BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12437
(901 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/634 (50%), Positives = 442/634 (69%), Gaps = 3/634 (0%)
Query: 270 EIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQ 329
++ E+F+Y+ T +G+P++RPE+Q++TVE++A++DY +R PPQPA+YLF+LDVS A +
Sbjct: 117 DVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLR-PPQPAVYLFVLDVSHNAVE 175
Query: 330 SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389
+GYL +C+ LL L +PGD RT I +T+DS +HFY+L EG +QP +I++DIDD+FL
Sbjct: 176 AGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFL 235
Query: 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQ 449
P+P+++LVNL E ++I DLL LP F ++ ++ SALGPALQAAFKL+ PTGGR+++FQ
Sbjct: 236 PTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPTGGRVSVFQ 295
Query: 450 TCLPNRGPGALQSRENPNQRSNDDP-PHMNPATDFYKKIALECTSFYIAVDLFILNSQYV 508
T LP+ G G LQSRE+PNQRS+ H+ PATDFYKK+AL+C+ AVDLF+L+SQY
Sbjct: 296 TQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYS 355
Query: 509 DLATLSGVSKFSSGCIHHIP-LYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGM 567
DLA+L+ +SK+S+GCI++ P + N S +L + RYLTRKIGFE+VMRIRCTKG+
Sbjct: 356 DLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGL 415
Query: 568 SIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRR 627
S+HTFHGNFFVRSTDLL+L N+NPDAG+ +Q+SI+E+LT CFQ A+LYTSSKG+RR
Sbjct: 416 SMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERR 475
Query: 628 IRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLST 687
IRVHTLCLPVVS++ DV G D LLA MAVDRS+ SLSDAR+A +N V D LS
Sbjct: 476 IRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSA 535
Query: 688 YKMTQAGHLTGSLLAPSSXXXXXXXXXXXXXHPAFRIGQSTRLDDRLFAMTEMKCLPLNS 747
Y T + +L+APSS AFR G STRLDDR++AM ++K PL
Sbjct: 536 YGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVH 595
Query: 748 LMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVR 807
LM I+P LY I L + + N+ VP P + +LSAE+L G +L++ + I V
Sbjct: 596 LMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVG 655
Query: 808 HGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKD 867
G + G+ + A +P+ + LP+L+T S + SFI++L D + + ++KD
Sbjct: 656 KGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKD 715
Query: 868 SSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901
SP + EF+ LIED+ +YYEFLL +++Q+
Sbjct: 716 ESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 749
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/633 (49%), Positives = 446/633 (70%), Gaps = 2/633 (0%)
Query: 270 EIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQ 329
++ E+FLY+ T ++G+P+RRPE+Q+AT+E++A ++Y +R PPQP +YLF+ DVS A +
Sbjct: 120 DVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYMLR-PPQPPVYLFVFDVSHNAVE 178
Query: 330 SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389
+GYL +VC+ LL+ L +PG+ RT I IT+DS +HFY L E +QP +I++DI+D+F+
Sbjct: 179 TGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGLQESLSQPQMLIVSDIEDVFI 238
Query: 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQ 449
P PEN+LVNL+E +++ DLLK LP F +L++ SALGPALQAAFKL+ PTGGR+++FQ
Sbjct: 239 PMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLMSPTGGRMSVFQ 298
Query: 450 TCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 509
T LP G GAL+ RE PN RS+ HM P+TDFYKK+AL+C+ +AVDLF+L+ QY D
Sbjct: 299 TQLPTLGVGALKPREEPNHRSSAKDIHMTPSTDFYKKLALDCSGQQVAVDLFLLSGQYSD 358
Query: 510 LATLSGVSKFSSGCIHHIPLYSGK-NMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMS 568
LA+L +S++S+G +++ P Y + N V +L + RYLTRKIGFE+VMRIRCTKG+S
Sbjct: 359 LASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTKGLS 418
Query: 569 IHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRI 628
IHTFHGNFFVRSTDLL+LPNVNPDAGY +Q+S++E+LT Q FQ A+LYTSSKG+RRI
Sbjct: 419 IHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRI 478
Query: 629 RVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTY 688
RVHTLCLPVVS +NDV +GAD I+GLLA MAVDRS+ SLSDAR+A +N V D LS Y
Sbjct: 479 RVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVDRSMTASLSDARDALVNAVIDSLSAY 538
Query: 689 KMTQAGHLTGSLLAPSSXXXXXXXXXXXXXHPAFRIGQSTRLDDRLFAMTEMKCLPLNSL 748
+ + + L+ P S +F+ G + RLD+R+FAM ++K PL L
Sbjct: 539 RSSVLSNQQPGLMVPFSLRLFPLFVLALLKQKSFQTGTNARLDERIFAMCQVKNQPLVYL 598
Query: 749 MLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRH 808
ML+ +P LY + L + + ++ +P P ILQLS E+L G +L++ ++++ V
Sbjct: 599 MLTTHPSLYRVDNLSDEGALNISDRTIPQPPILQLSVEKLSRDGAFLMDAGSVLMLWVGK 658
Query: 809 GTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDS 868
+ S + G Q+ A +P+ + +LP+L+T S ++ +FIS+L + + + + VI+D
Sbjct: 659 NCTQNFLSQVLGVQNYASIPQPMTDLPELDTPESARIIAFISWLREQRPFFPILYVIRDE 718
Query: 869 SPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901
SP + F +IED+ ++YYEFLL I++QV
Sbjct: 719 SPMKANFLQNMIEDRTESALSYYEFLLHIQQQV 751
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/633 (49%), Positives = 445/633 (70%), Gaps = 2/633 (0%)
Query: 270 EIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQ 329
++ E+FLY+ T ++G+P+RRPE+Q+AT+E++A ++Y +R PPQP +YLF+ DVS A +
Sbjct: 115 DVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYMLR-PPQPPVYLFVFDVSHNAVE 173
Query: 330 SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389
+GYL +VC+ LL+ L +PG+ RT I IT+DS +HFY L E +QP +I++DI+D+F+
Sbjct: 174 TGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGLQESLSQPQMLIVSDIEDVFI 233
Query: 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQ 449
P PEN+LVNL+E +++ DLLK LP F +L++ SALGPALQAAFKL+ PTGGR+++FQ
Sbjct: 234 PMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLMSPTGGRMSVFQ 293
Query: 450 TCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 509
T LP G GAL+ RE PN RS+ HM P+TDFYKK+AL+C+ +AVDLF+L+ QY D
Sbjct: 294 TQLPTLGVGALKPREEPNHRSSAKDIHMTPSTDFYKKLALDCSGQQVAVDLFLLSGQYSD 353
Query: 510 LATLSGVSKFSSGCIHHIPLYSGK-NMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMS 568
LA+L +S++S+G +++ P Y + N V +L + RYLTRKIGFE+VMRIRCTKG+S
Sbjct: 354 LASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTKGLS 413
Query: 569 IHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRI 628
IHTFHGNFFVRSTDLL+LPNVNPDAGY +Q+S++E+LT Q FQ A+LYTSSKG+RRI
Sbjct: 414 IHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRI 473
Query: 629 RVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTY 688
RVHTLCLPVVS +NDV +GAD I+GLLA MAVDRS+ SLSDAR+A +N V D LS Y
Sbjct: 474 RVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVDRSMTASLSDARDALVNAVIDSLSAY 533
Query: 689 KMTQAGHLTGSLLAPSSXXXXXXXXXXXXXHPAFRIGQSTRLDDRLFAMTEMKCLPLNSL 748
+ + + L+ P S +F+ G + RLD+R+FAM ++K PL L
Sbjct: 534 RSSVLSNQQPGLMVPFSLRLFPLFVLALLKQKSFQTGTNARLDERIFAMCQVKNQPLVYL 593
Query: 749 MLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRH 808
ML+ +P LY + L + + ++ +P P ILQLS E+L G +L++ ++++ V
Sbjct: 594 MLTTHPSLYRVDNLSDEGALNISDRTIPQPPILQLSVEKLSRDGAFLMDAGSVLMLWVGK 653
Query: 809 GTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDS 868
+ S + G Q+ A +P+ + +LP+L+T S ++ +FIS+L + + + + VI D
Sbjct: 654 NCTQNFLSQVLGVQNYASIPQPMTDLPELDTPESARIIAFISWLREQRPFFPILYVIADE 713
Query: 869 SPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901
SP + F +IED+ ++YYEFLL I++QV
Sbjct: 714 SPMKANFLQNMIEDRTESALSYYEFLLHIQQQV 746
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 311 bits (798), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 200/650 (30%), Positives = 338/650 (52%), Gaps = 39/650 (6%)
Query: 288 YRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM 347
Y R EI+ A +EY+A +YT+R PP PA Y FL+DVSQ + +SG L T LL L S+
Sbjct: 278 YDRNEIKCAVMEYMAPKEYTLRQPP-PATYCFLIDVSQSSIKSGLLATTINTLLQNLDSI 336
Query: 348 PG-DRRTSIAIITYDSAVHFYSL-------AEGQTQPSQMILTDIDDIFLPSPENILVNL 399
P D RT I+I+ D+A+H++ + E Q + M + D+++ FLP P +++V+L
Sbjct: 337 PNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSL 396
Query: 400 SECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGA 459
C I LL ++P F+ +L + ALGPAL++A+ L+ GG+I + LPN G G
Sbjct: 397 KACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGK 456
Query: 460 LQSRENPN--QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVS 517
LQ R S + ++ FYK ++C+ I VDLF+ + Y+D+A+LS +S
Sbjct: 457 LQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLS 516
Query: 518 KFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFF 577
+F++G H P +SGKN + + + F+++++ E+VMR R + G+ + F+G+FF
Sbjct: 517 RFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFF 576
Query: 578 VRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPV 637
RS+DL A + D Y ++++DE++ Y QVAVL + + RRIR+ TL +P
Sbjct: 577 NRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPT 635
Query: 638 VSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLT 697
++ +V ADQ IA AV+++L SL DAR V D+L+TYK T
Sbjct: 636 TESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNT 695
Query: 698 GS---LLAPSSXXXXXXXXXXXXXHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYP 754
L ++ H AFR G D R A+ ++ LPL L+ +IYP
Sbjct: 696 AGGAPLRLCANLRMFPLLMHSLTKHMAFRSGIVPS-DHRASALNNLESLPLKYLIKNIYP 754
Query: 755 ELYPIHTLDQDPTI----EWNEL--QVPIPRILQLSAERLQATGTYLLNMPDLIIILVRH 808
++Y +H + + + E E + +P+ + ++ + G YL++ + + + +
Sbjct: 755 DVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGG 814
Query: 809 GTSPAICSGLFGFQSVAQMPETLFELPQLE-TQLSLKLNSFISYL--NDDKAYVSPVKVI 865
PA+ +FG Q + +P E+P +E ++ + ++ + I+ L +DD + ++
Sbjct: 815 DAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIV 874
Query: 866 KDSSPD--------------RMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901
+ +S R+ L+EDK +Y EFL ++ ++
Sbjct: 875 RGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYREFLQIMKARI 924
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 310 bits (795), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 200/650 (30%), Positives = 338/650 (52%), Gaps = 39/650 (6%)
Query: 288 YRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM 347
Y R EI+ A +EY+A +YT+R PP PA Y FL+DVSQ + +SG L T LL L S+
Sbjct: 162 YDRNEIKCAVMEYMAPKEYTLRQPP-PATYCFLIDVSQSSIKSGLLATTINTLLQNLDSI 220
Query: 348 PG-DRRTSIAIITYDSAVHFYSL-------AEGQTQPSQMILTDIDDIFLPSPENILVNL 399
P D RT I+I+ D+A+H++ + E Q + M + D+++ FLP P +++V+L
Sbjct: 221 PNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSL 280
Query: 400 SECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGA 459
C I LL ++P F+ +L + ALGPAL++A+ L+ GG+I + LPN G G
Sbjct: 281 KACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGK 340
Query: 460 LQSRENPN--QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVS 517
LQ R S + ++ FYK ++C+ I VDLF+ + Y+D+A+LS +S
Sbjct: 341 LQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLS 400
Query: 518 KFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFF 577
+F++G H P +SGKN + + + F+++++ E+VMR R + G+ + F+G+FF
Sbjct: 401 RFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFF 460
Query: 578 VRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPV 637
RS+DL A + D Y ++++DE++ Y QVAVL + + RRIR+ TL +P
Sbjct: 461 NRSSDLCAFSTMPRDQSYLFEVNVDESIMA-DYCYVQVAVLLSLNNSQRRIRIITLAMPT 519
Query: 638 VSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLT 697
++ +V ADQ IA AV+++L SL DAR V D+L+TYK T
Sbjct: 520 TESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNT 579
Query: 698 GS---LLAPSSXXXXXXXXXXXXXHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYP 754
L ++ H AFR G D R A+ ++ LPL L+ +IYP
Sbjct: 580 AGGAPLRLCANLRMFPLLMHSLTKHMAFRSGIVPS-DHRASALNNLESLPLKYLIKNIYP 638
Query: 755 ELYPIHTLDQDPTI----EWNEL--QVPIPRILQLSAERLQATGTYLLNMPDLIIILVRH 808
++Y +H + + + E E + +P+ + ++ + G YL++ + + + +
Sbjct: 639 DVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGG 698
Query: 809 GTSPAICSGLFGFQSVAQMPETLFELPQLE-TQLSLKLNSFISYL--NDDKAYVSPVKVI 865
PA+ +FG Q + +P E+P +E ++ + ++ + I+ L +DD + ++
Sbjct: 699 DAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIV 758
Query: 866 KDSSPD--------------RMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901
+ +S R+ L+EDK +Y EFL ++ ++
Sbjct: 759 RGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYREFLQIMKARI 808
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 259 bits (662), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 172/628 (27%), Positives = 297/628 (47%), Gaps = 22/628 (3%)
Query: 286 DPYRRPEIQSATVEYLATADYTVRDP-PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQL 344
D Y RPE+ + E+LAT DY + P P ++F++DVS A ++G + +CE L + L
Sbjct: 144 DAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLL 203
Query: 345 KSMP---GDRRTSIAI--ITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNL 399
+P G ++I + +TY+ +HFY++ QP M+++D+ D+F+P + LVN+
Sbjct: 204 DFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVNV 263
Query: 400 SECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP--TGGRITIFQTCLP-NRG 456
+E +I LL Q+P F D+ ++ + P +QA + L+ G++ +F T LP
Sbjct: 264 NESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEA 323
Query: 457 PGALQSRENPNQRSNDDPPHM-NPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSG 515
PG L++R++ + D + P T Y+ +A EC + VDLF+ +QYVD+ATLS
Sbjct: 324 PGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSV 383
Query: 516 VSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGN 575
V + + G ++ + +N + D R + + +GF++VMR+R + G+ F G
Sbjct: 384 VPQLTGGSVYKYASFQVENDQERFLSD--LRRDVQKVVGFDAVMRVRTSTGIRAVDFFGA 441
Query: 576 FFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCL 635
F++ +T + L ++ D ++ D+ L A Q A+LYTS G RR+R+H L L
Sbjct: 442 FYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLAL 501
Query: 636 PVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAG- 694
+ + D+ + + +AK A L + R+ + +L+ Y+ A
Sbjct: 502 NCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASP 561
Query: 695 HLTGSLLAPSSXXXXXXXXXXXXXHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYP 754
G L+ P + G DDR + + + + + YP
Sbjct: 562 SSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYP 621
Query: 755 ELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAI 814
L P+ + T E P ++ S ERL YLL + + V +
Sbjct: 622 RLLPLTKSPVESTTE--------PPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGV 673
Query: 815 CSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRME 874
LF S +Q+ L LP L+ LS K+ I L ++ + V+K M
Sbjct: 674 VQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEML 733
Query: 875 FYDKLIEDKN-AGGMAYYEFLLRIREQV 901
F L+EDK+ +GG +Y +FL + +++
Sbjct: 734 FKHFLVEDKSLSGGASYVDFLCHMHKEI 761
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 171/633 (27%), Positives = 294/633 (46%), Gaps = 32/633 (5%)
Query: 286 DPYRRPEIQSATVEYLATADYTVR-DPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQL 344
D Y +PE+ + EY+AT DY + PP P ++F++DVS ++G + +CE L L
Sbjct: 148 DHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTML 207
Query: 345 KSMPGDRRTS-----IAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNL 399
+ +P + + + ITY+ +HF+++ QP M++TD+ ++F+P + LVN
Sbjct: 208 EKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNY 267
Query: 400 SECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG--GRITIFQTCLPN-RG 456
E +I +LL Q+P F DS ++ + P +QA + L+ G++ IF + LP
Sbjct: 268 QESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEA 327
Query: 457 PGALQSRENPNQRSNDDPPHM-NPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSG 515
PG L++R++ + D + P T+ Y +A +C + +V LF+ SQYVD+A+L
Sbjct: 328 PGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGL 387
Query: 516 VSKFSSGCIHHIPLYSGKNMSHVYQLDRM-----FSRYLTRKIGFESVMRIRCTKGMSIH 570
V + + G LY N LDR + +KIGF+++MR+R + G
Sbjct: 388 VPQLTGG-----TLYKYNNFQ--MHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRAT 440
Query: 571 TFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRV 630
F G + +T + + ++ D ++ D+ L+ A Q AVLYT+ G RR+R+
Sbjct: 441 DFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRI 500
Query: 631 HTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKM 690
H L L S + D+ + + AK A L L RE +N +L+ Y+
Sbjct: 501 HNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRK 560
Query: 691 TQAGHLTGS-LLAPSSXXXXXXXXXXXXXHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLM 749
A S L+ P S + D+R + + + +
Sbjct: 561 NCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQ 620
Query: 750 LSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHG 809
L YP+L PIHTLD T+ +P ++ S RL G +LL + + +
Sbjct: 621 LFFYPQLLPIHTLDVKSTM--------LPAAVRCSESRLSEEGIFLLANGLHMFLWLGVS 672
Query: 810 TSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSS 869
+ P + G+F S A + + LP++ S +L + + + Y + ++K
Sbjct: 673 SPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQRE 732
Query: 870 PDRMEFYDKLIEDKNA-GGMAYYEFLLRIREQV 901
M F L+EDK GG +Y +FL + +++
Sbjct: 733 QPEMVFRQFLVEDKGLYGGSSYVDFLCCVHKEI 765
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 92/459 (20%), Positives = 172/459 (37%), Gaps = 107/459 (23%)
Query: 292 EIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDR 351
E+QS T+EY+ TV P ++ F++D++ +++ L ++ E ++ L +P +
Sbjct: 104 ELQSTTIEYITNKPVTV-----PPIFFFVVDLT---SETENLDSLKESIITSLSLLPPN- 154
Query: 352 RTSIAIITYDSAVHFYSLA--------------EGQTQPSQMILT--------------- 382
I +ITY + V + L+ E Q + +LT
Sbjct: 155 -ALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLP 213
Query: 383 ---------DIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPA--- 430
++ FLP E + L++ + + +P + +GSAL A
Sbjct: 214 NAMNKVTPFSLNRFFLPL-EQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLL 272
Query: 431 LQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRE------NPNQRSNDDPPHMNPATDFY 484
LQ +K + RI +F + PG + + E + + +D H A FY
Sbjct: 273 LQGCYKNIP---ARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFY 329
Query: 485 KKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRM 544
+IA + VD+F + ++ + ++ + G + +S Y R+
Sbjct: 330 NQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYL--RL 387
Query: 545 FSR----YLTRKIGFESVMRIRCTKGMSIHTFHGN----------------FFVRSTDLL 584
F++ YL K+ F M ++ +K + + G+ + +T
Sbjct: 388 FAKDEEGYL--KMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTW 445
Query: 585 ALPNVNPDAGYGIQISIDENLT---------------HIQYACFQVAVLYTSSKGDRRIR 629
+ +++P Y I I H+ Y Q Y S G RIR
Sbjct: 446 KMASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYT--QFITTYQHSSGTNRIR 503
Query: 630 VHTLC---LPVVSNINDVLVGADQACIAGLLAKMAVDRS 665
V T+ LP + + DQ A L+A++AV ++
Sbjct: 504 VTTVANQLLPFGTPA--IAASFDQEAAAVLMARIAVHKA 540
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 92/459 (20%), Positives = 172/459 (37%), Gaps = 107/459 (23%)
Query: 292 EIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDR 351
E+QS T+EY+ TV P ++ F++D++ +++ L ++ E ++ L +P +
Sbjct: 108 ELQSTTIEYITNKPVTV-----PPIFFFVVDLT---SETENLDSLKESIITSLSLLPPN- 158
Query: 352 RTSIAIITYDSAVHFYSLA--------------EGQTQPSQMILT--------------- 382
I +ITY + V + L+ E Q + +LT
Sbjct: 159 -ALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLP 217
Query: 383 ---------DIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPA--- 430
++ FLP E + L++ + + +P + +GSAL A
Sbjct: 218 NAMNKVTPFSLNRFFLPL-EQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLL 276
Query: 431 LQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRE------NPNQRSNDDPPHMNPATDFY 484
LQ +K + RI +F + PG + + E + + +D H A FY
Sbjct: 277 LQGCYKNIP---ARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFY 333
Query: 485 KKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRM 544
+IA + VD+F + ++ + ++ + G + +S Y R+
Sbjct: 334 NQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYL--RL 391
Query: 545 FSR----YLTRKIGFESVMRIRCTKGMSIHTFHGN----------------FFVRSTDLL 584
F++ YL K+ F M ++ +K + + G+ + +T
Sbjct: 392 FAKDEEGYL--KMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTW 449
Query: 585 ALPNVNPDAGYGIQISIDENLT---------------HIQYACFQVAVLYTSSKGDRRIR 629
+ +++P Y I I H+ Y Q Y S G RIR
Sbjct: 450 KMASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYT--QFITTYQHSSGTNRIR 507
Query: 630 VHTLC---LPVVSNINDVLVGADQACIAGLLAKMAVDRS 665
V T+ LP + + DQ A L+A++AV ++
Sbjct: 508 VTTVANQLLPFGTPA--IAASFDQEAAAVLMARIAVHKA 544
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 61/314 (19%), Positives = 113/314 (35%), Gaps = 40/314 (12%)
Query: 390 PSPENILVNLSECYDM-IVDLLKQL---PGKFKDSLDSGSALGPALQAAFKLLQPT---- 441
P P N + + DM + DLL +L P + G AL A LL+ T
Sbjct: 223 PPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNT 282
Query: 442 GGRITIFQTCLPNRGPGALQSRE------NPNQRSNDDPPHMNPATDFYKKIALECTSFY 495
G RI +F +GPG + E + + D+ ++ T ++ +A +
Sbjct: 283 GARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTG 342
Query: 496 IAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR--KI 553
+D++ L + + G + ++ +Q R+F++ + K+
Sbjct: 343 HVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQ--RVFTKDMHGQFKM 400
Query: 554 GFESVMRIRCTKGMSIHTFHG---------------NFFVRSTDLLALPNVNPDAGYGIQ 598
GF + I+ ++ + I G T + ++P I
Sbjct: 401 GFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIY 460
Query: 599 ISI----DENLTHIQYACFQVAVLYTSSKGDRRIRVHTLC---LPVVSNINDVLVGADQA 651
+ + + Q Y S G RRIRV T+ + I ++ DQ
Sbjct: 461 FEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQE 520
Query: 652 CIAGLLAKMAVDRS 665
A L+A++A+ R+
Sbjct: 521 AAAILMARLAIYRA 534
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 61/314 (19%), Positives = 113/314 (35%), Gaps = 40/314 (12%)
Query: 390 PSPENILVNLSECYDM-IVDLLKQL---PGKFKDSLDSGSALGPALQAAFKLLQPT---- 441
P P N + + DM + DLL +L P + G AL A LL+ T
Sbjct: 227 PPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNT 286
Query: 442 GGRITIFQTCLPNRGPGALQSRE------NPNQRSNDDPPHMNPATDFYKKIALECTSFY 495
G RI +F +GPG + E + + D+ ++ T ++ +A +
Sbjct: 287 GARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTG 346
Query: 496 IAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR--KI 553
+D++ L + + G + ++ +Q R+F++ + K+
Sbjct: 347 HVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQ--RVFTKDMHGQFKM 404
Query: 554 GFESVMRIRCTKGMSIHTFHG---------------NFFVRSTDLLALPNVNPDAGYGIQ 598
GF + I+ ++ + I G T + ++P I
Sbjct: 405 GFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIY 464
Query: 599 ISI----DENLTHIQYACFQVAVLYTSSKGDRRIRVHTLC---LPVVSNINDVLVGADQA 651
+ + + Q Y S G RRIRV T+ + I ++ DQ
Sbjct: 465 FEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQE 524
Query: 652 CIAGLLAKMAVDRS 665
A L+A++A+ R+
Sbjct: 525 AAAILMARLAIYRA 538
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 61/314 (19%), Positives = 113/314 (35%), Gaps = 40/314 (12%)
Query: 390 PSPENILVNLSECYDM-IVDLLKQL---PGKFKDSLDSGSALGPALQAAFKLLQPT---- 441
P P N + + DM + DLL +L P + G AL A LL+ T
Sbjct: 223 PPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNT 282
Query: 442 GGRITIFQTCLPNRGPGALQSRE------NPNQRSNDDPPHMNPATDFYKKIALECTSFY 495
G RI +F +GPG + E + + D+ ++ T ++ +A +
Sbjct: 283 GARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTG 342
Query: 496 IAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR--KI 553
+D++ L + + G + ++ +Q R+F++ + K+
Sbjct: 343 HVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQ--RVFTKDMHGQFKM 400
Query: 554 GFESVMRIRCTKGMSIHTFHG---------------NFFVRSTDLLALPNVNPDAGYGIQ 598
GF + I+ ++ + I G T + ++P I
Sbjct: 401 GFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIY 460
Query: 599 ISI----DENLTHIQYACFQVAVLYTSSKGDRRIRVHTLC---LPVVSNINDVLVGADQA 651
+ + + Q Y S G RRIRV T+ + I ++ DQ
Sbjct: 461 FEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQE 520
Query: 652 CIAGLLAKMAVDRS 665
A L+A++A+ R+
Sbjct: 521 AAAILMARLAIYRA 534
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,549,557
Number of Sequences: 62578
Number of extensions: 951994
Number of successful extensions: 2007
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1959
Number of HSP's gapped (non-prelim): 19
length of query: 901
length of database: 14,973,337
effective HSP length: 108
effective length of query: 793
effective length of database: 8,214,913
effective search space: 6514426009
effective search space used: 6514426009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)