Query psy12437
Match_columns 901
No_of_seqs 452 out of 1896
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 19:14:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1985|consensus 100.0 1E-135 3E-140 1144.0 67.4 633 267-901 239-885 (887)
2 KOG1984|consensus 100.0 1E-125 3E-130 1063.0 73.1 627 267-901 359-1002(1007)
3 PTZ00395 Sec24-related protein 100.0 3E-121 8E-126 1069.6 60.8 576 312-901 950-1553(1560)
4 PLN00162 transport protein sec 100.0 4E-116 8E-121 1054.2 59.9 614 245-901 39-758 (761)
5 COG5028 Vesicle coat complex C 100.0 1E-115 3E-120 973.7 57.1 624 267-901 220-859 (861)
6 KOG1986|consensus 100.0 3E-109 6E-114 917.8 54.2 617 233-901 20-741 (745)
7 COG5047 SEC23 Vesicle coat com 100.0 6.5E-99 1E-103 812.5 43.2 616 234-900 21-750 (755)
8 cd01479 Sec24-like Sec24-like: 100.0 2.4E-53 5.1E-58 448.9 25.6 241 312-552 1-243 (244)
9 cd01468 trunk_domain trunk dom 100.0 1.5E-49 3.3E-54 420.6 25.6 234 312-547 1-239 (239)
10 PF04811 Sec23_trunk: Sec23/Se 100.0 1.6E-48 3.6E-53 414.5 20.3 236 312-549 1-243 (243)
11 cd01478 Sec23-like Sec23-like: 100.0 3.3E-46 7.2E-51 397.1 21.3 224 312-546 1-266 (267)
12 PF08033 Sec23_BS: Sec23/Sec24 99.8 9E-21 2E-25 171.0 9.8 85 554-638 1-96 (96)
13 PF04815 Sec23_helical: Sec23/ 99.8 3.1E-20 6.8E-25 169.7 11.2 102 650-752 1-103 (103)
14 PRK13685 hypothetical protein; 98.7 5E-07 1.1E-11 100.5 19.1 161 313-529 87-275 (326)
15 cd01453 vWA_transcription_fact 98.6 1.1E-06 2.3E-11 89.4 16.2 163 316-547 5-177 (183)
16 cd01465 vWA_subgroup VWA subgr 98.6 2.2E-06 4.7E-11 85.9 17.2 157 316-530 2-163 (170)
17 cd01467 vWA_BatA_type VWA BatA 98.6 1.3E-06 2.9E-11 88.4 15.7 156 315-529 3-176 (180)
18 cd01451 vWA_Magnesium_chelatas 98.6 2.7E-06 5.8E-11 86.2 17.5 159 316-532 2-169 (178)
19 cd01466 vWA_C3HC4_type VWA C3H 98.5 2E-06 4.2E-11 85.1 14.4 147 317-527 3-154 (155)
20 cd01463 vWA_VGCC_like VWA Volt 98.5 3.1E-06 6.8E-11 86.6 16.4 166 311-529 10-188 (190)
21 cd01456 vWA_ywmD_type VWA ywmD 98.5 2.2E-06 4.8E-11 89.0 15.4 173 311-524 17-196 (206)
22 TIGR00868 hCaCC calcium-activa 98.4 1.2E-05 2.5E-10 97.9 21.4 167 314-548 304-476 (863)
23 TIGR03788 marine_srt_targ mari 98.3 0.00054 1.2E-08 82.7 30.2 285 311-691 268-557 (596)
24 cd01452 VWA_26S_proteasome_sub 98.3 2.3E-05 5.1E-10 79.1 15.4 143 316-520 5-161 (187)
25 cd01474 vWA_ATR ATR (Anthrax T 98.3 2.8E-05 6E-10 79.3 16.3 156 314-531 4-168 (185)
26 cd01472 vWA_collagen von Wille 98.3 2.8E-05 6.1E-10 77.5 16.0 151 317-529 3-163 (164)
27 PF13519 VWA_2: von Willebrand 98.2 1.7E-05 3.7E-10 79.0 13.0 151 317-528 2-159 (172)
28 cd01470 vWA_complement_factors 98.2 4.7E-05 1E-09 78.5 16.6 168 317-531 3-191 (198)
29 TIGR03436 acidobact_VWFA VWFA- 98.2 9.1E-05 2E-09 81.5 19.5 159 312-527 51-238 (296)
30 cd01461 vWA_interalpha_trypsin 98.2 4.7E-05 1E-09 76.2 15.4 157 314-529 2-161 (171)
31 PF13768 VWA_3: von Willebrand 98.1 6.2E-05 1.4E-09 74.2 14.0 150 317-526 3-155 (155)
32 cd01480 vWA_collagen_alpha_1-V 98.0 0.00011 2.4E-09 74.9 14.9 160 314-531 2-173 (186)
33 cd01475 vWA_Matrilin VWA_Matri 97.9 0.00024 5.2E-09 74.8 15.7 169 314-549 2-183 (224)
34 cd01450 vWFA_subfamily_ECM Von 97.9 0.00022 4.8E-09 70.2 14.5 146 317-521 3-156 (161)
35 cd01469 vWA_integrins_alpha_su 97.9 0.00037 8.1E-09 70.4 16.3 156 317-531 3-172 (177)
36 cd01471 vWA_micronemal_protein 97.9 0.00022 4.8E-09 72.6 14.7 149 317-519 3-160 (186)
37 PTZ00441 sporozoite surface pr 97.9 0.00037 8.1E-09 80.7 17.9 164 314-531 42-217 (576)
38 cd01477 vWA_F09G8-8_type VWA F 97.9 0.00018 4E-09 73.6 13.6 153 314-523 19-188 (193)
39 TIGR02031 BchD-ChlD magnesium 97.8 0.00081 1.8E-08 80.6 18.6 174 312-531 405-584 (589)
40 cd01482 vWA_collagen_alphaI-XI 97.8 0.00079 1.7E-08 67.1 15.5 150 317-528 3-162 (164)
41 PF00626 Gelsolin: Gelsolin re 97.7 6.6E-05 1.4E-09 64.4 6.4 34 777-810 4-37 (76)
42 cd01473 vWA_CTRP CTRP for CS 97.7 0.0019 4.2E-08 66.1 17.5 150 317-519 3-161 (192)
43 cd01481 vWA_collagen_alpha3-VI 97.7 0.0011 2.5E-08 66.1 15.2 151 317-530 3-165 (165)
44 cd00198 vWFA Von Willebrand fa 97.7 0.0012 2.5E-08 64.3 15.1 148 316-520 2-155 (161)
45 smart00327 VWA von Willebrand 97.6 0.0024 5.2E-08 63.7 16.1 154 315-526 2-164 (177)
46 TIGR02442 Cob-chelat-sub cobal 97.6 0.0012 2.7E-08 79.9 16.4 161 312-527 463-632 (633)
47 PRK13406 bchD magnesium chelat 97.5 0.0032 6.9E-08 74.9 18.2 167 312-532 399-572 (584)
48 PF00092 VWA: von Willebrand f 97.5 0.0011 2.5E-08 66.3 12.6 155 317-531 2-169 (178)
49 cd01476 VWA_integrin_invertebr 97.5 0.0062 1.3E-07 60.4 17.0 104 317-455 3-117 (163)
50 COG1240 ChlD Mg-chelatase subu 97.4 0.0032 7E-08 65.5 14.1 166 313-532 77-249 (261)
51 cd01464 vWA_subfamily VWA subf 97.3 0.0015 3.2E-08 66.0 10.1 138 317-518 6-159 (176)
52 PF04056 Ssl1: Ssl1-like; Int 97.2 0.0051 1.1E-07 62.3 13.3 164 320-549 1-173 (193)
53 cd01458 vWA_ku Ku70/Ku80 N-ter 97.1 0.021 4.5E-07 59.8 16.7 151 316-506 3-173 (218)
54 smart00262 GEL Gelsolin homolo 97.0 0.005 1.1E-07 54.6 9.1 34 781-814 16-49 (90)
55 cd01454 vWA_norD_type norD typ 96.9 0.022 4.8E-07 57.3 14.6 146 316-507 2-154 (174)
56 KOG2884|consensus 96.8 0.028 6.1E-07 56.4 13.9 148 316-522 5-163 (259)
57 COG4245 TerY Uncharacterized p 96.5 0.012 2.5E-07 58.0 8.6 101 314-454 4-120 (207)
58 cd01462 VWA_YIEM_type VWA YIEM 96.2 0.13 2.7E-06 50.4 14.2 129 317-506 3-135 (152)
59 COG5148 RPN10 26S proteasome r 95.2 0.44 9.6E-06 46.9 13.2 133 314-504 3-145 (243)
60 KOG0443|consensus 95.2 0.042 9E-07 65.2 7.2 56 751-815 617-672 (827)
61 TIGR00578 ku70 ATP-dependent D 94.9 0.57 1.2E-05 56.4 16.1 156 315-504 11-182 (584)
62 cd01460 vWA_midasin VWA_Midasi 94.9 0.59 1.3E-05 50.2 14.5 145 312-517 58-218 (266)
63 cd01457 vWA_ORF176_type VWA OR 94.0 0.57 1.2E-05 48.2 11.7 143 316-519 4-165 (199)
64 PF03850 Tfb4: Transcription f 93.6 3.7 8.1E-05 44.4 17.3 82 425-530 116-208 (276)
65 TIGR00627 tfb4 transcription f 93.2 4.1 9E-05 44.0 16.7 81 423-527 117-207 (279)
66 cd01455 vWA_F11C1-5a_type Von 93.1 5 0.00011 40.8 16.1 95 404-529 75-174 (191)
67 KOG4407|consensus 92.1 0.28 6.2E-06 60.7 6.8 14 554-567 927-940 (1973)
68 PF03731 Ku_N: Ku70/Ku80 N-ter 91.7 2 4.4E-05 44.9 12.1 154 316-503 1-172 (224)
69 KOG4274|consensus 90.8 1.4 3E-05 50.4 10.0 11 670-680 706-716 (742)
70 KOG2807|consensus 90.2 4.1 8.8E-05 43.8 12.2 149 314-523 60-218 (378)
71 PRK10997 yieM hypothetical pro 89.8 7.3 0.00016 45.5 15.1 149 315-529 324-475 (487)
72 KOG2353|consensus 88.1 17 0.00036 46.7 17.6 125 286-440 195-322 (1104)
73 KOG3768|consensus 87.6 8.1 0.00018 44.8 13.0 49 507-564 191-239 (888)
74 PF06707 DUF1194: Protein of u 86.4 39 0.00085 34.7 16.2 83 424-530 94-187 (205)
75 KOG0444|consensus 85.9 1.3 2.8E-05 51.8 5.7 29 781-809 639-667 (1255)
76 PF09606 Med15: ARC105 or Med1 85.7 0.24 5.3E-06 60.4 0.0 7 754-760 761-767 (799)
77 KOG1151|consensus 85.5 1.3 2.9E-05 49.6 5.4 7 433-439 351-357 (775)
78 KOG0443|consensus 81.9 3.9 8.5E-05 49.2 7.7 32 783-814 277-309 (827)
79 KOG2487|consensus 81.0 30 0.00066 36.6 12.8 42 485-529 186-227 (314)
80 PF09606 Med15: ARC105 or Med1 80.6 0.51 1.1E-05 57.7 0.0 7 682-688 680-686 (799)
81 PF11265 Med25_VWA: Mediator c 79.7 84 0.0018 32.9 16.1 101 405-526 91-204 (226)
82 KOG0444|consensus 78.8 5.5 0.00012 46.8 7.3 55 750-813 730-789 (1255)
83 COG4867 Uncharacterized protei 77.6 17 0.00037 40.6 10.3 161 314-528 463-634 (652)
84 smart00187 INB Integrin beta s 75.5 1.6E+02 0.0034 33.9 26.3 271 314-603 99-390 (423)
85 COG2425 Uncharacterized protei 74.6 9.6 0.00021 43.7 7.8 141 314-515 273-417 (437)
86 KOG4274|consensus 73.6 11 0.00023 43.6 7.7 13 668-680 707-719 (742)
87 KOG4592|consensus 69.1 43 0.00094 39.4 11.3 9 614-622 538-546 (728)
88 PF09967 DUF2201: VWA-like dom 63.3 13 0.00028 35.2 5.0 95 318-455 2-96 (126)
89 COG5242 TFB4 RNA polymerase II 58.9 2.3E+02 0.0049 29.4 13.3 82 423-529 127-214 (296)
90 PF00362 Integrin_beta: Integr 56.5 3.7E+02 0.0081 31.1 21.7 266 314-603 102-393 (426)
91 KOG4407|consensus 55.3 6.4 0.00014 49.6 1.7 18 742-759 1307-1324(1973)
92 KOG4592|consensus 54.5 41 0.00089 39.6 7.8 6 22-27 66-71 (728)
93 PF04810 zf-Sec23_Sec24: Sec23 51.1 3.8 8.3E-05 30.3 -0.6 18 267-284 23-40 (40)
94 PF02905 EBV-NA1: Epstein Barr 47.7 62 0.0013 30.1 6.3 33 333-365 112-145 (146)
95 KOG0445|consensus 37.9 36 0.00078 40.4 4.1 40 783-822 363-409 (919)
96 KOG3648|consensus 37.3 19 0.00042 42.1 1.9 9 651-659 590-598 (1179)
97 KOG3648|consensus 35.4 25 0.00054 41.2 2.3 8 484-491 564-571 (1179)
98 KOG4368|consensus 32.3 1.7E+02 0.0037 34.4 8.1 9 518-526 714-722 (757)
99 PF09770 PAT1: Topoisomerase I 29.4 18 0.00039 45.7 0.0 9 716-724 692-700 (808)
100 PF05762 VWA_CoxE: VWA domain 28.8 79 0.0017 33.0 4.7 32 421-452 126-160 (222)
101 PF09770 PAT1: Topoisomerase I 26.4 22 0.00047 44.9 0.0 7 799-805 741-747 (808)
102 COG4548 NorD Nitric oxide redu 21.2 5.2E+02 0.011 30.5 9.4 81 424-526 532-616 (637)
No 1
>KOG1985|consensus
Probab=100.00 E-value=1.2e-135 Score=1144.05 Aligned_cols=633 Identities=49% Similarity=0.832 Sum_probs=604.4
Q ss_pred CcCccCccc---------ccCCCCCCCCCCCCccccccccEEEEecccccCCCCCCCcEEEEEEEcchhHHhhchHHHHH
Q psy12437 267 NLPEIHEQF---------LYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVC 337 (901)
Q Consensus 267 ~~~~~p~~~---------~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~ 337 (901)
+.|.|..|+ .++++++.|+|...||||++++|||+||.||+.| +|+|++|||+||||..|+++|+|+.+|
T Consensus 239 r~WrCNlC~~~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR-~P~Pavy~FliDVS~~a~ksG~L~~~~ 317 (887)
T KOG1985|consen 239 RRWRCNLCGRVNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYMLR-PPQPAVYVFLIDVSISAIKSGYLETVA 317 (887)
T ss_pred ceeeechhhhhcCCcHHhhcCccccccCCcccCccccceeEEEecCcccccC-CCCCceEEEEEEeehHhhhhhHHHHHH
Confidence 566666665 4666788899999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcccchhhhHHHHHHHHHhCCccc
Q psy12437 338 EVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKF 417 (901)
Q Consensus 338 ~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~ 417 (901)
++|++.||.||+++|++|||||||++||||++..++.+|+|++++|+||+|+|.|++|||+++|||+.|+.+|+.|+++|
T Consensus 318 ~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F 397 (887)
T KOG1985|consen 318 RSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMF 397 (887)
T ss_pred HHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCC-CCCCCCCchHHHHHHHHHHHhhCCc
Q psy12437 418 KDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSN-DDPPHMNPATDFYKKIALECTSFYI 496 (901)
Q Consensus 418 ~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~-~~~~~~~~a~~fY~~la~~~~~~~i 496 (901)
.+++..++|+|+||++|.++|+.+||||++|.+++||.|.|+|+.||+++.++. ++..++.+++.|||+||.+|++.+|
T Consensus 398 ~~~~~t~~alGpALkaaf~li~~~GGri~vf~s~lPnlG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI 477 (887)
T KOG1985|consen 398 QDTRSTGSALGPALKAAFNLIGSTGGRISVFQSTLPNLGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQI 477 (887)
T ss_pred hhccCcccccCHHHHHHHHHHhhcCCeEEEEeccCCCCCccccccccccccccchhhhhccCCCchHHHHHHHHhccCce
Confidence 999999999999999999999999999999999999999999999998887655 4567999999999999999999999
Q ss_pred EEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhcccccceeEEEEecCCceEEEEecce
Q psy12437 497 AVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNF 576 (901)
Q Consensus 497 svdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~S~gl~i~~~~G~~ 576 (901)
+||+|+++.+|.|||+|+.|+++|||.+|||++|+.+++.+..+|.+||.|+|+|++||+|+||||||+|++++++||||
T Consensus 478 ~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f~~s~p~~~~Kf~~el~r~Ltr~~~feaVmRiR~S~gl~~~~f~GnF 557 (887)
T KOG1985|consen 478 CVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSFDGSNPHDVLKFARELARYLTRKIGFEAVMRIRCSTGLRMSSFFGNF 557 (887)
T ss_pred EEEEEeecccccchhhhhccccccCceeEEccCCCCCCHHHHHHHHHHHHHHhhhhhhhheeEEeeccccccccceeccc
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred eccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhccCHHHHHHH
Q psy12437 577 FVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGL 656 (901)
Q Consensus 577 ~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~a~~~~ 656 (901)
+.|++|++.++++++|.+++|++++++.+.. ...+||.|++||.+.|||||||||+++++++++.+||+++|++|++.+
T Consensus 558 F~RStDLla~~~v~~D~sy~~qisiEesl~~-~~~~fQvAlLyT~~~GERRIRV~T~~lpt~~sl~evY~saD~~AI~~l 636 (887)
T KOG1985|consen 558 FVRSTDLLALPNVNPDQSYAFQISIEESLTT-GFCVFQVALLYTLSKGERRIRVHTLCLPTVSSLNEVYASADQEAIASL 636 (887)
T ss_pred ccCcHHHhcccCCCCCccceEEEEeehhcCC-ceeEEEeeeeecccCCceeEEEEEeeccccccHHHHHhhcCHHHHHHH
Confidence 9999999999999999999999999999874 567799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCccccCcccCcHHHHHHHHhcCccccCCCCCChhHHH
Q psy12437 657 LAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHL--TGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRL 734 (901)
Q Consensus 657 lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~--~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~ 734 (901)
++++|+++.++.++.|+|+.|.+.+++++..|++.....+ ...|.+|.+|++||+|+++|+|+++||.+..++.|+|+
T Consensus 637 la~~Av~ksl~ssL~dardal~~~~~D~l~aYk~~~~~~~~~~~~l~~p~~LrllPllvlALlK~~~fr~g~~~~lD~R~ 716 (887)
T KOG1985|consen 637 LAKKAVEKSLSSSLSDARDALTNAVVDILNAYKKLVSNQNGQGITLSLPASLRLLPLLVLALLKHPAFRPGTGTRLDYRA 716 (887)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCcceecCcchhhhHHHHHHHhcCCcccCCCCCCchHHH
Confidence 9999999999999999999999999999999999765432 22499999999999999999999999999899999999
Q ss_pred HHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHH
Q psy12437 735 FAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAI 814 (901)
Q Consensus 735 ~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~ 814 (901)
|+++.++++++..++.+|||+||++|+++.+++....++.+++|+.++|+.+.++..|+||||+|..++||||+++++.+
T Consensus 717 ~a~~~~~~lpl~~L~k~IYP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~l 796 (887)
T KOG1985|consen 717 YAMCLMSTLPLKYLMKYIYPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSL 796 (887)
T ss_pred HHHHHhhcCCHHHHHhhhcccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCccc
Confidence 99999999999999999999999999999988877667778899999999999999999999999999999999999999
Q ss_pred HhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCc--cHHHHHHHhcccCCCCCCCHHH
Q psy12437 815 CSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSP--DRMEFYDKLIEDKNAGGMAYYE 892 (901)
Q Consensus 815 ~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~--~~~~f~~~LvED~~~~~~Sy~~ 892 (901)
+.++||++.+.+++.++.++|++|+++++++++||.+||++|.++..++|||+++. ..++|+.+||||++.+..||.|
T Consensus 797 l~~vfg~~~~adi~~~~~~lp~~~n~~s~r~~~fI~~lR~d~~~~p~~~ivr~~~~s~~k~~f~~~lvEDrs~~~~SY~e 876 (887)
T KOG1985|consen 797 LFDVFGVSTLADIPIGKYTLPELDNEESDRVRRFIKKLRDDRTYFPNLYIVRGDDNSPLKAWFFSRLVEDRSENSPSYYE 876 (887)
T ss_pred cccccCcchHhhcccccccCcccccchhHHHHHHHHHhhcCCcccceEEEEecCCCchHHHHHHHHHHhhhhcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999996654 4789999999999999999999
Q ss_pred HHHHHHHhC
Q psy12437 893 FLLRIREQV 901 (901)
Q Consensus 893 fl~~lh~~i 901 (901)
||.|||++|
T Consensus 877 fLq~lk~qv 885 (887)
T KOG1985|consen 877 FLQHLKAQV 885 (887)
T ss_pred HHHHHHHHh
Confidence 999999986
No 2
>KOG1984|consensus
Probab=100.00 E-value=1.3e-125 Score=1062.98 Aligned_cols=627 Identities=31% Similarity=0.531 Sum_probs=591.8
Q ss_pred CcCccCcccccC--------C-C-CCCCCCCCCccccccccEEEEecccccCCC-CCCCcEEEEEEEcchhHHhhchHHH
Q psy12437 267 NLPEIHEQFLYD--------R-N-TEMFGDPYRRPEIQSATVEYLATADYTVRD-PPQPAMYLFLLDVSQIAAQSGYLYT 335 (901)
Q Consensus 267 ~~~~~p~~~~~~--------~-~-~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~-~~~pp~~vFvID~s~~a~~~g~l~~ 335 (901)
+.|.|++|-..| + . .++|.|.++||||+.|||||+|+++|+.+. ++.||+|||+||||++|+++|.+.+
T Consensus 359 r~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~erpEL~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVSy~Ai~~G~~~a 438 (1007)
T KOG1984|consen 359 RKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEERPELCLGTVDFVATKDYCRKTKPPKPPAFVFMIDVSYNAISNGAVKA 438 (1007)
T ss_pred ceEEecCCCccccCChhhcccCCCcccccccccCchhcccccceeeehhhhhcCCCCCCceEEEEEEeehhhhhcchHHH
Confidence 568888886432 2 2 356789999999999999999999999774 8999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-CCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcccchhhhHHHHHHHHHhCC
Q psy12437 336 VCEVLLNQLKSMP-GDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLP 414 (901)
Q Consensus 336 ~~~si~~~L~~lp-~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~lv~l~e~~~~i~~lL~~L~ 414 (901)
+|++|+..|+.++ ++++++|||||||++|||||++..+.+++|+||+|++|+|+|+.+++||+..||+..|+.||++|+
T Consensus 439 ~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip 518 (1007)
T KOG1984|consen 439 ACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFVPFLDGLFVNPNESRKVIELLLDSIP 518 (1007)
T ss_pred HHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeecccccccccccCeeccchHHHHHHHHHHHHhh
Confidence 9999999999998 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcHHHHHHHHHHhhcCC-CCEEEEEecCCCCCCCC-cccCCCCCCCCCC-CCCCCCCchHHHHHHHHHHH
Q psy12437 415 GKFKDSLDSGSALGPALQAAFKLLQPT-GGRITIFQTCLPNRGPG-ALQSRENPNQRSN-DDPPHMNPATDFYKKIALEC 491 (901)
Q Consensus 415 ~~~~~~~~~~~~~G~AL~~A~~ll~~~-GGrI~~F~~g~pt~GpG-~l~~~~~~~~~~~-~~~~~~~~a~~fY~~la~~~ 491 (901)
.+|.+++.+++|+|+||++|..+|+.. |||+++|++..||.|.| ++..|+|.....+ ||++++.++++.|++||++|
T Consensus 519 ~mf~~sk~pes~~g~alqaa~lalk~~~gGKl~vF~s~Lpt~g~g~kl~~r~D~~l~~t~kek~l~~pq~~~y~~LA~e~ 598 (1007)
T KOG1984|consen 519 TMFQDSKIPESVFGSALQAAKLALKAADGGKLFVFHSVLPTAGAGGKLSNRDDRRLIGTDKEKNLLQPQDKTYTTLAKEF 598 (1007)
T ss_pred hhhccCCCCchhHHHHHHHHHHHHhccCCceEEEEecccccccCcccccccchhhhhcccchhhccCcchhHHHHHHHHH
Confidence 999999999999999999999999987 99999999999999977 8888877666544 77889999999999999999
Q ss_pred hhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhcccccceeEEEEecCCceEEE
Q psy12437 492 TSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHT 571 (901)
Q Consensus 492 ~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~S~gl~i~~ 571 (901)
++.|||||||+++..|+|+|+++.+++.|||.+|+|..|.. ..|..+|.+||.+.++++.||+|+||||||.||++.+
T Consensus 599 v~~g~svDlF~t~~ayvDvAtlg~v~~~TgG~vy~Y~~F~a--~~D~~rl~nDL~~~vtk~~gf~a~mrvRtStGirv~~ 676 (1007)
T KOG1984|consen 599 VESGCSVDLFLTPNAYVDVATLGVVPALTGGQVYKYYPFQA--LTDGPRLLNDLVRNVTKKQGFDAVMRVRTSTGIRVQD 676 (1007)
T ss_pred HHhCceEEEEEcccceeeeeeecccccccCceeEEecchhh--cccHHHHHHHHHHhcccceeeeeEEEEeecCceeeee
Confidence 99999999999999999999999999999999999999996 4688999999999999999999999999999999999
Q ss_pred EecceeccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhccCHH
Q psy12437 572 FHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQA 651 (901)
Q Consensus 572 ~~G~~~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~ 651 (901)
|+|||..+++.+++|+.+|.|++++++|+||++|.++..++||+|++||+.+|+|||||+|+++++|+.+.++|+++|.|
T Consensus 677 f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl~~ts~l~~lyr~~~~d 756 (1007)
T KOG1984|consen 677 FYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQDGSDVHFQTALLYTTIDGQRRLRVLNLSLAVTSQLSELYRSADTD 756 (1007)
T ss_pred eechhhhcCCCCccccccccCceeEEEEeccccccCCcceeEEEEEEEeccCCceeEEEEecchhhhhhHHHHHHhcCcc
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ccccCcccCcHHHHHHHHhcCccccCCCCCCh
Q psy12437 652 CIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG-SLLAPSSLKVLPLYVLALLKHPAFRIGQSTRL 730 (901)
Q Consensus 652 a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~ 730 (901)
+++++|+|.|+..+..+.++++|+.|++.|+++|+.||+.|++..++ +|+|||+||+||+||++|+||.+|+. ..++.
T Consensus 757 ~l~a~maK~a~~~i~~~~lk~vre~l~~~~~~iL~~YRk~cas~~ssgQLILPeslKLlPly~la~lKs~~l~~-~~~~~ 835 (1007)
T KOG1984|consen 757 PLIAIMAKQAAKAILDKPLKEVREQLVSQCAQILASYRKNCASPASSGQLILPESLKLLPLYMLALLKSSALRP-QEIRT 835 (1007)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccEechhhhHHHHHHHHHHHHhhcccc-ccccc
Confidence 99999999999999999999999999999999999999999986655 59999999999999999999999998 48999
Q ss_pred hHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCC
Q psy12437 731 DDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGT 810 (901)
Q Consensus 731 Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v 810 (901)
|+|+|.+.++.++++.+++.++||+|+++|+++.+... +..+|..+|+|.+.|+.+||||||||.++|||||+++
T Consensus 836 DdRi~~~~~v~sl~v~~~~~~~YPrl~p~hdl~i~dtl-----~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv 910 (1007)
T KOG1984|consen 836 DDRIYQLQLVTSLSVEQLMPFFYPRLLPFHDLDIEDTL-----EFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESV 910 (1007)
T ss_pred chhHHHHHHhhcccHHhhhhhhccceeeeecccccccc-----ccccccceecchhhccCCceEEEecCcEEEEEecCCC
Confidence 99999999999999999999999999999999876422 2356778999999999999999999999999999999
Q ss_pred ChHHHhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCcc-HHHHHHHhcccCCCCCCC
Q psy12437 811 SPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPD-RMEFYDKLIEDKNAGGMA 889 (901)
Q Consensus 811 ~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~~-~~~f~~~LvED~~~~~~S 889 (901)
++.++|+||+|.+.++++..+..||++||.+|+++|++|..++..|..++|+.+++++.+. +..|.+.|+||++....|
T Consensus 911 ~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~~r~~~l~v~~~k~g~~~~~~~~~~~lved~~~~~~s 990 (1007)
T KOG1984|consen 911 DPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRRQRSSELPVVLVKQGLDGSEVEFSEYLVEDRGRNISS 990 (1007)
T ss_pred CHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHHHHhccccccccEEEecCCCchhhhhhhhhhcccccCccc
Confidence 9999999999999999998889999999999999999999999988889999999998765 567779999999999999
Q ss_pred HHHHHHHHHHhC
Q psy12437 890 YYEFLLRIREQV 901 (901)
Q Consensus 890 y~~fl~~lh~~i 901 (901)
|.||||.|||+|
T Consensus 991 Y~dyL~~~H~ki 1002 (1007)
T KOG1984|consen 991 YVDYLCELHKKI 1002 (1007)
T ss_pred cchHHHHHHHHH
Confidence 999999999986
No 3
>PTZ00395 Sec24-related protein; Provisional
Probab=100.00 E-value=3.5e-121 Score=1069.63 Aligned_cols=576 Identities=24% Similarity=0.390 Sum_probs=529.4
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCC-------------CCCCce
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEG-------------QTQPSQ 378 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~-------------~~~~~~ 378 (901)
++||+|+||||||+.|+++|++.++|++|+++|+.|+ +.|+||||||||+.||||+|+.+ +.+|+|
T Consensus 950 p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~-dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQM 1028 (1560)
T PTZ00395 950 MLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVK-CPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQV 1028 (1560)
T ss_pred CCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCC-CCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceE
Confidence 7899999999999999999999999999999999997 56899999999999999999764 468999
Q ss_pred eeccCccccCCCCC-CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC--CEEEEEecCCCCC
Q psy12437 379 MILTDIDDIFLPSP-ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG--GRITIFQTCLPNR 455 (901)
Q Consensus 379 ~v~~dl~d~f~p~~-~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G--GrI~~F~~g~pt~ 455 (901)
+||+||||+|+|+| ++|||++.|+++.|+.||+.|+++|......++|+|+||++|..+|+..| |||++|.+++|++
T Consensus 1029 LVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~SSLPni 1108 (1560)
T PTZ00395 1029 IVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLGSICMFYTTTPNC 1108 (1560)
T ss_pred EeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCceEEEEEcCCCCC
Confidence 99999999999998 89999999999999999999999998888999999999999999999876 9999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccC--chhhhhccccCCceEEEeCCCCCC
Q psy12437 456 GPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD--LATLSGVSKFSSGCIHHIPLYSGK 533 (901)
Q Consensus 456 GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~--l~~l~~l~~~TGG~v~~y~~f~~~ 533 (901)
|||+|+.+++ ..++..++.+.++||++||.+|++.+|+||||+++..++| |++|+.||+.|||.+++|+.|+.
T Consensus 1109 GpGaLK~Re~----~~KEk~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsqYvDVDVATLg~Lsr~TGGqlyyYPnFna- 1183 (1560)
T PTZ00395 1109 GIGAIKELKK----DLQENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSNNVRVCVPSLQYVAQNTGGKILFVENFLW- 1183 (1560)
T ss_pred CCCccccccc----ccccccccccchHHHHHHHHHHHhcCCceEEEEccCcccccccccccchhcccceeEEEeCCCcc-
Confidence 9999987642 2255667888999999999999999999999999999876 79999999999999999999996
Q ss_pred cchhHHHHHHHHHHhhhc-ccccceeEEEEecCCceEEEEe--ccee--ccCCCceeecCCCCCceEEEEEEEecccCCC
Q psy12437 534 NMSHVYQLDRMFSRYLTR-KIGFESVMRIRCTKGMSIHTFH--GNFF--VRSTDLLALPNVNPDAGYGIQISIDENLTHI 608 (901)
Q Consensus 534 ~~~~~~~~~~dl~~~l~~-~~g~~a~l~vr~S~gl~i~~~~--G~~~--~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~ 608 (901)
..+..+|..+|.+.|++ ++||+|+||||||+||+|.++| |+++ .++++++.|+.+++|++|+|+|++++++...
T Consensus 1184 -~rD~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~~~ 1262 (1560)
T PTZ00395 1184 -QKDYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISESK 1262 (1560)
T ss_pred -cccHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccCCC
Confidence 35788999999999987 6999999999999999999999 4555 4578999999999999999999999999877
Q ss_pred ceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhccCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q psy12437 609 QYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTY 688 (901)
Q Consensus 609 ~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~y 688 (901)
..+|||+|||||+.+|+|||||||+++|||+++.+||+++|++|++.+|+|+++.++++. .++|+.|.+.|+++|+.|
T Consensus 1263 ~~AYFQaALLYTSssGERRIRVHTLALPVTSsLseVFrsADqdAIvslLAK~AV~~aLss--sdARe~L~dklVdILtaY 1340 (1560)
T PTZ00395 1263 KQIYFQCACIYTNLWGDRFVRLHTTHMNLTSSLSTVFRYTDAEALMNILIKQLCTNILHN--DNYSKIIIDNLAAILFSY 1340 (1560)
T ss_pred CcEEEEEEEeeccCCCcEEEEEEeeeecccCCHHHHHHhhcHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999877 489999999999999999
Q ss_pred HHhhcCCCCC-ccccCcccCcHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCC
Q psy12437 689 KMTQAGHLTG-SLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPT 767 (901)
Q Consensus 689 r~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~ 767 (901)
|++|+...++ +|+||++||+||+||++|+||++|+. .+++|+|++.+++++++++..++.+|||+||+||++..+.+
T Consensus 1341 RK~CAsssssgQLILPESLKLLPLYILSLLKS~AfRt--~I~sDeRVyaL~rL~SmPI~~Li~yLYPRLYpLHdL~~e~e 1418 (1560)
T PTZ00395 1341 RINCASSAHSGQLILPDTLKLLPLFTSSLLKHNVTKK--EILHDLKVYSLIKLLSMPIISSLLYVYPVMYVIHIKGKTNE 1418 (1560)
T ss_pred HHHhhccCCCccccchhHHHHHHHHHHHHhccccccC--CCCccHHHHHHHHHhCCCHHHHHhhhcCceEEccccccccc
Confidence 9999876555 59999999999999999999999984 57899999999999999999999999999999999854433
Q ss_pred cc--cCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcccccCCCCchHHHHHH
Q psy12437 768 IE--WNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKL 845 (901)
Q Consensus 768 ~~--~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~ 845 (901)
.. ..++.+.+|+.++||.++|+++||||||+|..||||||+.+++.++++|||+.... ..+.+||++|++++.+|
T Consensus 1419 ~d~~d~d~~ivLPp~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqLLqDLFGv~~~~---~~~~eLPelDT~iS~RV 1495 (1560)
T PTZ00395 1419 IDSMDVDDDLFIPKTIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANFAKEIVGDIPTE---KNAHELNLTDTPNAQKV 1495 (1560)
T ss_pred CCccCCCCccccCCcccchHHHhcCCcEEEEECCCEEEEEECCCCCHHHHHHHcCCCccc---cccccccCCCCHHHHHH
Confidence 21 22234668999999999999999999999999999999999999999999974222 23457899999999999
Q ss_pred HHHHHHHhhcC--CCcccEEEEeCCCccHHHHHHHhcccCCCCCCCHHHHHHHHHHhC
Q psy12437 846 NSFISYLNDDK--AYVSPVKVIKDSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901 (901)
Q Consensus 846 ~~~i~~l~~~r--~~~~p~~iv~~~~~~~~~f~~~LvED~~~~~~Sy~~fl~~lh~~i 901 (901)
|+||+.||+.| ..++|++||+++++.|.+|+.+||||++.+.+||.||||+|||+|
T Consensus 1496 rnII~~LR~~r~~~~Y~pL~IVRqgDp~E~~F~s~LVEDRs~g~~SYvDFLc~LHKqI 1553 (1560)
T PTZ00395 1496 QRIIKNLSRIHHFNKYVPLVMVAPKSNEEEHLISLCVEDKADKEYSYVNFLCFIHKLV 1553 (1560)
T ss_pred HHHHHHHHHhccCCCcceEEEEeCCCchHHHHHHhCeecCCCCCCCHHHHHHHHHHHH
Confidence 99999999875 467899999999999999999999999999999999999999986
No 4
>PLN00162 transport protein sec23; Provisional
Probab=100.00 E-value=3.7e-116 Score=1054.22 Aligned_cols=614 Identities=18% Similarity=0.247 Sum_probs=535.4
Q ss_pred CCCCCCCCCCcccCCCCCCCC---C------------CcCccCcccccCCCCCCCC---CCCCcccc--ccccEEEEecc
Q psy12437 245 LLNTRDILPATKVEPPPIRLP---Q------------NLPEIHEQFLYDRNTEMFG---DPYRRPEI--QSATVEYLATA 304 (901)
Q Consensus 245 pl~e~~~lp~~~~~Pp~~~~~---~------------~~~~~p~~~~~~~~~~~~~---d~~~rpEL--~~~tvEy~~p~ 304 (901)
|+++.+.+|.++++| ++|+ + +.|.||+|..+|.++..|. +.+.|||| .++||||++|+
T Consensus 39 Pl~~~~~vp~v~~~p--vRC~~CraylNPf~~~d~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~ 116 (761)
T PLN00162 39 PLKPLPELPVLPYDP--LRCRTCRAVLNPYCRVDFQAKIWICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPP 116 (761)
T ss_pred cCCcCCCCCcCCCCC--CccCCCcCEECCceEEecCCCEEEccCCCCCCCCchHhcccCccCCChhhcCCceeEEEECCC
Confidence 777777788898877 5554 2 7899999999999988884 56899999 89999999998
Q ss_pred cccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeecc--
Q psy12437 305 DYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILT-- 382 (901)
Q Consensus 305 ~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~-- 382 (901)
|+.+ ++.||+|+||||+|..+++ ++.++++|+.+|+.||+++ +|||||||+.||||+|+.+. .++++|+.
T Consensus 117 -~~~~-~~~pp~fvFvID~s~~~~~---l~~lk~sl~~~L~~LP~~a--~VGlITF~s~V~~~~L~~~~-~~~~~Vf~g~ 188 (761)
T PLN00162 117 -GSGG-APSPPVFVFVVDTCMIEEE---LGALKSALLQAIALLPENA--LVGLITFGTHVHVHELGFSE-CSKSYVFRGN 188 (761)
T ss_pred -CCCC-CCCCcEEEEEEecchhHHH---HHHHHHHHHHHHHhCCCCC--EEEEEEECCEEEEEEcCCCC-CcceEEecCC
Confidence 8877 8999999999999999887 6778899999999999887 99999999999999998654 57777764
Q ss_pred ------Cccc----------------------cCCCCCCCcccchhhhHHHHHHHHHhCCcc-c--cCCCCCCCcHHHHH
Q psy12437 383 ------DIDD----------------------IFLPSPENILVNLSECYDMIVDLLKQLPGK-F--KDSLDSGSALGPAL 431 (901)
Q Consensus 383 ------dl~d----------------------~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~-~--~~~~~~~~~~G~AL 431 (901)
|+++ .|.|.+++||++++||++.|+++||+|+.. | ..++++.||+|+||
T Consensus 189 k~~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL 268 (761)
T PLN00162 189 KEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAAL 268 (761)
T ss_pred ccCCHHHHHHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHH
Confidence 2211 234566899999999999999999999964 3 56789999999999
Q ss_pred HHHHHhhc----CCCCEEEEEecCCCCCCCCcccCCCCCCC-CCCCC-----CCCCCchHHHHHHHHHHHhhCCcEEEEE
Q psy12437 432 QAAFKLLQ----PTGGRITIFQTCLPNRGPGALQSRENPNQ-RSNDD-----PPHMNPATDFYKKIALECTSFYIAVDLF 501 (901)
Q Consensus 432 ~~A~~ll~----~~GGrI~~F~~g~pt~GpG~l~~~~~~~~-~~~~~-----~~~~~~a~~fY~~la~~~~~~~isvdlf 501 (901)
++|..+|+ .+||||++|++|+||.|||+|+.|+.... ++|++ +++++++.+||++||++|+++||+||||
T Consensus 269 ~vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF 348 (761)
T PLN00162 269 SVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVF 348 (761)
T ss_pred HHHHHHHhhccCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEE
Confidence 99999998 58999999999999999999999874432 24432 4789999999999999999999999999
Q ss_pred EecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhc------ccccceeEEEEecCCceEEEEecc
Q psy12437 502 ILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR------KIGFESVMRIRCTKGMSIHTFHGN 575 (901)
Q Consensus 502 ~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~------~~g~~a~l~vr~S~gl~i~~~~G~ 575 (901)
+++.+++||+||+.|++.|||.+++|++|+. +.|..+|.|++++ ++||+|+||||||+||+|+++|||
T Consensus 349 ~~s~dqvglaem~~l~~~TGG~v~~~~sF~~------~~f~~~l~r~~~r~~~~~~~~gf~a~~~VrtS~glkv~g~~G~ 422 (761)
T PLN00162 349 ACSLDQVGVAEMKVAVERTGGLVVLAESFGH------SVFKDSLRRVFERDGEGSLGLSFNGTFEVNCSKDVKVQGAIGP 422 (761)
T ss_pred EccccccCHHHHhhhHhhcCcEEEEeCCcCh------HHHHHHHHHHhcccccccccccceeEEEEEecCCeEEeeeEcC
Confidence 9999999999999999999999999999986 6889999998876 389999999999999999999999
Q ss_pred eec---------------cCCCceeecCCCCCceEEEEEEEeccc-----CCCceeEEEEEEEeeecCCCeEEEEEeccc
Q psy12437 576 FFV---------------RSTDLLALPNVNPDAGYGIQISIDENL-----THIQYACFQVAVLYTSSKGDRRIRVHTLCL 635 (901)
Q Consensus 576 ~~~---------------~~t~~~~l~~i~~~~s~~~~~~~~~~l-----~~~~~~~iQ~allYt~~~G~rriRV~T~~l 635 (901)
|+. ++|+.|+++++++++||+|+|++++.. .+...+||||+++||+.+|+|||||||+++
T Consensus 423 ~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~~~~~~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~ 502 (761)
T PLN00162 423 CASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQSNPQPPGQQFFLQFLTRYQHSNGQTRLRVTTVTR 502 (761)
T ss_pred cccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEccccccCCCCCCceEEEEEEEEEEcCCCCEEEEEEcccc
Confidence 862 458899999999999999999999875 345679999999999999999999999999
Q ss_pred cccc--CHHHHHhccCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCcccCcHHHHH
Q psy12437 636 PVVS--NINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSSLKVLPLYV 713 (901)
Q Consensus 636 ~vt~--~~~~v~~~~D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~~l~lp~~l~~lP~~~ 713 (901)
+++. ++.+++++||+||++++|||+++++++++++.|+++||+++|++++.+|+. +.|+.+++|+||++|++||+||
T Consensus 503 ~~~~~~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld~~li~~~~~f~~-Yrk~~~~s~~Lp~~~~~lP~f~ 581 (761)
T PLN00162 503 RWVEGSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLDRALIRLCSKFGD-YRKDDPSSFRLSPNFSLYPQFM 581 (761)
T ss_pred CccCCCCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhh-hcccCCccccCCHHHHHHHHHH
Confidence 9754 788999999999999999999999999999999999999999999999888 5677788899999999999999
Q ss_pred HHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeE
Q psy12437 714 LALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGT 793 (901)
Q Consensus 714 ~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~i 793 (901)
||||||++|+.+ |++||||+|+|+.++++++.+++.||||+||+||. ++ .|..+.||+++|++|+|
T Consensus 582 ~~LrRS~~l~~~-n~spDera~~r~~l~~~~~~~sl~mI~P~L~sy~~---------~~----~P~pv~Ld~~si~~d~i 647 (761)
T PLN00162 582 FNLRRSQFVQVF-NNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSF---------NG----PPEPVLLDVASIAADRI 647 (761)
T ss_pred HHHhhhhhccCC-CCCchHHHHHHHHHhcCCHHHHHHhhCCeEEEecC---------CC----CCcceecchhhccCCce
Confidence 999999999986 99999999999999999999999999999999992 11 34457899999999999
Q ss_pred EEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCccHH
Q psy12437 794 YLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRM 873 (901)
Q Consensus 794 yLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~~~~ 873 (901)
||||+|++|+||+|++|.+|+ +.+|++.|++... .++-+..+...+.|-.+| |+.|++|+++.++++|
T Consensus 648 lLLD~~f~vvi~~G~~ia~w~------~~~~~~~~~~~~~-----~~~l~~p~~~a~~~~~~R-fp~Pr~i~~~~~~Sqa 715 (761)
T PLN00162 648 LLLDSYFSVVIFHGSTIAQWR------KAGYHNQPEHEAF-----AQLLEAPQADAQAIIKER-FPVPRLVVCDQHGSQA 715 (761)
T ss_pred EEEeCCCEEEEEecCcccchh------hcCCCCCcchhhH-----HHHHHhHHHHHHHHHhcC-CCCCeEEEeCCCCcHH
Confidence 999999999999999999999 4555555543100 011122333344444444 8999999999999999
Q ss_pred HHHHHhcccCC---------------CCCCCHHHHHHHHHHhC
Q psy12437 874 EFYDKLIEDKN---------------AGGMAYYEFLLRIREQV 901 (901)
Q Consensus 874 ~f~~~LvED~~---------------~~~~Sy~~fl~~lh~~i 901 (901)
||+...+++.. .+++|+..|+.||+|++
T Consensus 716 Rfl~~klnPs~~~~~~~~~~~~~~~~tdd~sl~~f~~~l~~~~ 758 (761)
T PLN00162 716 RFLLAKLNPSATYNSANAMGGSDIIFTDDVSLQVFMEHLQRLA 758 (761)
T ss_pred HHHHHhcCCcccccCCCCCCCCCeeecCCcCHHHHHHHHHHHh
Confidence 99988878762 36899999999999974
No 5
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-115 Score=973.67 Aligned_cols=624 Identities=35% Similarity=0.607 Sum_probs=583.4
Q ss_pred CcCccCcccccCCC----------CCCCCCCCCccccccccEEEEecccccCCCCCCCcEEEEEEEcchhHHhhchHHHH
Q psy12437 267 NLPEIHEQFLYDRN----------TEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTV 336 (901)
Q Consensus 267 ~~~~~p~~~~~~~~----------~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~ 336 (901)
+.|.|..|-..|.+ ...|.|.+.|+||.+++|||++|++|+.| .+.||+|||+||||..++++|.+.++
T Consensus 220 ~kw~CNiC~~kN~vp~~~~~~~~~~~~r~d~~~r~El~~~vvdf~ap~~Y~~~-~p~P~~yvFlIDVS~~a~~~g~~~a~ 298 (861)
T COG5028 220 RKWRCNICRSKNDVPEGFDNPSGPNDPRSDRYSRPELKSGVVDFLAPKEYSLR-QPPPPVYVFLIDVSFEAIKNGLVKAA 298 (861)
T ss_pred cEEEEeeccccccCcccccCcCCCCCccccccccchhhceeeEEecccceeec-cCCCCEEEEEEEeehHhhhcchHHHH
Confidence 57888888754421 22356799999999999999999999999 66699999999999999999999999
Q ss_pred HHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC-CCcccchhhhHHHHHHHHHhCC
Q psy12437 337 CEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP-ENILVNLSECYDMIVDLLKQLP 414 (901)
Q Consensus 337 ~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~-~~~lv~l~e~~~~i~~lL~~L~ 414 (901)
.++|++.|+.+|+ +.|+||+||.||+.||||+++.+. ..+|++++|+|++|+|.+ ..|++++++|+..++.||+.++
T Consensus 299 ~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~-~~~~~~vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~ 377 (861)
T COG5028 299 IRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDL-DEQMLIVSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVP 377 (861)
T ss_pred HHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCC-ccceeeecccccccccCCcchhcccHHHHHHHHHHHHHHhh
Confidence 9999999999976 689999999999999999999877 337899999999999998 4689999999999999999999
Q ss_pred ccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhC
Q psy12437 415 GKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSF 494 (901)
Q Consensus 415 ~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~ 494 (901)
.+|.+++.++.|+|.||++|..|++.+||||++|.+..||.|.|+|..|+| +|..++.+.+.|||++|.+|.+.
T Consensus 378 ~If~d~~~pk~~~G~aLk~a~~l~g~~GGkii~~~stlPn~G~Gkl~~r~d------~e~~ll~c~d~fYk~~a~e~~k~ 451 (861)
T COG5028 378 RIFQDNKSPKNALGPALKAAKSLIGGTGGKIIVFLSTLPNMGIGKLQLRED------KESSLLSCKDSFYKEFAIECSKV 451 (861)
T ss_pred hhhcccCCCccccCHHHHHHHHHhhccCceEEEEeecCCCccccccccccc------chhhhccccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998876 34447889999999999999999
Q ss_pred CcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhcccccceeEEEEecCCceEEEEec
Q psy12437 495 YIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHG 574 (901)
Q Consensus 495 ~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~S~gl~i~~~~G 574 (901)
||+||+|+++.+++|+++++.||++|||.+++|++|+.+++.|..+|.+||.+++.++.||+++||||||+|+++.+|||
T Consensus 452 gIsvd~Flt~~~yidvaTls~l~~~T~G~~~~Yp~f~~~~~~d~~kl~~dL~~~ls~~~gy~~~~rvR~S~glr~s~fyG 531 (861)
T COG5028 452 GISVDLFLTSEDYIDVATLSHLCRYTGGQTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYG 531 (861)
T ss_pred cceEEEEeccccccchhhhcchhhccCcceEEcCCcccCCchhHHHHHHHHHHhhhhhhhhheeeEeeccCceehhhhhc
Confidence 99999999999999999999999999999999999998667799999999999999999999999999999999999999
Q ss_pred ceeccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhccCHHHHH
Q psy12437 575 NFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIA 654 (901)
Q Consensus 575 ~~~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~a~~ 654 (901)
|++.|+.+++.|+.++.|+|+.|+|++|+++.. ..+|||.|++||..+|+|||||.|+++++++++.++|+++|++|++
T Consensus 532 nf~~rs~dl~~F~tm~rd~Sl~~~~sid~~l~~-~~v~fQvAlL~T~~~GeRRiRVvn~s~~~ss~~~evyasadq~aIa 610 (861)
T COG5028 532 NFFNRSSDLCAFSTMPRDTSLLVEFSIDEKLMT-SDVYFQVALLYTLNDGERRIRVVNLSLPTSSSIREVYASADQLAIA 610 (861)
T ss_pred cccccCcccccccccCCCceEEEEEEecccccC-CceEEEEEEEeeccCCceEEEEEEeccccchhHHHHHHhccHHHHH
Confidence 999999999999999999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ccccCcccCcHHHHHHHHhcCccccCCCCCChhHH
Q psy12437 655 GLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG-SLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDR 733 (901)
Q Consensus 655 ~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der 733 (901)
.+|+|+|+.++.+..+.++|+.|++.++++|+.||+.+++.+.+ .++||++||+||++|++|.||.+||.+ .++.|+|
T Consensus 611 ~~lak~a~~~~~~~s~~~~r~~i~~s~~~IL~~Ykk~~~~snt~tql~Lp~nL~lLPll~lal~Ks~~~rs~-~~~sD~r 689 (861)
T COG5028 611 CILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELVKSNTSTQLPLPANLKLLPLLMLALLKSSAFRSG-STPSDIR 689 (861)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccchhhhHHHHHHHHHHhhhcccccC-CCccchh
Confidence 99999999999999999999999999999999999988776655 599999999999999999999999976 7888999
Q ss_pred HHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChH
Q psy12437 734 LFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPA 813 (901)
Q Consensus 734 ~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~ 813 (901)
++++..+.++++..+++.|||+||++|++.++.|..++ +....|..+.++.+.|+++|+||||+|.++|||+|+++++.
T Consensus 690 ~~~L~~l~~~p~~~l~~~iYP~lyalHdm~~e~~l~~~-~~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~ 768 (861)
T COG5028 690 ISALNRLTSLPLKQLMRNIYPTLYALHDMPIEAGLPDE-GLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPS 768 (861)
T ss_pred HHHHHHhhcCCHHHHHHhhccceeeecccccccCCCcc-cccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHH
Confidence 99999999999999999999999999999998876643 34567788999999999999999999999999999999999
Q ss_pred HHhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhh-cCCCcccEEEEeCCCc-c-HHHHHHHhcccCCCCCCCH
Q psy12437 814 ICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLND-DKAYVSPVKVIKDSSP-D-RMEFYDKLIEDKNAGGMAY 890 (901)
Q Consensus 814 ~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~-~r~~~~p~~iv~~~~~-~-~~~f~~~LvED~~~~~~Sy 890 (901)
+++||||++++.+|+..-..+|..++++|+++|+||+.||. .+....|+++||++++ + +.+|+..||||++.+..||
T Consensus 769 Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs~~~~~tl~lvlVR~~~d~s~~~~~~s~lVEDk~~n~~SY 848 (861)
T COG5028 769 LLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTLPLVLVRGGGDPSLRLWFFSTLVEDKTLNIPSY 848 (861)
T ss_pred HHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHhhCCCCccceEEEecCCCcchhhheehheecccccCCccH
Confidence 99999999999999988888999999999999999999998 5556688999999864 4 7899999999999999999
Q ss_pred HHHHHHHHHhC
Q psy12437 891 YEFLLRIREQV 901 (901)
Q Consensus 891 ~~fl~~lh~~i 901 (901)
-|||+.||++|
T Consensus 849 ~~yL~~lh~ki 859 (861)
T COG5028 849 LDYLQILHEKI 859 (861)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 6
>KOG1986|consensus
Probab=100.00 E-value=2.9e-109 Score=917.78 Aligned_cols=617 Identities=19% Similarity=0.283 Sum_probs=540.4
Q ss_pred cccCCCcccccc-------CCCCCCCCCCcccCCCCCCCCC---------------CcCccCcccccCCCCCCCC---CC
Q psy12437 233 GMNKMWGYEPHD-------LLNTRDILPATKVEPPPIRLPQ---------------NLPEIHEQFLYDRNTEMFG---DP 287 (901)
Q Consensus 233 ~~~~~~~~~~v~-------pl~e~~~lp~~~~~Pp~~~~~~---------------~~~~~p~~~~~~~~~~~~~---d~ 287 (901)
.++|.++.+.++ |++|++.+|+.+|+| ++|+. +.|.||+||.+|+++.+|. +.
T Consensus 20 Ps~~~~~~~~vvPla~lytPl~e~~~~~~~~y~P--~~C~~C~AvlNPyc~vd~~a~~W~CpfC~qrN~~p~~Y~~is~~ 97 (745)
T KOG1986|consen 20 PSTRAEASRTVVPLACLYTPLKERPDLPPIQYDP--LRCSKCGAVLNPYCSVDFRAKSWICPFCNQRNPFPPHYSGISEN 97 (745)
T ss_pred CCcccccccccccHHHhccccccCCCCCccCCCC--chhccchhhcCcceeecccCceEeccccccCCCCChhhcccCcc
Confidence 356888888887 789999999999999 55542 7999999999999999996 67
Q ss_pred CCcccc--ccccEEEEecccccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEE
Q psy12437 288 YRRPEI--QSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVH 365 (901)
Q Consensus 288 ~~rpEL--~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~ 365 (901)
+.|+|| .++||||++++. +..||+|+||||+|....+ |..++++|+.+|+.||+++ +|||||||+.|+
T Consensus 98 n~P~el~Pq~stvEy~l~~~-----~~~ppvf~fVvDtc~~eee---L~~LkssL~~~l~lLP~~a--lvGlItfg~~v~ 167 (745)
T KOG1986|consen 98 NLPPELLPQYSTVEYTLSPG-----RVSPPVFVFVVDTCMDEEE---LQALKSSLKQSLSLLPENA--LVGLITFGTMVQ 167 (745)
T ss_pred CCChhhcCCcceeEEecCCC-----CCCCceEEEEEeeccChHH---HHHHHHHHHHHHhhCCCcc--eEEEEEecceEE
Confidence 999999 899999999853 5569999999999998765 8899999999999999998 999999999999
Q ss_pred EEEcCCCCCCCceeeccCcc--------ccC------------CCCCCCcccchhhhHHHHHHHHHhCCc-cc--cCCCC
Q psy12437 366 FYSLAEGQTQPSQMILTDID--------DIF------------LPSPENILVNLSECYDMIVDLLKQLPG-KF--KDSLD 422 (901)
Q Consensus 366 ~y~l~~~~~~~~~~v~~dl~--------d~f------------~p~~~~~lv~l~e~~~~i~~lL~~L~~-~~--~~~~~ 422 (901)
||+|+... ..+.+|...-. |.. .....+||.|+.+|...+.++|++|.. .| ..++|
T Consensus 168 v~el~~~~-~sk~~VF~G~ke~s~~q~~~~L~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~R 246 (745)
T KOG1986|consen 168 VHELGFEE-CSKSYVFSGNKEYSAKQLLDLLGLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHR 246 (745)
T ss_pred EEEcCCCc-ccceeEEeccccccHHHHHHHhcCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99998753 44555543211 110 001247999999999999999999984 55 67899
Q ss_pred CCCcHHHHHHHHHHhhcC----CCCEEEEEecCCCCCCCCcccCCC--CCCCCCCC-----CCCCCCchHHHHHHHHHHH
Q psy12437 423 SGSALGPALQAAFKLLQP----TGGRITIFQTCLPNRGPGALQSRE--NPNQRSND-----DPPHMNPATDFYKKIALEC 491 (901)
Q Consensus 423 ~~~~~G~AL~~A~~ll~~----~GGrI~~F~~g~pt~GpG~l~~~~--~~~~~~~~-----~~~~~~~a~~fY~~la~~~ 491 (901)
+.||||+||++|+.||+. +|+||++|++||||.|||+|++++ +++| +|+ .+.|++++.|||++||+++
T Consensus 247 p~RcTG~Al~iA~~Ll~~c~p~~g~rIv~f~gGPcT~GpG~vv~~el~~piR-shhdi~~d~a~y~kKa~KfY~~La~r~ 325 (745)
T KOG1986|consen 247 PLRCTGVALSIASGLLEGCFPNTGARIVLFAGGPCTRGPGTVVSRELKEPIR-SHHDIEKDNAPYYKKAIKFYEKLAERL 325 (745)
T ss_pred cccchhHHHHHHHHHhcccCCCCcceEEEeccCCCCcCCceecchhhcCCCc-CcccccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999985 799999999999999999999987 5555 442 3588999999999999999
Q ss_pred hhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhh------cccccceeEEEEecC
Q psy12437 492 TSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLT------RKIGFESVMRIRCTK 565 (901)
Q Consensus 492 ~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~------~~~g~~a~l~vr~S~ 565 (901)
+.+|++||||+++.|++|++||+.|++.|||.+.+.++|+. +.|...++|+++ +.+||+|.|+|+||+
T Consensus 326 ~~~ghvlDifa~~lDQvGi~EMk~l~~~TGG~lvl~dsF~~------s~Fk~sfqR~f~~d~~~~l~~~fn~~leV~tSk 399 (745)
T KOG1986|consen 326 ANQGHVLDIFAAALDQVGILEMKPLVESTGGVLVLGDSFNT------SIFKQSFQRIFTRDGEGDLKMGFNGTLEVKTSK 399 (745)
T ss_pred HhCCceEeeeeeeccccchHHHHHHhhcCCcEEEEecccch------HHHHHHHHHHhccccccchhhhcCceEEEEecC
Confidence 99999999999999999999999999999999999999996 567777777776 579999999999999
Q ss_pred CceEEEEecceec---------------cCCCceeecCCCCCceEEEEEEEeccc--CCCceeEEEEEEEeeecCCCeEE
Q psy12437 566 GMSIHTFHGNFFV---------------RSTDLLALPNVNPDAGYGIQISIDENL--THIQYACFQVAVLYTSSKGDRRI 628 (901)
Q Consensus 566 gl~i~~~~G~~~~---------------~~t~~~~l~~i~~~~s~~~~~~~~~~l--~~~~~~~iQ~allYt~~~G~rri 628 (901)
+|+|++++|++.. ++|..|+++.+++.+++++.|++...- +.+..+||||++.|.+++|++|+
T Consensus 400 dlkI~g~IGp~~Sl~~k~~~vsdt~ig~g~t~~wkm~~ls~~t~~s~~fei~~~~~~~~~~~~~iQFiT~Yq~s~g~~ri 479 (745)
T KOG1986|consen 400 DLKIQGVIGPCVSLNKKGPNVSDTEIGEGNTSAWKMCGLSPSTTLSLFFEISNQHNIPQSGQGYIQFITQYQHSSGQKRI 479 (745)
T ss_pred CcEEEecccccccccCCCCccccceeccccccceeeeccCCCceEEEEEEeccccCCCCCCeeEEEEEEEEEcCCCcEEE
Confidence 9999999998862 468899999999999999999998753 34568999999999999999999
Q ss_pred EEEecccccccCH-HHHHhccCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCcccC
Q psy12437 629 RVHTLCLPVVSNI-NDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSSLK 707 (901)
Q Consensus 629 RV~T~~l~vt~~~-~~v~~~~D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~~l~lp~~l~ 707 (901)
||+|+++++++.. .++..+||+||++++|||+++.|+.+++..|+++|+|+.||++|++|+. +.|++|+++.|+++|.
T Consensus 480 RVtT~~r~~~d~~~~~i~~~FDqEaaAV~mAR~~~~kae~e~~~d~~rwlDr~Lirlc~kFg~-y~k~dPssf~l~~~fs 558 (745)
T KOG1986|consen 480 RVTTLARPWADSGSPEISQSFDQEAAAVLMARLALLKAETEDGPDVLRWLDRNLIRLCQKFGD-YRKDDPSSFRLSPNFS 558 (745)
T ss_pred EEEEeehhhccccchHhhhccchHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHhc-cCCCCchhhcCChhhh
Confidence 9999999999876 6899999999999999999999999999999999999999999999999 6899999999999999
Q ss_pred cHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccc
Q psy12437 708 VLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAER 787 (901)
Q Consensus 708 ~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~ 787 (901)
+||+||||||||++|..+ |.|||||+|++|+|.+.++.+++.||+|+|++|+. ++ .+.| +.||..+
T Consensus 559 l~PQfmfhLRRS~fLqvf-NnSPDEt~~yrhll~~e~v~~sliMIqP~L~sySf---------~g--~~ep--vlLD~~S 624 (745)
T KOG1986|consen 559 LYPQFMFHLRRSPFLQVF-NNSPDETAYYRHLLNREDVDNSLIMIQPTLLSYSF---------NG--PPEP--VLLDVAS 624 (745)
T ss_pred hhHHHHHhhccchhhhcc-CCCcchHHHHHHHHhhccchhhhheecceeeeeec---------CC--CCce--eEecccc
Confidence 999999999999999997 89999999999999999999999999999999983 22 2334 5599999
Q ss_pred cccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcc-----cccCCCCchHHHHHHHHHHHHHhhcCCCcccE
Q psy12437 788 LQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPET-----LFELPQLETQLSLKLNSFISYLNDDKAYVSPV 862 (901)
Q Consensus 788 l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~-----~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~ 862 (901)
|.+|.|+|||++|+|+||+|..|.+|+ +.+|++.|++ +++.|+.|+.+ .+.++ |++|+
T Consensus 625 i~~D~iLLlDt~f~i~i~hG~tIaqWR------~~gy~~~pe~~~f~~LL~ap~~dA~e---------l~~~R--FP~PR 687 (745)
T KOG1986|consen 625 ILADRILLLDTYFTIVIFHGSTIAQWR------KAGYHEQPEYENFKELLEAPREDAQE---------LLLER--FPMPR 687 (745)
T ss_pred cCCceEEEeecceEEEEECCchHHHHH------hcccccChhhHHHHHHHHhHHHHHHH---------HHHhh--CCCCe
Confidence 999999999999999999999999999 5666666654 33444444433 34444 99999
Q ss_pred EEEeCCCccHHHHHHHhcccCC---------------CCCCCHHHHHHHHHHhC
Q psy12437 863 KVIKDSSPDRMEFYDKLIEDKN---------------AGGMAYYEFLLRIREQV 901 (901)
Q Consensus 863 ~iv~~~~~~~~~f~~~LvED~~---------------~~~~Sy~~fl~~lh~~i 901 (901)
+|+++.+++++||+...+++.. .+++||.+|+.||+|..
T Consensus 688 ~v~~~q~GSQARFLlsklnPS~t~~~~~~~~~s~~I~TDDvSlq~fm~hLkkla 741 (745)
T KOG1986|consen 688 YVVTDQGGSQARFLLSKLNPSETHNNLTAHGGSSIILTDDVSLQVFMEHLKKLA 741 (745)
T ss_pred EEEecCCccHHHhhhhhcCcchhccchhhccCCCeeeeccccHHHHHHHHHhhc
Confidence 9999999999999988888742 27899999999999863
No 7
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.5e-99 Score=812.55 Aligned_cols=616 Identities=19% Similarity=0.279 Sum_probs=530.5
Q ss_pred ccCCCcccccc-------CCCCCCCCCCcccCCCCCCCCC----------------CcCccCcccccCCCCCCCCC---C
Q psy12437 234 MNKMWGYEPHD-------LLNTRDILPATKVEPPPIRLPQ----------------NLPEIHEQFLYDRNTEMFGD---P 287 (901)
Q Consensus 234 ~~~~~~~~~v~-------pl~e~~~lp~~~~~Pp~~~~~~----------------~~~~~p~~~~~~~~~~~~~d---~ 287 (901)
.+|.++.+.++ |+||.+.+++..|+| +.|+. +.|.||+|.++|+.|.+|.| .
T Consensus 21 at~~da~~~~iPia~lY~Pl~e~~~~~v~~yep--v~C~~pC~avlnpyC~id~r~~~W~CpfCnqrn~lp~qy~~iS~~ 98 (755)
T COG5047 21 ATRGDATRTVIPIACLYTPLHEDDALTVNYYEP--VKCTAPCKAVLNPYCHIDERNQSWICPFCNQRNTLPPQYRDISNA 98 (755)
T ss_pred CCccccccccccHHHhccccccccccCcccCCC--ceecccchhhcCcceeeccCCceEecceecCCCCCChhhcCCCcc
Confidence 56788888776 789999999999999 44432 68999999999999999975 5
Q ss_pred CCcccc--ccccEEEEecccccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEE
Q psy12437 288 YRRPEI--QSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVH 365 (901)
Q Consensus 288 ~~rpEL--~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~ 365 (901)
+.++|| +++||||+++++ +-.||+|+||||++.+..+ |.+++++|+.+|..+|.++ +||||||++.|+
T Consensus 99 ~LplellpqssTiey~lskp-----~~~ppvf~fvvD~~~D~e~---l~~Lkdslivslsllppea--LvglItygt~i~ 168 (755)
T COG5047 99 NLPLELLPQSSTIEYTLSKP-----VILPPVFFFVVDACCDEEE---LTALKDSLIVSLSLLPPEA--LVGLITYGTSIQ 168 (755)
T ss_pred cCCccccCCCceEEEEccCC-----ccCCceEEEEEEeecCHHH---HHHHHHHHHHHHhcCCccc--eeeEEEecceeE
Confidence 889999 899999999853 5679999999999997555 9999999999999999998 999999999999
Q ss_pred EEEcCCCCCCCceeeccC--------ccccC--------------CC-----CCCCcccchhhhHHHHHHHHHhCC-ccc
Q psy12437 366 FYSLAEGQTQPSQMILTD--------IDDIF--------------LP-----SPENILVNLSECYDMIVDLLKQLP-GKF 417 (901)
Q Consensus 366 ~y~l~~~~~~~~~~v~~d--------l~d~f--------------~p-----~~~~~lv~l~e~~~~i~~lL~~L~-~~~ 417 (901)
+|+++... ..+..|.+. |++.. ++ .+.+|+.++.+|+..+.++|++|. +.|
T Consensus 169 v~el~ae~-~~r~~VF~g~~eyt~~~L~~ll~~~~~~~~~~~es~is~~~~~~~~rFl~p~q~ce~~L~n~le~L~pd~~ 247 (755)
T COG5047 169 VHELNAEN-HRRSYVFSGNKEYTKENLQELLALSKPTKSGGFESKISGIGQFASSRFLLPTQQCEFKLLNILEQLQPDPW 247 (755)
T ss_pred EEeccccc-cCcceeecchHHHHHHHHHHHhcccCCCCcchhhhhcccccccchhhhhccHHHHHHHHHHHHHHhCCCCc
Confidence 99998642 334444321 11110 01 134699999999999999999997 455
Q ss_pred --cCCCCCCCcHHHHHHHHHHhhcC----CCCEEEEEecCCCCCCCCcccCCC--CCCCCCC----CCCCCCCchHHHHH
Q psy12437 418 --KDSLDSGSALGPALQAAFKLLQP----TGGRITIFQTCLPNRGPGALQSRE--NPNQRSN----DDPPHMNPATDFYK 485 (901)
Q Consensus 418 --~~~~~~~~~~G~AL~~A~~ll~~----~GGrI~~F~~g~pt~GpG~l~~~~--~~~~~~~----~~~~~~~~a~~fY~ 485 (901)
..++|+.||+|+||.+|..||+. .|+||++|++||||.|||+|++++ +++|..| +.+++.+++.|||+
T Consensus 248 ~v~~~~Rp~RCTGsAl~ias~Ll~~~~p~~~~~i~lF~~GPcTvGpG~Vvs~elkEpmRshH~ie~d~aqh~kka~KFY~ 327 (755)
T COG5047 248 PVPAGKRPLRCTGSALNIASSLLEQCFPNAGCHIVLFAGGPCTVGPGTVVSTELKEPMRSHHDIESDSAQHSKKATKFYK 327 (755)
T ss_pred cCCCCCCCccccchhHHHHHHHHHhhccCcceeEEEEcCCCccccCceeeehhhcccccccccccccchhhccchHHHHH
Confidence 57899999999999999999985 799999999999999999999986 6666333 22688999999999
Q ss_pred HHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhc------ccccceeE
Q psy12437 486 KIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR------KIGFESVM 559 (901)
Q Consensus 486 ~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~------~~g~~a~l 559 (901)
.||++.+.+|+++|+|+.+.|++|+.||+.|...|||.+.+.++|+. +.|...+.|++.+ ++||+|.|
T Consensus 328 ~laeR~a~~gh~~DifagcldqIGI~eM~~L~~sTgg~lvlsdsF~t------~ifkqSfqrif~~d~~g~l~~gfNa~m 401 (755)
T COG5047 328 GLAERVANQGHALDIFAGCLDQIGIMEMEPLTTSTGGALVLSDSFTT------SIFKQSFQRIFNRDSEGYLKMGFNANM 401 (755)
T ss_pred HHHHHHhccchhHHHHHHHHHhhhhhcchhhccCCcceEEEeccccH------HHHHHHHHHHhCcCcccchhhhhccce
Confidence 99999999999999999999999999999999999999999999996 4455555555533 58999999
Q ss_pred EEEecCCceEEEEecceec---------------cCCCceeecCCCCCceEEEEEEEecccCC-----CceeEEEEEEEe
Q psy12437 560 RIRCTKGMSIHTFHGNFFV---------------RSTDLLALPNVNPDAGYGIQISIDENLTH-----IQYACFQVAVLY 619 (901)
Q Consensus 560 ~vr~S~gl~i~~~~G~~~~---------------~~t~~~~l~~i~~~~s~~~~~~~~~~l~~-----~~~~~iQ~allY 619 (901)
+|.|||+|+|++++|+... +.|+.|+++.+.|.+++++.|++...... ...+||||.+.|
T Consensus 402 ~V~TsKnl~~~g~ig~a~~~~k~~~ni~~~eigi~~t~swkm~slsPk~nyal~fei~~~~~~~~~~~~~~a~iQfiT~y 481 (755)
T COG5047 402 EVKTSKNLKIKGLIGHAVSVKKKANNISDSEIGIGATNSWKMASLSPKSNYALYFEIALGAASGSAQRPAEAYIQFITTY 481 (755)
T ss_pred eEeeccCceeeeeecceeeecccccccccccccccccccccccccCCCcceEEEEEeccccCCCccCCcccchhhhhhhh
Confidence 9999999999999998752 34778999999999999999999865332 257999999999
Q ss_pred eecCCCeEEEEEeccccccc-CHHHHHhccCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy12437 620 TSSKGDRRIRVHTLCLPVVS-NINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG 698 (901)
Q Consensus 620 t~~~G~rriRV~T~~l~vt~-~~~~v~~~~D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~ 698 (901)
.+++|..||||+|++..+++ ....+.++||+||+++++||+++.|+..++..|+.+|+|+.|+++|+.|.. +.|++|+
T Consensus 482 Qhss~t~riRVtTvar~f~~~~~p~i~~SFdqEaaaV~~aR~a~~K~~~ed~~Dv~rw~dr~lirlcq~fa~-y~k~dps 560 (755)
T COG5047 482 QHSSGTYRIRVTTVARMFTDGGLPKINRSFDQEAAAVFMARIAAFKAETEDIIDVFRWIDRNLIRLCQKFAD-YRKDDPS 560 (755)
T ss_pred hccCCcEEEEEeehhhhhccCCChhhhhcchhhHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHh-cCCCCch
Confidence 99999999999999988876 456788999999999999999999999999999999999999999999998 7899999
Q ss_pred ccccCcccCcHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccC
Q psy12437 699 SLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIP 778 (901)
Q Consensus 699 ~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P 778 (901)
++.|+++|.++|+|||+||||++|..+ |.|||||+||+|.|.+.++++++.||+|+|.+||.. ++ ..|
T Consensus 561 sfrl~~~f~lypqf~y~lrRSpfL~vf-NnSPDEt~fyrh~l~~~dv~~sLimiqPtL~Sys~~---------~~--~~p 628 (755)
T COG5047 561 SFRLDPNFTLYPQFMYHLRRSPFLSVF-NNSPDETAFYRHMLNNADVNDSLIMIQPTLQSYSFE---------KG--GVP 628 (755)
T ss_pred hhcCCcchhhhhHHHhhhhccceeecc-CCCcchHHHHHHHHhcccccchhhhhcchheeeecc---------CC--Cce
Confidence 999999999999999999999999998 999999999999999999999999999999999942 11 134
Q ss_pred ccccccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcc-----cccCCCCchHHHHHHHHHHHHHh
Q psy12437 779 RILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPET-----LFELPQLETQLSLKLNSFISYLN 853 (901)
Q Consensus 779 ~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~-----~~~lp~~d~~~s~~~~~~i~~l~ 853 (901)
+-||+-++++|.|+|||++++|+||+|+.+.+|+ ...|++.+++ +++.|++++.+ .|.
T Consensus 629 --VlLDs~svkpdviLLlDtff~Ili~hG~~iaqwr------~agyq~qpey~~lK~Ll~~p~~ea~e---------ll~ 691 (755)
T COG5047 629 --VLLDSVSVKPDVILLLDTFFHILIFHGSYIAQWR------NAGYQEQPEYLNLKELLEAPRLEAAE---------LLQ 691 (755)
T ss_pred --EEEeccccCCCeEEEeeceeEEEEECChHHHHHH------hhhhhcCchhhhHHHHhhchhhHHHH---------HHH
Confidence 4489999999999999999999999999999999 4556665655 34555555443 455
Q ss_pred hcCCCcccEEEEeCCCccHHHHHHHhcccCC--------------CCCCCHHHHHHHHHHh
Q psy12437 854 DDKAYVSPVKVIKDSSPDRMEFYDKLIEDKN--------------AGGMAYYEFLLRIREQ 900 (901)
Q Consensus 854 ~~r~~~~p~~iv~~~~~~~~~f~~~LvED~~--------------~~~~Sy~~fl~~lh~~ 900 (901)
++ |+.|++|+++++++++||+...|++.. .++++|.+|+.||.|.
T Consensus 692 dR--fP~Prfi~teqggSQaRfLlskinPsd~~~~~~~~~s~tilTddv~lq~fm~hl~~l 750 (755)
T COG5047 692 DR--FPIPRFIVTEQGGSQARFLLSKINPSDITNKMSGGGSETILTDDVNLQKFMNHLRKL 750 (755)
T ss_pred hh--CCCCeEEEecCCccHHHHHHhhcCccccccccccCccceeeecccCHHHHHHHHHHH
Confidence 55 899999999999999999988877651 1689999999999885
No 8
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=100.00 E-value=2.4e-53 Score=448.85 Aligned_cols=241 Identities=49% Similarity=0.834 Sum_probs=225.9
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p 390 (901)
|+||+|+||||+|..++++|+++++|++|+++|+.+|++ .|++|||||||+.||||+++.+..++++++++|++|+|+|
T Consensus 1 p~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P 80 (244)
T cd01479 1 PQPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLP 80 (244)
T ss_pred CCCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCC
Confidence 579999999999999999999999999999999999988 8899999999999999999988888999999999999999
Q ss_pred CCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCC
Q psy12437 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRS 470 (901)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~ 470 (901)
.+++||+++.||++.|+++|++|++.|.+++++.+|+|+||++|..+|+..||||++|++|+||.|||+|+.|++...++
T Consensus 81 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~GGkIi~f~s~~pt~GpG~l~~~~~~~~~~ 160 (244)
T cd01479 81 LPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETGGKIIVFQSSLPTLGAGKLKSREDPKLLS 160 (244)
T ss_pred CCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcCCEEEEEeCCCCCcCCcccccCccccccC
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999987654443
Q ss_pred -CCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhh
Q psy12437 471 -NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYL 549 (901)
Q Consensus 471 -~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l 549 (901)
++|.++++++++||++||.+|+++||+||+|+++.+++|+++|+.||+.|||.+++|++|+-....|.++|.+||.|++
T Consensus 161 ~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~~~~~~~~d~~kl~~dl~~~l 240 (244)
T cd01479 161 TDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYPSFNFSAPNDVEKLVNELARYL 240 (244)
T ss_pred chhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcccChhhhhhhhhhcCceEEEECCccCCchhhHHHHHHHHHHHh
Confidence 3567899999999999999999999999999999999999999999999999999999554333578999999999999
Q ss_pred hcc
Q psy12437 550 TRK 552 (901)
Q Consensus 550 ~~~ 552 (901)
+|+
T Consensus 241 tr~ 243 (244)
T cd01479 241 TRK 243 (244)
T ss_pred ccc
Confidence 886
No 9
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=100.00 E-value=1.5e-49 Score=420.55 Aligned_cols=234 Identities=44% Similarity=0.741 Sum_probs=218.9
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
|+||+|+||||+|.+|+++|+++.+|++|+.+|+.||++++++|||||||+.||||+++....+++++|++|++|+|+|.
T Consensus 1 p~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~ 80 (239)
T cd01468 1 PQPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPL 80 (239)
T ss_pred CCCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCC
Confidence 58999999999999999999999999999999999997677799999999999999999876678999999999999999
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccC--CCCCCCcHHHHHHHHHHhhcCC--CCEEEEEecCCCCCCCCcccCCCCCC
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKD--SLDSGSALGPALQAAFKLLQPT--GGRITIFQTCLPNRGPGALQSRENPN 467 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~--~~~~~~~~G~AL~~A~~ll~~~--GGrI~~F~~g~pt~GpG~l~~~~~~~ 467 (901)
+++||+++.|+++.|.++|++|+..+.. ++++.||+|+||++|..+|+.. ||||++|++|+||.|||+|+.|++..
T Consensus 81 ~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~gGkI~~f~sg~pt~GpG~l~~~~~~~ 160 (239)
T cd01468 81 PDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFAGGRIIVFQGGLPTVGPGKLKSREDKE 160 (239)
T ss_pred cCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCCCceEEEEECCCCCCCCCccccCcccc
Confidence 9999999999999999999999988876 8899999999999999999998 99999999999999999999987654
Q ss_pred C-CCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHH
Q psy12437 468 Q-RSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 546 (901)
Q Consensus 468 ~-~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~ 546 (901)
. ++++++++++++.+||++||.+|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+. ..+.++|.++|.
T Consensus 161 ~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f~~--~~~~~~~~~~l~ 238 (239)
T cd01468 161 PIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSFQA--PNDGSKFKQDLQ 238 (239)
T ss_pred cCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCCCC--cccHHHHHHHhc
Confidence 4 3667889999999999999999999999999999999999999999999999999999999985 356799999886
Q ss_pred H
Q psy12437 547 R 547 (901)
Q Consensus 547 ~ 547 (901)
|
T Consensus 239 r 239 (239)
T cd01468 239 R 239 (239)
T ss_pred C
Confidence 4
No 10
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=100.00 E-value=1.6e-48 Score=414.48 Aligned_cols=236 Identities=42% Similarity=0.757 Sum_probs=200.1
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
|+||+|+||||+|..|+++|+++.+|++|+++|+.||.+++++|||||||++||||+++.....+++++++|++|+|+|.
T Consensus 1 P~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~ 80 (243)
T PF04811_consen 1 PQPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPL 80 (243)
T ss_dssp -S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSST
T ss_pred CCCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCC
Confidence 68999999999999999999999999999999999997778899999999999999999877789999999999999999
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccCC--CCCCCcHHHHHHHHHHhhc--CCCCEEEEEecCCCCCCC-CcccCCCCC
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKDS--LDSGSALGPALQAAFKLLQ--PTGGRITIFQTCLPNRGP-GALQSRENP 466 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~--~~~~~~~G~AL~~A~~ll~--~~GGrI~~F~~g~pt~Gp-G~l~~~~~~ 466 (901)
+++||+++.|+++.|+++|++|+..|... +++.||+|+||++|..+|+ ..||||++|++|+||.|| |++..+++.
T Consensus 81 ~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gGkI~~F~s~~pt~G~Gg~l~~~~~~ 160 (243)
T PF04811_consen 81 PDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGGKILVFTSGPPTYGPGGSLKKREDS 160 (243)
T ss_dssp SSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-EEEEEEESS---SSSTTSS-SBTTS
T ss_pred cccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCCEEEEEeccCCCCCCCceecccccc
Confidence 99999999999999999999999888766 8899999999999999999 899999999999999999 677766555
Q ss_pred CCCC-CCC-CCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHH
Q psy12437 467 NQRS-NDD-PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRM 544 (901)
Q Consensus 467 ~~~~-~~~-~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~d 544 (901)
.... .++ ..+++++.+||++||++|++.||+||+|+++.+++|+++|+.||+.|||.+++|++|+. ..+.++|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~~--~~~~~~l~~d 238 (243)
T PF04811_consen 161 SHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFNA--ERDGEKLRQD 238 (243)
T ss_dssp CCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTTC--HHHHHHHHHH
T ss_pred cccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCCC--chhHHHHHHH
Confidence 4332 344 46788889999999999999999999999999999999999999999999999999995 5788999999
Q ss_pred HHHhh
Q psy12437 545 FSRYL 549 (901)
Q Consensus 545 l~~~l 549 (901)
|.|++
T Consensus 239 l~r~~ 243 (243)
T PF04811_consen 239 LKRLV 243 (243)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99864
No 11
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=100.00 E-value=3.3e-46 Score=397.10 Aligned_cols=224 Identities=24% Similarity=0.336 Sum_probs=192.7
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCC---------------CCC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQ---------------TQP 376 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~---------------~~~ 376 (901)
|.||+|+||||+|..+++ ++.++++|+.+|+.||+++ +|||||||+.||||||+... ++.
T Consensus 1 p~pp~~vFviDvs~~~~e---l~~l~~sl~~~L~~lP~~a--~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~ 75 (267)
T cd01478 1 TSPPVFLFVVDTCMDEEE---LDALKESLIMSLSLLPPNA--LVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQI 75 (267)
T ss_pred CCCCEEEEEEECccCHHH---HHHHHHHHHHHHHhCCCCC--EEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHH
Confidence 579999999999999887 8899999999999999887 99999999999999998531 011
Q ss_pred ce-e------------eccCccccCCCCC-CCcccchhhhHHHHHHHHHhCCcc-c--cCCCCCCCcHHHHHHHHHHhhc
Q psy12437 377 SQ-M------------ILTDIDDIFLPSP-ENILVNLSECYDMIVDLLKQLPGK-F--KDSLDSGSALGPALQAAFKLLQ 439 (901)
Q Consensus 377 ~~-~------------v~~dl~d~f~p~~-~~~lv~l~e~~~~i~~lL~~L~~~-~--~~~~~~~~~~G~AL~~A~~ll~ 439 (901)
++ + +.+|++|+|.|.+ ++||++++||++.|+++|++|+.. | ..++++.||+|+||++|..+|+
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~ 155 (267)
T cd01478 76 QDMLGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLE 155 (267)
T ss_pred HHHhccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHH
Confidence 11 1 2235688898876 689999999999999999999753 3 5678999999999999999998
Q ss_pred ----CCCCEEEEEecCCCCCCCCcccCCCCCCC-CCCC----C-CCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccC
Q psy12437 440 ----PTGGRITIFQTCLPNRGPGALQSRENPNQ-RSND----D-PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 509 (901)
Q Consensus 440 ----~~GGrI~~F~~g~pt~GpG~l~~~~~~~~-~~~~----~-~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~ 509 (901)
..||||++|++|+||.|||+|+.|++... ++|+ + .++++++++||++||.+|+++||+||+|+++.+++|
T Consensus 156 ~~~~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d~vg 235 (267)
T cd01478 156 ACFPNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQVG 235 (267)
T ss_pred hhcCCCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccccccC
Confidence 58999999999999999999999864332 2432 2 368999999999999999999999999999999999
Q ss_pred chhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHH
Q psy12437 510 LATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 546 (901)
Q Consensus 510 l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~ 546 (901)
|+||+.|++.|||.+++|++|+. +.|...|+
T Consensus 236 laem~~l~~~TGG~v~~~~~f~~------~~f~~s~~ 266 (267)
T cd01478 236 LLEMKVLVNSTGGHVVLSDSFTT------SIFKQSFQ 266 (267)
T ss_pred HHHHHHHHHhcCcEEEEeCCcch------HHHHHHhc
Confidence 99999999999999999999996 55655554
No 12
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes part of the Sec23/24 beta-barrel domain, which is formed from approximately 180 residues from three segments of the polypeptide. The strands of the barrel are oriented roughly parallel to the membrane such that one end of the barrel forms part of the inner surface of the coat and the other end part of the membrane-distal surface. The barrel is constructed from two opposed sheets: a six-stranded beta sheet facing partly towards the zinc finger domain and partly towards the solvent, and a five-stranded beta sheet facing the helical domain.; PDB: 3EFO_B 3EG9_B 1PD0_A 1PD1_A 1M2V_B 1PCX_A 3EH2_C 3EGD_A 2NUP_A 3EGX_A ....
Probab=99.83 E-value=9e-21 Score=171.00 Aligned_cols=85 Identities=46% Similarity=0.825 Sum_probs=76.7
Q ss_pred ccceeEEEEecCCceEEEEecceeccC---------CCc--eeecCCCCCceEEEEEEEecccCCCceeEEEEEEEeeec
Q psy12437 554 GFESVMRIRCTKGMSIHTFHGNFFVRS---------TDL--LALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSS 622 (901)
Q Consensus 554 g~~a~l~vr~S~gl~i~~~~G~~~~~~---------t~~--~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allYt~~ 622 (901)
||+|+||||||+||+|++++||++..+ .+. |++++++++++|+|+|++++++...+.+||||+++||+.
T Consensus 1 g~~~~l~vr~S~gl~v~~~~G~~~~~~~~s~~~~g~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~iQ~~~~Yt~~ 80 (96)
T PF08033_consen 1 GFNAVLRVRCSKGLKVSGVIGPCFNRSSVSDNEIGEGDTTRWKLPSLDPDTSFAFEFEIDEDLPNGSQAYIQFALLYTDS 80 (96)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSEESSTBESSECSBSSCSEEEEEEEETT--EEEEEEESSBTBTTSEEEEEEEEEEEET
T ss_pred CceEEEEEEECCCeEEEEEEcCccccccccceeeccCCccEEEecccCCCCEEEEEEEECCCCCCCCeEEEEEEEEEECC
Confidence 799999999999999999999998765 444 999999999999999999998877789999999999999
Q ss_pred CCCeEEEEEecccccc
Q psy12437 623 KGDRRIRVHTLCLPVV 638 (901)
Q Consensus 623 ~G~rriRV~T~~l~vt 638 (901)
+|+|||||+|+++|+|
T Consensus 81 ~G~r~iRV~T~~l~vt 96 (96)
T PF08033_consen 81 NGERRIRVTTLSLPVT 96 (96)
T ss_dssp TSEEEEEEEEEEEEEE
T ss_pred CCCEEEEEEeeccccC
Confidence 9999999999999986
No 13
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region, and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the all-helical domain, which forms an approximately 105-residue segment with the C-terminal 30 residues. The linker between alpha-M and alpha-N contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_B 2NUP_B 2NUT_B 3EGX_B 3EH2_C 3EH1_A 3EFO_B 3EG9_B 2QTV_A 1M2O_C ....
Probab=99.83 E-value=3.1e-20 Score=169.66 Aligned_cols=102 Identities=44% Similarity=0.691 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ccccCcccCcHHHHHHHHhcCccccCCCCC
Q psy12437 650 QACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG-SLLAPSSLKVLPLYVLALLKHPAFRIGQST 728 (901)
Q Consensus 650 ~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~ 728 (901)
|||++++++|++++++.++++.|+|++++++|++++++||++|+...++ +|+|||+||+||+|+++|+||++|+. .++
T Consensus 1 Qda~~~llak~ai~~~~~~~l~~~r~~l~~~~v~il~~Yr~~~~~~~~~~qLilPe~lklLPly~l~llKs~alr~-~~v 79 (103)
T PF04815_consen 1 QDAITSLLAKQAIDKALSSSLKDARESLDNRLVDILAAYRKNCASSSSSGQLILPESLKLLPLYILALLKSPALRP-TNV 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHCTTECCCTEEEEEGGGTTHHHHHHHHHTSTTTSC-STS
T ss_pred CHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhCCHHHHHHHHHHHHHHcchhhcC-CCC
Confidence 7999999999999999999999999999999999999999998876664 59999999999999999999999999 699
Q ss_pred ChhHHHHHHHHHcCCChHhhHhhh
Q psy12437 729 RLDDRLFAMTEMKCLPLNSLMLSI 752 (901)
Q Consensus 729 s~Der~~~~~~l~~~~~~~~~~~i 752 (901)
++|||+|.++++++++++.++.||
T Consensus 80 ~~D~R~~~~~~~~~~~~~~~~~~i 103 (103)
T PF04815_consen 80 SPDERAYAMHLLLSMPVDSLLRMI 103 (103)
T ss_dssp -HHHHHHHHHHHHHS-HHHHHHHH
T ss_pred CCcHHHHHHHHHHCCCHHHHHhhC
Confidence 999999999999999999999886
No 14
>PRK13685 hypothetical protein; Provisional
Probab=98.72 E-value=5e-07 Score=100.49 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=116.0
Q ss_pred CCcEEEEEEEcchhHHhh----chHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccC
Q psy12437 313 QPAMYLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF 388 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~----g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f 388 (901)
.+...+||||+|.+.... ..++.++++++..++.++++. +||+|+|++..++.
T Consensus 87 ~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d--~vglv~Fa~~a~~~--------------------- 143 (326)
T PRK13685 87 NRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGI--NLGLIAFAGTATVL--------------------- 143 (326)
T ss_pred CCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCC--eEEEEEEcCceeec---------------------
Confidence 345689999999865432 468999999999999986555 89999999875421
Q ss_pred CCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----------CCCEEEEEecCCCCCCC
Q psy12437 389 LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----------TGGRITIFQTCLPNRGP 457 (901)
Q Consensus 389 ~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----------~GGrI~~F~~g~pt~Gp 457 (901)
+| +.+.++.+...|+.|.. ...+++|.|+..|...+.. ..++|+++++|-.|.|.
T Consensus 144 ~p--------~t~d~~~l~~~l~~l~~------~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~ 209 (326)
T PRK13685 144 VS--------PTTNREATKNAIDKLQL------ADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPT 209 (326)
T ss_pred CC--------CCCCHHHHHHHHHhCCC------CCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCC
Confidence 11 11245667788888842 3567889999999887752 13689999999877654
Q ss_pred CcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc-------------cCchhhhhccccCCceE
Q psy12437 458 GALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY-------------VDLATLSGVSKFSSGCI 524 (901)
Q Consensus 458 G~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~-------------~~l~~l~~l~~~TGG~v 524 (901)
...... . . .+.+..+.+.||.|..+.++.+. .|-..|..+++.|||..
T Consensus 210 ~~~~~~---------------~--~--~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~ 270 (326)
T PRK13685 210 NPDNPR---------------G--A--YTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEF 270 (326)
T ss_pred CCCCcc---------------c--H--HHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEE
Confidence 221000 0 0 24566778899999999988642 57789999999999988
Q ss_pred EEeCC
Q psy12437 525 HHIPL 529 (901)
Q Consensus 525 ~~y~~ 529 (901)
++.++
T Consensus 271 ~~~~~ 275 (326)
T PRK13685 271 YTAAS 275 (326)
T ss_pred EEcCC
Confidence 87654
No 15
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.62 E-value=1.1e-06 Score=89.37 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=106.3
Q ss_pred EEEEEEEcchhHHhh----chHHHHHHHHHHHHhcCC-CCCCceEEEEEE-ccEEEEEEcCCCCCCCceeeccCccccCC
Q psy12437 316 MYLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMP-GDRRTSIAIITY-DSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 316 ~~vFvID~s~~a~~~----g~l~~~~~si~~~L~~lp-~~~~~~VglItf-d~~V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
-.+|+||+|.+..++ ..++.+++.+...++.+. .++.-+||||+| +..-++. .
T Consensus 5 ~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~---------------------~ 63 (183)
T cd01453 5 HLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKL---------------------T 63 (183)
T ss_pred EEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEE---------------------E
Confidence 368999999875533 368888988888776531 122238999999 4443321 1
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---C-CCEEEEEecCCCCCCCCcccCCCC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---T-GGRITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~-GGrI~~F~~g~pt~GpG~l~~~~~ 465 (901)
|+.. ..+.+...|+.+ + .....+.++.||..|..+|+. . +++|++++++.-+.+|+
T Consensus 64 PlT~--------D~~~~~~~L~~~--~---~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~------- 123 (183)
T cd01453 64 DLTG--------NPRKHIQALKTA--R---ECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPG------- 123 (183)
T ss_pred CCCC--------CHHHHHHHhhcc--c---CCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChh-------
Confidence 2211 112344444444 1 123458999999999999964 2 35788887763222221
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHH
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMF 545 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl 545 (901)
-+.++++.+.+.||.|+++.+.. ++..|..+|+.|||+.|...+ .+.|...+
T Consensus 124 -----------------~~~~~~~~l~~~~I~v~~IgiG~---~~~~L~~ia~~tgG~~~~~~~--------~~~l~~~~ 175 (183)
T cd01453 124 -----------------NIYETIDKLKKENIRVSVIGLSA---EMHICKEICKATNGTYKVILD--------ETHLKELL 175 (183)
T ss_pred -----------------hHHHHHHHHHHcCcEEEEEEech---HHHHHHHHHHHhCCeeEeeCC--------HHHHHHHH
Confidence 12567888999999999999864 467899999999999987643 34555555
Q ss_pred HH
Q psy12437 546 SR 547 (901)
Q Consensus 546 ~~ 547 (901)
.+
T Consensus 176 ~~ 177 (183)
T cd01453 176 LE 177 (183)
T ss_pred Hh
Confidence 44
No 16
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.58 E-value=2.2e-06 Score=85.87 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=112.0
Q ss_pred EEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCc
Q psy12437 316 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 395 (901)
Q Consensus 316 ~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~ 395 (901)
.++||||+|.+.... -++.+++++...+..++.+. +||+|+|++..+.+- + +.+
T Consensus 2 ~~~~vlD~S~SM~~~-~~~~~k~a~~~~~~~l~~~~--~v~li~f~~~~~~~~--------------~------~~~--- 55 (170)
T cd01465 2 NLVFVIDRSGSMDGP-KLPLVKSALKLLVDQLRPDD--RLAIVTYDGAAETVL--------------P------ATP--- 55 (170)
T ss_pred cEEEEEECCCCCCCh-hHHHHHHHHHHHHHhCCCCC--EEEEEEecCCccEEe--------------c------Ccc---
Confidence 378999999865433 37888899999999887665 899999998654320 0 000
Q ss_pred ccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC---C--CEEEEEecCCCCCCCCcccCCCCCCCCC
Q psy12437 396 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---G--GRITIFQTCLPNRGPGALQSRENPNQRS 470 (901)
Q Consensus 396 lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---G--GrI~~F~~g~pt~GpG~l~~~~~~~~~~ 470 (901)
...+..+...|+.+. ....+.++.||..|...++.. + .+|++|++|.++.|+...
T Consensus 56 ----~~~~~~l~~~l~~~~------~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~---------- 115 (170)
T cd01465 56 ----VRDKAAILAAIDRLT------AGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDP---------- 115 (170)
T ss_pred ----cchHHHHHHHHHcCC------CCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCH----------
Confidence 011234555566553 244578999999999988641 2 579999999988765211
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCC
Q psy12437 471 NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 530 (901)
Q Consensus 471 ~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f 530 (901)
+-+.++...+.+.++.|++|.+. +..+...|..++..++|..++.++.
T Consensus 116 -----------~~~~~~~~~~~~~~v~i~~i~~g-~~~~~~~l~~ia~~~~g~~~~~~~~ 163 (170)
T cd01465 116 -----------DELARLVAQKRESGITLSTLGFG-DNYNEDLMEAIADAGNGNTAYIDNL 163 (170)
T ss_pred -----------HHHHHHHHHhhcCCeEEEEEEeC-CCcCHHHHHHHHhcCCceEEEeCCH
Confidence 22445566677889999999998 6788999999999999998877653
No 17
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.58 E-value=1.3e-06 Score=88.39 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=105.4
Q ss_pred cEEEEEEEcchhHHhh-----chHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy12437 315 AMYLFLLDVSQIAAQS-----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 315 p~~vFvID~s~~a~~~-----g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
.-++||||+|.+.... ..++.++..+...+...+++ +||+|+|++.+++. +
T Consensus 3 ~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~~~~---~v~lv~f~~~~~~~---------------------~ 58 (180)
T cd01467 3 RDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRREND---RIGLVVFAGAAFTQ---------------------A 58 (180)
T ss_pred ceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhCCCC---eEEEEEEcCCeeec---------------------c
Confidence 3578999998764321 13677777777777766533 89999998875431 1
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENP 466 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~ 466 (901)
|. ...+..+..+|+.|... .....+.++.||..|..++.. ....|+++++|.++.|.-.
T Consensus 59 ~~--------~~~~~~~~~~l~~l~~~---~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~------- 120 (180)
T cd01467 59 PL--------TLDRESLKELLEDIKIG---LAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEID------- 120 (180)
T ss_pred CC--------CccHHHHHHHHHHhhhc---ccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCC-------
Confidence 11 11233455666666421 123557899999999998864 2357999999987754300
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCC----------ccCchhhhhccccCCceEEEeCC
Q psy12437 467 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ----------YVDLATLSGVSKFSSGCIHHIPL 529 (901)
Q Consensus 467 ~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~----------~~~l~~l~~l~~~TGG~v~~y~~ 529 (901)
..+.+..+.+.||.|+.+.+... ..|...|..|+..|||.+++..+
T Consensus 121 -----------------~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tgG~~~~~~~ 176 (180)
T cd01467 121 -----------------PATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTGGRIFRALD 176 (180)
T ss_pred -----------------HHHHHHHHHHCCCEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcCCEEEEecC
Confidence 12334456678999999988863 46778899999999999998753
No 18
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=98.57 E-value=2.7e-06 Score=86.17 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=109.6
Q ss_pred EEEEEEEcchhHHhhchHHHHHHHHHHHHhc-CCCCCCceEEEEEEccE-EEEEEcCCCCCCCceeeccCccccCCCCCC
Q psy12437 316 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIFLPSPE 393 (901)
Q Consensus 316 ~~vFvID~s~~a~~~g~l~~~~~si~~~L~~-lp~~~~~~VglItfd~~-V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~ 393 (901)
.++||||+|.+.....-++.+++++...+.. +..+. +||+|+|++. .++. +|..
T Consensus 2 ~v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d--~v~lv~F~~~~~~~~---------------------~~~t- 57 (178)
T cd01451 2 LVIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRD--KVALIAFRGTEAEVL---------------------LPPT- 57 (178)
T ss_pred eEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCC--EEEEEEECCCCceEE---------------------eCCC-
Confidence 3689999998654322578888888887754 34344 8999999864 2211 1110
Q ss_pred CcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhc----CCC--CEEEEEecCCCCCCCCcccCCCCCC
Q psy12437 394 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQ----PTG--GRITIFQTCLPNRGPGALQSRENPN 467 (901)
Q Consensus 394 ~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~----~~G--GrI~~F~~g~pt~GpG~l~~~~~~~ 467 (901)
..+..+...|+.++ ....+.++.||..|...++ ..+ ..|+++++|.++.|....
T Consensus 58 -------~~~~~~~~~l~~l~------~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~------- 117 (178)
T cd01451 58 -------RSVELAKRRLARLP------TGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPT------- 117 (178)
T ss_pred -------CCHHHHHHHHHhCC------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCch-------
Confidence 11223445566663 2456899999999999882 122 579999999988864211
Q ss_pred CCCCCCCCCCCchHHHH-HHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCC
Q psy12437 468 QRSNDDPPHMNPATDFY-KKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG 532 (901)
Q Consensus 468 ~~~~~~~~~~~~a~~fY-~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~ 532 (901)
..- .+++.++.+.||.|..+.+..+..+-..|..|++.|||..++.++.+.
T Consensus 118 --------------~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 118 --------------ADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred --------------hHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 111 567788889999887777666667788899999999999999987663
No 19
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.51 E-value=2e-06 Score=85.08 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=103.9
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcc
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENIL 396 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~l 396 (901)
.+||||+|.+.. ..-++.++++|...++.|+++. +||||+|++..+.+- . +.+.
T Consensus 3 v~~vlD~S~SM~-~~rl~~ak~a~~~l~~~l~~~~--~~~li~F~~~~~~~~--~----------------~~~~----- 56 (155)
T cd01466 3 LVAVLDVSGSMA-GDKLQLVKHALRFVISSLGDAD--RLSIVTFSTSAKRLS--P----------------LRRM----- 56 (155)
T ss_pred EEEEEECCCCCC-cHHHHHHHHHHHHHHHhCCCcc--eEEEEEecCCccccC--C----------------Cccc-----
Confidence 579999987543 2357888999999999998766 899999998754310 0 0000
Q ss_pred cchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC-----CCEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy12437 397 VNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-----GGRITIFQTCLPNRGPGALQSRENPNQRSN 471 (901)
Q Consensus 397 v~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~ 471 (901)
-.+.+..+.++++.+. ....++++.||..|..+++.. ...|+++++|.++.|...
T Consensus 57 --~~~~~~~~~~~i~~~~------~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~~------------ 116 (155)
T cd01466 57 --TAKGKRSAKRVVDGLQ------AGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAVV------------ 116 (155)
T ss_pred --CHHHHHHHHHHHHhcc------CCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchhh------------
Confidence 0123455666777653 356789999999999998642 257999999988765100
Q ss_pred CCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEe
Q psy12437 472 DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHI 527 (901)
Q Consensus 472 ~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y 527 (901)
.++.+.++.|..+.++. ..|..+|..|+..|||+.++.
T Consensus 117 -----------------~~~~~~~v~v~~igig~-~~~~~~l~~iA~~t~G~~~~~ 154 (155)
T cd01466 117 -----------------LRADNAPIPIHTFGLGA-SHDPALLAFIAEITGGTFSYV 154 (155)
T ss_pred -----------------hcccCCCceEEEEecCC-CCCHHHHHHHHhccCceEEEe
Confidence 01223678888888764 468899999999999998874
No 20
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.51 E-value=3.1e-06 Score=86.64 Aligned_cols=166 Identities=17% Similarity=0.219 Sum_probs=108.2
Q ss_pred CCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy12437 311 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (901)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p 390 (901)
...|-..+||||+|.+... .-++.++++++..|+.++++. +||||+|++.++.+--..
T Consensus 10 ~~~p~~vv~llD~SgSM~~-~~l~~ak~~~~~ll~~l~~~d--~v~lv~F~~~~~~~~~~~------------------- 67 (190)
T cd01463 10 ATSPKDIVILLDVSGSMTG-QRLHLAKQTVSSILDTLSDND--FFNIITFSNEVNPVVPCF------------------- 67 (190)
T ss_pred ccCCceEEEEEECCCCCCc-HHHHHHHHHHHHHHHhCCCCC--EEEEEEeCCCeeEEeeec-------------------
Confidence 3567889999999986432 347889999999999998766 899999999877531000
Q ss_pred CCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---C-------C--CEEEEEecCCCCCCCC
Q psy12437 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---T-------G--GRITIFQTCLPNRGPG 458 (901)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~-------G--GrI~~F~~g~pt~GpG 458 (901)
...++....+.++.+...|+.|.. ...++++.||..|...+.. . + ..|+++++|.++.+.
T Consensus 68 -~~~~~~~~~~~~~~~~~~l~~l~~------~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~- 139 (190)
T cd01463 68 -NDTLVQATTSNKKVLKEALDMLEA------KGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYK- 139 (190)
T ss_pred -ccceEecCHHHHHHHHHHHhhCCC------CCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHh-
Confidence 001111112234445555665542 3457899999999988864 1 1 368899999866321
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHHHHH-HHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCC
Q psy12437 459 ALQSRENPNQRSNDDPPHMNPATDFYKKIAL-ECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (901)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~-~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~ 529 (901)
+...++.. ...+.++.|..|.++.+..|...|..|+..+||..++.++
T Consensus 140 -----------------------~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~~~~G~~~~i~~ 188 (190)
T cd01463 140 -----------------------EIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQS 188 (190)
T ss_pred -----------------------HHHHHhcccccCCCcEEEEEEecCCccccchHHHHHHhhcCCeEEEccc
Confidence 11111111 1112246666666666656889999999999999998765
No 21
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.51 E-value=2.2e-06 Score=88.98 Aligned_cols=173 Identities=15% Similarity=0.145 Sum_probs=112.3
Q ss_pred CCCCcEEEEEEEcchhHHh-----hchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCcc
Q psy12437 311 PPQPAMYLFLLDVSQIAAQ-----SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDID 385 (901)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~-----~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~ 385 (901)
...|..++||||+|.+... ...++.+++++...++.++++. +||||+|++.+.- ... .+. +++
T Consensus 17 ~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~--~v~lv~F~~~~~~---~~~---~~~-~~p--- 84 (206)
T cd01456 17 PQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGT--RLGLWTFSGDGDN---PLD---VRV-LVP--- 84 (206)
T ss_pred cCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCc--eEEEEEecCCCCC---Ccc---ccc-ccc---
Confidence 5678899999999986541 2368899999999999997665 8999999985421 000 000 100
Q ss_pred ccCCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC-CEEEEEecCCCCCCCCcccCCC
Q psy12437 386 DIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG-GRITIFQTCLPNRGPGALQSRE 464 (901)
Q Consensus 386 d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G-GrI~~F~~g~pt~GpG~l~~~~ 464 (901)
..|.....--.....++.+.+.|+.|. .....+.++.||..|..++.... ..|+++++|.++.|...+
T Consensus 85 --~~~~~~~~~~~~~~~~~~l~~~i~~i~-----~~~G~T~l~~aL~~a~~~l~~~~~~~iillTDG~~~~~~~~~---- 153 (206)
T cd01456 85 --KGCLTAPVNGFPSAQRSALDAALNSLQ-----TPTGWTPLAAALAEAAAYVDPGRVNVVVLITDGEDTCGPDPC---- 153 (206)
T ss_pred --ccccccccCCCCcccHHHHHHHHHhhc-----CCCCcChHHHHHHHHHHHhCCCCcceEEEEcCCCccCCCCHH----
Confidence 001000000000024566777777774 13456899999999999996322 689999999877653110
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHH-hhCCcEEEEEEecCCccCchhhhhccccCCceE
Q psy12437 465 NPNQRSNDDPPHMNPATDFYKKIALEC-TSFYIAVDLFILNSQYVDLATLSGVSKFSSGCI 524 (901)
Q Consensus 465 ~~~~~~~~~~~~~~~a~~fY~~la~~~-~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v 524 (901)
+..++++... ...+|.|+++.+..+ .|...|..++..|||..
T Consensus 154 -----------------~~~~~~~~~~~~~~~i~i~~igiG~~-~~~~~l~~iA~~tgG~~ 196 (206)
T cd01456 154 -----------------EVARELAKRRTPAPPIKVNVIDFGGD-ADRAELEAIAEATGGTY 196 (206)
T ss_pred -----------------HHHHHHHHhcCCCCCceEEEEEecCc-ccHHHHHHHHHhcCCeE
Confidence 1112222211 225899999998765 67889999999999988
No 22
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=98.45 E-value=1.2e-05 Score=97.86 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=110.1
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHH-hcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQL-KSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L-~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
+...+||||+|.+......+..++++++..| +.++.+. +||||+|++..++.. . +.+..
T Consensus 304 ~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~D--rVGLVtFsssA~vl~---p---------------Lt~It 363 (863)
T TIGR00868 304 QRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGS--WVGMVTFDSAAYIKN---E---------------LIQIT 363 (863)
T ss_pred CceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCC--EEEEEEECCceeEee---c---------------cccCC
Confidence 4568999999987543345777888888766 4455555 999999999866421 0 01111
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCcccCCCCCC
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQSRENPN 467 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~GpG~l~~~~~~~ 467 (901)
. ...++.|...|.. ....+++++.||..|..+|+. .++.|+++++|-.+.+
T Consensus 364 s------~~dr~aL~~~L~~-------~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~----------- 419 (863)
T TIGR00868 364 S------SAERDALTANLPT-------AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTI----------- 419 (863)
T ss_pred c------HHHHHHHHHhhcc-------ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCH-----------
Confidence 0 1123333333321 134679999999999999974 3578999998864321
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHH
Q psy12437 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSR 547 (901)
Q Consensus 468 ~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~ 547 (901)
..++..+.+.||.|..|.++.+.- ..|..||+.|||..|+..+- .+...|...|.+
T Consensus 420 -----------------~~~l~~lk~~gVtI~TIg~G~dad--~~L~~IA~~TGG~~f~asd~-----~dl~~L~dAF~~ 475 (863)
T TIGR00868 420 -----------------SSCFEEVKQSGAIIHTIALGPSAA--KELEELSDMTGGLRFYASDQ-----ADNNGLIDAFGA 475 (863)
T ss_pred -----------------HHHHHHHHHcCCEEEEEEeCCChH--HHHHHHHHhcCCEEEEeCCH-----HHHHHHHHHHHH
Confidence 134445667899999999887642 46899999999999988641 123455555554
Q ss_pred h
Q psy12437 548 Y 548 (901)
Q Consensus 548 ~ 548 (901)
+
T Consensus 476 i 476 (863)
T TIGR00868 476 L 476 (863)
T ss_pred H
Confidence 4
No 23
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.27 E-value=0.00054 Score=82.73 Aligned_cols=285 Identities=15% Similarity=0.150 Sum_probs=160.5
Q ss_pred CCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy12437 311 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (901)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p 390 (901)
++.|.-++||||+|.+.. .+-++.+++++..+|..|+++. +|+||+|++.+..+. .. . .+
T Consensus 268 ~~~p~~vvfvlD~SgSM~-g~~i~~ak~al~~~l~~L~~~d--~~~ii~F~~~~~~~~--~~-----~----------~~ 327 (596)
T TIGR03788 268 QVLPRELVFVIDTSGSMA-GESIEQAKSALLLALDQLRPGD--RFNIIQFDSDVTLLF--PV-----P----------VP 327 (596)
T ss_pred cCCCceEEEEEECCCCCC-CccHHHHHHHHHHHHHhCCCCC--EEEEEEECCcceEec--cc-----c----------cc
Confidence 456778999999998643 3347788999999999998776 899999999987641 10 0 00
Q ss_pred CCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC--C--CEEEEEecCCCCCCCCcccCCCCC
Q psy12437 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT--G--GRITIFQTCLPNRGPGALQSRENP 466 (901)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~--G--GrI~~F~~g~pt~GpG~l~~~~~~ 466 (901)
. -.+....+...|+.|. ...++.+..||..|+...... + ..|+++++|..+ .
T Consensus 328 ~-------~~~~~~~a~~~i~~l~------a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~--------~--- 383 (596)
T TIGR03788 328 A-------TAHNLARARQFVAGLQ------ADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVG--------N--- 383 (596)
T ss_pred C-------CHHHHHHHHHHHhhCC------CCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCC--------C---
Confidence 0 0112233444555553 235688999999999875432 1 369999998521 0
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHH
Q psy12437 467 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 546 (901)
Q Consensus 467 ~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~ 546 (901)
..+..+.+. ....++.|..|.++.+ ++-..|..|++.+||..++..+-. ...+.+.+.+.
T Consensus 384 -------------~~~~~~~~~--~~~~~~ri~tvGiG~~-~n~~lL~~lA~~g~G~~~~i~~~~----~~~~~~~~~l~ 443 (596)
T TIGR03788 384 -------------EDALFQLIR--TKLGDSRLFTVGIGSA-PNSYFMRKAAQFGRGSFTFIGSTD----EVQRKMSQLFA 443 (596)
T ss_pred -------------HHHHHHHHH--HhcCCceEEEEEeCCC-cCHHHHHHHHHcCCCEEEECCCHH----HHHHHHHHHHH
Confidence 012233332 2234567777777654 677889999999999877654311 12334444444
Q ss_pred HhhhcccccceeEEEEecCCceEEEEecceeccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEeeecCCCe
Q psy12437 547 RYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDR 626 (901)
Q Consensus 547 ~~l~~~~g~~a~l~vr~S~gl~i~~~~G~~~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allYt~~~G~r 626 (901)
+ +.....-+..+++.... +..++ -..++.+-....+.+.-++... ...+ .+......+..
T Consensus 444 ~-~~~p~l~~v~v~~~~~~---~~~v~---------P~~~p~L~~g~~l~v~g~~~~~---~~~i----~v~g~~~~~~~ 503 (596)
T TIGR03788 444 K-LEQPALTDIALTFDNGN---AADVY---------PSPIPDLYRGEPLQIAIKLQQA---AGEL----QLTGRTGSQPW 503 (596)
T ss_pred h-hcCeEEEEEEEEEcCCc---cceec---------cCCCccccCCCEEEEEEEecCC---CCeE----EEEEEcCCceE
Confidence 3 33444555555553211 22221 1235555666666666664321 1112 22333233332
Q ss_pred EEEEEecccccccCHHHHHhccCHHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHh
Q psy12437 627 RIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSL-SDAREAFLNVVCDVLSTYKMT 691 (901)
Q Consensus 627 riRV~T~~l~vt~~~~~v~~~~D~~a~~~~lar~~~~~~~~~~~-~d~r~~l~~~li~~l~~yr~~ 691 (901)
. ..+++... .+-..+-.++||..+........ ..-.+.+.+.++++-.+|+-.
T Consensus 504 ~-----~~~~~~~~-------~~~~~l~~lwA~~~I~~L~~~~~~~~~~~~~~~~Ii~Lsl~y~lv 557 (596)
T TIGR03788 504 S-----QQLDLDSA-------APGKGIDKLWARRKIDSLEDSLRYGANEEKVKDQVTALALNHHLV 557 (596)
T ss_pred E-----EEEecCCC-------CCcchHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhCCC
Confidence 2 22222211 13344667888877766543211 011234667788888888764
No 24
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=98.27 E-value=2.3e-05 Score=79.10 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=95.9
Q ss_pred EEEEEEEcchhHHhh----chHHHHHHHHHHHH----hcCCCCCCceEEEEEEcc-EEEEEEcCCCCCCCceeeccCccc
Q psy12437 316 MYLFLLDVSQIAAQS----GYLYTVCEVLLNQL----KSMPGDRRTSIAIITYDS-AVHFYSLAEGQTQPSQMILTDIDD 386 (901)
Q Consensus 316 ~~vFvID~s~~a~~~----g~l~~~~~si~~~L----~~lp~~~~~~VglItfd~-~V~~y~l~~~~~~~~~~v~~dl~d 386 (901)
+-+|+||+|....+. ..|++.++++...+ +..|++ +||||+|.. ..++
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~---~vGlv~fag~~a~v-------------------- 61 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPEN---NVGLMTMAGNSPEV-------------------- 61 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCc---cEEEEEecCCceEE--------------------
Confidence 468999999876542 36888888877664 555554 899999976 3222
Q ss_pred cCCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---C--CCEEEEEecCCCCCCCCccc
Q psy12437 387 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---T--GGRITIFQTCLPNRGPGALQ 461 (901)
Q Consensus 387 ~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~--GGrI~~F~~g~pt~GpG~l~ 461 (901)
++++......+...|+.+. ......+|.||..|...|+. . ..||++|.+++.+.=+|
T Consensus 62 ---------~~plT~D~~~~~~~L~~i~------~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~--- 123 (187)
T cd01452 62 ---------LVTLTNDQGKILSKLHDVQ------PKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEK--- 123 (187)
T ss_pred ---------EECCCCCHHHHHHHHHhCC------CCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHH---
Confidence 1112223455666777664 23556799999999999964 2 35999999977332111
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccC
Q psy12437 462 SRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS 520 (901)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~T 520 (901)
+ ..++++++.++||.||++.++...-+..-|..+++..
T Consensus 124 --------------------~-i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~ 161 (187)
T cd01452 124 --------------------D-LVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAV 161 (187)
T ss_pred --------------------H-HHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHh
Confidence 1 3478999999999999999876644444444444443
No 25
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=98.27 E-value=2.8e-05 Score=79.27 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=91.4
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
+.-.+|+||+|.+... .+ ...++.++..++.+.. ++.+||+|+|++..++. .+..
T Consensus 4 ~~Dvv~llD~SgSm~~-~~-~~~~~~~~~l~~~~~~-~~~rvglv~Fs~~~~~~~~l~~--------------------- 59 (185)
T cd01474 4 HFDLYFVLDKSGSVAA-NW-IEIYDFVEQLVDRFNS-PGLRFSFITFSTRATKILPLTD--------------------- 59 (185)
T ss_pred ceeEEEEEeCcCchhh-hH-HHHHHHHHHHHHHcCC-CCcEEEEEEecCCceEEEeccc---------------------
Confidence 4557999999986432 22 2334555655554422 23699999999875431 1110
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhh--cCCCC-----EEEEEecCCCCCCCCcccCCCC
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL--QPTGG-----RITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll--~~~GG-----rI~~F~~g~pt~GpG~l~~~~~ 465 (901)
..+.+...++.|.... ....+++|.||..|...+ ...|| .|+++++|.++-..+.-
T Consensus 60 ---------~~~~~~~~l~~l~~~~---~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~----- 122 (185)
T cd01474 60 ---------DSSAIIKGLEVLKKVT---PSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKY----- 122 (185)
T ss_pred ---------cHHHHHHHHHHHhccC---CCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcc-----
Confidence 0012333444443321 236799999999999876 33444 38888888764211000
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEE-EeCCCC
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIH-HIPLYS 531 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~-~y~~f~ 531 (901)
-...+.++.+.||.|..+.. ...+..+|..++..++ .+| ...+|.
T Consensus 123 ------------------~~~~a~~l~~~gv~i~~vgv--~~~~~~~L~~iA~~~~-~~f~~~~~~~ 168 (185)
T cd01474 123 ------------------PEHEAKLSRKLGAIVYCVGV--TDFLKSQLINIADSKE-YVFPVTSGFQ 168 (185)
T ss_pred ------------------hHHHHHHHHHcCCEEEEEee--chhhHHHHHHHhCCCC-eeEecCccHH
Confidence 02334566678886655555 5678899999998875 444 334444
No 26
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.27 E-value=2.8e-05 Score=77.50 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=96.2
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCc
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 395 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~ 395 (901)
.+|+||+|.+.. ..-++.++++++..+..+... .+.+||||+|++..++.- . +.+
T Consensus 3 vv~vlD~SgSm~-~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~-~----------~~~------------ 58 (164)
T cd01472 3 IVFLVDGSESIG-LSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEF-Y----------LNT------------ 58 (164)
T ss_pred EEEEEeCCCCCC-HHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEE-e----------cCC------------
Confidence 589999987543 335788888888888777532 345999999998765421 0 000
Q ss_pred ccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC--------CCEEEEEecCCCCCCCCcccCCCCCC
Q psy12437 396 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT--------GGRITIFQTCLPNRGPGALQSRENPN 467 (901)
Q Consensus 396 lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~--------GGrI~~F~~g~pt~GpG~l~~~~~~~ 467 (901)
...++.+...|+.|+.. ...+.+|.||..|...+... ...|+++++|.++.+.
T Consensus 59 ----~~~~~~~~~~l~~l~~~-----~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~---------- 119 (164)
T cd01472 59 ----YRSKDDVLEAVKNLRYI-----GGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDV---------- 119 (164)
T ss_pred ----CCCHHHHHHHHHhCcCC-----CCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchH----------
Confidence 01234455566766531 45578999999999988641 2357777777432110
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCc-eEEEeCC
Q psy12437 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG-CIHHIPL 529 (901)
Q Consensus 468 ~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG-~v~~y~~ 529 (901)
...+..+.+.||.|..+.+.. .|...|..++..++| .++.+..
T Consensus 120 -----------------~~~~~~l~~~gv~i~~ig~g~--~~~~~L~~ia~~~~~~~~~~~~~ 163 (164)
T cd01472 120 -----------------EEPAVELKQAGIEVFAVGVKN--ADEEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred -----------------HHHHHHHHHCCCEEEEEECCc--CCHHHHHHHHCCCchheEEeccC
Confidence 122334556777655555444 499999999999987 5555543
No 27
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.20 E-value=1.7e-05 Score=79.00 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=100.5
Q ss_pred EEEEEEcchhHHhh----chHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy12437 317 YLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 317 ~vFvID~s~~a~~~----g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
++||||+|.+.... ..++.+++++...++.+|++ +|||++|++..++ ..
T Consensus 2 vv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~l~~f~~~~~~--------------~~---------- 54 (172)
T PF13519_consen 2 VVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLPGD---RVGLVSFSDSSRT--------------LS---------- 54 (172)
T ss_dssp EEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHTTS---EEEEEEESTSCEE--------------EE----------
T ss_pred EEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCCCC---EEEEEEecccccc--------------cc----------
Confidence 68999999875543 25888999999999888744 8999999875321 00
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC---CEEEEEecCCCCCCCCcccCCCCCCCC
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG---GRITIFQTCLPNRGPGALQSRENPNQR 469 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G---GrI~~F~~g~pt~GpG~l~~~~~~~~~ 469 (901)
++...++.+.+.++.+.... ......+++.||..|..++.... ..|++|++|.++.
T Consensus 55 -----~~t~~~~~~~~~l~~~~~~~--~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~-------------- 113 (172)
T PF13519_consen 55 -----PLTSDKDELKNALNKLSPQG--MPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS-------------- 113 (172)
T ss_dssp -----EEESSHHHHHHHHHTHHHHG----SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------
T ss_pred -----cccccHHHHHHHhhcccccc--cCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------
Confidence 11123344555566554211 23456899999999999997643 4677777764330
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeC
Q psy12437 470 SNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIP 528 (901)
Q Consensus 470 ~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~ 528 (901)
+ ..+.+..+.+.+|.|.++.+..+...-..|..+++.|||..+...
T Consensus 114 ------------~-~~~~~~~~~~~~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~~ 159 (172)
T PF13519_consen 114 ------------S-DIEAAKALKQQGITIYTVGIGSDSDANEFLQRLAEATGGRYFHVD 159 (172)
T ss_dssp ------------H-HHHHHHHHHCTTEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE-
T ss_pred ------------c-hhHHHHHHHHcCCeEEEEEECCCccHHHHHHHHHHhcCCEEEEec
Confidence 0 113777888999999999998887766789999999999988873
No 28
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.20 E-value=4.7e-05 Score=78.47 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=102.0
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCCCC
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 394 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p~~~~ 394 (901)
++||||+|.+... .-++.+++++...++.|+. ..+.+||+|+|++.++.. .+...
T Consensus 3 i~~vlD~SgSM~~-~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~---------------------- 59 (198)
T cd01470 3 IYIALDASDSIGE-EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDF---------------------- 59 (198)
T ss_pred EEEEEECCCCccH-HHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccC----------------------
Confidence 7899999986433 3478889999999988763 224589999999886542 22110
Q ss_pred cccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---------CC--CEEEEEecCCCCCCCCcccCC
Q psy12437 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---------TG--GRITIFQTCLPNRGPGALQSR 463 (901)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---------~G--GrI~~F~~g~pt~GpG~l~~~ 463 (901)
....+..+...|+.+.... ......+.++.||..|...+.. .+ -.|++|++|.+|.|....
T Consensus 60 ----~~~~~~~~~~~l~~~~~~~-~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~--- 131 (198)
T cd01470 60 ----NSNDADDVIKRLEDFNYDD-HGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPL--- 131 (198)
T ss_pred ----CCCCHHHHHHHHHhCCccc-ccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChh---
Confidence 0001233444556554211 1123567899999988876521 11 247899999988763110
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHH------HhhCCcEEEEEEecCCccCchhhhhccccCCc--eEEEeCCCC
Q psy12437 464 ENPNQRSNDDPPHMNPATDFYKKIALE------CTSFYIAVDLFILNSQYVDLATLSGVSKFSSG--CIHHIPLYS 531 (901)
Q Consensus 464 ~~~~~~~~~~~~~~~~a~~fY~~la~~------~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG--~v~~y~~f~ 531 (901)
.+.+.++++... +.+.+|+|..|.+.. .+|-.+|..|+..||| .+|...+|.
T Consensus 132 ---------------~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~-~~~~~~L~~iA~~~~g~~~~f~~~~~~ 191 (198)
T cd01470 132 ---------------PTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGD-DVNKEELNDLASKKDNERHFFKLKDYE 191 (198)
T ss_pred ---------------HHHHHHHHHHhcccccccchhcceeEEEEecCc-ccCHHHHHHHhcCCCCCceEEEeCCHH
Confidence 112223332211 234466666655543 4789999999999999 466665543
No 29
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=98.19 E-value=9.1e-05 Score=81.45 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=102.0
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhc-CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~-lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p 390 (901)
..|...+||||+|.+... .+..+++++...|+. +..+. +||||+|++.+++.. +.
T Consensus 51 ~~p~~vvlvlD~SgSM~~--~~~~a~~a~~~~l~~~l~~~d--~v~lv~f~~~~~~~~--------------~~------ 106 (296)
T TIGR03436 51 DLPLTVGLVIDTSGSMRN--DLDRARAAAIRFLKTVLRPND--RVFVVTFNTRLRLLQ--------------DF------ 106 (296)
T ss_pred CCCceEEEEEECCCCchH--HHHHHHHHHHHHHHhhCCCCC--EEEEEEeCCceeEee--------------cC------
Confidence 358899999999976442 477788888888876 65444 899999998775421 00
Q ss_pred CCCCcccchhhhHHHHHHHHHhCCcccc---------CCCCCCCcHHHHHHHH-HHhhcC-C----CC-EEEEEecCCCC
Q psy12437 391 SPENILVNLSECYDMIVDLLKQLPGKFK---------DSLDSGSALGPALQAA-FKLLQP-T----GG-RITIFQTCLPN 454 (901)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~---------~~~~~~~~~G~AL~~A-~~ll~~-~----GG-rI~~F~~g~pt 454 (901)
...++.|...|+.|..... ......++++.||..| ..++.. . |- .|++|++|..+
T Consensus 107 ---------t~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~ 177 (296)
T TIGR03436 107 ---------TSDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDN 177 (296)
T ss_pred ---------CCCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCc
Confidence 0123445566666643110 0124567788887544 445543 2 32 36666666321
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc------------cCchhhhhccccCCc
Q psy12437 455 RGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY------------VDLATLSGVSKFSSG 522 (901)
Q Consensus 455 ~GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~------------~~l~~l~~l~~~TGG 522 (901)
. ...-++++...|.+.+|.|..+.+.... .+-..|..+|+.|||
T Consensus 178 ~------------------------~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG 233 (296)
T TIGR03436 178 R------------------------SRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGG 233 (296)
T ss_pred c------------------------hHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCC
Confidence 1 1234677888888999998888775321 245689999999999
Q ss_pred eEEEe
Q psy12437 523 CIHHI 527 (901)
Q Consensus 523 ~v~~y 527 (901)
..++.
T Consensus 234 ~~~~~ 238 (296)
T TIGR03436 234 RAFYV 238 (296)
T ss_pred eEecc
Confidence 97665
No 30
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.17 E-value=4.7e-05 Score=76.16 Aligned_cols=157 Identities=22% Similarity=0.267 Sum_probs=103.5
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 393 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~ 393 (901)
|.-++||+|+|.+.. ...++.++++|...+..++.+. +|++|+|++.++.+- .. +.+ .
T Consensus 2 ~~~v~~vlD~S~SM~-~~~~~~~~~al~~~l~~l~~~~--~~~l~~Fs~~~~~~~--~~---------------~~~--~ 59 (171)
T cd01461 2 PKEVVFVIDTSGSMS-GTKIEQTKEALLTALKDLPPGD--YFNIIGFSDTVEEFS--PS---------------SVS--A 59 (171)
T ss_pred CceEEEEEECCCCCC-ChhHHHHHHHHHHHHHhCCCCC--EEEEEEeCCCceeec--Cc---------------cee--C
Confidence 566899999998653 2347888999999999897665 899999998765431 00 000 0
Q ss_pred CcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCC
Q psy12437 394 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRS 470 (901)
Q Consensus 394 ~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~ 470 (901)
+ .+....+.+.|+.+.. ...+.++.||..|...+.. ....|++|++|.++.
T Consensus 60 ----~-~~~~~~~~~~l~~~~~------~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~--------------- 113 (171)
T cd01461 60 ----T-AENVAAAIEYVNRLQA------LGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN--------------- 113 (171)
T ss_pred ----C-HHHHHHHHHHHHhcCC------CCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC---------------
Confidence 0 1112223344444421 4557899999999998864 336778888876211
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCC
Q psy12437 471 NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (901)
Q Consensus 471 ~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~ 529 (901)
..+++ +.++++.+.++.|..+.++. ..+-..|..++..|||..++..+
T Consensus 114 ---------~~~~~-~~~~~~~~~~i~i~~i~~g~-~~~~~~l~~ia~~~gG~~~~~~~ 161 (171)
T cd01461 114 ---------ESQIL-KNVREALSGRIRLFTFGIGS-DVNTYLLERLAREGRGIARRIYE 161 (171)
T ss_pred ---------HHHHH-HHHHHhcCCCceEEEEEeCC-ccCHHHHHHHHHcCCCeEEEecC
Confidence 11233 44445555578777777654 35678899999999999998866
No 31
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=98.09 E-value=6.2e-05 Score=74.22 Aligned_cols=150 Identities=25% Similarity=0.293 Sum_probs=100.3
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcc
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENIL 396 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~l 396 (901)
.+||||+|...... .+.++++|+..|+.|+++. ++.||+||+.+..|. .+ +
T Consensus 3 vvilvD~S~Sm~g~--~~~~k~al~~~l~~L~~~d--~fnii~f~~~~~~~~--~~-----------------------~ 53 (155)
T PF13768_consen 3 VVILVDTSGSMSGE--KELVKDALRAILRSLPPGD--RFNIIAFGSSVRPLF--PG-----------------------L 53 (155)
T ss_pred EEEEEeCCCCCCCc--HHHHHHHHHHHHHhCCCCC--EEEEEEeCCEeeEcc--hh-----------------------H
Confidence 68999999865432 3889999999999998877 999999999877542 11 1
Q ss_pred cchh-hhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC--CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCC
Q psy12437 397 VNLS-ECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP--TGGRITIFQTCLPNRGPGALQSRENPNQRSNDD 473 (901)
Q Consensus 397 v~l~-e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~--~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~~~ 473 (901)
++.+ +.++.....|+.+. .....+.++.||..|...+.. .--.|+++++|.++.+.
T Consensus 54 ~~~~~~~~~~a~~~I~~~~-----~~~G~t~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~---------------- 112 (155)
T PF13768_consen 54 VPATEENRQEALQWIKSLE-----ANSGGTDLLAALRAALALLQRPGCVRAIILLTDGQPVSGE---------------- 112 (155)
T ss_pred HHHhHHHHHHHHHHHHHhc-----ccCCCccHHHHHHHHHHhcccCCCccEEEEEEeccCCCCH----------------
Confidence 1111 22333344444442 126778999999999998733 34688999988764322
Q ss_pred CCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEE
Q psy12437 474 PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHH 526 (901)
Q Consensus 474 ~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~ 526 (901)
....+.+. .+. ..+.|+.|.+.. ..+-..|..|++.|||..++
T Consensus 113 -------~~i~~~v~-~~~-~~~~i~~~~~g~-~~~~~~L~~LA~~~~G~~~f 155 (155)
T PF13768_consen 113 -------EEILDLVR-RAR-GHIRIFTFGIGS-DADADFLRELARATGGSFHF 155 (155)
T ss_pred -------HHHHHHHH-hcC-CCceEEEEEECC-hhHHHHHHHHHHcCCCEEEC
Confidence 12222222 222 456677777655 35678899999999998753
No 32
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.02 E-value=0.00011 Score=74.87 Aligned_cols=160 Identities=13% Similarity=0.092 Sum_probs=102.2
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-------CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccc
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-------DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDD 386 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-------~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d 386 (901)
|--.+||||+|...-.+ -++.+++.++..++.+.. ....+||+|+|++..++.-
T Consensus 2 ~~dvv~vlD~S~Sm~~~-~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~------------------ 62 (186)
T cd01480 2 PVDITFVLDSSESVGLQ-NFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEA------------------ 62 (186)
T ss_pred CeeEEEEEeCCCccchh-hHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeE------------------
Confidence 34478999998764433 366677777777776622 1235999999998754310
Q ss_pred cCCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCccc
Q psy12437 387 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQ 461 (901)
Q Consensus 387 ~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~GpG~l~ 461 (901)
|+.. . ...+..+.+.|+.|.. ....+++|.||..|...+.. ....|++|++|.++.+..
T Consensus 63 ---~l~~-~----~~~~~~l~~~i~~l~~-----~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~--- 126 (186)
T cd01480 63 ---GFLR-D----IRNYTSLKEAVDNLEY-----IGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPD--- 126 (186)
T ss_pred ---eccc-c----cCCHHHHHHHHHhCcc-----CCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcc---
Confidence 0000 0 0124556677777742 13468999999999998853 124677788877532110
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCC
Q psy12437 462 SRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYS 531 (901)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~ 531 (901)
.-..+.+.++.+.||.|-.+.+.. .+...|..++...+|. |+.++|.
T Consensus 127 --------------------~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~-~~~~~~~ 173 (186)
T cd01480 127 --------------------GGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSA-LYRENFA 173 (186)
T ss_pred --------------------hhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcch-hhhcchh
Confidence 112455667778888766666544 7888899999888776 6666665
No 33
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.93 E-value=0.00024 Score=74.79 Aligned_cols=169 Identities=17% Similarity=0.229 Sum_probs=106.4
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
|.-.+|+||+|...-. .-++.+++.++..++.+.-. ..++||+|+|++.+++.- ++.+
T Consensus 2 ~~DlvfllD~S~Sm~~-~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~--------------~l~~------ 60 (224)
T cd01475 2 PTDLVFLIDSSRSVRP-ENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEF--------------PLGR------ 60 (224)
T ss_pred CccEEEEEeCCCCCCH-HHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEe--------------cccc------
Confidence 4457999999876332 24788889999888876432 356999999999876420 1110
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHh-hcC-CC--------CE-EEEEecCCCCCCCCccc
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL-LQP-TG--------GR-ITIFQTCLPNRGPGALQ 461 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l-l~~-~G--------Gr-I~~F~~g~pt~GpG~l~ 461 (901)
+ ..++.|...|+.+... ...+.+|.||..|... +.. .| -| |++|++|.++-
T Consensus 61 --~-----~~~~~l~~~i~~i~~~-----~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~------ 122 (224)
T cd01475 61 --F-----KSKADLKRAVRRMEYL-----ETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD------ 122 (224)
T ss_pred --c-----CCHHHHHHHHHhCcCC-----CCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc------
Confidence 0 1234456666766432 2456789999999864 321 11 13 57787775321
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCc-eEEEeCCCCCCcchhHHH
Q psy12437 462 SRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG-CIHHIPLYSGKNMSHVYQ 540 (901)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG-~v~~y~~f~~~~~~~~~~ 540 (901)
-..+.+.++.+.||.| |++.....|..+|..++..+++ .++..++|+. -+.
T Consensus 123 ---------------------~~~~~a~~lk~~gv~i--~~VgvG~~~~~~L~~ias~~~~~~~f~~~~~~~-----l~~ 174 (224)
T cd01475 123 ---------------------DVSEVAAKARALGIEM--FAVGVGRADEEELREIASEPLADHVFYVEDFST-----IEE 174 (224)
T ss_pred ---------------------cHHHHHHHHHHCCcEE--EEEeCCcCCHHHHHHHhCCCcHhcEEEeCCHHH-----HHH
Confidence 0346677888888755 5444445788999999987654 6777677653 245
Q ss_pred HHHHHHHhh
Q psy12437 541 LDRMFSRYL 549 (901)
Q Consensus 541 ~~~dl~~~l 549 (901)
+...|.+.+
T Consensus 175 ~~~~l~~~~ 183 (224)
T cd01475 175 LTKKFQGKI 183 (224)
T ss_pred Hhhhccccc
Confidence 555554433
No 34
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.92 E-value=0.00022 Score=70.22 Aligned_cols=146 Identities=19% Similarity=0.194 Sum_probs=98.7
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCc
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 395 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~ 395 (901)
.+|+||+|.... ...++.+++.+...+..+.. +.+.+||||+|++.....- ++. ...
T Consensus 3 i~~llD~S~Sm~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~--------------~~~-------~~~ 60 (161)
T cd01450 3 IVFLLDGSESVG-PENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEF--------------SLN-------DYK 60 (161)
T ss_pred EEEEEeCCCCcC-HHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEE--------------ECC-------CCC
Confidence 579999987543 33677888888888877754 2355999999998543210 000 000
Q ss_pred ccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC-------CEEEEEecCCCCCCCCcccCCCCCCC
Q psy12437 396 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG-------GRITIFQTCLPNRGPGALQSRENPNQ 468 (901)
Q Consensus 396 lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G-------GrI~~F~~g~pt~GpG~l~~~~~~~~ 468 (901)
.+..+...|+.+..... ..+.++.||..|...+.... ..|++|++|.++.+.
T Consensus 61 ------~~~~~~~~i~~~~~~~~----~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~----------- 119 (161)
T cd01450 61 ------SKDDLLKAVKNLKYLGG----GGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGG----------- 119 (161)
T ss_pred ------CHHHHHHHHHhcccCCC----CCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCc-----------
Confidence 13345555666543211 47899999999999887532 368899999876643
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCC
Q psy12437 469 RSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSS 521 (901)
Q Consensus 469 ~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TG 521 (901)
-..++.+++.+.++.|..+.++. .+...|..|+..||
T Consensus 120 --------------~~~~~~~~~~~~~v~v~~i~~g~--~~~~~l~~la~~~~ 156 (161)
T cd01450 120 --------------DPKEAAAKLKDEGIKVFVVGVGP--ADEEELREIASCPS 156 (161)
T ss_pred --------------chHHHHHHHHHCCCEEEEEeccc--cCHHHHHHHhCCCC
Confidence 02466667777888888887765 78888999998883
No 35
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.91 E-value=0.00037 Score=70.45 Aligned_cols=156 Identities=13% Similarity=0.146 Sum_probs=101.1
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCCCC
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 394 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p~~~~ 394 (901)
.+|+||.|...-. .-++.+++.++..++.+..+ ..+|||+|+|++..++. .+. |..
T Consensus 3 i~fvlD~S~S~~~-~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~------------~~~--------- 60 (177)
T cd01469 3 IVFVLDGSGSIYP-DDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLN------------EYR--------- 60 (177)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecC------------ccC---------
Confidence 5899999876332 23777888888888877653 35699999999986542 111 100
Q ss_pred cccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhh-c-CCCC------EEEEEecCCCCCCCCcccCCCCC
Q psy12437 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL-Q-PTGG------RITIFQTCLPNRGPGALQSRENP 466 (901)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll-~-~~GG------rI~~F~~g~pt~GpG~l~~~~~~ 466 (901)
+.+.+..+++.++.. ...+.+|.||..|...+ . ..|+ -++++++|..+-|+-
T Consensus 61 -------~~~~~~~~i~~~~~~-----~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~-------- 120 (177)
T cd01469 61 -------TKEEPLSLVKHISQL-----LGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPL-------- 120 (177)
T ss_pred -------CHHHHHHHHHhCccC-----CCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccc--------
Confidence 112244455555421 23489999999998866 2 2332 477888887554320
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc---cCchhhhhccccCCc-eEEEeCCCC
Q psy12437 467 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY---VDLATLSGVSKFSSG-CIHHIPLYS 531 (901)
Q Consensus 467 ~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~---~~l~~l~~l~~~TGG-~v~~y~~f~ 531 (901)
.++.+..+.+.||.|-.+....+. .+..+|..++..+++ .+|..++|+
T Consensus 121 -----------------~~~~~~~~k~~gv~v~~Vgvg~~~~~~~~~~~L~~ias~p~~~h~f~~~~~~ 172 (177)
T cd01469 121 -----------------LKDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASKPPEEHFFNVTDFA 172 (177)
T ss_pred -----------------cHHHHHHHHHCCcEEEEEEecccccccccHHHHHHHhcCCcHHhEEEecCHH
Confidence 034566677788877777776542 347889999998874 566666664
No 36
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=97.91 E-value=0.00022 Score=72.62 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=92.9
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEE-EEcCCCCCCCceeeccCccccCCCCCCC
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHF-YSLAEGQTQPSQMILTDIDDIFLPSPEN 394 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~-y~l~~~~~~~~~~v~~dl~d~f~p~~~~ 394 (901)
++||||+|...-....+..+++.+...++.+.. +.+.+||+|+|++..+. +.+...
T Consensus 3 v~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~---------------------- 60 (186)
T cd01471 3 LYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSP---------------------- 60 (186)
T ss_pred EEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCc----------------------
Confidence 689999998755554578888888888887753 23469999999987653 222210
Q ss_pred cccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC-C------CEEEEEecCCCCCCCCcccCCCCCC
Q psy12437 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-G------GRITIFQTCLPNRGPGALQSRENPN 467 (901)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-G------GrI~~F~~g~pt~GpG~l~~~~~~~ 467 (901)
....+..+.++++.|... ......++++.||..|...+... | ..|+++++|.++.++.
T Consensus 61 ----~~~~~~~~~~~i~~l~~~--~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~--------- 125 (186)
T cd01471 61 ----NSTNKDLALNAIRALLSL--YYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFR--------- 125 (186)
T ss_pred ----cccchHHHHHHHHHHHhC--cCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcc---------
Confidence 001122222333333221 11245688999999999988641 2 3688888887653210
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhcccc
Q psy12437 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF 519 (901)
Q Consensus 468 ~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~ 519 (901)
. .+.+.++.+.|+.|-++.+.. ..|...|..++..
T Consensus 126 ------------~----~~~a~~l~~~gv~v~~igiG~-~~d~~~l~~ia~~ 160 (186)
T cd01471 126 ------------T----LKEARKLRERGVIIAVLGVGQ-GVNHEENRSLVGC 160 (186)
T ss_pred ------------h----hHHHHHHHHCCCEEEEEEeeh-hhCHHHHHHhcCC
Confidence 0 134566677788777666653 4677777776654
No 37
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.91 E-value=0.00037 Score=80.66 Aligned_cols=164 Identities=10% Similarity=0.063 Sum_probs=99.4
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEE-EEcCCCCCCCceeeccCccccCCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHF-YSLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~-y~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
..-++||||+|.+.-...+++.++..+...+..+.. ..+++||+|+|++..+. +.+.....
T Consensus 42 ~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s----------------- 104 (576)
T PTZ00441 42 EVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGAS----------------- 104 (576)
T ss_pred CceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCcc-----------------
Confidence 566899999998755455667788888888877643 34578999999887543 33322110
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC------CEEEEEecCCCCCCCCcccCCCC
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG------GRITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G------GrI~~F~~g~pt~GpG~l~~~~~ 465 (901)
. .+..+..+|..|.... .....+.+|.||..|...+...| +-||||++|.++.+.
T Consensus 105 -----~----Dk~~aL~~I~sL~~~~--~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~-------- 165 (576)
T PTZ00441 105 -----K----DKEQALIIVKSLRKTY--LPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKY-------- 165 (576)
T ss_pred -----c----cHHHHHHHHHHHHhhc--cCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcc--------
Confidence 0 1122223333332210 12346889999999988886533 568889888754210
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhcc----ccCCceEEEeCCCC
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVS----KFSSGCIHHIPLYS 531 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~----~~TGG~v~~y~~f~ 531 (901)
+. .+.+.++.+.||.|-+|.++. ..+...+..++ ..++|.+|.+.+|.
T Consensus 166 ----------------dv-leaAq~LR~~GVeI~vIGVG~-g~n~e~LrlIAgC~p~~g~c~~Y~vadf~ 217 (576)
T PTZ00441 166 ----------------RA-LEESRKLKDRNVKLAVIGIGQ-GINHQFNRLLAGCRPREGKCKFYSDADWE 217 (576)
T ss_pred ----------------cH-HHHHHHHHHCCCEEEEEEeCC-CcCHHHHHHHhccCCCCCCCceEEeCCHH
Confidence 01 134566777888777776653 35555555455 33456777777775
No 38
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.89 E-value=0.00018 Score=73.61 Aligned_cols=153 Identities=23% Similarity=0.276 Sum_probs=91.2
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-------CCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCcc
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-------DRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDID 385 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-------~~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~ 385 (901)
+.=.|||||.|...-. +-++.+++.|+..+..+.. ...+|||+|+|++..++. .|. |..
T Consensus 19 ~~DivfvlD~S~Sm~~-~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~------------d~~ 85 (193)
T cd01477 19 WLDIVFVVDNSKGMTQ-GGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLN------------DLQ 85 (193)
T ss_pred eeeEEEEEeCCCCcch-hhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecc------------ccc
Confidence 5568999999986432 3377788888887765543 224699999999987652 221 110
Q ss_pred ccCCCCCCCcccchhhhHHHHHHHHHh-CCccccCCCCCCCcHHHHHHHHHHhhcC--CC-----CE-EEEEecCCCCCC
Q psy12437 386 DIFLPSPENILVNLSECYDMIVDLLKQ-LPGKFKDSLDSGSALGPALQAAFKLLQP--TG-----GR-ITIFQTCLPNRG 456 (901)
Q Consensus 386 d~f~p~~~~~lv~l~e~~~~i~~lL~~-L~~~~~~~~~~~~~~G~AL~~A~~ll~~--~G-----Gr-I~~F~~g~pt~G 456 (901)
....+.+.|+. +... .....+.+|.||..|..++.. .| .| ||++++|.-+.|
T Consensus 86 ----------------~~~~~~~ai~~~~~~~---~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~ 146 (193)
T cd01477 86 ----------------SFDDLYSQIQGSLTDV---SSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG 146 (193)
T ss_pred ----------------CHHHHHHHHHHHhhcc---ccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC
Confidence 11222233332 1111 112368899999999999864 23 36 666666632111
Q ss_pred CCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCce
Q psy12437 457 PGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGC 523 (901)
Q Consensus 457 pG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~ 523 (901)
-+ . ..+.|+++.+.||.|..+.+.. ..|-..|..|++..++.
T Consensus 147 ~~-------------------~-----~~~~a~~l~~~GI~i~tVGiG~-~~d~~~~~~L~~ias~~ 188 (193)
T cd01477 147 SN-------------------D-----PRPIAARLKSTGIAIITVAFTQ-DESSNLLDKLGKIASPG 188 (193)
T ss_pred CC-------------------C-----HHHHHHHHHHCCCEEEEEEeCC-CCCHHHHHHHHHhcCCC
Confidence 00 0 2467888999999998888875 34433344454444433
No 39
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.78 E-value=0.00081 Score=80.59 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=116.7
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcC-CCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM-PGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~l-p~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p 390 (901)
...-.++||||+|.+. ..+-+..++.++...|... .... +||||+|++...-+ + +|
T Consensus 405 ~~~~~v~fvvD~SGSM-~~~rl~~aK~av~~Ll~~~~~~~D--~v~Li~F~~~~a~~------------~--------lp 461 (589)
T TIGR02031 405 KSGRLLIFVVDASGSA-AVARMSEAKGAVELLLGEAYVHRD--QVSLIAFRGTAAEV------------L--------LP 461 (589)
T ss_pred ccCceEEEEEECCCCC-ChHHHHHHHHHHHHHHHhhccCCC--EEEEEEECCCCceE------------E--------CC
Confidence 4467789999999854 3345888899888888643 3333 79999997543110 1 11
Q ss_pred CCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCC--EEEEEecCCCCCCCCcccCCCC
Q psy12437 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGG--RITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GG--rI~~F~~g~pt~GpG~l~~~~~ 465 (901)
... ..+.+...|+.|+ ....+.++.||..|..+++. .++ .|+++++|.+|.|.+.....+.
T Consensus 462 ~t~--------~~~~~~~~L~~l~------~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~ 527 (589)
T TIGR02031 462 PSR--------SVEQAKRRLDVLP------GGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIK 527 (589)
T ss_pred CCC--------CHHHHHHHHhcCC------CCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCccccccc
Confidence 111 2223344566664 24568899999999998863 243 6999999999987542110000
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCC
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYS 531 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~ 531 (901)
+. ..+..+-...++..+.+.||.+-++-+...+.+..-+..|++..||..|+.++-+
T Consensus 528 ~~---------~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 528 AD---------REQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred cc---------chhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHHhcCCcEEeCCCCC
Confidence 00 1223444567889999999887777777777777778999999999999998765
No 40
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.76 E-value=0.00079 Score=67.10 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=93.4
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCc
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 395 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~ 395 (901)
.+|+||.|...-.. -++.+++.++..+..+.- ..+.+||||+|++..++.- ++.+ +
T Consensus 3 v~~vlD~S~Sm~~~-~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~--------------~l~~--------~ 59 (164)
T cd01482 3 IVFLVDGSWSIGRS-NFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEF--------------DLNA--------Y 59 (164)
T ss_pred EEEEEeCCCCcChh-hHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEE--------------ecCC--------C
Confidence 68999998765433 367788888888876632 2346999999999754320 0110 0
Q ss_pred ccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH-hhcC-CC------CEEEEEecCCCCCCCCcccCCCCCC
Q psy12437 396 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP-TG------GRITIFQTCLPNRGPGALQSRENPN 467 (901)
Q Consensus 396 lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~-~G------GrI~~F~~g~pt~GpG~l~~~~~~~ 467 (901)
...+.+.+.|+.+.. ....+.+|.||..|.. ++.. .| ..|++|++|.++.
T Consensus 60 -----~~~~~l~~~l~~~~~-----~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~------------ 117 (164)
T cd01482 60 -----TSKEDVLAAIKNLPY-----KGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD------------ 117 (164)
T ss_pred -----CCHHHHHHHHHhCcC-----CCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc------------
Confidence 122345555666642 2345789999998776 4443 12 2488888886431
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCc-eEEEeC
Q psy12437 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG-CIHHIP 528 (901)
Q Consensus 468 ~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG-~v~~y~ 528 (901)
-.++.|.++.+.||.+ |+++.+..+..+|..++..+.+ .++...
T Consensus 118 ---------------~~~~~a~~lk~~gi~i--~~ig~g~~~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01482 118 ---------------DVELPARVLRNLGVNV--FAVGVKDADESELKMIASKPSETHVFNVA 162 (164)
T ss_pred ---------------hHHHHHHHHHHCCCEE--EEEecCcCCHHHHHHHhCCCchheEEEcC
Confidence 0245677887888754 4444455668888999888654 344443
No 41
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=97.74 E-value=6.6e-05 Score=64.38 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=30.9
Q ss_pred cCccccccccccccCeEEEEeCCceEEEEecCCC
Q psy12437 777 IPRILQLSAERLQATGTYLLNMPDLIIILVRHGT 810 (901)
Q Consensus 777 ~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v 810 (901)
.|..++++.+.|.++++||||+|..||+|+|+..
T Consensus 4 ~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~ 37 (76)
T PF00626_consen 4 RPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKS 37 (76)
T ss_dssp EEEEESSSGGGEETTSEEEEEESSEEEEEEHTTS
T ss_pred cCCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccC
Confidence 4556789999999999999999999999999993
No 42
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.70 E-value=0.0019 Score=66.12 Aligned_cols=150 Identities=9% Similarity=0.094 Sum_probs=92.6
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCCCC
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 394 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p~~~~ 394 (901)
.+|+||.|.+.-...+-..+++.++..++.+.-. .++|||+|+|++..+++ .+...
T Consensus 3 i~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~---------------------- 60 (192)
T cd01473 3 LTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDE---------------------- 60 (192)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcc----------------------
Confidence 5899999986544444335677777777776532 35799999999876542 12110
Q ss_pred cccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC-CC-----E-EEEEecCCCCCCCCcccCCCCCC
Q psy12437 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-GG-----R-ITIFQTCLPNRGPGALQSRENPN 467 (901)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-GG-----r-I~~F~~g~pt~GpG~l~~~~~~~ 467 (901)
....++.+...++.|...+. ....+.+|.||..|...+... |+ | ++++|+|..+.+-
T Consensus 61 ----~~~~~~~l~~~i~~l~~~~~--~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~---------- 124 (192)
T cd01473 61 ----ERYDKNELLKKINDLKNSYR--SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSAS---------- 124 (192)
T ss_pred ----cccCHHHHHHHHHHHHhccC--CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcc----------
Confidence 00113345555666643211 235778999999998877542 22 2 7777777633210
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhcccc
Q psy12437 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF 519 (901)
Q Consensus 468 ~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~ 519 (901)
..--.+.|..+.+.||.|-.+.... .+-.+|..++..
T Consensus 125 -------------~~~~~~~a~~lk~~gV~i~~vGiG~--~~~~el~~ia~~ 161 (192)
T cd01473 125 -------------KKELQDISLLYKEENVKLLVVGVGA--ASENKLKLLAGC 161 (192)
T ss_pred -------------hhhHHHHHHHHHHCCCEEEEEEecc--ccHHHHHHhcCC
Confidence 0012466778888999887777764 456777777754
No 43
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.69 E-value=0.0011 Score=66.06 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=95.6
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCCCC
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 394 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p~~~~ 394 (901)
.+|+||.|...- ..-++.+++.++..++.+.-. ..++||+|+|++..+.. +|. +.
T Consensus 3 ivfllD~S~Si~-~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~---------------~~------- 59 (165)
T cd01481 3 IVFLIDGSDNVG-SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLN---------------TH------- 59 (165)
T ss_pred EEEEEeCCCCcC-HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEecc---------------cc-------
Confidence 589999987533 345788888898888887632 35799999998865431 111 10
Q ss_pred cccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH-hhcC-CCC-------E-EEEEecCCCCCCCCcccCCC
Q psy12437 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP-TGG-------R-ITIFQTCLPNRGPGALQSRE 464 (901)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~-~GG-------r-I~~F~~g~pt~GpG~l~~~~ 464 (901)
..++.|.+.++.|+.. ....+.+|.||..+.. ++.. .|+ | ++++++|..+
T Consensus 60 ------~~~~~l~~~i~~i~~~----~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~---------- 119 (165)
T cd01481 60 ------STKADVLGAVRRLRLR----GGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQ---------- 119 (165)
T ss_pred ------CCHHHHHHHHHhcccC----CCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCc----------
Confidence 0223355556666421 1223569999998876 4443 333 2 5677776521
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCC
Q psy12437 465 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 530 (901)
Q Consensus 465 ~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f 530 (901)
+-..+-|..+.+.|| .+|+.+....|..+|..++..- -.++..++|
T Consensus 120 -----------------d~~~~~a~~lr~~gv--~i~~vG~~~~~~~eL~~ias~p-~~vf~v~~f 165 (165)
T cd01481 120 -----------------DDVERPAVALKRAGI--VPFAIGARNADLAELQQIAFDP-SFVFQVSDF 165 (165)
T ss_pred -----------------chHHHHHHHHHHCCc--EEEEEeCCcCCHHHHHHHhCCC-ccEEEecCC
Confidence 013466778888885 5677766668888998888665 356665554
No 44
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=97.68 E-value=0.0012 Score=64.29 Aligned_cols=148 Identities=21% Similarity=0.276 Sum_probs=99.0
Q ss_pred EEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCC
Q psy12437 316 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 394 (901)
Q Consensus 316 ~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~ 394 (901)
.++|+||+|... ....++.+++.+...+..+... ...+||++.|+...+.+- ++.+.
T Consensus 2 ~v~~viD~S~Sm-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~--------------~~~~~------- 59 (161)
T cd00198 2 DIVFLLDVSGSM-GGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVL--------------PLTTD------- 59 (161)
T ss_pred cEEEEEeCCCCc-CcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceee--------------ccccc-------
Confidence 378999999865 4457888999999999888762 235999999997433210 00000
Q ss_pred cccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCcccCCCCCCCC
Q psy12437 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQSRENPNQR 469 (901)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~GpG~l~~~~~~~~~ 469 (901)
...+.+...++.+.. .......+..|+..|...+.. ....|++|++|.++.+. .
T Consensus 60 ------~~~~~~~~~~~~~~~----~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~-----~------ 118 (161)
T cd00198 60 ------TDKADLLEAIDALKK----GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGP-----E------ 118 (161)
T ss_pred ------CCHHHHHHHHHhccc----CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCc-----c------
Confidence 022344555665532 345667789999999998865 35678888888755443 0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccC
Q psy12437 470 SNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS 520 (901)
Q Consensus 470 ~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~T 520 (901)
-..+...++.+.+|.|.++.+.. ..+-..+..++..|
T Consensus 119 -------------~~~~~~~~~~~~~v~v~~v~~g~-~~~~~~l~~l~~~~ 155 (161)
T cd00198 119 -------------LLAEAARELRKLGITVYTIGIGD-DANEDELKEIADKT 155 (161)
T ss_pred -------------hhHHHHHHHHHcCCEEEEEEcCC-CCCHHHHHHHhccc
Confidence 01345666777799998888876 35566778888877
No 45
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=97.59 E-value=0.0024 Score=63.73 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=106.0
Q ss_pred cEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCC
Q psy12437 315 AMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 393 (901)
Q Consensus 315 p~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~ 393 (901)
.-++||||+|.... ...+..+++.+...+..+... ...+||+|+|++..+.+. |..
T Consensus 2 ~~v~l~vD~S~SM~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~---------------------~~~- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG-PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLF---------------------PLN- 58 (177)
T ss_pred ccEEEEEeCCCccc-hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEE---------------------ccc-
Confidence 35789999987653 345788888888888877652 345999999998543321 000
Q ss_pred CcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---C-----CCEEEEEecCCCCCCCCcccCCCC
Q psy12437 394 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---T-----GGRITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 394 ~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~-----GGrI~~F~~g~pt~GpG~l~~~~~ 465 (901)
.....+.+...++.+... .....-++.||..|...+.. . .-.|++|++|.++.+
T Consensus 59 -----~~~~~~~~~~~i~~~~~~----~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~--------- 120 (177)
T smart00327 59 -----DSRSKDALLEALASLSYK----LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG--------- 120 (177)
T ss_pred -----ccCCHHHHHHHHHhcCCC----CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC---------
Confidence 011234456666666421 34557799999999998752 1 236888888876644
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEE
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHH 526 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~ 526 (901)
+.+.+...++.+.+|.+..+.+..+. +-..|..++..++|...+
T Consensus 121 ----------------~~~~~~~~~~~~~~i~i~~i~~~~~~-~~~~l~~~~~~~~~~~~~ 164 (177)
T smart00327 121 ----------------GDLLKAAKELKRSGVKVFVVGVGNDV-DEEELKKLASAPGGVYVF 164 (177)
T ss_pred ----------------ccHHHHHHHHHHCCCEEEEEEccCcc-CHHHHHHHhCCCcceEEe
Confidence 13467777888888888888887543 788899999999987765
No 46
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.58 E-value=0.0012 Score=79.89 Aligned_cols=161 Identities=19% Similarity=0.280 Sum_probs=107.7
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhc-CCCCCCceEEEEEEccE-EEEEEcCCCCCCCceeeccCccccCC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~-lp~~~~~~VglItfd~~-V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
.....++||||+|.+....+-+..++.++...+.. ..... +||||+|+.. ..+ .+
T Consensus 463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D--~v~lI~F~g~~a~~---------------------~~ 519 (633)
T TIGR02442 463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRD--KVALITFRGEEAEV---------------------LL 519 (633)
T ss_pred CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCC--EEEEEEECCCCceE---------------------Ec
Confidence 34567889999998754434677788877777643 33333 8999999743 211 11
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-------CCCEEEEEecCCCCCCCCcccC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-------TGGRITIFQTCLPNRGPGALQS 462 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-------~GGrI~~F~~g~pt~GpG~l~~ 462 (901)
|. ......+...|+.|+ ....+.++.||..|..++.. ..+.|+++++|.+|.|.+.
T Consensus 520 p~--------t~~~~~~~~~L~~l~------~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~--- 582 (633)
T TIGR02442 520 PP--------TSSVELAARRLEELP------TGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGG--- 582 (633)
T ss_pred CC--------CCCHHHHHHHHHhCC------CCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCC---
Confidence 11 112334445666664 24568899999999998872 2367999999999986211
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEe
Q psy12437 463 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHI 527 (901)
Q Consensus 463 ~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y 527 (901)
. + +..+ -..+|.++.+.||.+.++-+...+++..-+..||+.+||..|..
T Consensus 583 ~-~-------------~~~~-~~~~a~~l~~~~i~~~vIdt~~~~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 583 E-P-------------PTDD-ARTIAAKLAARGILFVVIDTESGFVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred C-C-------------hHHH-HHHHHHHHHhcCCeEEEEeCCCCCcchhHHHHHHHhhCCeEEec
Confidence 0 0 1111 25667777778887777766666777888999999999998864
No 47
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.51 E-value=0.0032 Score=74.94 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=110.3
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhc-CCCCCCceEEEEEEccE-EEEEEcCCCCCCCceeeccCccccCC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~-lp~~~~~~VglItfd~~-V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
..+-.++||||+|.+.. ..-+..+|.++...|.. +.... +||+|+|++. ..+ + +
T Consensus 399 ~~~~~vvfvvD~SGSM~-~~rl~~aK~a~~~ll~~ay~~rD--~v~lI~F~g~~a~~-------------~--------l 454 (584)
T PRK13406 399 RSETTTIFVVDASGSAA-LHRLAEAKGAVELLLAEAYVRRD--QVALVAFRGRGAEL-------------L--------L 454 (584)
T ss_pred cCCccEEEEEECCCCCc-HhHHHHHHHHHHHHHHhhcCCCC--EEEEEEECCCceeE-------------E--------c
Confidence 45688999999998753 34688899988888854 33333 8999999654 321 1 1
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CC--CEEEEEecCCCCCCCCcccCCC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TG--GRITIFQTCLPNRGPGALQSRE 464 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~G--GrI~~F~~g~pt~GpG~l~~~~ 464 (901)
|... +...+...|+.|+ ...++.++.||..|..+++. .| -.|+++++|.+|.|.+.-..++
T Consensus 455 ppT~--------~~~~~~~~L~~l~------~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~ 520 (584)
T PRK13406 455 PPTR--------SLVRAKRSLAGLP------GGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRA 520 (584)
T ss_pred CCCc--------CHHHHHHHHhcCC------CCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCcccccccc
Confidence 1111 2223344556563 34778899999999998753 22 5899999999998764322221
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCC
Q psy12437 465 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG 532 (901)
Q Consensus 465 ~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~ 532 (901)
.. ..+ =..+|..+.+.||.+-++-+.... ...+..||+.+||..|..+.-+.
T Consensus 521 ~~-------------~~~-~~~~a~~~~~~gi~~~vId~g~~~--~~~~~~LA~~~gg~y~~l~~~~a 572 (584)
T PRK13406 521 QA-------------EED-ALAAARALRAAGLPALVIDTSPRP--QPQARALAEAMGARYLPLPRADA 572 (584)
T ss_pred ch-------------hhH-HHHHHHHHHhcCCeEEEEecCCCC--cHHHHHHHHhcCCeEEECCCCCH
Confidence 10 001 145677788888776666655443 34589999999999999988663
No 48
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.51 E-value=0.0011 Score=66.35 Aligned_cols=155 Identities=17% Similarity=0.271 Sum_probs=95.1
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcC-CCCCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCCCC
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM-PGDRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 394 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~l-p~~~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p~~~~ 394 (901)
.+|+||.|...-.. -++.+++.+...++.+ ..+...+||+|+|++.++++ .+.. .
T Consensus 2 ivflvD~S~sm~~~-~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~------------~---------- 58 (178)
T PF00092_consen 2 IVFLVDTSGSMSGD-NFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTD------------Y---------- 58 (178)
T ss_dssp EEEEEE-STTSCHH-HHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTS------------H----------
T ss_pred EEEEEeCCCCCchH-HHHHHHHHHHHHHHhhhccccccccceeeeeccccccccccc------------c----------
Confidence 58999999864432 3677888999888876 33456799999999987632 1211 0
Q ss_pred cccchhhhHHHHHHHH-HhCCccccCCCCCCCcHHHHHHHHHHhhcCC--C------CEEEEEecCCCCCCCCcccCCCC
Q psy12437 395 ILVNLSECYDMIVDLL-KQLPGKFKDSLDSGSALGPALQAAFKLLQPT--G------GRITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 395 ~lv~l~e~~~~i~~lL-~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~--G------GrI~~F~~g~pt~GpG~l~~~~~ 465 (901)
...+.+...+ ..+. .....+.+|.||..|...+... | .-|++|++|.++.++-
T Consensus 59 ------~~~~~~~~~i~~~~~-----~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~------- 120 (178)
T PF00092_consen 59 ------QSKNDLLNAINDSIP-----SSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDS------- 120 (178)
T ss_dssp ------SSHHHHHHHHHTTGG-----CCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSG-------
T ss_pred ------ccccccccccccccc-----ccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcc-------
Confidence 0112222222 2221 2446677999999999988643 2 2577888887654320
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhcccc--CCceEEEeCCCC
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF--SSGCIHHIPLYS 531 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~--TGG~v~~y~~f~ 531 (901)
....+..+.+. ..|.+|+++.+..+..+|..|+.. .+|.+++..+|.
T Consensus 121 ------------------~~~~~~~~~~~-~~i~~~~ig~~~~~~~~l~~la~~~~~~~~~~~~~~~~ 169 (178)
T PF00092_consen 121 ------------------PSEEAANLKKS-NGIKVIAIGIDNADNEELRELASCPTSEGHVFYLADFS 169 (178)
T ss_dssp ------------------HHHHHHHHHHH-CTEEEEEEEESCCHHHHHHHHSHSSTCHHHEEEESSHH
T ss_pred ------------------hHHHHHHHHHh-cCcEEEEEecCcCCHHHHHHHhCCCCCCCcEEEcCCHH
Confidence 01111122221 456677766677888999999965 447788877765
No 49
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.46 E-value=0.0062 Score=60.39 Aligned_cols=104 Identities=18% Similarity=0.271 Sum_probs=67.4
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEcc--EEEEE-EcCCCCCCCceeeccCccccCCCCC
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDS--AVHFY-SLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~--~V~~y-~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
++|+||+|.+... .++..++.++..+..+... ...+||+|+|++ ..++. .+..
T Consensus 3 v~~llD~S~Sm~~--~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~--------------------- 59 (163)
T cd01476 3 LLFVLDSSGSVRG--KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPK--------------------- 59 (163)
T ss_pred EEEEEeCCcchhh--hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCC---------------------
Confidence 6899999876432 3667788888888777542 246999999988 33331 1110
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC----C-C--CEEEEEecCCCCC
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP----T-G--GRITIFQTCLPNR 455 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~----~-G--GrI~~F~~g~pt~ 455 (901)
...++.+...++.|.. ....+.+|.||..|..++.. . + ..|+++++|.++.
T Consensus 60 -------~~~~~~l~~~i~~l~~-----~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~ 117 (163)
T cd01476 60 -------HNDGEELLEKVDNLRF-----IGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD 117 (163)
T ss_pred -------CCCHHHHHHHHHhCcc-----CCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC
Confidence 0123345556666642 23467899999999999952 1 1 3588888886553
No 50
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=97.39 E-value=0.0032 Score=65.46 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=113.2
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
...-+|||||.|.+.....-+++++-++...|..-= .-|-+|++|+|... +.
T Consensus 77 ~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAY-q~RdkvavI~F~G~-----------~A---------------- 128 (261)
T COG1240 77 AGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAY-QRRDKVAVIAFRGE-----------KA---------------- 128 (261)
T ss_pred cCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHH-HccceEEEEEecCC-----------cc----------------
Confidence 456799999999875554457778877777774311 12449999998532 01
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC-------CCEEEEEecCCCCCCCCcccCCCC
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-------GGRITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-------GGrI~~F~~g~pt~GpG~l~~~~~ 465 (901)
.++++...+-+.+...|+.|+. ...+=+..||..|..++... --.+++.++|.||.+.+.=...
T Consensus 129 -~lll~pT~sv~~~~~~L~~l~~------GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~-- 199 (261)
T COG1240 129 -ELLLPPTSSVELAERALERLPT------GGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKA-- 199 (261)
T ss_pred -eEEeCCcccHHHHHHHHHhCCC------CCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHH--
Confidence 1223333344566677777753 23455999999999999642 1478999999998765331110
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCC
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG 532 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~ 532 (901)
=-.+.|.++...|+-+=+.-+...++.+.-...||...||.++..+..+.
T Consensus 200 -----------------e~~~~a~~~~~~g~~~lvid~e~~~~~~g~~~~iA~~~Gg~~~~L~~l~~ 249 (261)
T COG1240 200 -----------------ETLEAASKLRLRGIQLLVIDTEGSEVRLGLAEEIARASGGEYYHLDDLSD 249 (261)
T ss_pred -----------------HHHHHHHHHhhcCCcEEEEecCCccccccHHHHHHHHhCCeEEecccccc
Confidence 01355666677787666777777778787789999999999999988764
No 51
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.28 E-value=0.0015 Score=65.99 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=85.0
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC----CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD----RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~----~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
.+||||+|.+.. ...++.+++++...++.+..+ .+.+||+|+|++..++.- .+ .++++.
T Consensus 6 v~~llD~SgSM~-~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~---~l--------~~~~~~----- 68 (176)
T cd01464 6 IYLLLDTSGSMA-GEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIV---PL--------TPLESF----- 68 (176)
T ss_pred EEEEEECCCCCC-ChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEec---CC--------ccHHhc-----
Confidence 579999998643 334777888888888777543 356999999999765420 00 000000
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC---------C---CEEEEEecCCCCCCCCcc
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---------G---GRITIFQTCLPNRGPGAL 460 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---------G---GrI~~F~~g~pt~GpG~l 460 (901)
.++.| .....+++|.||..|...+... + ..|+++|+|.|+.++.
T Consensus 69 ----------------~~~~l------~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~-- 124 (176)
T cd01464 69 ----------------QPPRL------TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLT-- 124 (176)
T ss_pred ----------------CCCcc------cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHH--
Confidence 00111 1235789999999999988531 1 1699999998653221
Q ss_pred cCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccc
Q psy12437 461 QSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSK 518 (901)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~ 518 (901)
... +....+.+.++.|..|.++. .+|...|..++.
T Consensus 125 ------------------~~~----~~~~~~~~~~~~i~~igiG~-~~~~~~L~~ia~ 159 (176)
T cd01464 125 ------------------AAI----ERIKEARDSKGRIVACAVGP-KADLDTLKQITE 159 (176)
T ss_pred ------------------HHH----HHHHhhcccCCcEEEEEecc-ccCHHHHHHHHC
Confidence 011 22223334467777777765 577777777764
No 52
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=97.24 E-value=0.0051 Score=62.29 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=103.9
Q ss_pred EEEcchhHHhhc----hHHHHHHHHHHHHhc-CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCC
Q psy12437 320 LLDVSQIAAQSG----YLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 394 (901)
Q Consensus 320 vID~s~~a~~~g----~l~~~~~si~~~L~~-lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~ 394 (901)
|||.|....+.. .+.++++.+..-+.. +..|+-..+|||+..+.+- ..++++.
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a-------------~~ls~ls--------- 58 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRA-------------ERLSELS--------- 58 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeeccee-------------EEeeecC---------
Confidence 589987655432 466677666666643 3446656899998644321 1122211
Q ss_pred cccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCC-EEEEEecCCCCCCCCcccCCCCCCCCC
Q psy12437 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGG-RITIFQTCLPNRGPGALQSRENPNQRS 470 (901)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GG-rI~~F~~g~pt~GpG~l~~~~~~~~~~ 470 (901)
..-......|.++.. ........+-.||..|...|+. .|. +|+++.++.-|..||.+
T Consensus 59 ------gn~~~h~~~L~~~~~---~~~~G~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di---------- 119 (193)
T PF04056_consen 59 ------GNPQEHIEALKKLRK---LEPSGEPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDI---------- 119 (193)
T ss_pred ------CCHHHHHHHHHHhcc---CCCCCChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhH----------
Confidence 111122233444432 2445667899999999999985 343 56666777766666533
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhh
Q psy12437 471 NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYL 549 (901)
Q Consensus 471 ~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l 549 (901)
.+..+.+.+.+|-|+++.++.+ +.-.+.+|+.|||..... .+.+.|..-|....
T Consensus 120 --------------~~ti~~l~~~~IrvsvI~laaE---v~I~k~i~~~T~G~y~V~--------lde~H~~~lL~~~~ 173 (193)
T PF04056_consen 120 --------------HETIESLKKENIRVSVISLAAE---VYICKKICKETGGTYGVI--------LDEDHFKELLMEHV 173 (193)
T ss_pred --------------HHHHHHHHHcCCEEEEEEEhHH---HHHHHHHHHhhCCEEEEe--------cCHHHHHHHHHhhC
Confidence 3777889999999999999864 777899999999954433 23356666665544
No 53
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.08 E-value=0.021 Score=59.77 Aligned_cols=151 Identities=20% Similarity=0.216 Sum_probs=90.8
Q ss_pred EEEEEEEcchhHHh------hchHHHHHHHHHHHHhc----CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCcc
Q psy12437 316 MYLFLLDVSQIAAQ------SGYLYTVCEVLLNQLKS----MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDID 385 (901)
Q Consensus 316 ~~vFvID~s~~a~~------~g~l~~~~~si~~~L~~----lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~ 385 (901)
..+|+||+|....+ ...|+.+++.+...+.. .+.+ +||+|.|++.-.--. .+ -....++.++.
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D---~vGlilf~t~~~~~~--~~--~~~i~v~~~l~ 75 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKD---LVGVVFYGTEESKNP--VG--YENIYVLLDLD 75 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCC---eEEEEEEcccCCCCc--CC--CCceEEeecCC
Confidence 47999999986531 23678888888888874 4444 899999987632100 00 11222333221
Q ss_pred ccCCCCCCCcccchhhhHHHHHHHHHhCCcc-c----cCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCC
Q psy12437 386 DIFLPSPENILVNLSECYDMIVDLLKQLPGK-F----KDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNR 455 (901)
Q Consensus 386 d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~-~----~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~ 455 (901)
.+ ..+.|..+++.+... . .........++.||.+|..++.. ..-||++||+|--..
T Consensus 76 ~~--------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~ 141 (218)
T cd01458 76 TP--------------GAERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH 141 (218)
T ss_pred CC--------------CHHHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC
Confidence 11 112333444433211 0 11234678899999999999975 235799999976444
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCC
Q psy12437 456 GPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ 506 (901)
Q Consensus 456 GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~ 506 (901)
|... -...-+.+++.++.+.||.|.+|.+..+
T Consensus 142 ~~~~-------------------~~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 142 GGDS-------------------IKDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred CCCH-------------------HHHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 3100 0123356788899999999999987544
No 54
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=96.95 E-value=0.005 Score=54.64 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.8
Q ss_pred ccccccccccCeEEEEeCCceEEEEecCCCChHH
Q psy12437 781 LQLSAERLQATGTYLLNMPDLIIILVRHGTSPAI 814 (901)
Q Consensus 781 l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~ 814 (901)
++++.++|.++.+||||+|..||+|+|+.+++.-
T Consensus 16 ~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~e 49 (90)
T smart00262 16 VPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDE 49 (90)
T ss_pred cCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHH
Confidence 4578899999999999999999999999988765
No 55
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=96.91 E-value=0.022 Score=57.25 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=86.3
Q ss_pred EEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCC
Q psy12437 316 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 394 (901)
Q Consensus 316 ~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~ 394 (901)
.++|+||+|.+......++.+++++...++.+.. +. ++|+++|++.. ........+...+.++ .
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d--~~~l~~F~~~~------~~~~~~~~~~~~~~~~-------~ 66 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGV--PHAILGFTTDA------GGRERVRWIKIKDFDE-------S 66 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCC--cEEEEEecCCC------CCccceEEEEecCccc-------c
Confidence 5789999998654324678888887776666654 33 89999998763 0000001111111111 1
Q ss_pred cccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy12437 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRSN 471 (901)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~ 471 (901)
+ ...+...|..+. ....+.+|.||..|...+.. ....|+++++|.|+.+...-.
T Consensus 67 ~-------~~~~~~~l~~~~------~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~---------- 123 (174)
T cd01454 67 L-------HERARKRLAALS------PGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEG---------- 123 (174)
T ss_pred c-------chhHHHHHHccC------CCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCc----------
Confidence 0 012233344442 12368899999999998864 346788999999887642110
Q ss_pred CCCCCCCchHHHHHHH---HHHHhhCCcEEEEEEecCCc
Q psy12437 472 DDPPHMNPATDFYKKI---ALECTSFYIAVDLFILNSQY 507 (901)
Q Consensus 472 ~~~~~~~~a~~fY~~l---a~~~~~~~isvdlf~~s~~~ 507 (901)
.....++. +.++.+.||.+..+.+..+.
T Consensus 124 --------~~~~~~~~~~~~~~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 124 --------NVFATEDALRAVIEARKLGIEVFGITIDRDA 154 (174)
T ss_pred --------chhHHHHHHHHHHHHHhCCcEEEEEEecCcc
Confidence 00012233 77788889998877776553
No 56
>KOG2884|consensus
Probab=96.83 E-value=0.028 Score=56.36 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=91.3
Q ss_pred EEEEEEEcchhHHhhch----HHHHHHHHHHHH-hcCCCCCCceEEEEEEcc-EEEEEEcCCCCCCCceeeccCccccCC
Q psy12437 316 MYLFLLDVSQIAAQSGY----LYTVCEVLLNQL-KSMPGDRRTSIAIITYDS-AVHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 316 ~~vFvID~s~~a~~~g~----l~~~~~si~~~L-~~lp~~~~~~VglItfd~-~V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
.-+.|||-|.......| |++=++++-... ..+..++...|||||... .+.+.. .
T Consensus 5 atmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLs--T------------------ 64 (259)
T KOG2884|consen 5 ATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLS--T------------------ 64 (259)
T ss_pred eEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeee--e------------------
Confidence 46789999876654333 444455544433 234444445799999754 443321 0
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC---C--CEEEEEecCCCCCCCCcccCCC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---G--GRITIFQTCLPNRGPGALQSRE 464 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---G--GrI~~F~~g~pt~GpG~l~~~~ 464 (901)
| ..-+-.|...+..|+ ...+.-++.+|++|..+|+.+ + -||++|.++|-..
T Consensus 65 ~---------T~d~gkils~lh~i~------~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e--------- 120 (259)
T KOG2884|consen 65 L---------TSDRGKILSKLHGIQ------PHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEE--------- 120 (259)
T ss_pred c---------cccchHHHHHhcCCC------cCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchh---------
Confidence 0 001123444444443 235566999999999999863 3 6999999987221
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCc
Q psy12437 465 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG 522 (901)
Q Consensus 465 ~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG 522 (901)
..+-.-++|+++.+++|.|||+.|.-...+-.-+......++|
T Consensus 121 ---------------~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~ 163 (259)
T KOG2884|consen 121 ---------------SEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNG 163 (259)
T ss_pred ---------------hHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcC
Confidence 2234568999999999999999988665553334444444444
No 57
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=96.51 E-value=0.012 Score=58.03 Aligned_cols=101 Identities=20% Similarity=0.305 Sum_probs=67.3
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCC----CceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDR----RTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~----~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
-|+ +|++|+|...+. .-++++...|.+.++.|..|+ +..++|||||+.+++|-- ..|++..+.
T Consensus 4 lP~-~lllDtSgSM~G-e~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~p-----------f~~~~nF~~ 70 (207)
T COG4245 4 LPC-YLLLDTSGSMIG-EPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP-----------FTDAANFNP 70 (207)
T ss_pred CCE-EEEEecCccccc-ccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEec-----------hhhHhhcCC
Confidence 354 467899986553 347888889999998887763 679999999987776521 122222211
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC------C------CEEEEEecCCCC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT------G------GRITIFQTCLPN 454 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~------G------GrI~~F~~g~pt 454 (901)
|. | ....++.+|+||..|..+++.. . -=|++.++|-||
T Consensus 71 p~---------------------L------~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~Pt 120 (207)
T COG4245 71 PI---------------------L------TAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPT 120 (207)
T ss_pred Cc---------------------e------ecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcc
Confidence 10 1 1236788999999999999741 1 256777777763
No 58
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=96.17 E-value=0.13 Score=50.35 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=75.3
Q ss_pred EEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCc
Q psy12437 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 395 (901)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~ 395 (901)
++|+||+|.+... .-+...+..+...+..+.. +. +|++|+|++....+.+. ...
T Consensus 3 v~illD~SgSM~~-~k~~~a~~~~~~l~~~~~~~~~--~v~li~F~~~~~~~~~~--------------------~~~-- 57 (152)
T cd01462 3 VILLVDQSGSMYG-APEEVAKAVALALLRIALAENR--DTYLILFDSEFQTKIVD--------------------KTD-- 57 (152)
T ss_pred EEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHcCC--cEEEEEeCCCceEEecC--------------------Ccc--
Confidence 6899999986432 2244455555555554432 33 79999998873221110 000
Q ss_pred ccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCCCC
Q psy12437 396 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRSND 472 (901)
Q Consensus 396 lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~~ 472 (901)
.+..+++.|... .....+.++.||..+...+.. ..+.|++|++|..+..
T Consensus 58 ---------~~~~~~~~l~~~---~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~---------------- 109 (152)
T cd01462 58 ---------DLEEPVEFLSGV---QLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV---------------- 109 (152)
T ss_pred ---------cHHHHHHHHhcC---CCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC----------------
Confidence 112223333221 124668999999999999875 2468999998852110
Q ss_pred CCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCC
Q psy12437 473 DPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ 506 (901)
Q Consensus 473 ~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~ 506 (901)
..+.. +.+....+.++.|..|.++.+
T Consensus 110 -------~~~~~-~~~~~~~~~~~~v~~~~~g~~ 135 (152)
T cd01462 110 -------SDELL-REVELKRSRVARFVALALGDH 135 (152)
T ss_pred -------CHHHH-HHHHHHHhcCcEEEEEEecCC
Confidence 11222 344455566789999988764
No 59
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.44 Score=46.86 Aligned_cols=133 Identities=18% Similarity=0.264 Sum_probs=86.4
Q ss_pred CcEEEEEEEcchhHHhhch----HHHHHHHHHHHHh-cCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccC
Q psy12437 314 PAMYLFLLDVSQIAAQSGY----LYTVCEVLLNQLK-SMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF 388 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~----l~~~~~si~~~L~-~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f 388 (901)
+-+-|.+||-|..+....| +++-++++...+. ...+++...||||+-... +|+.++
T Consensus 3 lEatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a-----------~p~vls-------- 63 (243)
T COG5148 3 LEATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQA-----------QPNVLS-------- 63 (243)
T ss_pred cceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccC-----------Ccchhc--------
Confidence 3457889999987765433 5666677666663 344555558999884321 233211
Q ss_pred CCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CC--CEEEEEecCCCCCCCCcccCC
Q psy12437 389 LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TG--GRITIFQTCLPNRGPGALQSR 463 (901)
Q Consensus 389 ~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~G--GrI~~F~~g~pt~GpG~l~~~ 463 (901)
....-+-.|...|..++- +.+--++-+|+.|..+|+. .| -||++|+++|...
T Consensus 64 ---------T~T~~~gkilt~lhd~~~------~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~e-------- 120 (243)
T COG5148 64 ---------TPTKQRGKILTFLHDIRL------HGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQE-------- 120 (243)
T ss_pred ---------cchhhhhHHHHHhccccc------cCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccc--------
Confidence 112223455566666642 3445588999999999986 34 6999999987221
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEec
Q psy12437 464 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILN 504 (901)
Q Consensus 464 ~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s 504 (901)
+.+-.-.+|+.+.+++|+||++.++
T Consensus 121 ----------------sedeLirlak~lkknnVAidii~fG 145 (243)
T COG5148 121 ----------------SEDELIRLAKQLKKNNVAIDIIFFG 145 (243)
T ss_pred ----------------cHHHHHHHHHHHHhcCeeEEEEehh
Confidence 1123457999999999999999865
No 60
>KOG0443|consensus
Probab=95.19 E-value=0.042 Score=65.17 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=40.4
Q ss_pred hhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHHH
Q psy12437 751 SIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAIC 815 (901)
Q Consensus 751 ~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~ 815 (901)
-..|+||..+.- .+....+ .....+-+.|..|.||||||+..||||||..++++-.
T Consensus 617 ~~~PrLF~Cs~~--~g~f~~~-------EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK 672 (827)
T KOG0443|consen 617 ERDPRLFSCSNK--TGSFVVE-------EIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEK 672 (827)
T ss_pred CCCCcEEEEEec--CCcEEEE-------EecCcchhhccccceEEEecCceEEEEecCCCChhHH
Confidence 457888888742 1111111 1124578899999999999999999999999988764
No 61
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=94.93 E-value=0.57 Score=56.36 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=84.7
Q ss_pred cEEEEEEEcchhHHh-------hchHHHHHHHHHHHHh-cCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccc
Q psy12437 315 AMYLFLLDVSQIAAQ-------SGYLYTVCEVLLNQLK-SMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDD 386 (901)
Q Consensus 315 p~~vFvID~s~~a~~-------~g~l~~~~~si~~~L~-~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d 386 (901)
=+.|||||+|....+ ..-+..+.++|...+. .+-.+++..||++.|++.=+ ++.+.-...+|+.||+.
T Consensus 11 eailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t----~n~~~~~~i~v~~~L~~ 86 (584)
T TIGR00578 11 DSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKD----KNSVNFKNIYVLQELDN 86 (584)
T ss_pred eEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCC----CCccCCCceEEEeeCCC
Confidence 468999999977543 1124445555555553 33334455899999987532 12221234456656553
Q ss_pred cCCCCCCCcccchhhhHHHHHHHHHh-CCcccc--CCCCCCCcHHHHHHHHHHhhcC----CC-CEEEEEecCCCCCCCC
Q psy12437 387 IFLPSPENILVNLSECYDMIVDLLKQ-LPGKFK--DSLDSGSALGPALQAAFKLLQP----TG-GRITIFQTCLPNRGPG 458 (901)
Q Consensus 387 ~f~p~~~~~lv~l~e~~~~i~~lL~~-L~~~~~--~~~~~~~~~G~AL~~A~~ll~~----~G-GrI~~F~~g~pt~GpG 458 (901)
+-. +.-..|.+|++. -...|. -+......+..||.+|..++.. .| =||++||+.-.-.|..
T Consensus 87 p~a-----------~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~ 155 (584)
T TIGR00578 87 PGA-----------KRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGND 155 (584)
T ss_pred CCH-----------HHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCc
Confidence 310 111123333332 111111 1223335899999999999965 23 3799999643222110
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEec
Q psy12437 459 ALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILN 504 (901)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s 504 (901)
+ ....-=...|.++...||.|++|.++
T Consensus 156 ~-------------------~~~~~a~~~a~dl~~~gi~ielf~l~ 182 (584)
T TIGR00578 156 S-------------------AKASRARTKAGDLRDTGIFLDLMHLK 182 (584)
T ss_pred h-------------------hHHHHHHHHHHHHHhcCeEEEEEecC
Confidence 0 00001133578888999999999764
No 62
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=94.91 E-value=0.59 Score=50.17 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=83.4
Q ss_pred CCCcEEEEEEEcchhHHhhc----hHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCcccc
Q psy12437 312 PQPAMYLFLLDVSQIAAQSG----YLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDI 387 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g----~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~ 387 (901)
....-++|+||.|.+..++. -++ .+..|..+|..++.+ +||++.|+..+.+ +.++++
T Consensus 58 kr~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le~g---~vgVv~Fg~~~~~--------------v~Plt~- 118 (266)
T cd01460 58 KRDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLEVG---QLGVCSFGEDVQI--------------LHPFDE- 118 (266)
T ss_pred ccCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCcCC---cEEEEEeCCCceE--------------eCCCCC-
Confidence 44688999999998754432 244 445677777888776 7999999986532 111111
Q ss_pred CCCCCCCcccchhhhHHHHHHHHHhCCc-cccCCCCCCCcHHHHHHHHHHhhcCC-----C----CEEEEEecCCCCCCC
Q psy12437 388 FLPSPENILVNLSECYDMIVDLLKQLPG-KFKDSLDSGSALGPALQAAFKLLQPT-----G----GRITIFQTCLPNRGP 457 (901)
Q Consensus 388 f~p~~~~~lv~l~e~~~~i~~lL~~L~~-~~~~~~~~~~~~G~AL~~A~~ll~~~-----G----GrI~~F~~g~pt~Gp 457 (901)
++ .. +..++.+.. .| ...++.+|.||..|..+++.. + .-|+++++|-|..-.
T Consensus 119 ------d~--------~~-~a~~~~l~~~~f---~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e 180 (266)
T cd01460 119 ------QF--------SS-QSGPRILNQFTF---QQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSE 180 (266)
T ss_pred ------Cc--------hh-hHHHHHhCcccC---CCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCc
Confidence 11 11 122333321 11 224467999999999988643 3 345555665422111
Q ss_pred CcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCC--ccCchhhhhcc
Q psy12437 458 GALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ--YVDLATLSGVS 517 (901)
Q Consensus 458 G~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~--~~~l~~l~~l~ 517 (901)
|. -..++.+|.+.||.|-.++.-.. .-.|..|....
T Consensus 181 ~~------------------------~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~ 218 (266)
T cd01460 181 GA------------------------QKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVS 218 (266)
T ss_pred cH------------------------HHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccc
Confidence 10 13457788899988777766442 33444554444
No 63
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=93.99 E-value=0.57 Score=48.18 Aligned_cols=143 Identities=16% Similarity=0.191 Sum_probs=80.8
Q ss_pred EEEEEEEcchhHHhh----c--hHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy12437 316 MYLFLLDVSQIAAQS----G--YLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 316 ~~vFvID~s~~a~~~----g--~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
-++|+||+|.+.... + -+..+++++...+..+......+|++++|++..+.+ .
T Consensus 4 dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~---------------------~ 62 (199)
T cd01457 4 DYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRY---------------------D 62 (199)
T ss_pred CEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcccc---------------------C
Confidence 478999999865421 1 356677777776665543222368888885542110 0
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH-hhcC--C------CCEEEEEecCCCCCCCCcc
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP--T------GGRITIFQTCLPNRGPGAL 460 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~--~------GGrI~~F~~g~pt~GpG~l 460 (901)
| +. +..+..+++.+.. ...+.++.||..|+. +++. . +.-|+++++|.++- ..
T Consensus 63 ~--------~~--~~~v~~~~~~~~p------~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d-~~-- 123 (199)
T cd01457 63 N--------VN--SSKVDQLFAENSP------DGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD-KD-- 123 (199)
T ss_pred C--------cC--HHHHHHHHhcCCC------CCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc-HH--
Confidence 1 11 3455566655431 255789999998874 4332 1 35678888887542 11
Q ss_pred cCCCCCCCCCCCCCCCCCchHHHHHHHHH---HHhh-CCcEEEEEEecCCccCchhhhhcccc
Q psy12437 461 QSRENPNQRSNDDPPHMNPATDFYKKIAL---ECTS-FYIAVDLFILNSQYVDLATLSGVSKF 519 (901)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~a~~fY~~la~---~~~~-~~isvdlf~~s~~~~~l~~l~~l~~~ 519 (901)
...+.|.+ ++.+ .++++.++.++.+.-+...|..|...
T Consensus 124 ---------------------~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~ 165 (199)
T cd01457 124 ---------------------AVERVIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQ 165 (199)
T ss_pred ---------------------HHHHHHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHH
Confidence 11122211 1111 47888888887765565555555543
No 64
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=93.57 E-value=3.7 Score=44.41 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=55.0
Q ss_pred CcHHHHHHHHHHhhcC-----------CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhh
Q psy12437 425 SALGPALQAAFKLLQP-----------TGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTS 493 (901)
Q Consensus 425 ~~~G~AL~~A~~ll~~-----------~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~ 493 (901)
+.+..||..|+-.+.. ..+||+++.++-+.. . ..|.. +=+..-.|.+
T Consensus 116 s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~----------~-------~QYi~-----~MN~iFaAqk 173 (276)
T PF03850_consen 116 SLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDS----------S-------SQYIP-----LMNCIFAAQK 173 (276)
T ss_pred hhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCc----------c-------HHHHH-----HHHHHHHHhc
Confidence 7788888888776642 236999964332111 0 01111 1234557888
Q ss_pred CCcEEEEEEecCCccCchhhhhccccCCceEEEeCCC
Q psy12437 494 FYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 530 (901)
Q Consensus 494 ~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f 530 (901)
.+|.||++.... -+-.-|...|..|||.-...+..
T Consensus 174 ~~v~IDv~~L~~--~~s~fLqQa~d~T~G~y~~~~~~ 208 (276)
T PF03850_consen 174 QKVPIDVCKLGG--KDSTFLQQASDITGGIYLKVSKP 208 (276)
T ss_pred CCceeEEEEecC--CchHHHHHHHHHhCceeeccCcc
Confidence 999999999876 45666899999999988877663
No 65
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.16 E-value=4.1 Score=44.00 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=56.2
Q ss_pred CCCcHHHHHHHHHHhhcC----------CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHh
Q psy12437 423 SGSALGPALQAAFKLLQP----------TGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECT 492 (901)
Q Consensus 423 ~~~~~G~AL~~A~~ll~~----------~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~ 492 (901)
..+.+..||..|+-.+.. ..+||+++..++ +.... -.. +-+....|.
T Consensus 117 ~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-----------~~~~q-----------Yi~-~mn~Ifaaq 173 (279)
T TIGR00627 117 SRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-----------DMALQ-----------YIP-LMNCIFSAQ 173 (279)
T ss_pred ccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-----------CchHH-----------HHH-HHHHHHHHH
Confidence 466688888888877632 247999998753 11000 011 236677889
Q ss_pred hCCcEEEEEEecCCccCchhhhhccccCCceEEEe
Q psy12437 493 SFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHI 527 (901)
Q Consensus 493 ~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y 527 (901)
+.+|.||++..+.+ -+..-+..+|+.|||.-...
T Consensus 174 k~~I~Idv~~L~~e-~~~~~lqQa~~~TgG~Y~~~ 207 (279)
T TIGR00627 174 KQNIPIDVVSIGGD-FTSGFLQQAADITGGSYLHV 207 (279)
T ss_pred HcCceEEEEEeCCc-cccHHHHHHHHHhCCEEecc
Confidence 99999999998654 45778999999999954444
No 66
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=93.05 E-value=5 Score=40.79 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=61.7
Q ss_pred HHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhc-CC--CC-EEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCCc
Q psy12437 404 DMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQ-PT--GG-RITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNP 479 (901)
Q Consensus 404 ~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~-~~--GG-rI~~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~ 479 (901)
+.+..+|+.+.-.+.. ..|..||..|++.|+ .. .. -||++++|--|.|- +. |
T Consensus 75 ~~l~~~l~~~q~g~ag-----~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~--i~-----------------P 130 (191)
T cd01455 75 ETLKMMHAHSQFCWSG-----DHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYG--IQ-----------------P 130 (191)
T ss_pred HHHHHHHHhcccCccC-----ccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCC--CC-----------------h
Confidence 5677788877643322 223388888888885 42 23 56667776533321 21 1
Q ss_pred hHHHHHHH-HHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCC
Q psy12437 480 ATDFYKKI-ALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (901)
Q Consensus 480 a~~fY~~l-a~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~ 529 (901)
.++ |..+.+.||-|..+.++. .|-..+..+++.|||.-|...+
T Consensus 131 -----~~aAa~lA~~~gV~iytIgiG~--~d~~~l~~iA~~tgG~~F~A~d 174 (191)
T cd01455 131 -----KKLADALAREPNVNAFVIFIGS--LSDEADQLQRELPAGKAFVCMD 174 (191)
T ss_pred -----HHHHHHHHHhCCCEEEEEEecC--CCHHHHHHHHhCCCCcEEEeCC
Confidence 244 456667888888777765 3667789999999999988754
No 67
>KOG4407|consensus
Probab=92.11 E-value=0.28 Score=60.69 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=6.8
Q ss_pred ccceeEEEEecCCc
Q psy12437 554 GFESVMRIRCTKGM 567 (901)
Q Consensus 554 g~~a~l~vr~S~gl 567 (901)
||--.+++-+-+|.
T Consensus 927 gWly~~q~~SkkGk 940 (1973)
T KOG4407|consen 927 GWLYVLQSSSKKGK 940 (1973)
T ss_pred cceeeeeecccCCc
Confidence 44444555555553
No 68
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=91.66 E-value=2 Score=44.89 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=72.6
Q ss_pred EEEEEEEcchhHHh-----hchHHHHHHHHHHHHhc-CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy12437 316 MYLFLLDVSQIAAQ-----SGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 316 ~~vFvID~s~~a~~-----~g~l~~~~~si~~~L~~-lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
+.+||||++....+ +..|+.+++++...+.. +-......||+|.|++.-+=-. .....-...+++.+++-+
T Consensus 1 ~~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~-~~~~~~~~i~~l~~l~~~-- 77 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNP-DEDSGYENIFVLQPLDPP-- 77 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST--TTT-STTEEEEEECC----
T ss_pred CEEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCc-ccccCCCceEEeecCCcc--
Confidence 46899999976542 12466666666666632 2112224799999987522100 001111122233222211
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCc----cccCCCCCCCcHHHHHHHHHHhhcC--C-----CCEEEEEecCCCCCCCC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPG----KFKDSLDSGSALGPALQAAFKLLQP--T-----GGRITIFQTCLPNRGPG 458 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~----~~~~~~~~~~~~G~AL~~A~~ll~~--~-----GGrI~~F~~g~pt~GpG 458 (901)
.-+.|..|.+.+.. .-..+......+..||.+|..++.. . .-||++||..- +|-
T Consensus 78 ------------~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d---~p~ 142 (224)
T PF03731_consen 78 ------------SAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDND---GPH 142 (224)
T ss_dssp ------------BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-S---STT
T ss_pred ------------CHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCC---CCC
Confidence 11233333333322 0012334456799999999998874 1 24888888743 111
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHH-HHHHHhhCCcEEEEEEe
Q psy12437 459 ALQSRENPNQRSNDDPPHMNPATDFYKK-IALECTSFYIAVDLFIL 503 (901)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~a~~fY~~-la~~~~~~~isvdlf~~ 503 (901)
. ..+ .-..-.++ .+.++...+|.+++|.+
T Consensus 143 ~--~~~--------------~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 143 E--DDD--------------ELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp T---CC--------------CHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred C--CHH--------------HHHHHHHhhccccchhcCcceeEeec
Confidence 1 100 01111122 26778899999999987
No 69
>KOG4274|consensus
Probab=90.79 E-value=1.4 Score=50.44 Aligned_cols=11 Identities=18% Similarity=0.126 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q psy12437 670 LSDAREAFLNV 680 (901)
Q Consensus 670 ~~d~r~~l~~~ 680 (901)
+..+-+.|+.|
T Consensus 706 ~~Sit~lLntW 716 (742)
T KOG4274|consen 706 LSSITDLLNTW 716 (742)
T ss_pred cchHHHHHHHH
Confidence 33444444444
No 70
>KOG2807|consensus
Probab=90.21 E-value=4.1 Score=43.84 Aligned_cols=149 Identities=21% Similarity=0.280 Sum_probs=92.2
Q ss_pred CcEEEEEEEcchhHHhhc----hHHHHHHHHHHHHhcC-CCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccC
Q psy12437 314 PAMYLFLLDVSQIAAQSG----YLYTVCEVLLNQLKSM-PGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF 388 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g----~l~~~~~si~~~L~~l-p~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f 388 (901)
-...+.|||+|....+.. .+..+.+.+..-+... ..|+-..||||+- +++.. -.+.|+
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~---------k~g~A----~~lt~l---- 122 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISI---------KDGKA----DRLTDL---- 122 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEE---------ecchh----hHHHHh----
Confidence 356788999998766554 3455555555555433 3455557888874 22211 122222
Q ss_pred CCCCCCcccchhhh-HHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCC----EEEEEecCCCCCCCCcccCC
Q psy12437 389 LPSPENILVNLSEC-YDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGG----RITIFQTCLPNRGPGALQSR 463 (901)
Q Consensus 389 ~p~~~~~lv~l~e~-~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GG----rI~~F~~g~pt~GpG~l~~~ 463 (901)
..+ +..|+.| ..+. .-.....+-.||+.|...|+...| .|++..++..|.-||-+
T Consensus 123 -----------tgnp~~hI~aL-~~~~-----~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi--- 182 (378)
T KOG2807|consen 123 -----------TGNPRIHIHAL-KGLT-----ECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDI--- 182 (378)
T ss_pred -----------cCCHHHHHHHH-hccc-----ccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccH---
Confidence 111 2223332 2221 223456788899999999997532 56777788888877654
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCce
Q psy12437 464 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGC 523 (901)
Q Consensus 464 ~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~ 523 (901)
|+.+ ..+.+..|-|.++..+.+ +..-+.||+.|||.
T Consensus 183 --------------------~~tI-~~lk~~kIRvsvIgLsaE---v~icK~l~kaT~G~ 218 (378)
T KOG2807|consen 183 --------------------YETI-DKLKAYKIRVSVIGLSAE---VFICKELCKATGGR 218 (378)
T ss_pred --------------------HHHH-HHHHhhCeEEEEEeechh---HHHHHHHHHhhCCe
Confidence 4444 457778899999988744 55558999999993
No 71
>PRK10997 yieM hypothetical protein; Provisional
Probab=89.78 E-value=7.3 Score=45.46 Aligned_cols=149 Identities=13% Similarity=0.217 Sum_probs=85.4
Q ss_pred cEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCC
Q psy12437 315 AMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 394 (901)
Q Consensus 315 p~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~ 394 (901)
--+++|||+|.+.. |.-+....++..+|-.+--..+.++++|.|++.+..|.+... .+
T Consensus 324 GpiII~VDtSGSM~--G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~~l~~~--------------------~g 381 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTYELTGP--------------------DG 381 (487)
T ss_pred CcEEEEEECCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceeeccCCc--------------------cC
Confidence 34788999998653 443444445555554332212237999999998776543211 11
Q ss_pred cccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy12437 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRSN 471 (901)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~ 471 (901)
...+..+|... + ..++.+..||..|...++. ..|-|++++++....
T Consensus 382 --------l~~ll~fL~~~---f----~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~---------------- 430 (487)
T PRK10997 382 --------LEQAIRFLSQS---F----RGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQR---------------- 430 (487)
T ss_pred --------HHHHHHHHHHh---c----CCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCC----------------
Confidence 12223333322 1 3467799999989888865 357888887764211
Q ss_pred CCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCC
Q psy12437 472 DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (901)
Q Consensus 472 ~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~ 529 (901)
...++.+.+...-.+.+.-+...+++.. +-..+..++.. ++.|+.
T Consensus 431 -------~~eel~~~L~~Lk~~~~~rf~~l~i~~~--~~p~l~~ifD~----~W~~d~ 475 (487)
T PRK10997 431 -------LPDELVAKVKELQRQHQHRFHAVAMSAH--GKPGIMRIFDH----IWRFDT 475 (487)
T ss_pred -------ChHHHHHHHHHHHHhcCcEEEEEEeCCC--CCchHHHhcCe----eeEecC
Confidence 1234555554443447777777777642 33444555544 676654
No 72
>KOG2353|consensus
Probab=88.07 E-value=17 Score=46.66 Aligned_cols=125 Identities=17% Similarity=0.201 Sum_probs=80.5
Q ss_pred CCCCccccccccEEEEeccc---ccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEcc
Q psy12437 286 DPYRRPEIQSATVEYLATAD---YTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDS 362 (901)
Q Consensus 286 d~~~rpEL~~~tvEy~~p~~---y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~ 362 (901)
-..+++|=...++++-..+. |+.. ...|--.+|++|+|.. +..-.+..++..+.++|+.|.++. .|-++||++
T Consensus 195 a~~W~~~~~~~~idl~D~R~r~Wyi~a-At~pKdiviLlD~SgS-m~g~~~~lak~tv~~iLdtLs~~D--fvni~tf~~ 270 (1104)
T KOG2353|consen 195 AAAWFDNNTDNSIDLYDCRNRSWYIQA-ATSPKDIVILLDVSGS-MSGLRLDLAKQTVNEILDTLSDND--FVNILTFNS 270 (1104)
T ss_pred CccCccCCCCCcceeeecccccccccc-cCCccceEEEEecccc-ccchhhHHHHHHHHHHHHhcccCC--eEEEEeecc
Confidence 44556655677777766542 4443 7788999999999974 333357888899999999999888 899999999
Q ss_pred EEEEEEcCCCCCCCceeeccCccccCCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC
Q psy12437 363 AVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP 440 (901)
Q Consensus 363 ~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~ 440 (901)
.+..-. ++..+.++. ---..++.|.++++.|. .....-+-.|+..|..+|..
T Consensus 271 ~~~~v~-------------pc~~~~lvq-------At~~nk~~~~~~i~~l~------~k~~a~~~~~~e~aF~lL~~ 322 (1104)
T KOG2353|consen 271 EVNPVS-------------PCFNGTLVQ-------ATMRNKKVFKEAIETLD------AKGIANYTAALEYAFSLLRD 322 (1104)
T ss_pred ccCccc-------------ccccCceee-------cchHHHHHHHHHHhhhc------cccccchhhhHHHHHHHHHH
Confidence 866421 111111111 11124555666666664 12223456677777777753
No 73
>KOG3768|consensus
Probab=87.61 E-value=8.1 Score=44.80 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=32.4
Q ss_pred ccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhcccccceeEEEEec
Q psy12437 507 YVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCT 564 (901)
Q Consensus 507 ~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~S 564 (901)
.+|-.-+..+|+.|||+-|..-+ -..+...|..++.. .-|.++++..|-
T Consensus 191 p~Dds~IermCevTGGRSysV~S--------pr~lnqciesLvqk-vQ~gVvv~FE~~ 239 (888)
T KOG3768|consen 191 PIDDSVIERMCEVTGGRSYSVVS--------PRQLNQCIESLVQK-VQYGVVVRFECL 239 (888)
T ss_pred CCCchhhHHhhhhcCCceeeeeC--------HHHHHHHHHHHHHh-hccCeEEEeeec
Confidence 35667789999999999887643 23455555554443 556667766653
No 74
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=86.37 E-value=39 Score=34.75 Aligned_cols=83 Identities=19% Similarity=0.139 Sum_probs=50.1
Q ss_pred CCcHHHHHHHHHHhhcCC---CCEEEEEec--CCCCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEE
Q psy12437 424 GSALGPALQAAFKLLQPT---GGRITIFQT--CLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAV 498 (901)
Q Consensus 424 ~~~~G~AL~~A~~ll~~~---GGrI~~F~~--g~pt~GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isv 498 (901)
.+|.|.||..|..+|... +.|-++=.+ |+.|.|+.-+ +..-..+...||.|
T Consensus 94 ~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~------------------------~~ard~~~~~GitI 149 (205)
T PF06707_consen 94 RTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPV------------------------TSARDAAVAAGITI 149 (205)
T ss_pred CchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCcc------------------------HHHHHHHHHCCeEE
Confidence 399999999999999863 455555554 4444554222 12223455689999
Q ss_pred EEEEecCCcc----Cchhhhh--ccccCCceEEEeCCC
Q psy12437 499 DLFILNSQYV----DLATLSG--VSKFSSGCIHHIPLY 530 (901)
Q Consensus 499 dlf~~s~~~~----~l~~l~~--l~~~TGG~v~~y~~f 530 (901)
+=+.+..... +|...-. +..-.|..|..-.+|
T Consensus 150 NgL~I~~~~~~~~~~L~~yy~~~VIgGpgAFV~~a~~~ 187 (205)
T PF06707_consen 150 NGLAILDDDPFGGADLDAYYRRCVIGGPGAFVETARGF 187 (205)
T ss_pred eeeEecCCCCCccccHHHHHhhhcccCCCceEEEcCCH
Confidence 9998877665 6655433 332333344444444
No 75
>KOG0444|consensus
Probab=85.88 E-value=1.3 Score=51.78 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=27.1
Q ss_pred ccccccccccCeEEEEeCCceEEEEecCC
Q psy12437 781 LQLSAERLQATGTYLLNMPDLIIILVRHG 809 (901)
Q Consensus 781 l~Ls~~~l~~~~iyLld~g~~i~i~vG~~ 809 (901)
++|+..+|++--+||||.|.+||||-|..
T Consensus 639 Vpl~~tSLDPRf~FlLD~G~~IyiW~G~~ 667 (1255)
T KOG0444|consen 639 VPLSVTSLDPRFCFLLDAGETIYIWSGYK 667 (1255)
T ss_pred cCccccccCcceEEEEeCCceEEEEeccc
Confidence 66899999999999999999999999965
No 76
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=85.70 E-value=0.24 Score=60.37 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=0.0
Q ss_pred ceeeecc
Q psy12437 754 PELYPIH 760 (901)
Q Consensus 754 P~L~~~~ 760 (901)
|.+|+|+
T Consensus 761 P~~~svt 767 (799)
T PF09606_consen 761 PDKHSVT 767 (799)
T ss_dssp -------
T ss_pred CCceeHH
Confidence 3333333
No 77
>KOG1151|consensus
Probab=85.46 E-value=1.3 Score=49.56 Aligned_cols=7 Identities=43% Similarity=0.335 Sum_probs=3.1
Q ss_pred HHHHhhc
Q psy12437 433 AAFKLLQ 439 (901)
Q Consensus 433 ~A~~ll~ 439 (901)
-+..||+
T Consensus 351 rqrklLa 357 (775)
T KOG1151|consen 351 RQRKLLA 357 (775)
T ss_pred HHHHHHh
Confidence 3444554
No 78
>KOG0443|consensus
Probab=81.92 E-value=3.9 Score=49.20 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=29.1
Q ss_pred ccccccccCeEEEEeCC-ceEEEEecCCCChHH
Q psy12437 783 LSAERLQATGTYLLNMP-DLIIILVRHGTSPAI 814 (901)
Q Consensus 783 Ls~~~l~~~~iyLld~g-~~i~i~vG~~v~~~~ 814 (901)
|+.+-|+.+.+||||+| ..||||+|+.++.+-
T Consensus 277 l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~E 309 (827)
T KOG0443|consen 277 LTKDLLDTEDCYILDCGGGEIFVWKGRQASLDE 309 (827)
T ss_pred hhHHhhccCCeEEEecCCceEEEEeCCCCCHHH
Confidence 78889999999999999 999999999988664
No 79
>KOG2487|consensus
Probab=80.99 E-value=30 Score=36.57 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=33.8
Q ss_pred HHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCC
Q psy12437 485 KKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (901)
Q Consensus 485 ~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~ 529 (901)
=+.--.|.+.+|.||++....+ -..|...|..|||.....+.
T Consensus 186 MNciFaAqKq~I~Idv~~l~~~---s~~LqQa~D~TGG~YL~v~~ 227 (314)
T KOG2487|consen 186 MNCIFAAQKQNIPIDVVSLGGD---SGFLQQACDITGGDYLHVEK 227 (314)
T ss_pred HHHHHHHHhcCceeEEEEecCC---chHHHHHHhhcCCeeEecCC
Confidence 3445567889999999999877 34578999999999888765
No 80
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=80.64 E-value=0.51 Score=57.65 Aligned_cols=7 Identities=0% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHH
Q psy12437 682 CDVLSTY 688 (901)
Q Consensus 682 i~~l~~y 688 (901)
.++-.+|
T Consensus 680 a~Ld~kF 686 (799)
T PF09606_consen 680 ARLDPKF 686 (799)
T ss_dssp -------
T ss_pred HHhcccc
Confidence 3333333
No 81
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=79.68 E-value=84 Score=32.90 Aligned_cols=101 Identities=16% Similarity=0.199 Sum_probs=63.3
Q ss_pred HHHHHHHhCCccccCCC-CCCCcHHHHHHHHHHhhcC-------CC-----CEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy12437 405 MIVDLLKQLPGKFKDSL-DSGSALGPALQAAFKLLQP-------TG-----GRITIFQTCLPNRGPGALQSRENPNQRSN 471 (901)
Q Consensus 405 ~i~~lL~~L~~~~~~~~-~~~~~~G~AL~~A~~ll~~-------~G-----GrI~~F~~g~pt~GpG~l~~~~~~~~~~~ 471 (901)
.+...|++|+ |..+. ....+..-+|.+|+.++.. .+ -+.|+...++|..=|= .+
T Consensus 91 ~fl~~L~~I~--f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~----~~------- 157 (226)
T PF11265_consen 91 KFLQWLDAIQ--FSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPV----NE------- 157 (226)
T ss_pred HHHHHHHccC--cCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccc----cC-------
Confidence 3445566664 33333 3334488888899888873 11 2455566666643221 11
Q ss_pred CCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEE
Q psy12437 472 DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHH 526 (901)
Q Consensus 472 ~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~ 526 (901)
... -..+.++.+|..+.+++|.+.++.= --+..+..|-+..+|....
T Consensus 158 -~~~---~~~~~~d~la~~~~~~~I~LSiisP----rklP~l~~Lfeka~~~~~~ 204 (226)
T PF11265_consen 158 -CPQ---YSGKTCDQLAVLISERNISLSIISP----RKLPSLRSLFEKAKGNPRA 204 (226)
T ss_pred -CCc---ccCCCHHHHHHHHHhcCceEEEEcC----ccCHHHHHHHHhcCCCccc
Confidence 111 1224678999999999999999862 4567788888888887765
No 82
>KOG0444|consensus
Probab=78.78 E-value=5.5 Score=46.84 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=38.3
Q ss_pred hhhcceeeecccCCCCCCcccCCCccccCc-----cccccccccccCeEEEEeCCceEEEEecCCCChH
Q psy12437 750 LSIYPELYPIHTLDQDPTIEWNELQVPIPR-----ILQLSAERLQATGTYLLNMPDLIIILVRHGTSPA 813 (901)
Q Consensus 750 ~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~-----~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~ 813 (901)
.--+|+||.+.- |. |.+.+|. ...|..+-|.+.++|+|||...||||+|+..+.-
T Consensus 730 ~p~qpkLYkV~l-----Gm----GyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RL 789 (1255)
T KOG0444|consen 730 VPEQPKLYKVNL-----GM----GYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRL 789 (1255)
T ss_pred CCCCcceEEEcc-----cc----ceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchHH
Confidence 445899998851 11 2233332 1235567778999999999999999999986653
No 83
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=77.59 E-value=17 Score=40.60 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=97.4
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHH---HH-hcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLN---QL-KSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~---~L-~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
-.+.+.+||+|++.+-.|..--+|+.-+. .+ -..+++. +.||+|+..- +.+-+++
T Consensus 463 ~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~---l~~i~Fgr~A------------~~v~v~e------ 521 (652)
T COG4867 463 QAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDA---LQIIAFGRYA------------RTVTAAE------ 521 (652)
T ss_pred ccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcc---eEEEeccchh------------cccCHHH------
Confidence 45678899999998877754444443222 22 2356664 8999987541 1111111
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC---CEEEEEecCCCCC----CCCcccC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG---GRITIFQTCLPNR----GPGALQS 462 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G---GrI~~F~~g~pt~----GpG~l~~ 462 (901)
|..++. -..-.+.+--||..|-.+++... -.|++.+.|-||. |-|.+..
T Consensus 522 --------------------Lt~l~~----v~eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~ 577 (652)
T COG4867 522 --------------------LTGLAG----VYEQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVF 577 (652)
T ss_pred --------------------HhcCCC----ccccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEe
Confidence 122221 12334667788899999887643 4889999999984 4454433
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeC
Q psy12437 463 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIP 528 (901)
Q Consensus 463 ~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~ 528 (901)
-+.+. +-..++ +-.+.+ ..|.+.|+-|.+|....|.==..-+..+++.++|.++.-+
T Consensus 578 f~yp~----DP~t~~----~Tvr~~-d~~~r~G~q~t~FrLg~DpgL~~Fv~qva~rv~G~vv~pd 634 (652)
T COG4867 578 FDYPP----DPRTIA----HTVRGF-DDMARLGAQVTIFRLGSDPGLARFIDQVARRVQGRVVVPD 634 (652)
T ss_pred cCCCC----ChhHHH----HHHHHH-HHHHhccceeeEEeecCCHhHHHHHHHHHHHhCCeEEecC
Confidence 22111 000011 112233 3688999999999998885333446889999999998643
No 84
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=75.52 E-value=1.6e+02 Score=33.86 Aligned_cols=271 Identities=14% Similarity=0.157 Sum_probs=138.3
Q ss_pred CcEEEEEEEcchhHHh-hchHHHHHHHHHHHHhcCCCCCCceEEEEEE-ccEEEEEEcCCCCCCCceeec--cCccccC-
Q psy12437 314 PAMYLFLLDVSQIAAQ-SGYLYTVCEVLLNQLKSMPGDRRTSIAIITY-DSAVHFYSLAEGQTQPSQMIL--TDIDDIF- 388 (901)
Q Consensus 314 pp~~vFvID~s~~a~~-~g~l~~~~~si~~~L~~lp~~~~~~VglItf-d~~V~~y~l~~~~~~~~~~v~--~dl~d~f- 388 (901)
|-=..|+.|+|.+..+ -.-++.+...|...|..+-.+. |+||=+| |+.|.=|-... |..+.- .+....-
T Consensus 99 PvDLYyLMDlS~SM~ddl~~lk~lg~~L~~~m~~it~n~--rlGfGsFVDK~v~P~~~t~----p~~l~~PC~~~~~~c~ 172 (423)
T smart00187 99 PVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSNF--RLGFGSFVDKTVSPFVSTR----PEKLENPCPNYNLTCE 172 (423)
T ss_pred ccceEEEEeCCccHHHHHHHHHHHHHHHHHHHHhcccCc--eeeEEEeecCccCCcccCC----HHHhcCCCcCCCCCcC
Confidence 5557799999976443 1235556667777777776665 8999888 66554332111 111100 0000000
Q ss_pred CCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHh--hc-C-CCCEEEEEecCCCC--CCCCcccC
Q psy12437 389 LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL--LQ-P-TGGRITIFQTCLPN--RGPGALQS 462 (901)
Q Consensus 389 ~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l--l~-~-~GGrI~~F~~g~pt--~GpG~l~~ 462 (901)
.|..-+-.++|.+..+.+.+.+.+.. ...+...|+..+-+-+++|+-- ++ . ..-||++|++-..- .|-|+|..
T Consensus 173 p~f~f~~~L~LT~~~~~F~~~V~~~~-iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaG 251 (423)
T smart00187 173 PPYGFKHVLSLTDDTDEFNEEVKKQR-ISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGDGKLAG 251 (423)
T ss_pred CCcceeeeccCCCCHHHHHHHHhhce-eecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCCccccCCcceee
Confidence 11112224677766666666666543 2244556777777777777411 11 1 22489999887775 58888765
Q ss_pred CCCCCCC-CC-CCCCCCCchH----HHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEE-EeCCCCCCcc
Q psy12437 463 RENPNQR-SN-DDPPHMNPAT----DFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIH-HIPLYSGKNM 535 (901)
Q Consensus 463 ~~~~~~~-~~-~~~~~~~~a~----~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~-~y~~f~~~~~ 535 (901)
.-.++.. -| ++.-.+..++ .=-..|+.++.+++|. =||+.+....+++ ..|+.+-.|... .... + +
T Consensus 252 Iv~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~-~IFAVT~~~~~~Y--~~Ls~lipgs~vg~Ls~-D---S 324 (423)
T smart00187 252 IVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNIN-PIFAVTKKQVSLY--KELSALIPGSSVGVLSE-D---S 324 (423)
T ss_pred EecCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCce-EEEEEcccchhHH--HHHHHhcCcceeeeccc-C---c
Confidence 4322210 11 1110111111 1135788888888875 4898888887765 333333334332 2111 1 2
Q ss_pred hhHHHHHHHHHHhhhcccccceeEEEEe-cCCceEEEEecceecc--CCCceeecCCCCCceEEEEEEEec
Q psy12437 536 SHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTFHGNFFVR--STDLLALPNVNPDAGYGIQISIDE 603 (901)
Q Consensus 536 ~~~~~~~~dl~~~l~~~~g~~a~l~vr~-S~gl~i~~~~G~~~~~--~t~~~~l~~i~~~~s~~~~~~~~~ 603 (901)
.+.-.|.++-+..+ .-.++|+... +.|++++-. ..|-.+ ....-+..++.....+.|+.++.-
T Consensus 325 sNIv~LI~~aY~~i----~S~V~l~~~~~p~~v~~~y~-s~C~~g~~~~~~~~C~~v~iG~~V~F~v~vta 390 (423)
T smart00187 325 SNVVELIKDAYNKI----SSRVELEDNSLPEGVSVTYT-SSCPGGVVGPGTRKCEGVKIGDTVSFEVTVTA 390 (423)
T ss_pred chHHHHHHHHHHhh----ceEEEEecCCCCCcEEEEEE-eeCCCCCcccCCcccCCcccCCEEEEEEEEEe
Confidence 23344555444432 2334444442 456666522 122111 011124556777777777777763
No 85
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=74.61 E-value=9.6 Score=43.70 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=79.6
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 393 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~ 393 (901)
+| ++.|||.|.+. .|..+....++.-+|-.+-.-.++++.++.||+.+.=|.+.... .
T Consensus 273 Gp-villlD~SGSM--~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~~k~-------------------~ 330 (437)
T COG2425 273 GP-VILLLDKSGSM--SGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELYEKK-------------------I 330 (437)
T ss_pred CC-EEEEEeCCCCc--CCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeecCCc-------------------c
Confidence 55 55689999753 34444444455555533222223489999999944333332210 0
Q ss_pred CcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCC
Q psy12437 394 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRS 470 (901)
Q Consensus 394 ~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~ 470 (901)
.++.+|+.|...|.. ++-+-.||..|+..++. .++.|++.|+|-+-.
T Consensus 331 -----------~~~e~i~fL~~~f~G----GTD~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~--------------- 380 (437)
T COG2425 331 -----------DIEELIEFLSYVFGG----GTDITKALRSALEDLKSRELFKADIVVITDGEDER--------------- 380 (437)
T ss_pred -----------CHHHHHHHHhhhcCC----CCChHHHHHHHHHHhhcccccCCCEEEEeccHhhh---------------
Confidence 123344444433333 36678888888888875 568999999975211
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc-cCchhhhh
Q psy12437 471 NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY-VDLATLSG 515 (901)
Q Consensus 471 ~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~-~~l~~l~~ 515 (901)
..+|-.+..+...+..+=|.-.+++... -++..+..
T Consensus 381 ---------~~~~~~~v~e~~k~~~~rl~aV~I~~~~~~~l~~Isd 417 (437)
T COG2425 381 ---------LDDFLRKVKELKKRRNARLHAVLIGGYGKPGLMRISD 417 (437)
T ss_pred ---------hhHHHHHHHHHHHHhhceEEEEEecCCCCcccceeee
Confidence 1355556665555556655555555443 45554443
No 86
>KOG4274|consensus
Probab=73.61 E-value=11 Score=43.64 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=5.1
Q ss_pred CCHHHHHHHHHHH
Q psy12437 668 HSLSDAREAFLNV 680 (901)
Q Consensus 668 ~~~~d~r~~l~~~ 680 (901)
.++.|......+.
T Consensus 707 ~Sit~lLntWe~~ 719 (742)
T KOG4274|consen 707 SSITDLLNTWEEQ 719 (742)
T ss_pred chHHHHHHHHHHH
Confidence 3444443333333
No 87
>KOG4592|consensus
Probab=69.11 E-value=43 Score=39.40 Aligned_cols=9 Identities=11% Similarity=0.490 Sum_probs=4.0
Q ss_pred EEEEEeeec
Q psy12437 614 QVAVLYTSS 622 (901)
Q Consensus 614 Q~allYt~~ 622 (901)
++.++|+..
T Consensus 538 ~I~~~~~~k 546 (728)
T KOG4592|consen 538 GICSMYDNK 546 (728)
T ss_pred ceeEeeecc
Confidence 444444433
No 88
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=63.28 E-value=13 Score=35.25 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=59.3
Q ss_pred EEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCccc
Q psy12437 318 LFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILV 397 (901)
Q Consensus 318 vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~lv 397 (901)
+++||+|.+.- ...|..+...|...+... .. +|-+|.||..|+-.. .+.+.++.
T Consensus 2 ~vaiDtSGSis-~~~l~~fl~ev~~i~~~~--~~--~v~vi~~D~~v~~~~-----------~~~~~~~~---------- 55 (126)
T PF09967_consen 2 VVAIDTSGSIS-DEELRRFLSEVAGILRRF--PA--EVHVIQFDAEVQDVQ-----------VFRSLEDE---------- 55 (126)
T ss_pred EEEEECCCCCC-HHHHHHHHHHHHHHHHhC--CC--CEEEEEECCEeeeee-----------EEeccccc----------
Confidence 68999998643 334666777777777666 22 699999999987421 11110000
Q ss_pred chhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCC
Q psy12437 398 NLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNR 455 (901)
Q Consensus 398 ~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~ 455 (901)
+..+ .-..+.++++.+++..+...- ....-|++||+|-+..
T Consensus 56 ------------~~~~----~~~GgGGTdf~pvf~~~~~~~-~~~~~vi~fTDg~~~~ 96 (126)
T PF09967_consen 56 ------------LRDI----KLKGGGGTDFRPVFEYLEENR-PRPSVVIYFTDGEGWP 96 (126)
T ss_pred ------------cccc----ccCCCCCCcchHHHHHHHhcC-CCCCEEEEEeCCCCCC
Confidence 0111 124567888999988887654 3456788999987543
No 89
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=58.85 E-value=2.3e+02 Score=29.37 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=51.9
Q ss_pred CCCcHHHHHHHHHHhhcC------CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCc
Q psy12437 423 SGSALGPALQAAFKLLQP------TGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYI 496 (901)
Q Consensus 423 ~~~~~G~AL~~A~~ll~~------~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~i 496 (901)
...-.|-|++.++.+.-. .-+||++|+.+ | ||... .|+ | |-+---.|-+.||
T Consensus 127 qr~~v~gams~glay~n~~~~e~slkSriliftls----G------~d~~~-------qYi-p----~mnCiF~Aqk~~i 184 (296)
T COG5242 127 QRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLS----G------RDRKD-------QYI-P----YMNCIFAAQKFGI 184 (296)
T ss_pred ceeehhhhhhhhHHHHhhhcccccccceEEEEEec----C------chhhh-------hhc-h----hhhheeehhhcCC
Confidence 345578888888887743 34899999872 1 22111 010 0 1111223456789
Q ss_pred EEEEEEecCCccCchhhhhccccCCceEEEeCC
Q psy12437 497 AVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (901)
Q Consensus 497 svdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~ 529 (901)
-||+|-+... -..|...|..|||.-...++
T Consensus 185 pI~v~~i~g~---s~fl~Q~~daTgG~Yl~ve~ 214 (296)
T COG5242 185 PISVFSIFGN---SKFLLQCCDATGGDYLTVED 214 (296)
T ss_pred ceEEEEecCc---cHHHHHHhhccCCeeEeecC
Confidence 9999987654 35578899999998877765
No 90
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=56.45 E-value=3.7e+02 Score=31.15 Aligned_cols=266 Identities=14% Similarity=0.187 Sum_probs=128.0
Q ss_pred CcEEEEEEEcchhHHhh-chHHHHHHHHHHHHhcCCCCCCceEEEEEE-ccEEEEEEcCCCCCCCceeeccCccccC---
Q psy12437 314 PAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITY-DSAVHFYSLAEGQTQPSQMILTDIDDIF--- 388 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~-g~l~~~~~si~~~L~~lp~~~~~~VglItf-d~~V~~y~l~~~~~~~~~~v~~dl~d~f--- 388 (901)
|-=..|++|+|....+. .-|+.+-..|...|..+-.+. |+||=+| |+.|.=|- . ..|. .+..+.
T Consensus 102 PvDLYyLmDlS~Sm~ddl~~l~~lg~~l~~~~~~it~~~--~~GfGsfvdK~~~P~~--~--~~p~-----~l~~pc~~~ 170 (426)
T PF00362_consen 102 PVDLYYLMDLSYSMKDDLENLKSLGQDLAEEMRNITSNF--RLGFGSFVDKPVMPFV--S--TTPE-----KLKNPCPSK 170 (426)
T ss_dssp -EEEEEEEE-SGGGHHHHHHHCCCCHHHHHHHHTT-SSE--EEEEEEESSSSSTTTS--T---SSH-----CHHSTSCCT
T ss_pred ceeEEEEeechhhhhhhHHHHHHHHHHHHHHHHhcCccc--eEechhhcccccCCcc--c--CChh-----hhcCccccc
Confidence 55578999999864331 123344467888888886665 8999888 44332110 0 0111 111221
Q ss_pred -----CCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH--hhc--CCCCEEEEEecCCCC--CCC
Q psy12437 389 -----LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK--LLQ--PTGGRITIFQTCLPN--RGP 457 (901)
Q Consensus 389 -----~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~--ll~--~~GGrI~~F~~g~pt--~Gp 457 (901)
.|..-+-.++|.+....+...+.+.. .-.+-..|+..+-+-+++|+- .+. ...-||++|++-..- .|-
T Consensus 171 ~~~c~~~~~f~~~l~Lt~~~~~F~~~v~~~~-is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~~fH~agD 249 (426)
T PF00362_consen 171 NPNCQPPFSFRHVLSLTDDITEFNEEVNKQK-ISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDAGFHFAGD 249 (426)
T ss_dssp TS--B---SEEEEEEEES-HHHHHHHHHTS---B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS-B--TTG
T ss_pred CCCCCCCeeeEEeecccchHHHHHHhhhhcc-ccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCCccccccc
Confidence 11111224567776666777777653 223445677777777776643 222 123589988887763 688
Q ss_pred CcccCCCCCCCC-CC-CCCCCCCc----hHHHHHHHHHHHhhCCcEEEEEEecCCccCchh-hhhccccCCceEEEeCCC
Q psy12437 458 GALQSRENPNQR-SN-DDPPHMNP----ATDFYKKIALECTSFYIAVDLFILNSQYVDLAT-LSGVSKFSSGCIHHIPLY 530 (901)
Q Consensus 458 G~l~~~~~~~~~-~~-~~~~~~~~----a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~-l~~l~~~TGG~v~~y~~f 530 (901)
|++...-.++.. -| ++...+.. ...-...|...+.+++|. =||+.+....++++ |..+. .|+.+-....
T Consensus 250 g~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~-~IFAVt~~~~~~Y~~L~~~i--~~s~vg~L~~- 325 (426)
T PF00362_consen 250 GKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNIN-PIFAVTKDVYSIYEELSNLI--PGSSVGELSS- 325 (426)
T ss_dssp GGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEE-EEEEEEGGGHHHHHHHHHHS--TTEEEEEEST-
T ss_pred cccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHcCCE-EEEEEchhhhhHHHHHhhcC--CCceeccccc-
Confidence 888765433321 12 11111111 223356788888888864 58888877666542 33333 3444544433
Q ss_pred CCCcchhHHHHHHHHHHhhhcccccceeEEEEe-cCCceEEEEecceeccC--CCceeecCCCCCceEEEEEEEec
Q psy12437 531 SGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTFHGNFFVRS--TDLLALPNVNPDAGYGIQISIDE 603 (901)
Q Consensus 531 ~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~-S~gl~i~~~~G~~~~~~--t~~~~l~~i~~~~s~~~~~~~~~ 603 (901)
+ +.....+.++-+..+ .-.+.|+... .++++| .+..+|..+. ...-...++....++.|++.+.-
T Consensus 326 d---SsNIv~LI~~aY~~i----~s~V~L~~~~~p~~v~v-~y~s~C~~~~~~~~~~~C~~V~iG~~V~F~VtVta 393 (426)
T PF00362_consen 326 D---SSNIVQLIKEAYNKI----SSKVELKHDNAPDGVKV-SYTSNCPNGSTVPGTNECSNVKIGDTVTFNVTVTA 393 (426)
T ss_dssp T---SHTHHHHHHHHHHHH----CTEEEEEECS--TTEEE-EEEEEESSSEEEECCEEECSE-TT-EEEEEEEEEE
T ss_pred C---chhHHHHHHHHHHHH----hheEEEEecCCCCcEEE-EEEEEccCCcccCcCccccCEecCCEEEEEEEEEE
Confidence 1 222344444444333 2333444222 345666 3333333211 11244556666777777766664
No 91
>KOG4407|consensus
Probab=55.27 E-value=6.4 Score=49.61 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=11.0
Q ss_pred CCChHhhHhhhcceeeec
Q psy12437 742 CLPLNSLMLSIYPELYPI 759 (901)
Q Consensus 742 ~~~~~~~~~~iyP~L~~~ 759 (901)
+|.+.++..||=|.|..-
T Consensus 1307 kMEprNLAi~FGPsiVRt 1324 (1973)
T KOG4407|consen 1307 KMEPRNLAIMFGPSIVRT 1324 (1973)
T ss_pred cccccceeEEeccceecc
Confidence 455566666666666544
No 92
>KOG4592|consensus
Probab=54.50 E-value=41 Score=39.60 Aligned_cols=6 Identities=50% Similarity=0.617 Sum_probs=2.4
Q ss_pred CCCccc
Q psy12437 22 QVPLIA 27 (901)
Q Consensus 22 ~~p~~~ 27 (901)
+-|..+
T Consensus 66 ~~~~N~ 71 (728)
T KOG4592|consen 66 PAPLNA 71 (728)
T ss_pred CCCcCc
Confidence 444333
No 93
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=51.05 E-value=3.8 Score=30.32 Aligned_cols=18 Identities=0% Similarity=-0.391 Sum_probs=11.4
Q ss_pred CcCccCcccccCCCCCCC
Q psy12437 267 NLPEIHEQFLYDRNTEMF 284 (901)
Q Consensus 267 ~~~~~p~~~~~~~~~~~~ 284 (901)
+.|.|++|...|+++..|
T Consensus 23 ~~w~C~~C~~~N~lp~~Y 40 (40)
T PF04810_consen 23 KTWICNFCGTKNPLPPHY 40 (40)
T ss_dssp TEEEETTT--EEE--GGG
T ss_pred CEEECcCCCCcCCCCCCC
Confidence 789999998887766554
No 94
>PF02905 EBV-NA1: Epstein Barr virus nuclear antigen-1, DNA-binding domain; InterPro: IPR004186 The Epstein-Barr virus (strain GD1) nuclear antigen 1 (EBNA1) binds to and activates DNA replication from the latent origin of replication. The crystal structure of the DNA-binding and dimerization domains were solved [], and it was found that EBNA1 appears to bind DNA via two independent regions, the core and the flanking DNA-binding domains. This DNA-binding domain has a ferredoxin-like fold.; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0006260 DNA replication, 0006275 regulation of DNA replication, 0045893 positive regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1B3T_B 1VHI_B.
Probab=47.67 E-value=62 Score=30.08 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEE
Q psy12437 333 LYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVH 365 (901)
Q Consensus 333 l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~ 365 (901)
.+.++++|+.-+..-|. .++++|-+++||+.|-
T Consensus 112 Ae~vkDAi~Dyi~T~P~PT~~~~Vt~~~Fd~~V~ 145 (146)
T PF02905_consen 112 AECVKDAIRDYIMTRPQPTCNTQVTVCSFDDGVM 145 (146)
T ss_dssp HHHHHHHHHHHHCTS-TTGGGEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCCCCcceEEEEEeCCCCCc
Confidence 45789999999877665 3678999999998774
No 95
>KOG0445|consensus
Probab=37.88 E-value=36 Score=40.43 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=33.5
Q ss_pred ccccccccCeEEEEeCCceEEEEecCCCCh-------HHHhcccCCC
Q psy12437 783 LSAERLQATGTYLLNMPDLIIILVRHGTSP-------AICSGLFGFQ 822 (901)
Q Consensus 783 Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~-------~~~~~lfg~~ 822 (901)
++.+-|.+..+++.|-|..||||.|+.++. .+-+.+||.+
T Consensus 363 pk~~~l~p~eVLvFDFGSEvYVW~Gk~~~~~~~~~A~~lAk~l~~~d 409 (919)
T KOG0445|consen 363 PKCSLLQPKEVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNFD 409 (919)
T ss_pred ccccccCcceEEEEecCceEEEEcCccCchHHHHHHHHHHHHHhCCC
Confidence 456788999999999999999999998654 5777888854
No 96
>KOG3648|consensus
Probab=37.28 E-value=19 Score=42.06 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy12437 651 ACIAGLLAK 659 (901)
Q Consensus 651 ~a~~~~lar 659 (901)
.++++.+-|
T Consensus 590 G~V~sCLYR 598 (1179)
T KOG3648|consen 590 GAVFSCLYR 598 (1179)
T ss_pred chHHHHHHH
Confidence 333333333
No 97
>KOG3648|consensus
Probab=35.36 E-value=25 Score=41.23 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy12437 484 YKKIALEC 491 (901)
Q Consensus 484 Y~~la~~~ 491 (901)
|++--.++
T Consensus 564 Y~~C~~~A 571 (1179)
T KOG3648|consen 564 YRKCQGDA 571 (1179)
T ss_pred HHHHHHHH
Confidence 44433333
No 98
>KOG4368|consensus
Probab=32.30 E-value=1.7e+02 Score=34.44 Aligned_cols=9 Identities=22% Similarity=0.397 Sum_probs=5.0
Q ss_pred ccCCceEEE
Q psy12437 518 KFSSGCIHH 526 (901)
Q Consensus 518 ~~TGG~v~~ 526 (901)
..+||.|+.
T Consensus 714 PiSGGEVRd 722 (757)
T KOG4368|consen 714 PISGGEVRD 722 (757)
T ss_pred cccCccccc
Confidence 345676643
No 99
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=29.44 E-value=18 Score=45.69 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=4.2
Q ss_pred HhcCccccC
Q psy12437 716 LLKHPAFRI 724 (901)
Q Consensus 716 L~ks~~l~~ 724 (901)
|.|-..|+.
T Consensus 692 lsRae~l~~ 700 (808)
T PF09770_consen 692 LSRAELLKQ 700 (808)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 444444443
No 100
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=28.79 E-value=79 Score=33.02 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCCCCcHHHHHHHHHHhhcCC---CCEEEEEecCC
Q psy12437 421 LDSGSALGPALQAAFKLLQPT---GGRITIFQTCL 452 (901)
Q Consensus 421 ~~~~~~~G~AL~~A~~ll~~~---GGrI~~F~~g~ 452 (901)
-..++.+|.||..+...+... +.-|+++++|.
T Consensus 126 ~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~ 160 (222)
T PF05762_consen 126 FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGW 160 (222)
T ss_pred CCCccHHHHHHHHHHHHhhcccccCcEEEEEeccc
Confidence 346788999999998888632 45777777763
No 101
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=26.40 E-value=22 Score=44.93 Aligned_cols=7 Identities=14% Similarity=-0.045 Sum_probs=0.0
Q ss_pred CceEEEE
Q psy12437 799 PDLIIIL 805 (901)
Q Consensus 799 g~~i~i~ 805 (901)
|...|||
T Consensus 741 ~~~~~vw 747 (808)
T PF09770_consen 741 GDDSYVW 747 (808)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3344444
No 102
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=21.16 E-value=5.2e+02 Score=30.55 Aligned_cols=81 Identities=16% Similarity=0.053 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCC-CCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEE
Q psy12437 424 GSALGPALQAAFKLLQP---TGGRITIFQTCLPNR-GPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVD 499 (901)
Q Consensus 424 ~~~~G~AL~~A~~ll~~---~GGrI~~F~~g~pt~-GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvd 499 (901)
.+-.|+||..|..-|-. .--=+|+|++|-||- + ....+. .-.+-| +-..++.+.||.|=
T Consensus 532 ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d--~YEgr~--------------gIeDTr-~AV~eaRk~Gi~VF 594 (637)
T COG4548 532 YTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFD--HYEGRF--------------GIEDTR-EAVIEARKSGIEVF 594 (637)
T ss_pred cccccHHHHHHHHHHhcCcccceEEEEecCCCccccc--cccccc--------------chhhHH-HHHHHHHhcCceEE
Confidence 35589999999886643 224578899998763 1 000000 011122 44557788888643
Q ss_pred EEEecCCccCchhhhhccccCCceEEE
Q psy12437 500 LFILNSQYVDLATLSGVSKFSSGCIHH 526 (901)
Q Consensus 500 lf~~s~~~~~l~~l~~l~~~TGG~v~~ 526 (901)
-+..+ =..+..+..+||-..|.
T Consensus 595 ~Vtld-----~ea~~y~p~~fgqngYa 616 (637)
T COG4548 595 NVTLD-----REAISYLPALFGQNGYA 616 (637)
T ss_pred EEEec-----chhhhhhHHHhccCceE
Confidence 33222 23455666667666653
Done!