RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12432
(229 letters)
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 99.2 bits (247), Expect = 1e-27
Identities = 35/57 (61%), Positives = 44/57 (77%)
Query: 22 TFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLP 78
TF TY CP T+ WYCLN A CF VKI + +Y+CECA G+MGQRCE+K++D +YLP
Sbjct: 1 TFPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLP 57
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 93.4 bits (232), Expect = 1e-25
Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 22 TFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD 73
TF TY CP T+ WYCLN A CF VKI + +Y+CECA G+MGQRCE+K++D
Sbjct: 1 TFPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEID 52
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 61.0 bits (148), Expect = 4e-13
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDG 74
CP ++ YCL+ C ++ + Y C C GY+G+RC+++DL
Sbjct: 6 CPLSHD-GYCLHDGVCMYIEALDK--YACNCVVGYIGERCQYRDLKW 49
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 61.0 bits (148), Expect = 4e-13
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDG 74
CP +Y YCLNG C ++ +S Y C C GY G RC+ +DL
Sbjct: 6 CPSSYD-GYCLNGGVCMHIESLDS--YTCNCVIGYSGDRCQTRDLRW 49
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease,
polymorphism, protease, zinc; 2.30A {Homo sapiens} PDB:
1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 46.3 bits (110), Expect = 9e-08
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
H CP ++ +C +G F V+ + C C GY+G RCE DL
Sbjct: 4 HFNDCPDSHTQ-FCFHGTCRFLVQEDK---PACVCHSGYVGARCEHADL 48
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 45.9 bits (108), Expect = 2e-07
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESL-LYNCECADGYMGQRCEFKDLDGSY 76
H C T +C+NG CF VK + Y C+C G+ G RC
Sbjct: 2 HLVKCAEKEKT-FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQ 54
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 45.2 bits (107), Expect = 3e-07
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
H CP Y YC+ G F V +C C +GY+G RCE DL
Sbjct: 4 HFSRCPKQYKH-YCIKGRCRFVVAEQT---PSCVCDEGYIGARCERVDL 48
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like
domain, repeat; HET: ABA; NMR {Mus musculus} SCOP:
g.3.11.1
Length = 45
Score = 42.0 bits (98), Expect = 4e-06
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 29 PPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
P +Y YCLNG ++ +S Y C C GY G RC+ +DL
Sbjct: 4 PSSYDG-YCLNGGVXMHIESLDS--YTCNCVIGYSGDRCQTRDL 44
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 40.6 bits (95), Expect = 1e-05
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
C YCL+G + V + + C C GY G RCE L
Sbjct: 6 CSSDMNG-YCLHGQCIYLVDMSQ---NYCRCEVGYTGVRCEHFFL 46
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 39.8 bits (93), Expect = 6e-05
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 33 ATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
+ C NG TC + C+C +G+ G+ CE
Sbjct: 52 SEPRCFNGGTCQQALYFSD--FVCQCPEGFAGKSCE 85
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular
MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 40.9 bits (96), Expect = 7e-05
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 37 CLNGATCFTVKIGESLL---YNCECADGYMGQRCE 68
C NG TC + Y C+C G+ G C+
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ 94
Score = 40.1 bits (94), Expect = 9e-05
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETAS 89
C NG C S ++CEC DG+ C ++ +
Sbjct: 8 CENGGICLPGLADGS--FSCECPDGFTDPNCS-SVVEVASDEEEPTSAGPCTP 57
Score = 38.9 bits (91), Expect = 3e-04
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFK 70
C NG C T + Y+CEC +MG+ C++K
Sbjct: 105 CKNGGIC-TDLVAN---YSCECPGEFMGRNCQYK 134
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 38.2 bits (90), Expect = 7e-05
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
CLNG +C I Y C C G+ G+ CE
Sbjct: 11 CLNGGSC-KDDINS---YECWCPFGFEGKNCEL 39
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 40.4 bits (95), Expect = 9e-05
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 16/53 (30%)
Query: 28 CPPTYATWY------------CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
T W C N C +GE Y C C +G+ G+ CE
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQNQGKC-KDGLGE---YTCTCLEGFEGKNCE 77
Score = 35.0 bits (81), Expect = 0.005
Identities = 6/32 (18%), Positives = 7/32 (21%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C + C CA GY
Sbjct: 89 GDCDQFC-HEEQNS---VVCSCARGYTLADNG 116
Score = 31.1 bits (71), Expect = 0.14
Identities = 2/32 (6%), Positives = 6/32 (18%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C+ + E+ +
Sbjct: 12 CMEETCSY----EEAREVFEDSDKTNEFWNKY 39
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 40.0 bits (94), Expect = 2e-04
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
CLNG TC + Y C C +GY G CE
Sbjct: 140 CLNGGTCSNTGPDK---YQCSCPEGYSGPNCE 168
Score = 30.4 bits (69), Expect = 0.30
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 7/32 (21%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C N C +G+MG C
Sbjct: 40 FFGHYAC-------DQNGNKTCMEGWMGPECN 64
Score = 30.4 bits (69), Expect = 0.33
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 7/32 (21%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
+C +C C G+ G C+
Sbjct: 73 SPKHGSCKLP-------GDCRCQYGWQGLYCD 97
Score = 30.0 bits (68), Expect = 0.40
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 7/32 (21%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C + C C + GQ C+
Sbjct: 104 GCVHGICNEP-------WQCLCETNWGGQLCD 128
Score = 28.9 bits (65), Expect = 0.97
Identities = 5/32 (15%), Positives = 7/32 (21%), Gaps = 7/32 (21%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
+ + C D Y G C
Sbjct: 7 HHHHGSI-------EGRSAVTCDDYYYGFGCN 31
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 39.1 bits (92), Expect = 2e-04
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C N ATC +IGE + C C GY G CE
Sbjct: 53 CQNDATC-LDQIGE---FQCICMPGYEGVHCE 80
Score = 38.3 bits (90), Expect = 4e-04
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C + C +G + C+C GY G RCE
Sbjct: 15 CEHAGKC-INTLGS---FECQCLQGYTGPRCE 42
Score = 37.6 bits (88), Expect = 7e-04
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
CL+ C KI E + CEC G+ G C+
Sbjct: 91 CLHNGRC-LDKINE---FQCECPTGFTGHLCQ 118
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 39.0 bits (91), Expect = 5e-04
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 16/53 (30%)
Query: 28 CPPTYATWY------------CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
T W C N C +GE Y C C +G+ G+ CE
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQNQGKC-KDGLGE---YTCTCLEGFEGKNCE 77
Score = 34.3 bits (79), Expect = 0.014
Identities = 6/32 (18%), Positives = 7/32 (21%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C + C CA GY
Sbjct: 89 GDCDQFC-HEEQNS---VVCSCARGYTLADNG 116
Score = 29.3 bits (66), Expect = 0.66
Identities = 4/37 (10%), Positives = 7/37 (18%), Gaps = 4/37 (10%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD 73
C + + G +K D
Sbjct: 127 CGKQTLERRKRSV----AQATSSSGEAPDSITWKPYD 159
Score = 27.0 bits (60), Expect = 4.7
Identities = 2/32 (6%), Positives = 6/32 (18%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C+ + E+ +
Sbjct: 12 CMEETCSY----EEAREVFEDSDKTNEFWNKY 39
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 36.2 bits (83), Expect = 8e-04
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C Y +C++G + ++ +C C GY G+RC
Sbjct: 40 CLRKYKD-FCIHGECKYVKELRA---PSCICHPGYHGERCH 76
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 37.3 bits (87), Expect = 0.001
Identities = 6/32 (18%), Positives = 8/32 (25%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
NG +C C +GY
Sbjct: 93 NENGGCEQYCSDHTGTKRSCRCHEGYSLLADG 124
Score = 36.9 bits (86), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C NG +C ++ Y C C + G+ CE
Sbjct: 55 CQNGGSC-KDQLQS---YICFCLPAFEGRNCE 82
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 16/53 (30%)
Query: 28 CPPTYATWY------------CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
T W CLNG C I Y C C G+ G+ CE
Sbjct: 35 TEKTNEFWKQYVDGDQCEPNPCLNGGLC-KDDINS---YECWCQVGFEGKNCE 83
Score = 33.9 bits (78), Expect = 0.018
Identities = 5/32 (15%), Positives = 6/32 (18%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
G C C GY +
Sbjct: 94 RCKQFCK----TGADSKVLCSCTTGYRLAPDQ 121
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 34.1 bits (77), Expect = 0.017
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 19 PNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
P C C NG C +I CEC DG+ G CE
Sbjct: 137 PQNAIFFKTCQQAECPGGCRNGGFCNERRI-------CECPDGFHGPHCE 179
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 34.8 bits (80), Expect = 0.018
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD 71
C NG TCF C C G G++CE
Sbjct: 219 CFNGGTCFYP-------GKCICPPGLEGEQCEISK 246
Score = 34.1 bits (78), Expect = 0.031
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C NG C C+C+ GY G C
Sbjct: 251 CRNGGKCIGK-------SKCKCSKGYQGDLCS 275
Score = 33.3 bits (76), Expect = 0.047
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C TC C+C +G+ G+ C
Sbjct: 283 CGAHGTC-------HEPNKCQCQEGWHGRHCN 307
Score = 32.5 bits (74), Expect = 0.097
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C NG C CEC DG+ G CE
Sbjct: 155 CRNGGFCNE-------RRICECPDGFHGPHCE 179
Score = 31.7 bits (72), Expect = 0.15
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C+NG C C C G+ G C+
Sbjct: 187 CMNGGLC-------VTPGFCICPPGFYGVNCD 211
Score = 28.3 bits (63), Expect = 1.8
Identities = 3/53 (5%), Positives = 11/53 (20%), Gaps = 2/53 (3%)
Query: 16 TPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
+ ++ + C G + + + C+
Sbjct: 97 PHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNT--ILKTPQNAIFFKTCQ 147
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 31.4 bits (71), Expect = 0.022
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK 70
C + +C++G + + C+C Y G+RC K
Sbjct: 12 CNAEFQN-FCIHGECKYIEHLEAVT---CKCQQEYFGERCGEK 50
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 32.4 bits (74), Expect = 0.031
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C TC IG ++C+C G+ G+ C+
Sbjct: 22 CCGHGTC-IDGIGS---FSCDCRSGWEGRFCQ 49
Score = 29.7 bits (67), Expect = 0.29
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C ++G C CA GY
Sbjct: 62 GGCTHYC-LEEVGW---RRCSCAPGYKLGDDL 89
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 33.5 bits (76), Expect = 0.041
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSY 76
C NG C C C+ G+ G +CE + +
Sbjct: 295 CNNGEMCDRF-------QGCLCSPGWQGLQCEREGIPRMT 327
Score = 32.8 bits (74), Expect = 0.079
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSY 76
C+N C C C G+MG+ CE ++
Sbjct: 205 CMNNGVC------HEDTGECICPPGFMGRTCEKACELHTF 238
Score = 30.4 bits (68), Expect = 0.44
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLP 78
C C + Y C CA G+ G +C G Y P
Sbjct: 246 CSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGP 287
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 33.5 bits (77), Expect = 0.043
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
CL+ +C I Y C C+ GY G CE
Sbjct: 13 CLHNGSC-QDSIWG---YTCTCSPGYEGSNCE 40
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615
antibody, FAB, ternary complex, immune SY hydrolase;
HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A*
3laq_A* 1kdu_A
Length = 122
Score = 30.2 bits (67), Expect = 0.24
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
CLNG TC + K ++ + C C + GQ CE
Sbjct: 3 CLNGGTCVSNKYFSNIHW-CNCPKKFGGQHCE 33
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 31.2 bits (70), Expect = 0.30
Identities = 11/56 (19%), Positives = 15/56 (26%)
Query: 14 SPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
+ P + C NG C G C C G+ G C+
Sbjct: 498 HTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQC 553
Score = 28.1 bits (62), Expect = 3.0
Identities = 8/32 (25%), Positives = 9/32 (28%), Gaps = 8/32 (25%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C C CEC GY C+
Sbjct: 568 CSGRGRCRC--------NVCECHSGYQLPLCQ 591
Score = 27.8 bits (61), Expect = 3.5
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 27 ACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD 71
ACP + + G TC + C Y ++ + D
Sbjct: 624 ACPGLQLSNNPVKGRTC-------KERDSEGCWVAYTLEQQDGMD 661
Score = 27.8 bits (61), Expect = 3.5
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 28 CPPTYATWYCLNGATCFTV-KIGESLLYNCECADGYMGQRCE 68
C Y C C + S + G G+ C
Sbjct: 581 CHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCS 622
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 29.7 bits (67), Expect = 0.40
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
C C + Y C+C G+ G +CE
Sbjct: 127 CSGHGEC----VETINNYTCKCDPGFSGLKCEQ 155
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 30.4 bits (68), Expect = 0.42
Identities = 12/64 (18%), Positives = 16/64 (25%), Gaps = 7/64 (10%)
Query: 11 RPPSPTPRPNITFHTYACPPTYATWYCLNGATC--FTVKIGESLLYNCECADGYM----G 64
+P F P NG C + Y C C G G
Sbjct: 246 HSDIFSPMDIHAFSQQRQPNATNPCGIDNG-GCSHLCLMSPVKPFYQCACPTGVKLLENG 304
Query: 65 QRCE 68
+ C+
Sbjct: 305 KTCK 308
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 29.4 bits (66), Expect = 0.54
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 30 PTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
+ W C C + Y C C GY G +C+F
Sbjct: 120 ASCQPWSCSGHGEC----VEIINNYTCNCDVGYYGPQCQF 155
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 30.1 bits (67), Expect = 0.59
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 8/47 (17%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQV 83
C C +C C + G C + + S +
Sbjct: 536 CSGHGQCSC--------GDCLCDSDWTGYYCNCTTRTDTCMSSNGLL 574
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 29.6 bits (66), Expect = 0.77
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 131 GSSLQRPRMPFER----RPSPADFVLTRITTEAPRAADTRTSITITGKGDSVSASQLYHQ 186
G +++ ++ ++ RP + F L T +A + + G
Sbjct: 53 GKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRL 112
Query: 187 SSPPLPHMSHPPSCTPLPPAPSQPPDDIKA 216
+ PP P+ ++ KA
Sbjct: 113 TVLEDLKNVFPPEVAVFEPSEAEISHTQKA 142
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.0 bits (64), Expect = 1.4
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 36 YCLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
+C NG TC C C Y G CE
Sbjct: 372 HCQNGGTC-------HNNVRCLCPAAYTGILCE 397
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.1 bits (63), Expect = 1.7
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 54 YNCECADGYMGQRCEFKDLD 73
+ CEC+ + ++
Sbjct: 24 FICECSSESTLDPTKTICIE 43
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 27.5 bits (61), Expect = 2.3
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 30 PTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
+ C C + Y C C G+ G CE+
Sbjct: 120 ASCQDMSCSKQGEC----LETIGNYTCSCYPGFYGPECEY 155
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2
g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 27.5 bits (61), Expect = 2.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C G++C + + C G G+RCE
Sbjct: 3 CPGGSSC-AIVPKTKEVVCTHCPTGTAGKRCE 33
>3zzo_A CG11501, RH38110P; immune system, immune response; 1.15A
{Drosophila melanogaster} PDB: 3zzr_A
Length = 95
Score = 26.5 bits (58), Expect = 2.9
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCE---CADGY--MGQRC 67
C + ++ C V+ E+ CE CADG +G C
Sbjct: 3 CTSRELVEFKMDRGDCEAVRAIENYPNGCEVTICADGVAQLGAYC 47
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich
fold, jelly roll, sugar binding protein,
hydrolase-carbohydrate complex; HET: MES GOL; 1.80A
{Zobellia galactanivorans}
Length = 280
Score = 27.9 bits (62), Expect = 3.0
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 23 FHTYAC---PPTYATWYCLNGATCFTVK 47
FH Y ++ L+G V
Sbjct: 201 FHVYGVWWKSKDEIIFF-LDGKMQSKVT 227
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 27.9 bits (61), Expect = 3.2
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 16 TPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD-GYMGQRCE 68
P + CLNG C V C+C+ G+ G+ C
Sbjct: 177 EPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQ----AVCDCSRTGFRGKDCS 226
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 4.3
Identities = 26/143 (18%), Positives = 41/143 (28%), Gaps = 71/143 (49%)
Query: 75 SYLPSRKQVMLETASIASGASIAVF-----LVVILCFSLYVHCQRRKKQAQAASVCCTDG 129
S+LP+ KQV I++ LVV + G
Sbjct: 358 SHLPAGKQV-----------EISLVNGAKNLVV------------------------S-G 381
Query: 130 PGSSLQR----------P------RMPF-ERRPSPADFVLTRITTEAP------RAADTR 166
P SL P R+PF ER+ ++ L + +P A
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-PVA--SPFHSHLLVPASDL 438
Query: 167 TSITITGKGDSVSASQL----YH 185
+ + S +A + Y
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYD 461
Score = 26.9 bits (59), Expect = 7.4
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 30/120 (25%)
Query: 63 MGQRCEFKDLDGSYLPSRKQVMLETA----SIASGASIAVFLVVILCF--SLYVHCQ--- 113
MG DL + + + V A G SI L +++ +L +H
Sbjct: 1631 MG-----MDLYKTS-KAAQDV-WNRADNHFKDTYGFSI---LDIVINNPVNLTIHFGGEK 1680
Query: 114 -RRKKQAQAASVC--CTDGPGSSLQRPRMPFERRPSPADFVLTRITTEAPRAADTRTSIT 170
+R ++ +A + DG ++ E+ + T T + + + T T
Sbjct: 1681 GKRIRENYSAMIFETIVDG--------KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 27.2 bits (59), Expect = 5.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 56 CECADGYMGQRCE 68
C C G++G +CE
Sbjct: 460 CRCGPGWLGSQCE 472
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 26.9 bits (59), Expect = 5.7
Identities = 11/50 (22%), Positives = 14/50 (28%)
Query: 19 PNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
P + C NG C G C C G+ G C+
Sbjct: 164 PGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ 213
>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis}
SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A*
1kqy_A* 1kqz_A*
Length = 273
Score = 26.6 bits (58), Expect = 7.4
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 172 TGKGDSVSASQLYHQSSPPLPHMSHPPSCTPLPPAPSQPPDDIKA 216
T K V+ + L + P ++ C P + + I++
Sbjct: 22 TRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIRS 66
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 26.9 bits (59), Expect = 7.6
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 25/89 (28%)
Query: 1 ACSSRSTPKPRPPSPTPR--PNITFHTYACP-------PTYATWY---------CLNGAT 42
+P + + Y P P + + C +G
Sbjct: 376 LMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGV 435
Query: 43 CFTVKIGESLLYNCECADGYMGQRCEFKD 71
C C C GY+G +CE D
Sbjct: 436 CVRPN-------KCLCKKGYLGPQCEQVD 457
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 26.2 bits (58), Expect = 7.8
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 54 YNCECADGYMGQRCEFKDLD 73
Y C+C + +D
Sbjct: 24 YICDCPPDFELNPTRVGCVD 43
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 26.8 bits (58), Expect = 8.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 56 CECADGYMGQRCE 68
C CA G +G+ CE
Sbjct: 481 CSCAPGRLGRLCE 493
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 26.5 bits (57), Expect = 8.5
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 184 YHQSSPPLPHMSHPPSCTPLPPAPSQPPDDIKADMRSSQVS 224
Y+ + +M PP LPP +Q + SQ +
Sbjct: 11 YNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCT 51
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 25.8 bits (57), Expect = 8.6
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 195 SHPPSCTPLPPAPSQPPDDIKADMRS 220
S P PS PP +++ S
Sbjct: 108 SSPVLVRTDEDVPSGPPRKVESGPSS 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.416
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,410,946
Number of extensions: 186903
Number of successful extensions: 785
Number of sequences better than 10.0: 1
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 126
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)