCVSNKYFSNIHW-CNCPKKFGGQHCEI 39
>pdb|2FD6|A Chain A, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar
Antibody At 1.9 A
Length = 122
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
CLNG TC + K ++ + C C + GQ CE
Sbjct: 3 CLNGGTCVSNKYFSNIHW-CNCPKKFGGQHCEI 34
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
CLN C IG+ Y C CA+G+ G+ CEF
Sbjct: 11 CLNQGHC-KXGIGD---YTCTCAEGFEGKNCEF 39
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
CLN C IG+ Y C CA+G+ G+ CEF
Sbjct: 55 CLNQGHC-KXGIGD---YTCTCAEGFEGKNCEF 83
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
CLN C IG+ Y C CA+G+ G+ CEF
Sbjct: 11 CLNQGHC-KDGIGD---YTCTCAEGFEGKNCEF 39
>pdb|1K36|A Chain A, Nmr Structure Of Human Epiregulin
pdb|1K37|A Chain A, Nmr Structure Of Human Epiregulin
Length = 46
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 36 YCLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
YCL+G + V + ++ C C GY G RCE
Sbjct: 13 YCLHGQCIYLVDMSQNY---CRCEVGYTGVRCE 42
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C NG C +I CEC DG+ G CE
Sbjct: 155 CRNGGFCNERRI-------CECPDGFHGPHCE 179
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C NG C +I CEC DG+ G CE
Sbjct: 155 CRNGGFCNERRI-------CECPDGFHGPHCE 179
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
CLNG TC + Y C C +GY G CE
Sbjct: 140 CLNGGTCSNTGPDK---YQCSCPEGYSGPNCEI 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,870,927
Number of Sequences: 62578
Number of extensions: 166691
Number of successful extensions: 394
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 48
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)