RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12432
(229 letters)
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 54.5 bits (131), Expect = 3e-11
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
H CP ++ T +C +G F + + C C GY+G RCE DL
Sbjct: 3 HFNDCPDSH-TQFCFHGTCRF---LVQEDKPACVCHSGYVGARCEHADL 47
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 52.9 bits (127), Expect = 1e-10
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
H CP Y YC+ G F V +C C +GY+G RCE DL
Sbjct: 4 HFSRCPKQY-KHYCIKGRCRFVVAEQT---PSCVCDEGYIGARCERVDL 48
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 51.0 bits (122), Expect = 8e-10
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD 73
CP +Y YCLNG C ++ +S Y C C GY G RC+ +DL
Sbjct: 6 CPSSY-DGYCLNGGVCMHIESLDS--YTCNCVIGYSGDRCQTRDLR 48
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 47.9 bits (114), Expect = 8e-09
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD 73
CP ++ YCL+ C ++ + Y C C GY+G+RC+++DL
Sbjct: 4 CPLSH-DGYCLHDGVCMYIEALDK--YACNCVVGYIGERCQYRDLK 46
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 40.9 bits (96), Expect = 3e-06
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
C YCL+G + V + + C C GY G RCE L
Sbjct: 6 CSSDMNG-YCLHGQCIYLVDMSQ---NYCRCEVGYTGVRCEHFFL 46
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 37.0 bits (86), Expect = 7e-05
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C NG +C Y C C + G+ CE
Sbjct: 10 CQNGGSCKDQLQS----YICFCLPAFEGRNCE 37
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 37.3 bits (86), Expect = 9e-05
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 33 ATWYCLNGATCFTVKIGESL-LYNCECADGYMGQRCEFKDLDGSYLPSRKQ 82
+C+NG CF VK + Y C+C G+ G RC + +
Sbjct: 10 EKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKAE 60
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 36.2 bits (84), Expect = 1e-04
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C N C Y C C +G+ G+ CE
Sbjct: 8 CQNQGKCKDGLGE----YTCTCLEGFEGKNCE 35
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 36.2 bits (84), Expect = 1e-04
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C + C +G + C+C GY G RCE
Sbjct: 13 CEHAGKC-INTLGS---FECQCLQGYTGPRCE 40
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 36.2 bits (84), Expect = 1e-04
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C N ATC +IGE + C C GY G CE
Sbjct: 9 CQNDATC-LDQIGE---FQCICMPGYEGVHCE 36
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 36.2 bits (84), Expect = 1e-04
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
CLNG +C Y C C G+ G+ CE
Sbjct: 11 CLNGGSCKDDINS----YECWCPFGFEGKNCE 38
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 35.8 bits (83), Expect = 2e-04
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
CL+ C + CEC G+ G C+
Sbjct: 8 CLHNGRCLDKINE----FQCECPTGFTGHLCQ 35
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 35.2 bits (81), Expect = 3e-04
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C NG TC + C+C +G+ G+ CE
Sbjct: 6 CFNGGTCQQALYFSD--FVCQCPEGFAGKSCE 35
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 34.4 bits (79), Expect = 6e-04
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
C C Y C C G+ G CE+
Sbjct: 9 CSKQGECLETIGN----YTCSCYPGFYGPECEY 37
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor,
HBEGF {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 34.3 bits (79), Expect = 7e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
C Y +C++G + ++ +C C GY G+RC
Sbjct: 2 CLRKYKD-FCIHGECKYVKELRA---PSCICHPGYHGERCHG 39
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 33.2 bits (76), Expect = 0.002
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
C C Y C+C G+ G +CE
Sbjct: 9 CSGHGECVETINN----YTCKCDPGFSGLKCEQ 37
>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 32.2 bits (73), Expect = 0.004
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
CLNG TC + K S ++ C C + GQ CE
Sbjct: 4 CLNGGTCVSNKYF-SNIHWCNCPKKFGGQHCE 34
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 31.3 bits (71), Expect = 0.006
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCEC-ADGYMGQRCE 68
C N C + + Y C+C G+ G+ C
Sbjct: 9 CQNRGECMSTGFDQ---YKCDCTRTGFYGENCT 38
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 29.4 bits (66), Expect = 0.041
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 37 CLNGATCFTVKIGESLLYNCEC-ADGYMGQRCE 68
C + C + Y C+C GY G C
Sbjct: 10 CQHQGICVRFGLDR---YQCDCTRTGYSGPNCT 39
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 27.5 bits (61), Expect = 0.23
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
C +G TC ++C+C G+ G+ C+
Sbjct: 16 CGHG-TCIDGIGS----FSCDCRSGWEGRFCQ 42
>g1uhe.1 b.52.2.1 (B:,A:) Pyruvoyl dependent aspartate
decarboxylase, ADC {Helicobacter pylori [TaxId: 210]}
Length = 121
Score = 25.4 bits (56), Expect = 3.5
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 20 NIT----FHTYACPPTYATWYCLNGATCFTVKIGE 50
++ F TY C+NGA V IG+
Sbjct: 47 DVNNGERFSTYVILGKKRGEICVNGAAARKVAIGD 81
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 26.0 bits (56), Expect = 4.3
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 5 RSTPKPRPPSPTPRPN 20
+ P P P PRPN
Sbjct: 284 SNRPGPTPGCQLPRPN 299
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 55
Score = 23.7 bits (51), Expect = 4.6
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSY 76
C G++C V + ++ C G G+RCE DG +
Sbjct: 3 CPGGSSCAIVPKTKEVVC-THCPTGTAGKRCE-LCDDGYF 40
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
9606]}
Length = 184
Score = 25.4 bits (55), Expect = 5.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 181 SQLYHQSSPPLPHMSHPPSCTPLPPAP 207
+QL S P + + P P P
Sbjct: 126 AQLLDNSDTAEPTKAGRGASQPPTPTP 152
>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 41
Score = 23.2 bits (50), Expect = 5.8
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 39 NGATCFTVKIGESLLYNCECADGYMGQRCE 68
NG C G C C G+ G C+
Sbjct: 11 NGQVCGGPGRGLCFCGKCRCHPGFEGSACQ 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.416
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 850,058
Number of extensions: 37933
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 33
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)