Query psy12437
Match_columns 901
No_of_seqs 452 out of 1896
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 19:15:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eh1_A Protein transport prote 100.0 2E-141 6E-146 1276.4 67.0 655 245-901 70-749 (751)
2 3efo_B SEC24 related gene fami 100.0 5E-133 2E-137 1207.6 63.5 624 267-901 119-765 (770)
3 3eh2_A Protein transport prote 100.0 1E-132 3E-137 1204.3 64.2 624 267-901 115-761 (766)
4 1m2v_B SEC24, protein transpor 100.0 6E-131 2E-135 1199.6 60.9 632 267-901 249-924 (926)
5 1pcx_A Protein transport prote 100.0 3E-129 9E-134 1182.5 64.8 632 267-901 133-808 (810)
6 1m2o_A SEC23, protein transpor 100.0 3E-115 1E-119 1056.9 53.1 614 244-901 38-763 (768)
7 2nut_A Protein transport prote 100.0 9E-112 3E-116 1025.4 58.0 613 244-901 47-764 (769)
8 4fx5_A VON willebrand factor t 99.3 9.3E-09 3.2E-13 118.1 36.4 306 313-681 76-409 (464)
9 3ibs_A Conserved hypothetical 98.8 1.9E-07 6.5E-12 96.0 19.3 174 311-548 8-212 (218)
10 1ijb_A VON willebrand factor; 98.4 7.9E-06 2.7E-10 83.0 18.2 162 314-532 13-183 (202)
11 1q0p_A Complement factor B; VO 98.4 8.4E-06 2.9E-10 83.8 17.8 172 311-531 12-206 (223)
12 1atz_A VON willebrand factor; 98.3 9.9E-06 3.4E-10 81.2 16.1 158 313-531 4-171 (189)
13 1shu_X Anthrax toxin receptor 98.3 1.7E-05 5.7E-10 78.7 17.5 158 313-530 5-167 (182)
14 4b4t_W RPN10, 26S proteasome r 98.3 1.8E-06 6.2E-11 90.8 10.6 148 316-522 5-163 (268)
15 1n3y_A Integrin alpha-X; alpha 98.3 5.4E-06 1.9E-10 83.6 13.2 160 313-531 8-180 (198)
16 1v7p_C Integrin alpha-2; snake 98.3 1.7E-05 5.9E-10 80.2 17.0 172 313-548 5-194 (200)
17 1mf7_A Integrin alpha M; cell 98.3 5.3E-06 1.8E-10 83.5 12.7 162 313-532 4-177 (194)
18 3n2n_F Anthrax toxin receptor 98.2 1.3E-05 4.5E-10 79.8 14.9 158 313-531 6-171 (185)
19 4hqo_A Sporozoite surface prot 98.2 5.7E-06 2E-10 87.9 12.9 166 313-531 17-193 (266)
20 4hqf_A Thrombospondin-related 98.2 1.3E-05 4.6E-10 85.8 15.8 166 313-532 20-197 (281)
21 2b2x_A Integrin alpha-1; compu 98.2 2.5E-05 8.4E-10 80.6 17.1 160 313-532 21-199 (223)
22 1pt6_A Integrin alpha-1; cell 98.2 2.2E-05 7.5E-10 80.3 14.8 162 312-532 5-184 (213)
23 2odp_A Complement C2; C3/C5 co 98.1 2.3E-05 7.8E-10 91.4 16.1 170 311-530 6-199 (509)
24 4b8c_D Glucose-repressible alc 98.1 2.3E-07 8E-12 113.0 -1.1 13 723-735 601-613 (727)
25 1rrk_A Complement factor B; BB 98.1 4.1E-05 1.4E-09 88.9 17.5 169 314-531 1-192 (497)
26 2x31_A Magnesium-chelatase 60 98.1 1.9E-07 6.4E-12 93.9 -2.2 176 313-547 4-185 (189)
27 2x5n_A SPRPN10, 26S proteasome 98.1 2.3E-05 7.8E-10 78.9 13.2 142 316-520 4-159 (192)
28 4b8c_D Glucose-repressible alc 98.0 4.5E-07 1.5E-11 110.5 -1.1 11 626-636 547-557 (727)
29 1mjn_A Integrin alpha-L; rossm 98.0 7.4E-05 2.5E-09 74.2 15.1 154 314-532 2-167 (179)
30 3hrz_D Complement factor B; se 97.8 0.00014 4.9E-09 88.7 15.3 181 311-531 240-434 (741)
31 3zqk_A VON willebrand factor; 97.7 0.00059 2E-08 68.8 16.2 153 312-532 19-181 (199)
32 1jey_B KU80; double-strand DNA 97.7 3.6E-05 1.2E-09 90.6 7.8 145 315-505 8-169 (565)
33 2xgg_A Microneme protein 2; A/ 97.7 0.00042 1.4E-08 68.5 13.4 144 313-513 16-168 (178)
34 1kcq_A Gelsolin, brevin, ADF, 97.5 0.00039 1.3E-08 62.4 9.6 88 753-879 2-90 (104)
35 3k6s_A Integrin alpha-X; cell 97.5 0.00021 7.1E-09 90.2 10.0 160 314-532 130-302 (1095)
36 3fg7_A Villin-1; actin binding 97.2 0.00078 2.7E-08 75.2 10.1 109 752-893 281-392 (398)
37 1svq_A Severin; actin-binding; 97.2 0.00061 2.1E-08 62.1 6.9 89 753-879 12-101 (114)
38 2fh1_A Gelsolin; calcium, cont 96.8 0.0031 1.1E-07 69.3 9.3 114 752-897 227-342 (344)
39 1jey_A KU70; double-strand DNA 96.7 0.016 5.3E-07 68.7 15.1 153 315-506 36-208 (609)
40 3fg6_A Adseverin, scinderin; C 96.4 0.0034 1.2E-07 69.5 6.7 56 752-815 268-323 (371)
41 1d0n_A Horse plasma gelsolin; 95.8 0.018 6.3E-07 69.4 9.3 114 750-896 610-726 (729)
42 2ww8_A RRGA, cell WALL surface 95.7 0.017 6E-07 70.8 8.7 146 312-457 222-394 (893)
43 1j72_A Macrophage capping prot 95.6 0.03 1E-06 61.4 9.3 88 752-870 246-335 (347)
44 3t3p_B Integrin beta-3; integr 95.4 3.7 0.00013 46.1 25.6 299 312-635 109-434 (472)
45 3rag_A Uncharacterized protein 95.2 0.041 1.4E-06 56.4 7.9 93 313-439 133-226 (242)
46 3fcs_B Integrin beta-3; beta p 95.0 0.63 2.2E-05 55.3 18.9 267 312-603 109-403 (690)
47 1yvr_A RO autoantigen, 60-kDa 94.8 0.049 1.7E-06 63.5 8.5 108 311-456 365-475 (538)
48 3vi3_B Integrin beta-1; beta p 94.7 1 3.4E-05 50.3 17.9 269 312-603 120-412 (454)
49 1j72_A Macrophage capping prot 94.0 0.15 5.1E-06 55.8 9.5 88 753-879 135-223 (347)
50 3v4v_B Integrin beta-7; cell a 94.0 5.1 0.00017 45.2 21.9 274 312-603 130-426 (503)
51 1d0n_A Horse plasma gelsolin; 92.6 0.27 9.2E-06 59.3 9.5 88 753-879 133-221 (729)
52 3k6s_B Integrin beta-2; cell r 92.5 0.36 1.2E-05 57.3 10.3 203 312-528 102-324 (687)
53 3fg6_A Adseverin, scinderin; C 92.1 0.44 1.5E-05 52.4 9.7 52 753-813 165-217 (371)
54 2fh1_A Gelsolin; calcium, cont 91.2 0.43 1.5E-05 52.1 8.3 53 753-814 124-176 (344)
55 2nvo_A RO sixty-related protei 89.0 1.3 4.5E-05 51.3 10.5 108 311-456 359-471 (535)
56 2iue_A Pactolus I-domain; memb 78.6 6.3 0.00022 39.5 8.7 115 314-462 3-126 (212)
57 3rag_A Uncharacterized protein 74.9 6 0.00021 40.4 7.4 64 441-529 9-76 (242)
58 3fg7_A Villin-1; actin binding 71.7 0.8 2.7E-05 50.9 0.0 34 780-813 196-229 (398)
59 2yrc_A Protein transport prote 67.5 2 6.7E-05 33.7 1.4 19 267-285 32-50 (59)
60 1b3t_A Protein (nuclear protei 45.8 52 0.0018 29.3 6.8 33 333-365 112-145 (147)
No 1
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=1.6e-141 Score=1276.41 Aligned_cols=655 Identities=50% Similarity=0.858 Sum_probs=614.7
Q ss_pred CCCCCCCCCCcccCCCCCCCCC--------------CcCccCcccccCCCCCCC---------CCCCCccccccccEEEE
Q psy12437 245 LLNTRDILPATKVEPPPIRLPQ--------------NLPEIHEQFLYDRNTEMF---------GDPYRRPEIQSATVEYL 301 (901)
Q Consensus 245 pl~e~~~lp~~~~~Pp~~~~~~--------------~~~~~p~~~~~~~~~~~~---------~d~~~rpEL~~~tvEy~ 301 (901)
|+++.+.+|.+.+.+| ++|+. +.|.||+|+..|.++..| +|.+.||||++|||||+
T Consensus 70 Pl~~~~~~P~v~~~~p-~RC~rCrayiNPf~~f~~~~~w~Cn~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~ 148 (751)
T 3eh1_A 70 PFRDLTQLPVITSNTI-VRCRSCRTYINPFVSFIDQRRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFI 148 (751)
T ss_dssp TTCCCSCCCEECCSCC-CBCTTTCCBCCTTCEESSSSEEECTTTCCEEECCGGGC---------CGGGSHHHHCSEEEEE
T ss_pred cCCcCCCCCccCCCCC-CcccCccCEeCCceEEecCCEEEcccccCCCCCCHHHhcccccccccCcccCchhccceEEEE
Confidence 7777667777766654 66652 789999999877665544 57899999999999999
Q ss_pred ecccccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeec
Q psy12437 302 ATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMIL 381 (901)
Q Consensus 302 ~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~ 381 (901)
+|++|+.| +|.||+|+||||||..++++|+++++|++|+++|+.||+++|++|||||||++||||+|+.++++++|+|+
T Consensus 149 ~p~~y~~r-~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv 227 (751)
T 3eh1_A 149 ASSDYMLR-PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIV 227 (751)
T ss_dssp ECGGGCSS-SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEE
T ss_pred cChhhhcC-CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeecc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred cCccccCCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCccc
Q psy12437 382 TDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQ 461 (901)
Q Consensus 382 ~dl~d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~ 461 (901)
+|++|+|+|.|++||++++||++.|+++|++|+.+|..++++.+|+|+||++|..+|+..||||++|++|+||.|||+|+
T Consensus 228 ~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~ 307 (751)
T 3eh1_A 228 SDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQ 307 (751)
T ss_dssp SCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTTCEEEEEEECSCCCSSTTCCC
T ss_pred ccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcCCCEEEEEecCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-CCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCC-CcchhHH
Q psy12437 462 SRENPNQRSN-DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG-KNMSHVY 539 (901)
Q Consensus 462 ~~~~~~~~~~-~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~-~~~~~~~ 539 (901)
.|++++.++| ||+++++++++||++||++|+++||+||+|+++.+++|++||+.+++.|||.+++|++|+. .+..+.+
T Consensus 308 ~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~ 387 (751)
T 3eh1_A 308 SREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAE 387 (751)
T ss_dssp CCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHH
T ss_pred cccccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHH
Confidence 9988875554 6678999999999999999999999999999999999999999999999999999999994 3445678
Q ss_pred HHHHHHHHhhhcccccceeEEEEecCCceEEEEecceeccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEe
Q psy12437 540 QLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLY 619 (901)
Q Consensus 540 ~~~~dl~~~l~~~~g~~a~l~vr~S~gl~i~~~~G~~~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allY 619 (901)
+|.+||.+.+++++||+|+||||||+||+|+++||||+.++++.|+++++++|++|+|+|++++++.+...+|||+|++|
T Consensus 388 ~f~~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allY 467 (751)
T 3eh1_A 388 KLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLY 467 (751)
T ss_dssp HHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEE
T ss_pred HHHHHHHHHHhhhhccceEEEEEecCCeEEEEeeCCeEeCCCCceEeccCCCCCEEEEEEEEcCCCCCCCceEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999877788999999999
Q ss_pred eecCCCeEEEEEecccccccCHHHHHhccCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy12437 620 TSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGS 699 (901)
Q Consensus 620 t~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~~ 699 (901)
|+.+|+|||||||+++++++++.++|+++|+||++++|||+|+++++++++.|+|+||+++|+++|++||+++..+.+++
T Consensus 468 T~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~~~~~ 547 (751)
T 3eh1_A 468 TSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNLQHSA 547 (751)
T ss_dssp ECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC-----C
T ss_pred ecCCCCEEEEEEEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875444447
Q ss_pred cccCcccCcHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCc
Q psy12437 700 LLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPR 779 (901)
Q Consensus 700 l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~ 779 (901)
|+||++||+||+||++|+||++|+.+.++++|||+|+|+.++++++.+++.||||+||+||++.++++..++++.+++|+
T Consensus 548 l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~ 627 (751)
T 3eh1_A 548 LMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPP 627 (751)
T ss_dssp CEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCC
T ss_pred ccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCCCHHHHHhhccceEEEeecCccccCcccCCCccCCCC
Confidence 99999999999999999999999987789999999999999999999999999999999999988776656666678999
Q ss_pred cccccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCc
Q psy12437 780 ILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYV 859 (901)
Q Consensus 780 ~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~ 859 (901)
.++||.++|++|||||||+|+.||||+|++++++++++|||++++.+++..+.+||++||+.|+++|++|+++|+.|.++
T Consensus 628 ~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~ 707 (751)
T 3eh1_A 628 LQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLS 707 (751)
T ss_dssp CBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSSC
T ss_pred cccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccEEEEeCCCccHHHHHHHhcccCCCCCCCHHHHHHHHHHhC
Q psy12437 860 SPVKVIKDSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901 (901)
Q Consensus 860 ~p~~iv~~~~~~~~~f~~~LvED~~~~~~Sy~~fl~~lh~~i 901 (901)
+.++||+++++.|.+|.++||||++++.+||+|||++|||+|
T Consensus 708 ~~l~vvr~~~~~~~~f~~~LvED~~~~~~SY~~fL~~~h~~i 749 (751)
T 3eh1_A 708 PILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 749 (751)
T ss_dssp CEEEEEESSSSSHHHHHTTCTTSCBTTBCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCCchHHHHHHhCcccCCCCCCCHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999986
No 2
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=5e-133 Score=1207.60 Aligned_cols=624 Identities=27% Similarity=0.516 Sum_probs=586.6
Q ss_pred CcCccCcccccCCCCCCC----------CCCCCccccccccEEEEeccccc--CCCCCCCcEEEEEEEcchhHHhhchHH
Q psy12437 267 NLPEIHEQFLYDRNTEMF----------GDPYRRPEIQSATVEYLATADYT--VRDPPQPAMYLFLLDVSQIAAQSGYLY 334 (901)
Q Consensus 267 ~~~~~p~~~~~~~~~~~~----------~d~~~rpEL~~~tvEy~~p~~y~--~r~~~~pp~~vFvID~s~~a~~~g~l~ 334 (901)
+.|.||+|+..|.++..| .|.++||||++|||||++|.||+ .| +|.||+|+||||||..++++|+++
T Consensus 119 ~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~-~p~pp~y~FvIDvs~~av~sg~l~ 197 (770)
T 3efo_B 119 RRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSK-PPNPPAFIFMIDVSYSNIKNGLVK 197 (770)
T ss_dssp TEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGS-CCCCCEEEEEEECSHHHHHTTHHH
T ss_pred CEEEeccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCC-CCCCcEEEEEEEcchhhccchHHH
Confidence 789999999877655444 46789999999999999999998 46 899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC-----CceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcccchhhhHHHHHHH
Q psy12437 335 TVCEVLLNQLKSMPGDR-----RTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDL 409 (901)
Q Consensus 335 ~~~~si~~~L~~lp~~~-----~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~lv~l~e~~~~i~~l 409 (901)
++|++|+++|+.||+++ |++|||||||++||||+|+.+.++++|+|++|++|+|+|++++||++++||++.|+++
T Consensus 198 ~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~d~f~P~~~~~Lv~l~e~~~~i~~l 277 (770)
T 3efo_B 198 LICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIHNL 277 (770)
T ss_dssp HHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTSCCCCCSSSSSBCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccccccCCCccceeeeHHHHHHHHHHH
Confidence 99999999999999753 6899999999999999999988899999999999999999999999999999999999
Q ss_pred HHhCCccccCCCCCCCcHHHHHHHHHHhhcC--CCCEEEEEecCCCC-CCCCcccCCCCCCCC-CCCCCCCCCchHHHHH
Q psy12437 410 LKQLPGKFKDSLDSGSALGPALQAAFKLLQP--TGGRITIFQTCLPN-RGPGALQSRENPNQR-SNDDPPHMNPATDFYK 485 (901)
Q Consensus 410 L~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~--~GGrI~~F~~g~pt-~GpG~l~~~~~~~~~-~~~~~~~~~~a~~fY~ 485 (901)
|++|+++|...+.+.+|+|+||.+|+.+++. .||||++|++|.|+ .|||+|+.|+++... ++||+++++++++||+
T Consensus 278 L~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~ 357 (770)
T 3efo_B 278 LDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYD 357 (770)
T ss_dssp HHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHH
T ss_pred HHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCccccccccccccCCcchhhhhcchHHHHH
Confidence 9999999988888899999999999999974 89999999999666 899999999877654 5677889999999999
Q ss_pred HHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhcccccceeEEEEecC
Q psy12437 486 KIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTK 565 (901)
Q Consensus 486 ~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~S~ 565 (901)
+||++|+++||+||||+++.+++|+++|+.|++.|||.+++|++|+. ..+.++|.+||.+.+++++||+|+||||||+
T Consensus 358 ~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~--~~~~~~f~~dl~~~l~~~~gf~a~mrVR~S~ 435 (770)
T 3efo_B 358 SLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQM--HLDRQQFLNDLRNDIEKKIGFDAIMRVRTST 435 (770)
T ss_dssp HHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCH--HHHHHHHHHHHHHHHHSCEEEEEEEEEEECT
T ss_pred HHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcc--hhHHHHHHHHHHHhhhhceeeeEEEEEEecC
Confidence 99999999999999999999999999999999999999999999996 4688999999999999999999999999999
Q ss_pred CceEEEEecceeccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHH
Q psy12437 566 GMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVL 645 (901)
Q Consensus 566 gl~i~~~~G~~~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~ 645 (901)
||+|+++|||++.+++++|+++++++|++|+|+|++++++.+...+|||+|++||+.+|+|||||||++++|++++.++|
T Consensus 436 gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~ 515 (770)
T 3efo_B 436 GFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLY 515 (770)
T ss_dssp TEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCCBTTTBEEEEEEEEEECTTCCEEEEEEEEEEEEESCHHHHH
T ss_pred CeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCCCCCCcEEEEEEEEEEcCCCCEEEEEEEechhhcccHHHHH
Confidence 99999999999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CccccCcccCcHHHHHHHHhcCccccC
Q psy12437 646 VGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLT-GSLLAPSSLKVLPLYVLALLKHPAFRI 724 (901)
Q Consensus 646 ~~~D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~-~~l~lp~~l~~lP~~~~~L~ks~~l~~ 724 (901)
+++|+||++++|||+|++++++++++++|+.|.++|++++..||++|+...+ ++|+||++||+||+||++|+||++|+.
T Consensus 516 ~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~ 595 (770)
T 3efo_B 516 KSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLS 595 (770)
T ss_dssp HTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSC
T ss_pred HhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcC
Confidence 9999999999999999999999999999999999999999999999865443 459999999999999999999999998
Q ss_pred CCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEE
Q psy12437 725 GQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIII 804 (901)
Q Consensus 725 ~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i 804 (901)
+.++++|||+|+++.++++++.+++.||||+||+||++..+. ...|..++||.++|++|||||||+|+.|+|
T Consensus 596 ~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~--------~~~P~~v~ls~~~l~~~giyLLD~g~~i~l 667 (770)
T 3efo_B 596 RPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKS--------TMLPAAVRCSESRLSEEGIFLLANGLHMFL 667 (770)
T ss_dssp SSSSCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCCSSS--------CSCCCCCCSSGGGCCTTCEEEEECSSEEEE
T ss_pred CCCCCccHHHHHHHHHHCCCHHHHHHhhccceEEEecccccc--------ccCCCCcCCcHHHcCCCcEEEEECCcEEEE
Confidence 778999999999999999999999999999999999875432 135667899999999999999999999999
Q ss_pred EecCCCChHHHhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCccHHHHHHHhcccCC
Q psy12437 805 LVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLIEDKN 884 (901)
Q Consensus 805 ~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~LvED~~ 884 (901)
|+|+++++|++++|||++++.+++..+.+||++|++.|+++|+||+.||+.|..++|++|||++++.|.+|.++||||++
T Consensus 668 w~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~ 747 (770)
T 3efo_B 668 WLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKG 747 (770)
T ss_dssp EECTTCCHHHHHHHHSSSSGGGCCTTCCSCCCCCSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC
T ss_pred EecCCCCHHHHHHhcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCChHHHHHHhCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred -CCCCCHHHHHHHHHHhC
Q psy12437 885 -AGGMAYYEFLLRIREQV 901 (901)
Q Consensus 885 -~~~~Sy~~fl~~lh~~i 901 (901)
++.+||+|||+||||+|
T Consensus 748 ~~~~~SY~dfL~~lh~~i 765 (770)
T 3efo_B 748 LYGGSSYVDFLCCVHKEI 765 (770)
T ss_dssp ---CCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 78899999999999986
No 3
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=1e-132 Score=1204.27 Aligned_cols=624 Identities=27% Similarity=0.504 Sum_probs=584.7
Q ss_pred CcCccCcccccCCCCCCC----------CCCCCccccccccEEEEecccccC--CCCCCCcEEEEEEEcchhHHhhchHH
Q psy12437 267 NLPEIHEQFLYDRNTEMF----------GDPYRRPEIQSATVEYLATADYTV--RDPPQPAMYLFLLDVSQIAAQSGYLY 334 (901)
Q Consensus 267 ~~~~~p~~~~~~~~~~~~----------~d~~~rpEL~~~tvEy~~p~~y~~--r~~~~pp~~vFvID~s~~a~~~g~l~ 334 (901)
+.|.||+|+..|.++..| .|.++||||..|+|||++|.||+. | +|.||+|+||||||..++++|+++
T Consensus 115 ~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~-~p~pp~y~FvIDvs~~av~sg~l~ 193 (766)
T 3eh2_A 115 RRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNK-FPSPPAFIFMIDVSYNAIRTGLVR 193 (766)
T ss_dssp TEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGS-CCCCCEEEEEEECSHHHHHTTHHH
T ss_pred CEEEeccccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCC-CCCCCEEEEEEECchhhccchHHH
Confidence 789999999888665554 478999999999999999999986 6 899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC-----CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcccchhhhHHHHHHH
Q psy12437 335 TVCEVLLNQLKSMPGD-----RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDL 409 (901)
Q Consensus 335 ~~~~si~~~L~~lp~~-----~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~lv~l~e~~~~i~~l 409 (901)
++|++|+++|+.||++ ++++|||||||++||||+|+.++++++|+|++|++|+|+|++++||++++||++.|+++
T Consensus 194 ~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~lv~l~e~~~~i~~l 273 (766)
T 3eh2_A 194 LLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVNVNESRAVITSL 273 (766)
T ss_dssp HHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTTCCCCCCTTSSBCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChhhhccccccceeEeHHHHHHHHHHH
Confidence 9999999999999976 35899999999999999999888899999999999999999999999999999999999
Q ss_pred HHhCCccccCCCCCCCcHHHHHHHHHHhhcC--CCCEEEEEecCCCC-CCCCcccCCCCCCCC-CCCCCCCCCchHHHHH
Q psy12437 410 LKQLPGKFKDSLDSGSALGPALQAAFKLLQP--TGGRITIFQTCLPN-RGPGALQSRENPNQR-SNDDPPHMNPATDFYK 485 (901)
Q Consensus 410 L~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~--~GGrI~~F~~g~pt-~GpG~l~~~~~~~~~-~~~~~~~~~~a~~fY~ 485 (901)
|++|+.+|.+...+.+|+|+||.+|+.+++. .||||++|++|+|+ .|||+|+.|+++... ++||+++++++++||+
T Consensus 274 L~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~ 353 (766)
T 3eh2_A 274 LDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQ 353 (766)
T ss_dssp HHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCCEEEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHH
T ss_pred HHhhhhhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCcccccccccccCCCcchhhhccchHHHHH
Confidence 9999999988888899999999999999974 79999999999776 899999999876543 5577789999999999
Q ss_pred HHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhcccccceeEEEEecC
Q psy12437 486 KIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTK 565 (901)
Q Consensus 486 ~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~S~ 565 (901)
+||++|+++||+||||+++.+++|++||+.|++.|||.+++|++|+. ..|.++|.+||.+.+++++||+|+||||||+
T Consensus 354 ~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~--~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~ 431 (766)
T 3eh2_A 354 TLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQV--ENDQERFLSDLRRDVQKVVGFDAVMRVRTST 431 (766)
T ss_dssp HHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCH--HHHHHHHHHHHHHHHHSCEEEEEEEEEEECT
T ss_pred HHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcc--hhHHHHHHHHHHHHhhhcceeeEEEEEEecC
Confidence 99999999999999999999999999999999999999999999996 4678999999999999999999999999999
Q ss_pred CceEEEEecceeccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHH
Q psy12437 566 GMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVL 645 (901)
Q Consensus 566 gl~i~~~~G~~~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~ 645 (901)
||+|+++|||++.+++++|+++++++|++|+|+|++++++.+...+|||+|++||+.+|+|||||||++++|++++.++|
T Consensus 432 glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~ 511 (766)
T 3eh2_A 432 GIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLY 511 (766)
T ss_dssp TEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCCCTTTCEEEEEEEEEECTTSCEEEEEEEEEEEEESSHHHHH
T ss_pred CeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCCCCCCcEEEEEEEEeEcCCCCEEEEEEEEeeEecCCHHHHH
Confidence 99999999999999999999999999999999999999987778999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CccccCcccCcHHHHHHHHhcCccccC
Q psy12437 646 VGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLT-GSLLAPSSLKVLPLYVLALLKHPAFRI 724 (901)
Q Consensus 646 ~~~D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~-~~l~lp~~l~~lP~~~~~L~ks~~l~~ 724 (901)
+++|+||++++|||+|+++++++++.++|++|+++|+++++.||++|+...+ ++|+||++||+||+||++|+||++|+.
T Consensus 512 ~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk~~~~~~s~~ql~lp~~lkllP~~~~~L~Ks~~l~~ 591 (766)
T 3eh2_A 512 RNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQP 591 (766)
T ss_dssp HTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCGGGTTHHHHHHHHHTSTTTSC
T ss_pred HhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccceecCHHHHHHHHHHHHHHccHhhcC
Confidence 9999999999999999999999999999999999999999999999864433 359999999999999999999999998
Q ss_pred CCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEE
Q psy12437 725 GQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIII 804 (901)
Q Consensus 725 ~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i 804 (901)
+.++++|||+|+++.++++++.+++.||||+||++|++..+. ...|+.++||.++|.+|||||||+|+.|+|
T Consensus 592 ~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~--------~~~P~~v~ls~~~l~~~giyLlD~g~~i~l 663 (766)
T 3eh2_A 592 GAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVES--------TTEPPAVRASEERLSNGDIYLLENGLNLFL 663 (766)
T ss_dssp CTTCCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCCCSC--------C--CCCBCSSGGGCCTTCEEEEECSSEEEE
T ss_pred CCCCCccHHHHHHHHHHCCCHHHHHHHHhheEEEeecCCccc--------ccCCCCcCCcHHHcCCCcEEEEEcCcEEEE
Confidence 778999999999999999999999999999999999875442 235667899999999999999999999999
Q ss_pred EecCCCChHHHhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCccHHHHHHHhcccCC
Q psy12437 805 LVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLIEDKN 884 (901)
Q Consensus 805 ~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~LvED~~ 884 (901)
|+|++++++++++|||++++.+++..+.+||++|++.|+++|+||+.||+.|..++|++|||++++.|.+|.++||||++
T Consensus 664 w~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~ 743 (766)
T 3eh2_A 664 WVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKS 743 (766)
T ss_dssp EECTTCCHHHHHHHHSCSSGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCC
T ss_pred EecCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHHHhCcccCC
Confidence 99999999999999999999999998899999999999999999999999999999999999998899999999999998
Q ss_pred CC-CCCHHHHHHHHHHhC
Q psy12437 885 AG-GMAYYEFLLRIREQV 901 (901)
Q Consensus 885 ~~-~~Sy~~fl~~lh~~i 901 (901)
.+ .+||+|||++|||+|
T Consensus 744 ~~~~~SY~dfL~~lh~~i 761 (766)
T 3eh2_A 744 LSGGASYVDFLCHMHKEI 761 (766)
T ss_dssp TTTCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 75 899999999999986
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=6.3e-131 Score=1199.60 Aligned_cols=632 Identities=31% Similarity=0.547 Sum_probs=556.7
Q ss_pred CcCccCcccccCCCCCCC--------CCCCCccccccccEEEEecccccCCCCCCCcEEEEEEEcchhHHhhchHHHHHH
Q psy12437 267 NLPEIHEQFLYDRNTEMF--------GDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCE 338 (901)
Q Consensus 267 ~~~~~p~~~~~~~~~~~~--------~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~ 338 (901)
+.|.|++|+..|.++..| .|+..||||+++||||++|++|+.| ++.||+||||||+|..++++|+++++|+
T Consensus 249 ~~W~CnfC~~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r-~p~ppvyvFvIDvS~~av~~g~l~~l~~ 327 (926)
T 1m2v_B 249 RRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR-QPPPATYCFLIDVSQSSIKSGLLATTIN 327 (926)
T ss_dssp TEEECTTTCCEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSS-CCCCCBEEEEEECSHHHHHSCHHHHHHH
T ss_pred CEEEccCCCCCCCCchhhccccccCccccccCccccCceEEEEcChhhccC-CCCCcEEEEEEECCHHHHhhhHHHHHHH
Confidence 689999999888665544 4678889999999999999999998 8999999999999999999999999999
Q ss_pred HHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCC-------CCceeeccCccccCCCCCCCcccchhhhHHHHHHHH
Q psy12437 339 VLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQT-------QPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLL 410 (901)
Q Consensus 339 si~~~L~~lp~~-~~~~VglItfd~~V~~y~l~~~~~-------~~~~~v~~dl~d~f~p~~~~~lv~l~e~~~~i~~lL 410 (901)
+|+++|+.||++ .+++|||||||+.||||+++.+.. +++|++++|++|+|+|.+++||++++||++.|+++|
T Consensus 328 sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lL 407 (926)
T 1m2v_B 328 TLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLL 407 (926)
T ss_dssp HHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhccccccccccCCCcccccccHHHHHHHHHHHH
Confidence 999999999974 578999999999999999998654 689999999999999999999999999999999999
Q ss_pred HhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCC-CCCCC-CCCchHHHHHHHH
Q psy12437 411 KQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRS-NDDPP-HMNPATDFYKKIA 488 (901)
Q Consensus 411 ~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~-~~~~~-~~~~a~~fY~~la 488 (901)
++|+.+|..++++.||+|+||++|..+|+..||||++|++|+||.|||+|+.|++..... .||.. +++++.+||++||
T Consensus 408 e~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~GGrI~~F~sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA 487 (926)
T 1m2v_B 408 TKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFT 487 (926)
T ss_dssp HHHHHHTSSCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHH
T ss_pred HhhhhhhcCCCCCCccHHHHHHHHHHHHHhhCCEEEEEecCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765432 24444 8999999999999
Q ss_pred HHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhcccccceeEEEEecCCce
Q psy12437 489 LECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMS 568 (901)
Q Consensus 489 ~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~S~gl~ 568 (901)
++|+++||+||||+++.+++|+++|+.||+.|||.+++|++|+.....+..+|.+|+.+.+++++||+|+||||||+||+
T Consensus 488 ~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glk 567 (926)
T 1m2v_B 488 IDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLR 567 (926)
T ss_dssp HHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEE
T ss_pred HHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhHHHHHHHHHHHHhhhhhceeEEEEEEeCCCcE
Confidence 99999999999999999999999999999999999999999997545677889999999999999999999999999999
Q ss_pred EEEEecceeccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhcc
Q psy12437 569 IHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGA 648 (901)
Q Consensus 569 i~~~~G~~~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~ 648 (901)
|+++||||+.+++++|+++++++|+||+|+|++++++. .+.+|||||++||+.+|+|||||||++++|++++.++|+++
T Consensus 568 v~~~~G~~~~~~s~~~~l~~l~~d~s~av~f~~~~~l~-~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~~s~ 646 (926)
T 1m2v_B 568 MSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASA 646 (926)
T ss_dssp EEEEESSSBCSSTTEEEEEEECSSCCEEEEEEECSBCC-SSEEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHHHTB
T ss_pred EEEeecCccccCcCceEeeccCCCCEEEEEEEeccCCC-CCcEEEEEEEEEEcCCCCEEEEEEeecccccCCHHHHHHhc
Confidence 99999999999999999999999999999999999886 57899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---ccccCcccCcHHHHHHHHhcCccccCC
Q psy12437 649 DQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG---SLLAPSSLKVLPLYVLALLKHPAFRIG 725 (901)
Q Consensus 649 D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~---~l~lp~~l~~lP~~~~~L~ks~~l~~~ 725 (901)
|+||++++|||+++++++++++.|+|+||+++|+++|+.||+.|...... +|+||++||+||+|||+|+||++|+ +
T Consensus 647 Dqea~~~llar~av~~~~~~~~~d~r~~L~~~li~il~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~ 725 (926)
T 1m2v_B 647 DQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-S 725 (926)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-S
T ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhhC-C
Confidence 99999999999999999999999999999999999999999998764432 4999999999999999999999999 5
Q ss_pred CCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcc------cCCCccccCccccccccccccCeEEEEeCC
Q psy12437 726 QSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIE------WNELQVPIPRILQLSAERLQATGTYLLNMP 799 (901)
Q Consensus 726 ~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~------~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g 799 (901)
.+++.|||+|++++++++++..++.||||+||+||++.++.+.. .+++++.+|+.++||.+.|+++|+||||+|
T Consensus 726 ~~~p~Dera~~~~~l~~~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G 805 (926)
T 1m2v_B 726 GIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNG 805 (926)
T ss_dssp SCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECS
T ss_pred CCCCccHHHHHHHHHHcCCHHHHHHhccCeEEEeccCcccccccccccccccccccccCCcccCcHHHhccCCEEEEECC
Confidence 35555999999999999999999999999999999986665432 345567889999999999999999999999
Q ss_pred ceEEEEecCCCChHHHhcccCCCCcCCCCcccccCCCC-chHHHHHHHHHHHHHhhcCC--CcccEEEEeCCCc------
Q psy12437 800 DLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQL-ETQLSLKLNSFISYLNDDKA--YVSPVKVIKDSSP------ 870 (901)
Q Consensus 800 ~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~-d~~~s~~~~~~i~~l~~~r~--~~~p~~iv~~~~~------ 870 (901)
..|++|+|++++++++++|||++++.+++....+||++ |++++++||+||+.||+.|. ++++++|||+++.
T Consensus 806 ~~i~lWvG~~~~p~ll~dlFg~~~~~~i~~~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~ 885 (926)
T 1m2v_B 806 NELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNH 885 (926)
T ss_dssp SEEEEEECTTCCSGGGC-------------------------CHHHHHHHHHHTTCCSSCCCCCEEEEEC----------
T ss_pred CEEEEEecCCCCHHHHHHHhCCCchhhcCcccccCccCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCcccc
Confidence 99999999999999999999999999999888999999 99999999999999999875 5678999986433
Q ss_pred --------cHHHHHHHhcccCCCCCCCHHHHHHHHHHhC
Q psy12437 871 --------DRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901 (901)
Q Consensus 871 --------~~~~f~~~LvED~~~~~~Sy~~fl~~lh~~i 901 (901)
.+.+|.++||||++++.+||+|||++|||+|
T Consensus 886 ~~~~~~~~~~~~f~~~LvED~~~~~~SY~dfL~~lh~~i 924 (926)
T 1m2v_B 886 ASAREVATLRLWASSTLVEDKILNNESYREFLQIMKARI 924 (926)
T ss_dssp --CCHHHHHHHHHHHTCTTSSCTTCCCHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHhCeecCCCCCCCHHHHHHHHHHHh
Confidence 3567889999999999999999999999986
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=2.7e-129 Score=1182.53 Aligned_cols=632 Identities=31% Similarity=0.548 Sum_probs=565.8
Q ss_pred CcCccCcccccCCCCCCC--------CCCCCccccccccEEEEecccccCCCCCCCcEEEEEEEcchhHHhhchHHHHHH
Q psy12437 267 NLPEIHEQFLYDRNTEMF--------GDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCE 338 (901)
Q Consensus 267 ~~~~~p~~~~~~~~~~~~--------~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~ 338 (901)
+.|.|++|+..|.++..| .|+..||||+++||||++|++|+.| ++.||+||||||+|..++++|+++++|+
T Consensus 133 ~~W~C~~C~~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~-~p~pp~yvFvIDvs~~av~~g~l~~~~~ 211 (810)
T 1pcx_A 133 RRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR-QPPPATYCFLIDVSQSSIKSGLLATTIN 211 (810)
T ss_dssp TEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSS-CCCCCEEEEEEECSHHHHHHTHHHHHHH
T ss_pred CEEEccCCCCcCCCchhhccccccCccccccCccccCceEEEEcCchhccC-CCCCcEEEEEEECChHHHhhhHHHHHHH
Confidence 689999999888665443 4788899999999999999999998 8999999999999999999999999999
Q ss_pred HHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCC-------CCceeeccCccccCCCCCCCcccchhhhHHHHHHHH
Q psy12437 339 VLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQT-------QPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLL 410 (901)
Q Consensus 339 si~~~L~~lp~~-~~~~VglItfd~~V~~y~l~~~~~-------~~~~~v~~dl~d~f~p~~~~~lv~l~e~~~~i~~lL 410 (901)
+|+++|+.||++ ++++|||||||+.||||+++.+.. +++|++++|++|+|+|.+++||++++||++.|+++|
T Consensus 212 si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL 291 (810)
T 1pcx_A 212 TLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLL 291 (810)
T ss_dssp HHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccccccccCCCcccccccHHHHHHHHHHHH
Confidence 999999999974 478999999999999999987654 689999999999999999999999999999999999
Q ss_pred HhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCC-CCCCCC-CCCchHHHHHHHH
Q psy12437 411 KQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQR-SNDDPP-HMNPATDFYKKIA 488 (901)
Q Consensus 411 ~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~-~~~~~~-~~~~a~~fY~~la 488 (901)
++|+.+|..++++.||+|+||++|..+|+..||||++|++|+||.|||+|+.|++.... ..||.. +++++.+||++||
T Consensus 292 ~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la 371 (810)
T 1pcx_A 292 TKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFT 371 (810)
T ss_dssp HHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC--------------------CCHHHHHH
T ss_pred HhhhhhccCCCCCCccHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876543 235554 9999999999999
Q ss_pred HHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhcccccceeEEEEecCCce
Q psy12437 489 LECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMS 568 (901)
Q Consensus 489 ~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~S~gl~ 568 (901)
++|+++||+||||+++.+++|+++|+.|++.|||.+++|++|+.....+..+|.+|+.+.+++++||+|+||||||+||+
T Consensus 372 ~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~ 451 (810)
T 1pcx_A 372 IDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLR 451 (810)
T ss_dssp HHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEE
T ss_pred HHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeE
Confidence 99999999999999999999999999999999999999999997545577889999999999999999999999999999
Q ss_pred EEEEecceeccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhcc
Q psy12437 569 IHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGA 648 (901)
Q Consensus 569 i~~~~G~~~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~ 648 (901)
|+++||||+.+++++|+++++++|++|+|+|++++++. .+.+|||||++||+.+|+|||||||++++|++++.++|+++
T Consensus 452 v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l~-~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~v~~~~ 530 (810)
T 1pcx_A 452 MSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASA 530 (810)
T ss_dssp EEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCCC-SSEEEEEEEEEEECTTSCEEEEEEEEEEEEESCHHHHHHTB
T ss_pred EEEeecCccccCcCceEeecCCCCCEEEEEEEeccCCC-CCcEEEEEEEEEEcCCCCEEEEEEecCccccCCHHHHHHhc
Confidence 99999999999999999999999999999999999886 57899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---ccccCcccCcHHHHHHHHhcCccccCC
Q psy12437 649 DQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG---SLLAPSSLKVLPLYVLALLKHPAFRIG 725 (901)
Q Consensus 649 D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~---~l~lp~~l~~lP~~~~~L~ks~~l~~~ 725 (901)
|+||++++|||+|+++++++++.|+|+||+++|+++++.||++|...... +|+||++||+||+|||+|+||++|+ +
T Consensus 531 Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~-~ 609 (810)
T 1pcx_A 531 DQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-S 609 (810)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTC-S
T ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhcC-C
Confidence 99999999999999999999999999999999999999999998754432 4999999999999999999999999 5
Q ss_pred CCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcc------cCCCccccCccccccccccccCeEEEEeCC
Q psy12437 726 QSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIE------WNELQVPIPRILQLSAERLQATGTYLLNMP 799 (901)
Q Consensus 726 ~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~------~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g 799 (901)
.+.+.|||+|++++++++++..++.||||+||+||++.++.+.. .+++++.+|+.++||.+.|+++|+||||+|
T Consensus 610 ~~~p~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G 689 (810)
T 1pcx_A 610 GIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNG 689 (810)
T ss_dssp SCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECS
T ss_pred CCCCccHHHHHHHHHHcCCHHHHHHhccCEEEEeccCcccccccccccccccccccccCCcccCCHHHhCcCCEEEEECC
Confidence 35555999999999999999999999999999999886665432 345667889999999999999999999999
Q ss_pred ceEEEEecCCCChHHHhcccCCCCcCCCCcccccCCCC-chHHHHHHHHHHHHHhhcCC--CcccEEEEeCCCc------
Q psy12437 800 DLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQL-ETQLSLKLNSFISYLNDDKA--YVSPVKVIKDSSP------ 870 (901)
Q Consensus 800 ~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~-d~~~s~~~~~~i~~l~~~r~--~~~p~~iv~~~~~------ 870 (901)
..|++|+|++++++++++|||++++.+++....++|++ |++.++++|+||+.||+.|. ++++++|||+++.
T Consensus 690 ~~i~lwvg~~~~~~l~~~lFg~~~~~~~~~~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~ 769 (810)
T 1pcx_A 690 NELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNH 769 (810)
T ss_dssp SEEEEEECTTCCHHHHHHHHSCSCGGGSCCEECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEEEEEECCCTTCCCCH
T ss_pred CEEEEEeCCCCCHHHHHHHhCCCchhhcCcccccCCcCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCcccc
Confidence 99999999999999999999999999999988999999 99999999999999999875 5678999986543
Q ss_pred --------cHHHHHHHhcccCCCCCCCHHHHHHHHHHhC
Q psy12437 871 --------DRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901 (901)
Q Consensus 871 --------~~~~f~~~LvED~~~~~~Sy~~fl~~lh~~i 901 (901)
.+.+|.++||||++++.+||+|||++|||+|
T Consensus 770 ~~~~~~~~~~~~f~~~LvED~~~~~~SY~~fL~~lh~~i 808 (810)
T 1pcx_A 770 ASAREVATLRLWASSTLVEDKILNNESYREFLQIMKARI 808 (810)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCBTTBCCHHHHHHHHHHHT
T ss_pred ccccchhhHHHHHHHhCeecCCCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999999987
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=3e-115 Score=1056.95 Aligned_cols=614 Identities=19% Similarity=0.255 Sum_probs=530.0
Q ss_pred cCCCCCCCCCCcccCCCCCC----CCC------------CcCccCcccccCCCCCCCC---CCCCccccccccEEEEecc
Q psy12437 244 DLLNTRDILPATKVEPPPIR----LPQ------------NLPEIHEQFLYDRNTEMFG---DPYRRPEIQSATVEYLATA 304 (901)
Q Consensus 244 ~pl~e~~~lp~~~~~Pp~~~----~~~------------~~~~~p~~~~~~~~~~~~~---d~~~rpEL~~~tvEy~~p~ 304 (901)
.|+++.+.+|.+.+.| +.| |++ +.|.|++|+..|.++..|. +.+.||||+++||||++|+
T Consensus 38 ~P~~~~~~~p~v~~~p-vRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N~~P~~y~~~~~~~~~pEL~~~tvEy~~p~ 116 (768)
T 1m2o_A 38 TPLKEYDELNVAPYNP-VVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNK 116 (768)
T ss_dssp CTTCCCTTCCEECSCC-CBCCSTTTCCBCCTTSCEETTTTEECCTTTCCCCBCCGGGCC---CCCCGGGTCSEEEEECSC
T ss_pred EeCCCCCCCCcCCCCC-CccCCCCCCeEECCceEEeCCCCEEEcccCCCCCCCChHHccCCcccCChhhccCCEEEECCC
Confidence 3788777788888876 344 432 6899999999999888885 4578999999999999996
Q ss_pred cccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCC-----------
Q psy12437 305 DYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQ----------- 373 (901)
Q Consensus 305 ~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~----------- 373 (901)
+ ++.||+|+||||+|..+++ ++++|++|+.+|+.||+++ +|||||||+.||||+++.+.
T Consensus 117 ----~-~~~pp~~vFvIDvs~~~~~---l~~l~~sl~~~L~~Lp~~~--~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k 186 (768)
T 1m2o_A 117 ----P-VTVPPIFFFVVDLTSETEN---LDSLKESIITSLSLLPPNA--LIGLITYGNVVQLHDLSSETIDRCNVFRGDR 186 (768)
T ss_dssp ----C-CCSCCEEEEEEECCSCHHH---HHHHHHHHHHHHHTSCTTC--EEEEEEESSEEEECCCSSSSSEEEEEEETTS
T ss_pred ----C-CCCCCEEEEEEECCcCHHH---HHHHHHHHHHHHHhCCCCC--EEEEEEECCEEEEEECCCCCCcceeeecCCc
Confidence 4 7899999999999999876 8999999999999999876 99999999999999999764
Q ss_pred ----CCCceee--ccC-----c-----cccCCCC---CCCcccchhhhHHHHHHHHHhCCc---cccCCCCCCCcHHHHH
Q psy12437 374 ----TQPSQMI--LTD-----I-----DDIFLPS---PENILVNLSECYDMIVDLLKQLPG---KFKDSLDSGSALGPAL 431 (901)
Q Consensus 374 ----~~~~~~v--~~d-----l-----~d~f~p~---~~~~lv~l~e~~~~i~~lL~~L~~---~~~~~~~~~~~~G~AL 431 (901)
+++++++ ++| + +|+|+|. +++||++++||++.|+++|++|+. ++..++++.||+|+||
T Consensus 187 ~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al 266 (768)
T 1m2o_A 187 EYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSAL 266 (768)
T ss_dssp CCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHH
T ss_pred cccHHHHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHH
Confidence 1223333 322 2 6666665 588999999999999999999997 5678899999999999
Q ss_pred HHHHHhhc----CCCCEEEEEecCCCCCCCCcccCCCCCCCC-CC----CC-CCCCCchHHHHHHHHHHHhhCCcEEEEE
Q psy12437 432 QAAFKLLQ----PTGGRITIFQTCLPNRGPGALQSRENPNQR-SN----DD-PPHMNPATDFYKKIALECTSFYIAVDLF 501 (901)
Q Consensus 432 ~~A~~ll~----~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~-~~----~~-~~~~~~a~~fY~~la~~~~~~~isvdlf 501 (901)
++|..+|+ ..||||++|++|+||.|||+|+.|++++.. +| || +++++++.+||++||++|+++||+||+|
T Consensus 267 ~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF 346 (768)
T 1m2o_A 267 NIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIF 346 (768)
T ss_dssp HHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhhccCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEE
Confidence 99999998 689999999999999999999999876542 43 33 6899999999999999999999999999
Q ss_pred EecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhc------ccccceeEEEEecCCceEEEEecc
Q psy12437 502 ILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR------KIGFESVMRIRCTKGMSIHTFHGN 575 (901)
Q Consensus 502 ~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~------~~g~~a~l~vr~S~gl~i~~~~G~ 575 (901)
+++.+++|+++|+.|++.|||.+++|++|+. ++|..+|.|.+++ ++||+|+||||||+||+|++++||
T Consensus 347 ~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~------~~~~~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~ 420 (768)
T 1m2o_A 347 AGCYDQIGMSEMKQLTDSTGGVLLLTDAFST------AIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGH 420 (768)
T ss_dssp EECSSCCSHHHHHHHHHHHTCCEEEESCTTS------HHHHHHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESS
T ss_pred EccCCccChHHHhhHhhcCCceEEEcCCCch------HHHHHHHHHHHhhccccccceEEEEEEEEEecCCceEEEeecC
Confidence 9999999999999999999999999999986 6799999999987 799999999999999999999999
Q ss_pred ee----------------ccCCCceeecCCCCCceEEEEEEEecccC-------------CCceeEEEEEEEeeecCCCe
Q psy12437 576 FF----------------VRSTDLLALPNVNPDAGYGIQISIDENLT-------------HIQYACFQVAVLYTSSKGDR 626 (901)
Q Consensus 576 ~~----------------~~~t~~~~l~~i~~~~s~~~~~~~~~~l~-------------~~~~~~iQ~allYt~~~G~r 626 (901)
++ .++++.|+++++++|++|+|+|++++++. +...+|||||++||+.+|+|
T Consensus 421 ~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~r 500 (768)
T 1m2o_A 421 ASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTN 500 (768)
T ss_dssp CEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECCC-----------------CEEEEEEEEEEEETTTEE
T ss_pred ccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEeccccccccccccccccccCCCcEEEEEEEEEEcCCCCE
Confidence 98 46789999999999999999999999763 45789999999999999999
Q ss_pred EEEEEecccccccC-HHHHHhccCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCcc
Q psy12437 627 RIRVHTLCLPVVSN-INDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSS 705 (901)
Q Consensus 627 riRV~T~~l~vt~~-~~~v~~~~D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~~l~lp~~ 705 (901)
||||||++++++++ +.++|+++|+||++++|||+|+++++++++.|+|+||+++|++++.+|+. +.|..+++|+||++
T Consensus 501 riRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~l~~~~~~-Yrk~~~~~l~lp~~ 579 (768)
T 1m2o_A 501 RIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYAD-YNKDDPQSFRLAPN 579 (768)
T ss_dssp EEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHSB-CCTTCGGGCBCCTT
T ss_pred EEEEEeecccccCccHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HhcCCccccccCHH
Confidence 99999999999986 89999999999999999999999999999999999999999999988876 46666778999999
Q ss_pred cCcHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccc
Q psy12437 706 LKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSA 785 (901)
Q Consensus 706 l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~ 785 (901)
||+||+|||+|+||++|+.+ ++++|||+|+++.++++++.+++.||||+||+||.. + .|..++||.
T Consensus 580 lk~lP~~~~~L~ks~~l~~~-~~spDer~~~~~~l~~~~~~~~l~~iyP~L~~~~~~---------~----~P~~v~Ls~ 645 (768)
T 1m2o_A 580 FSLYPQFTYYLRRSQFLSVF-NNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSME---------D----DPQPVLLDS 645 (768)
T ss_dssp TTHHHHHHHHHHHSTTTCCT-TSCHHHHHHHHHHHTTSCHHHHHHHHSCEEEEECSS---------S----CCEECCSBG
T ss_pred HHHHHHHHHHHhcccccCCC-CCChhHHHHHHHHHHcCCHHHHHHhhCCeEEEecCC---------C----CCcceeCcH
Confidence 99999999999999999986 899999999999999999999999999999999941 1 356688999
Q ss_pred cccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEE
Q psy12437 786 ERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVI 865 (901)
Q Consensus 786 ~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv 865 (901)
++|++|||||||+|+.|+||+|+++++|+....++.+.++++.+ +.++|+.| ++.|.+.| ++.|++|+
T Consensus 646 ~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~-ll~~p~~~----------a~~i~~~R-~p~Pr~i~ 713 (768)
T 1m2o_A 646 ISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKA-LLEEPKLE----------AAELLVDR-FPLPRFID 713 (768)
T ss_dssp GGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHHHH-HHHHHHHH----------HHHHHHTC-SSCCEEEE
T ss_pred HHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhHHH-HhhhhHHH----------HHHHHhcC-CCCceEEE
Confidence 99999999999999999999999999887655445655544332 22334322 33444444 88999999
Q ss_pred eCCCccHHHHH-HHhcccCC-------------CCCCCHHHHHHHHHHhC
Q psy12437 866 KDSSPDRMEFY-DKLIEDKN-------------AGGMAYYEFLLRIREQV 901 (901)
Q Consensus 866 ~~~~~~~~~f~-~~LvED~~-------------~~~~Sy~~fl~~lh~~i 901 (901)
++.+++++||+ .+|++|.+ .+++||.+||+||||+|
T Consensus 714 ~~~~~sqarfl~s~L~p~~~~~~~~~~~~~~i~tdd~S~~~f~~~L~k~~ 763 (768)
T 1m2o_A 714 TEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVA 763 (768)
T ss_dssp EETTCGGGHHHHTTSBCC-----------CCCCCCSCCHHHHHHHHHHHH
T ss_pred ECCCCcHHHHHHHHcCCCccccccccCCccccccCCcCHHHHHHHHHHHH
Confidence 98888999998 67787764 25799999999999975
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=8.5e-112 Score=1025.42 Aligned_cols=613 Identities=17% Similarity=0.225 Sum_probs=522.2
Q ss_pred cCCCCCCCCCCcccCCCCCC----CCC------------CcCccCcccccCCCCCCCC---CCCCcccc--ccccEEEEe
Q psy12437 244 DLLNTRDILPATKVEPPPIR----LPQ------------NLPEIHEQFLYDRNTEMFG---DPYRRPEI--QSATVEYLA 302 (901)
Q Consensus 244 ~pl~e~~~lp~~~~~Pp~~~----~~~------------~~~~~p~~~~~~~~~~~~~---d~~~rpEL--~~~tvEy~~ 302 (901)
.|+++.+.+|.+.+.| +.| |++ +.|.|++|+..|.++..|. ..+.|||| +++||||++
T Consensus 47 ~P~~~~~~~p~v~~~p-vRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~ 125 (769)
T 2nut_A 47 TPLKERPDLPPIQYEP-VLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVV 125 (769)
T ss_dssp CTTCCCSCCCCBCSCC-CBCSSTTCCCBCCTTSEEETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEE
T ss_pred eeCCCCCCCCcCCCCC-CcCCCCCCCeEECCceEEeCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEc
Confidence 3778777788888876 344 442 6899999999998888885 35789999 899999999
Q ss_pred cccccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCC---------
Q psy12437 303 TADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQ--------- 373 (901)
Q Consensus 303 p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~--------- 373 (901)
|++| +.||+||||||+|.++++ ++++|++|+.+|+.||+++ +|||||||+.||||+++.+.
T Consensus 126 ~~~~-----p~pp~~vFvIDvS~~a~~---l~~l~~si~~~L~~Lp~~~--~VGlITf~~~v~~y~l~~~~~~~~~vf~G 195 (769)
T 2nut_A 126 LRGP-----QMPLIFLYVVDTCMEDED---LQALKESMQMSLSLLPPTA--LVGLITFGRMVQVHELGCEGISKSYVFRG 195 (769)
T ss_dssp CSSC-----CCCCEEEEEEECCSCHHH---HHHHHHHHHHHHTTSCTTC--EEEEEEESSEEEEEESSCCSSCEEEEEET
T ss_pred cCCC-----CCCCEEEEEEECCccHHH---HHHHHHHHHHHHHhCCCCc--eEEEEEeCCEEEEEeCCCCCCccceeecC
Confidence 9876 689999999999999887 8999999999999999876 99999999999999999764
Q ss_pred ------CCCce-eeccC----c-----cccC-CCCCCCcccchhhhHHHHHHHHHhCCc-cc--cCCCCCCCcHHHHHHH
Q psy12437 374 ------TQPSQ-MILTD----I-----DDIF-LPSPENILVNLSECYDMIVDLLKQLPG-KF--KDSLDSGSALGPALQA 433 (901)
Q Consensus 374 ------~~~~~-~v~~d----l-----~d~f-~p~~~~~lv~l~e~~~~i~~lL~~L~~-~~--~~~~~~~~~~G~AL~~ 433 (901)
+++++ ++++| + +|+| +|. ++||++++||++.|+++|++|+. +| ..++++.||+|+||++
T Consensus 196 ~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~-~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~ 274 (769)
T 2nut_A 196 TKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPS-NRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSI 274 (769)
T ss_dssp TSCCCSHHHHHHHC-------------------CC-CSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHH
T ss_pred CccccHHHHHHHhCCCCcccccccccccccCCCcc-cceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHH
Confidence 23343 44664 3 7887 454 88999999999999999999997 55 6788999999999999
Q ss_pred HHHhhc----CCCCEEEEEecCCCCCCCCcccCCCCCCCC-CC----CC-CCCCCchHHHHHHHHHHHhhCCcEEEEEEe
Q psy12437 434 AFKLLQ----PTGGRITIFQTCLPNRGPGALQSRENPNQR-SN----DD-PPHMNPATDFYKKIALECTSFYIAVDLFIL 503 (901)
Q Consensus 434 A~~ll~----~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~-~~----~~-~~~~~~a~~fY~~la~~~~~~~isvdlf~~ 503 (901)
|..+|+ .+||||++|++|+||.|||+|+.+++.... +| || +++++++.+||++||++|+++||+||+|++
T Consensus 275 A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~ 354 (769)
T 2nut_A 275 AVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYAC 354 (769)
T ss_dssp HHHHHHHHSCSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHhhcccCCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEec
Confidence 999999 789999999999999999999999866542 32 45 689999999999999999999999999999
Q ss_pred cCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhc------ccccceeEEEEecCCceEEEEeccee
Q psy12437 504 NSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR------KIGFESVMRIRCTKGMSIHTFHGNFF 577 (901)
Q Consensus 504 s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~------~~g~~a~l~vr~S~gl~i~~~~G~~~ 577 (901)
+.+++|+++|+.|++.|||.+++|++|+. +.|..+|.+.+++ ++||+|+||||||+||+|+++|||++
T Consensus 355 ~~~~vdla~l~~l~~~TGG~~~~~~~F~~------~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~ 428 (769)
T 2nut_A 355 ALDQTGLLEMKCCPNLTGGYMVMGDSFNT------SLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCV 428 (769)
T ss_dssp CSSCCCHHHHTHHHHHSSCCEEEESCSSS------HHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCE
T ss_pred cCCccChHHHHHHhhcCCceEEEcCCCch------hhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeecccc
Confidence 99999999999999999999999999996 5677777777765 79999999999999999999999987
Q ss_pred ---------------ccCCCceeecCCCCCceEEEEEEEecc----cCCCceeEEEEEEEeeecCCCeEEEEEecccccc
Q psy12437 578 ---------------VRSTDLLALPNVNPDAGYGIQISIDEN----LTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVV 638 (901)
Q Consensus 578 ---------------~~~t~~~~l~~i~~~~s~~~~~~~~~~----l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt 638 (901)
.++|+.|+++++++|++|+|+|+++++ +.+...+|||||++||+.+|+|||||||++++++
T Consensus 429 ~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t 508 (769)
T 2nut_A 429 SLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWA 508 (769)
T ss_dssp ECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEEEEEECBC
T ss_pred ccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCccccccCCCCeEEEEEEEEEECCCCCEEEEEEeeccccc
Confidence 578899999999999999999999987 4456789999999999999999999999999999
Q ss_pred cCH---HHHHhccCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCcccCcHHHHHHH
Q psy12437 639 SNI---NDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSSLKVLPLYVLA 715 (901)
Q Consensus 639 ~~~---~~v~~~~D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~~l~lp~~l~~lP~~~~~ 715 (901)
+++ .++|+++|+||++++|||+|+++++++++.|+|+||+++|++++..|+. +.|..+++|+||++||+||+|||+
T Consensus 509 ~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~ld~~li~l~~~~~~-Yrk~~~~sl~lp~~lkllP~~~~~ 587 (769)
T 2nut_A 509 DAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGE-YHKDDPSSFRFSETFSLYPQFMFH 587 (769)
T ss_dssp CGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHCB-CCTTCGGGCBCCTTTTTHHHHHHH
T ss_pred CCcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH-HhCcCcccccccHHHHHHHHHHHH
Confidence 987 5999999999999999999999999999999999999999999988876 566677789999999999999999
Q ss_pred HhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEE
Q psy12437 716 LLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYL 795 (901)
Q Consensus 716 L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyL 795 (901)
|+||++|+.+ ++++|||+|+++.++++++.+++.||||+||+||.. + .|..++||.++|++|||||
T Consensus 588 L~ks~~l~~~-~~spDer~~~~~~l~~~~~~~~~~~iyP~L~~~~~~---------~----~P~~v~ls~~~l~~~gi~L 653 (769)
T 2nut_A 588 LRRSSFLQVF-NNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFS---------G----PPEPVLLDSSSILADRILL 653 (769)
T ss_dssp HHHSTTTCCT-TSCHHHHHHHHHHHTTCCHHHHHHHHSCEEEEECSS---------S----SCEECCSSGGGCCTTCEEE
T ss_pred HhcccccCCC-CCCccHHHHHHHHHHcCCHHHHHHhhcCEEEeccCC---------C----CCCceeCCHHHccCCCEEE
Confidence 9999999986 899999999999999999999999999999999941 1 3566889999999999999
Q ss_pred EeCCceEEEEecCCCChHHHhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCccHHHH
Q psy12437 796 LNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEF 875 (901)
Q Consensus 796 ld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f 875 (901)
||+|+.|+||+|+++++|+...+++.+.++++. +.-+..+..++.|..+| ++.|++|+++.+++++||
T Consensus 654 LD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~-----------~~l~~p~~~a~~i~~~R-~p~Pr~i~~~~g~sqaRf 721 (769)
T 2nut_A 654 MDTFFQILIYHGETIAQWRKSGYQDMPEYENFR-----------HLLQAPVDDAQEILHSR-FPMPRYIDTEHGGSQARF 721 (769)
T ss_dssp EECSSEEEEEECHHHHHHHHHTTTTSGGGHHHH-----------HHHHHHHHHHHHHHHHS-SSCCEEEEEETTCSTTHH
T ss_pred EECCCEEEEEECCcchHHHhCCCCCCchhhhHH-----------HHHHhHHHHHHHHHhcC-CCCCeEEEEcCCCcHHHH
Confidence 999999999999999999865443332222111 12233455666777666 899999999999999999
Q ss_pred HHHhcccCC-----------------CCCCCHHHHHHHHHHhC
Q psy12437 876 YDKLIEDKN-----------------AGGMAYYEFLLRIREQV 901 (901)
Q Consensus 876 ~~~LvED~~-----------------~~~~Sy~~fl~~lh~~i 901 (901)
+..++++.. .+++||.+|+.||+|++
T Consensus 722 l~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~~ 764 (769)
T 2nut_A 722 LLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLA 764 (769)
T ss_dssp HHHHCC----------------------CCSHHHHHHHHHHHH
T ss_pred HHHhcCCcccccCCCcCCCcCCccccccccCHHHHHHHHHHHh
Confidence 988888632 14899999999999973
No 8
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.27 E-value=9.3e-09 Score=118.08 Aligned_cols=306 Identities=10% Similarity=0.065 Sum_probs=192.7
Q ss_pred CCcEEEEEEEcchhHHh-hchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQ-SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~-~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
.+.-++||||+|.+... ..-++.++++++..++.|+++. +||||+|++.+..+--..
T Consensus 76 ~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~d--rv~lV~Fs~~a~~~~p~t-------------------- 133 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGA--FFAVVAGTEGARVVYPTG-------------------- 133 (464)
T ss_dssp CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTC--EEEEEEESSSEEEEESSS--------------------
T ss_pred CCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCC--EEEEEEEcCceEEEecCC--------------------
Confidence 34669999999986541 2358899999999999998766 899999998876531100
Q ss_pred CCCcccch-hhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC---CEEEEEecCCCCCCCCcccCCCCCC
Q psy12437 392 PENILVNL-SECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG---GRITIFQTCLPNRGPGALQSRENPN 467 (901)
Q Consensus 392 ~~~~lv~l-~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G---GrI~~F~~g~pt~GpG~l~~~~~~~ 467 (901)
.+ +++. .+.++.+...|+.|.. ...+.++.||..|..+|.... ..|+++++|.++.+.
T Consensus 134 -~~-l~~~~~~~~~~l~~~I~~L~~------~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~---------- 195 (464)
T 4fx5_A 134 -GQ-LLRADYQSRAAAKEAVGRLHA------NGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESET---------- 195 (464)
T ss_dssp -SS-CEECSHHHHHHHHHHHHTCCC------CSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSC----------
T ss_pred -cc-cccCCHHHHHHHHHHHHcCCC------CCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCC----------
Confidence 00 1111 2345667777787752 456889999999999997632 478999999876421
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHH
Q psy12437 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSR 547 (901)
Q Consensus 468 ~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~ 547 (901)
...... +.++.+.+|.|..|.+.. ..|...|..++..|||..++.+++.. -.+.|.+.+.+
T Consensus 196 ------------~~~l~~--~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~tgG~~~~v~d~~~----L~~~f~~i~~~ 256 (464)
T 4fx5_A 196 ------------PADLAR--AIQSSIGNFTADCRGIGE-DWEPKELRKIADALLGTVGIIRDPAT----LAEDFREMTAK 256 (464)
T ss_dssp ------------HHHHHH--HHHHHTTTCEEEEEEESS-SSCHHHHHHHHHHTTCCEEEESSGGG----HHHHHHHHHHH
T ss_pred ------------hHHHHH--HHHHhcCCCeEEEEEeCC-ccCHHHHHHHHHhCCCEEEEcCCHHH----HHHHHHHHHHH
Confidence 011111 223456789998888864 47778999999999999998877652 23444444443
Q ss_pred hhhcccccceeEEEEecCCceEEEEec--c----eecc-----C--CCceeecCCCCCceEEEEEEEecc-cCCCceeE-
Q psy12437 548 YLTRKIGFESVMRIRCTKGMSIHTFHG--N----FFVR-----S--TDLLALPNVNPDAGYGIQISIDEN-LTHIQYAC- 612 (901)
Q Consensus 548 ~l~~~~g~~a~l~vr~S~gl~i~~~~G--~----~~~~-----~--t~~~~l~~i~~~~s~~~~~~~~~~-l~~~~~~~- 612 (901)
+.....-++.++|++..|+.+..+.. + ...+ + ...+.++.+ .+.+-.|.+++.-. ...+....
T Consensus 257 -~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~~~g~~~~~ 334 (464)
T 4fx5_A 257 -SMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPGNIGQEKLA 334 (464)
T ss_dssp -HHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCCCTTCEEEE
T ss_pred -hhchheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCCCcEEEEECCcC-CCCeEEEEEEEEcCCCCCCceeEE
Confidence 34567789999999999998876521 1 1111 1 235677777 66655555555422 22233333
Q ss_pred EEEEEEeeecCCCeEEEEEecccccccCHHHHHhccCHHHHH--------HHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy12437 613 FQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIA--------GLLAKMAVDRSLQHSLSDAREAFLNVV 681 (901)
Q Consensus 613 iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~a~~--------~~lar~~~~~~~~~~~~d~r~~l~~~l 681 (901)
.++.+.|.+..|++.+.=..+...++.... .-..+|.++.- ..+ +.+......++...|.+.|.+..
T Consensus 335 ~~v~~~y~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~V~~~~~~~~~a~~~-~~a~~~~~~gd~~~A~~~L~~A~ 409 (464)
T 4fx5_A 335 GRVQLVAKDAGGATLLGEGKIRAVWTEDTD-LSTRINGRVAHYTGQAEMAAAI-QEGLDAQAAGDLDTATARLGRAM 409 (464)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEECSCHH-HHSCCCHHHHHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCccccccccceEEEEEcccc-ccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Confidence 799999999888732222234444444432 12234443322 222 23444555677777776665543
No 9
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=1.9e-07 Score=95.99 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=125.6
Q ss_pred CCCCcEEEEEEEcchhHHhh----chHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccc
Q psy12437 311 PPQPAMYLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDD 386 (901)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~~----g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d 386 (901)
+..+..++||||+|.+.... ..++.+++++...++.++++ +||||+|++..++.-
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~~~---~v~lv~F~~~~~~~~------------------ 66 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELDND---KVGMIVFAGDAFTQL------------------ 66 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCSSC---EEEEEEESSSEEEEE------------------
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCCCC---eEEEEEECCCceEeC------------------
Confidence 34678899999999865432 26889999999999998743 899999987654320
Q ss_pred cCCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC---CCEEEEEecCCCCCCCCcccCC
Q psy12437 387 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---GGRITIFQTCLPNRGPGALQSR 463 (901)
Q Consensus 387 ~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---GGrI~~F~~g~pt~GpG~l~~~ 463 (901)
| +....+.+..+|+.|.... .....+.++.||..|..++... ...|+++++|.++.| .
T Consensus 67 ---~--------~~~~~~~~~~~l~~l~~~~--~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~--~---- 127 (218)
T 3ibs_A 67 ---P--------ITSDYISAKMFLESISPSL--ISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG--G---- 127 (218)
T ss_dssp ---E--------EESCHHHHHHHHHTCCGGG--CCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS--C----
T ss_pred ---C--------CCCCHHHHHHHHHhcCccc--CCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC--c----
Confidence 1 1112345667788886321 1245688999999999998753 358888999887764 0
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCC------------------------ccCchhhhhcccc
Q psy12437 464 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ------------------------YVDLATLSGVSKF 519 (901)
Q Consensus 464 ~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~------------------------~~~l~~l~~l~~~ 519 (901)
..+.+..+.+.||.|.++.+..+ ..+...|..+|..
T Consensus 128 --------------------~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~ 187 (218)
T 3ibs_A 128 --------------------AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKD 187 (218)
T ss_dssp --------------------HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHh
Confidence 25677888899999999988764 5677889999999
Q ss_pred CCceEEEeCCCCCCcchhHHHHHHHHHHh
Q psy12437 520 SSGCIHHIPLYSGKNMSHVYQLDRMFSRY 548 (901)
Q Consensus 520 TGG~v~~y~~f~~~~~~~~~~~~~dl~~~ 548 (901)
|||..++..+-. ...+.+.+.|.+.
T Consensus 188 ~gG~~~~~~~~~----~~~~~~~~~i~~l 212 (218)
T 3ibs_A 188 GKGIYVRVDNSN----SAQKAISQEISKM 212 (218)
T ss_dssp TEEEEEEECSSS----HHHHHHHHHHHHH
T ss_pred cCCEEEECCCCh----HHHHHHHHHHHHh
Confidence 999988876522 2345666666554
No 10
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.42 E-value=7.9e-06 Score=82.99 Aligned_cols=162 Identities=10% Similarity=0.078 Sum_probs=108.8
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
+.-.+||||+|.+.- ..-++.+++.++..++.+.-. ...+||+|+|++.++.. .+. +.
T Consensus 13 ~~divfvlD~SgSm~-~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~------------~~------- 72 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLS-EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK------------DR------- 72 (202)
T ss_dssp CEEEEEEEECBTTSC-HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT------------CC-------
T ss_pred cccEEEEEECCCCCC-HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC------------CC-------
Confidence 677999999998532 234788999999999988622 24699999999876542 110 00
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH-hhcC---CC--CEEEEEecCCCCCCCCcccCCCC
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP---TG--GRITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~---~G--GrI~~F~~g~pt~GpG~l~~~~~ 465 (901)
..++.+...|+.|... ....+.+|.||..|.. ++.. .+ -.|+++++|.++.|. .
T Consensus 73 ---------~~~~~~~~~i~~l~~~----gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~-----~-- 132 (202)
T 1ijb_A 73 ---------KRPSELRRIASQVKYA----GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRM-----S-- 132 (202)
T ss_dssp ---------CCHHHHHHHHHTCCCC----CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGG-----C--
T ss_pred ---------CCHHHHHHHHHhCcCC----CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccc-----h--
Confidence 1234566677777531 1124899999999974 5542 11 257888898765321 0
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhcccc-CCceEEEeCCCCC
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF-SSGCIHHIPLYSG 532 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~-TGG~v~~y~~f~~ 532 (901)
+-..+.+..+.+.||.|-.+.+.. ..|..+|..++.. +||.+|+.++|..
T Consensus 133 ----------------~~~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~~ 183 (202)
T 1ijb_A 133 ----------------RNFVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPENKAFVLSSVDE 183 (202)
T ss_dssp ----------------TTHHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTCCCEEESSGGG
T ss_pred ----------------HHHHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHhCCCCcccEEEeCCHHH
Confidence 013456677778888776666653 4788899999884 6889998888764
No 11
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.39 E-value=8.4e-06 Score=83.78 Aligned_cols=172 Identities=16% Similarity=0.240 Sum_probs=108.2
Q ss_pred CCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy12437 311 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
+..+.-++||||+|.+... ..++.+++++...++.+.. +...+||+|+|++.++..- ++.+
T Consensus 12 ~~~~~div~vlD~SgSM~~-~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~--------------~~~~--- 73 (223)
T 1q0p_A 12 PSGSMNIYLVLDGSDSIGA-SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSE--- 73 (223)
T ss_dssp ---CEEEEEEEECSTTTCH-HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE--------------CTTS---
T ss_pred CCCceeEEEEEeCCCCCch-HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee--------------cccc---
Confidence 4568889999999975432 2377788888888766543 2235999999998765421 0100
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC-----------CEEEEEecCCCCCCCC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG-----------GRITIFQTCLPNRGPG 458 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G-----------GrI~~F~~g~pt~GpG 458 (901)
+....++.+...|+.|.... ......+.+|.||..|...|...+ ..|+++++|.++.|..
T Consensus 74 --------~~~~~~~~~~~~i~~l~~~~-~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~ 144 (223)
T 1q0p_A 74 --------ADSSNADWVTKQLNEINYED-HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD 144 (223)
T ss_dssp --------GGGGCHHHHHHHHHTCCTTS-CSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC
T ss_pred --------CCCCCHHHHHHHHHhccccc-ccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCC
Confidence 11223455667778775321 113567899999999999887421 2488899999887630
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHHHH---------HHHhhCCcEEEEEEecCCccCchhhhhccccCCc--eEEEe
Q psy12437 459 ALQSRENPNQRSNDDPPHMNPATDFYKKIA---------LECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG--CIHHI 527 (901)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~a~~fY~~la---------~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG--~v~~y 527 (901)
+ ...-+.+. ..+.+.||.|..+.+.. .++...|..++..||| .+|..
T Consensus 145 -------~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~-~~~~~~L~~iA~~~~G~~~~~~~ 202 (223)
T 1q0p_A 145 -------P--------------ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKV 202 (223)
T ss_dssp -------T--------------HHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCCHHHHHHHSCCCTTCCCEEET
T ss_pred -------h--------------HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecC-cCCHHHHHHHhcCCCCCceEEEc
Confidence 0 01112221 22345567666666543 4788999999999999 77777
Q ss_pred CCCC
Q psy12437 528 PLYS 531 (901)
Q Consensus 528 ~~f~ 531 (901)
+++.
T Consensus 203 ~~~~ 206 (223)
T 1q0p_A 203 KDME 206 (223)
T ss_dssp TC--
T ss_pred CCHH
Confidence 6655
No 12
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.32 E-value=9.9e-06 Score=81.18 Aligned_cols=158 Identities=17% Similarity=0.148 Sum_probs=108.8
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
.+.-.+||||+|.+.. ..-++.+++.+...++.++. ..+.+||+|+|++.+++.- ++.+
T Consensus 4 ~~~div~vlD~SgSm~-~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~--------------~l~~----- 63 (189)
T 1atz_A 4 QPLDVILLLDGSSSFP-ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDV--------------PWNV----- 63 (189)
T ss_dssp CCEEEEEEEECSSSSC-HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE--------------CTTC-----
T ss_pred CceeEEEEEeCCCCCC-hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEE--------------ecCC-----
Confidence 4678999999997533 23478899999999988863 3457999999998765410 0000
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC--CC-----CE-EEEEecCCCCCCCCcccCC
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP--TG-----GR-ITIFQTCLPNRGPGALQSR 463 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~--~G-----Gr-I~~F~~g~pt~GpG~l~~~ 463 (901)
...++.+...|+.|.. ....+.+|.||..|...+.. .| .| |+++++|.++-+
T Consensus 64 --------~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~------- 123 (189)
T 1atz_A 64 --------VPEKAHLLSLVDVMQR-----EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS------- 123 (189)
T ss_dssp --------CCCHHHHHHHHHTCCC-----CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-------
T ss_pred --------CCCHHHHHHHHHhCcC-----CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-------
Confidence 0123456667777753 23568999999999987743 11 25 677888754310
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCc-eEEEeCCCC
Q psy12437 464 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG-CIHHIPLYS 531 (901)
Q Consensus 464 ~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG-~v~~y~~f~ 531 (901)
..+.+..+.+.||.|..+.+.. ..+..+|..++..++| .++...+|.
T Consensus 124 --------------------~~~~~~~~~~~gi~v~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~ 171 (189)
T 1atz_A 124 --------------------VDAAADAARSNRVTVFPIGIGD-RYDAAQLRILAGPAGDSNVVKLQRIE 171 (189)
T ss_dssp --------------------CHHHHHHHHHTTEEEEEEEESS-SSCHHHHHHHTGGGGGGGCEEESSTT
T ss_pred --------------------HHHHHHHHHHCCCEEEEEEcCC-cCCHHHHHHHHCCCcccCEEEecChh
Confidence 1466777788898887777754 3678899999999875 577777665
No 13
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.32 E-value=1.7e-05 Score=78.73 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=101.2
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
.|.-.+||||+|.+... ... ..++.++..+..+-. .+.+||+|+|++..+..- |
T Consensus 5 ~~~dvv~vlD~SgSM~~-~~~-~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~---------------------~-- 58 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVAN-NWI-EIYNFVQQLAERFVS-PEMRLSFIVFSSQATIIL---------------------P-- 58 (182)
T ss_dssp SCEEEEEEEECSGGGGG-GHH-HHHHHHHHHHHHCCC-TTEEEEEEEESSSEEEEE---------------------E--
T ss_pred CceeEEEEEECCCCccc-CHH-HHHHHHHHHHHHhcC-CCceEEEEEeCCCceEEE---------------------C--
Confidence 46789999999986443 222 244555555544322 346999999988755321 0
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCcccCCCCCC
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQSRENPN 467 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~F~~g~pt~GpG~l~~~~~~~ 467 (901)
+...++.+..+|+.|... .....+.++.||..|..++.. ....|+++++|.++.+
T Consensus 59 ------~~~~~~~~~~~l~~l~~~---~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~----------- 118 (182)
T 1shu_X 59 ------LTGDRGKISKGLEDLKRV---SPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------- 118 (182)
T ss_dssp ------EECCHHHHHHHHHHHHTC---CCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT-----------
T ss_pred ------CCCCHHHHHHHHHhcccC---CCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC-----------
Confidence 001223455556655422 123478899999999999853 3467888888875421
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCC
Q psy12437 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 530 (901)
Q Consensus 468 ~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f 530 (901)
......+.+..+.+.||.|..+.+. ..+..+|..++..|||..+.-++|
T Consensus 119 ------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~~~~~~~~~~ 167 (182)
T 1shu_X 119 ------------VPSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFPVKGGF 167 (182)
T ss_dssp ------------HHHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGGGEEESSSTT
T ss_pred ------------CchhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCCceEEccCCH
Confidence 1123456788888899887777765 567889999999997754333244
No 14
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.8e-06 Score=90.79 Aligned_cols=148 Identities=13% Similarity=0.123 Sum_probs=102.0
Q ss_pred EEEEEEEcchhHHhh----chHHHHHHHHHHHHhcCCC-CCCceEEEEEEcc-EEEEEEcCCCCCCCceeeccCccccCC
Q psy12437 316 MYLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDS-AVHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 316 ~~vFvID~s~~a~~~----g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~-~V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
+-|||||+|...... ..+++.++++...++.+.. ++.-+||||+|.. ...++
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 468999999865422 2578888888777754311 2222899999953 22211
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CC--CEEEEEecCCCCCCCCcccCCC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TG--GRITIFQTCLPNRGPGALQSRE 464 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~G--GrI~~F~~g~pt~GpG~l~~~~ 464 (901)
+++...+..|...|+.|. ....+.++.||..|..+|+. .+ -|||+|++|+-+.
T Consensus 63 -------~plT~D~~~il~aL~~l~------~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~--------- 120 (268)
T 4b4t_W 63 -------STFTAEFGKILAGLHDTQ------IEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD--------- 120 (268)
T ss_dssp -------EEEESCHHHHHHHHTTCC------CCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS---------
T ss_pred -------cCCcchHHHHHHHhhhcC------cCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC---------
Confidence 111223355667777774 34668999999999999975 22 3899999986221
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCc
Q psy12437 465 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG 522 (901)
Q Consensus 465 ~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG 522 (901)
..+-..++|+++.++||.||++.|..+..+-.-|..+++..+|
T Consensus 121 ---------------~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 121 ---------------SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp ---------------CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred ---------------CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 2234679999999999999999999877677778887766655
No 15
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.29 E-value=5.4e-06 Score=83.60 Aligned_cols=160 Identities=11% Similarity=0.115 Sum_probs=106.4
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
.+.-.+||||+|.+... ..+..++++++..++.+. ....+||+|+|++.++.. .+. +..
T Consensus 8 ~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~l~-~~~~~v~lv~f~~~~~~~~~~~------------~~~------ 67 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISS-RNFATMMNFVRAVISQFQ-RPSTQFSLMQFSNKFQTHFTFE------------EFR------ 67 (198)
T ss_dssp CCEEEEEEEECCTTSCH-HHHHHHHHHHHHHHTTSC-TTTEEEEEEEESSSEEEEECHH------------HHH------
T ss_pred CCeeEEEEEECCCCCCH-HHHHHHHHHHHHHHHhcC-CCCcEEEEEEeCCCccEEEecC------------ccC------
Confidence 56789999999975432 235678889999998884 334599999999876532 110 000
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHH-HhhcC-------CCCEEEEEecCCCCCCCCcccCC
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAF-KLLQP-------TGGRITIFQTCLPNRGPGALQSR 463 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~-~ll~~-------~GGrI~~F~~g~pt~GpG~l~~~ 463 (901)
.++.+...|+.|.. ....+.+|.||..|. .++.. ....|+++++|.++.++-
T Consensus 68 ----------~~~~~~~~i~~l~~-----~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~----- 127 (198)
T 1n3y_A 68 ----------RSSNPLSLLASVHQ-----LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL----- 127 (198)
T ss_dssp ----------HCSSGGGGGTTCCC-----CCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSS-----
T ss_pred ----------CHHHHHHHHhcCcC-----CCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcc-----
Confidence 00111122333321 235789999999999 55543 124688999998774320
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc---cCchhhhhccccCCceE-EEeCCCC
Q psy12437 464 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY---VDLATLSGVSKFSSGCI-HHIPLYS 531 (901)
Q Consensus 464 ~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~---~~l~~l~~l~~~TGG~v-~~y~~f~ 531 (901)
-+.+.+..+.+.||.|..+.+..+. .+...|..++..|||.. +..+++.
T Consensus 128 -------------------~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~ 180 (198)
T 1n3y_A 128 -------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFD 180 (198)
T ss_dssp -------------------CHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGG
T ss_pred -------------------cHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHH
Confidence 0346677788899998888886654 36889999999999974 6667665
No 16
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.28 E-value=1.7e-05 Score=80.20 Aligned_cols=172 Identities=10% Similarity=0.084 Sum_probs=111.8
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
.+.-.+||||+|.+.. . ++.+++.++..++.+.. ....+||+|+|++.+++.- .+.+
T Consensus 5 ~~~div~vlD~SgSm~--~-~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~--------------~l~~----- 62 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIY--P-WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVF--------------NLNT----- 62 (200)
T ss_dssp -CEEEEEEEECCTTCC--C-HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEE--------------CTTT-----
T ss_pred CcccEEEEEECCCCcc--c-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEE--------------eCCC-----
Confidence 4678999999998533 2 78899999999988862 1245999999998765310 0100
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHh-hcC-CC------CEEEEEecCCCCCCCCcccCC
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL-LQP-TG------GRITIFQTCLPNRGPGALQSR 463 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l-l~~-~G------GrI~~F~~g~pt~GpG~l~~~ 463 (901)
+ ..++.+...|+.|... ....+.+|.||..|... +.. .| ..|+++++|.++.+.
T Consensus 63 ---~-----~~~~~~~~~i~~l~~~----~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~------ 124 (200)
T 1v7p_C 63 ---Y-----KTKEEMIVATSQTSQY----GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGS------ 124 (200)
T ss_dssp ---C-----SSHHHHHHHHHHCCCC----CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG------
T ss_pred ---c-----CCHHHHHHHHHhhhcc----CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc------
Confidence 0 1233455566666421 11258899999999984 542 12 248889998866321
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecC----CccC----chhhhhccccCCce-EEEeCCCCCCc
Q psy12437 464 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNS----QYVD----LATLSGVSKFSSGC-IHHIPLYSGKN 534 (901)
Q Consensus 464 ~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~----~~~~----l~~l~~l~~~TGG~-v~~y~~f~~~~ 534 (901)
-+.+.+.++.+.||.|..+.+.. ..++ ..+|..++..|||. +|..++|..
T Consensus 125 -------------------~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~-- 183 (200)
T 1v7p_C 125 -------------------MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAA-- 183 (200)
T ss_dssp -------------------GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGG--
T ss_pred -------------------cHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcCCHHH--
Confidence 13467778888999888777732 2345 57899999999886 566677663
Q ss_pred chhHHHHHHHHHHh
Q psy12437 535 MSHVYQLDRMFSRY 548 (901)
Q Consensus 535 ~~~~~~~~~dl~~~ 548 (901)
-..+.+.|.+.
T Consensus 184 ---l~~i~~~i~~~ 194 (200)
T 1v7p_C 184 ---LLEKAGTLGEQ 194 (200)
T ss_dssp ---GHHHHHHHHHH
T ss_pred ---HHHHHHHHHhh
Confidence 23444445443
No 17
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.27 E-value=5.3e-06 Score=83.54 Aligned_cols=162 Identities=10% Similarity=0.147 Sum_probs=105.5
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
.+.-.+||||+|.+... .-++.++++++..++.+. ....+||+|+|++.++..- -+.+.
T Consensus 4 ~~~div~vlD~SgSm~~-~~~~~~k~~~~~~~~~l~-~~~~~v~vv~f~~~~~~~~-----------~l~~~-------- 62 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIP-HDFRRMKEFVSTVMEQLK-KSKTLFSLMQYSEEFRIHF-----------TFKEF-------- 62 (194)
T ss_dssp CCEEEEEEEECCTTSCH-HHHHHHHHHHHHHHHHHC-CTTEEEEEEEESSSEEEEE-----------CHHHH--------
T ss_pred CCeeEEEEEeCCCCCCH-HHHHHHHHHHHHHHHhcC-CCCeEEEEEEecCCceEEE-----------ecCCc--------
Confidence 46789999999985332 246778888888888775 3345999999998765310 00000
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH-hhcC-CC------CEEEEEecCCCCCCCCcccCCC
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP-TG------GRITIFQTCLPNRGPGALQSRE 464 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~-~G------GrI~~F~~g~pt~GpG~l~~~~ 464 (901)
..++.+...|+.|.. ....+.+|.||..|.. ++.. .| ..|+++++|.++..+-.
T Consensus 63 --------~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~----- 124 (194)
T 1mf7_A 63 --------QNNPNPRSLVKPITQ-----LLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLG----- 124 (194)
T ss_dssp --------HHSCCHHHHHTTCCC-----CCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC-----
T ss_pred --------CCHHHHHHHHHhCcC-----CCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchh-----
Confidence 011224445666642 2357899999999996 4432 23 24888999987711100
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc---cCchhhhhccccC-CceEEEeCCCCC
Q psy12437 465 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY---VDLATLSGVSKFS-SGCIHHIPLYSG 532 (901)
Q Consensus 465 ~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~---~~l~~l~~l~~~T-GG~v~~y~~f~~ 532 (901)
+.+.+.++.+.||.|..+.+..+. .+..+|..++..+ +|.+|..++|..
T Consensus 125 -------------------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 177 (194)
T 1mf7_A 125 -------------------YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEA 177 (194)
T ss_dssp -------------------GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred -------------------hHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHH
Confidence 123456677789888777776542 1378899999986 588888888764
No 18
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.25 E-value=1.3e-05 Score=79.75 Aligned_cols=158 Identities=9% Similarity=0.031 Sum_probs=103.9
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
.|.-++||||+|.+... . ...+++.++..+..+-. ++.+||+|+|++.+++.- |
T Consensus 6 ~~~div~vlD~SgSM~~-~-~~~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~---------------------~-- 59 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVLH-H-WNEIYYFVEQLAHKFIS-PQLRMSFIVFSTRGTTLM---------------------K-- 59 (185)
T ss_dssp SEEEEEEEEECSGGGGG-G-HHHHHHHHHHHHHHCCC-TTEEEEEEEESSSEEEEE---------------------E--
T ss_pred CCeeEEEEEeCCCChhh-h-HHHHHHHHHHHHHHhCC-CCcEEEEEEEecCceEEe---------------------c--
Confidence 35668999999986443 2 56667777777766532 357999999988765421 0
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhc--CCC-----CEEEEEecCCCCCCCCcccCCCC
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQ--PTG-----GRITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~--~~G-----GrI~~F~~g~pt~GpG~l~~~~~ 465 (901)
+.+.++.+...|+.|... .....+.+|.||..|...+. ..+ ..|+++++|.++.++
T Consensus 60 ------l~~~~~~~~~~i~~l~~~---~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~-------- 122 (185)
T 3n2n_F 60 ------LTEDREQIRQGLEELQKV---LPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDL-------- 122 (185)
T ss_dssp ------EECCHHHHHHHHHHHHTC---CCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHH--------
T ss_pred ------cCCCHHHHHHHHHHHhhh---cCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCc--------
Confidence 111334555666666432 22456889999999999772 222 367888887654311
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCC-CC
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL-YS 531 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~-f~ 531 (901)
..-..+.+..+.+.||.|..+.+. ..+-.+|..++.. +|.+|+..+ |.
T Consensus 123 ---------------~~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~~-~~~~~~~~~~~~ 171 (185)
T 3n2n_F 123 ---------------FFYSEREANRSRDLGAIVYAVGVK--DFNETQLARIADS-KDHVFPVNDGFQ 171 (185)
T ss_dssp ---------------HHHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSSS-GGGEEEHHHHHH
T ss_pred ---------------ccchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhCC-CCCeEEeccHHH
Confidence 011256788888899877777665 6788899999965 577777654 43
No 19
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.24 E-value=5.7e-06 Score=87.94 Aligned_cols=166 Identities=10% Similarity=0.013 Sum_probs=108.4
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
.+.-++||||.|.+.-...+.+.++++++..++.+.- ....+||||+|++.+...- |+
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~---------------------~l 75 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELI---------------------RL 75 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEE---------------------CT
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEE---------------------ec
Confidence 4677999999998654344435788899999988862 1346999999998755310 10
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCC------EEEEEecCCCCCCCCcccCCCC
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGG------RITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GG------rI~~F~~g~pt~GpG~l~~~~~ 465 (901)
. .+ ....++.+...|+.|... ......+.+|.||..|..++...|+ .|+++++|.++- +
T Consensus 76 ~-~~---~~~~~~~~~~~i~~l~~~--~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d-~-------- 140 (266)
T 4hqo_A 76 G-SG---QSIDKRQALSKVTELRKT--YTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS-K-------- 140 (266)
T ss_dssp T-SH---HHHCHHHHHHHHHHHHHH--CCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC-H--------
T ss_pred C-CC---CccCHHHHHHHHHHhhhc--cCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC-c--------
Confidence 0 00 011134455566666311 0123478899999999998876533 588888887551 0
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccC--Cc--eEEEeCCCC
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS--SG--CIHHIPLYS 531 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~T--GG--~v~~y~~f~ 531 (901)
.-..+.+.++.+.||.|-.+.+.. ..+-..|..++... || .+|++.+|+
T Consensus 141 ----------------~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~iA~~~~~~g~~~~~~~~d~~ 193 (266)
T 4hqo_A 141 ----------------YRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRLIAGCRPREPNCKFYSYADWN 193 (266)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHHHHTCCTTCSSCTTEECSCHH
T ss_pred ----------------hHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHHhhCCCCCCCCCCeEEecCHH
Confidence 124567788888998777776654 46667778888774 43 777776654
No 20
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.24 E-value=1.3e-05 Score=85.76 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=112.1
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLP 390 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p 390 (901)
.+.-++||||+|.+.....+++.++++++..++.+... ...+||||+|++.++.. .+....
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~----------------- 82 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDA----------------- 82 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSC-----------------
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccC-----------------
Confidence 47789999999986544456688999999999988752 34699999999876432 222100
Q ss_pred CCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCC------EEEEEecCCCCCCCCcccCCC
Q psy12437 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGG------RITIFQTCLPNRGPGALQSRE 464 (901)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GG------rI~~F~~g~pt~GpG~l~~~~ 464 (901)
...++.+...|+.|... ......+.+|.||..|...+...++ .||++++|.++-+
T Consensus 83 ---------~~~~~~l~~~i~~l~~~--~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~-------- 143 (281)
T 4hqf_A 83 ---------SKNKEKALIIIKSLLST--NLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSI-------- 143 (281)
T ss_dssp ---------SSCHHHHHHHHHHHHHT--TGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCH--------
T ss_pred ---------ccCHHHHHHHHHHHhhc--cCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCc--------
Confidence 00123344455555321 0123478899999999887765433 4888888876521
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhcccc--CCc--eEEEeCCCCC
Q psy12437 465 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF--SSG--CIHHIPLYSG 532 (901)
Q Consensus 465 ~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~--TGG--~v~~y~~f~~ 532 (901)
.-..+.+..+.+.||.|-.+.+..+ ++-..|..++.. +|| .+++..+|+.
T Consensus 144 -----------------~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 144 -----------------QDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFLVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp -----------------HHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHHTTSCSSSSCCTTEEEECGGG
T ss_pred -----------------HHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhhhCCCCCCCCCceEEecchhh
Confidence 1235677778889988777776544 677888888876 676 7888888874
No 21
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.23 E-value=2.5e-05 Score=80.58 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=107.3
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLP 390 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p 390 (901)
.+.-.+||||+|.+.. + ++.+++.++..++.+.. ....+||+|+|++.++.. .+ .|.
T Consensus 21 ~~~div~vlD~SgSM~--~-~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l------------~~~------ 79 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY--P-WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL------------NKY------ 79 (223)
T ss_dssp -CEEEEEEEECSTTCC--C-HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECT------------TTC------
T ss_pred CcceEEEEEECCCChh--h-HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEec------------CCC------
Confidence 4677999999998643 2 78899999999988752 234599999999876542 11 010
Q ss_pred CCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHh-hcC-----CC--CEEEEEecCCCCCCCCcccC
Q psy12437 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL-LQP-----TG--GRITIFQTCLPNRGPGALQS 462 (901)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l-l~~-----~G--GrI~~F~~g~pt~GpG~l~~ 462 (901)
..+..+...|+.|.. .....+.+|.||..|... +.. .+ ..|+++++|.++.|.
T Consensus 80 ----------~~~~~~~~~i~~l~~----~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~----- 140 (223)
T 2b2x_A 80 ----------SSTEEVLVAANKIVQ----RGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY----- 140 (223)
T ss_dssp ----------CSHHHHHHHHTTCCC----CCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG-----
T ss_pred ----------CCHHHHHHHHHhhhc----cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc-----
Confidence 012234444555531 112248899999999986 442 11 358888998876532
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCcc--------Cchhhhhcccc-CCceEEEeCCCCC
Q psy12437 463 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYV--------DLATLSGVSKF-SSGCIHHIPLYSG 532 (901)
Q Consensus 463 ~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~--------~l~~l~~l~~~-TGG~v~~y~~f~~ 532 (901)
-+.+.+..+.+.||.|..+.+..+.- ...+|..++.. |||.+|..+++..
T Consensus 141 --------------------~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~ 199 (223)
T 2b2x_A 141 --------------------RLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 199 (223)
T ss_dssp --------------------GHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTG
T ss_pred --------------------cHHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeCCHHH
Confidence 13567778888999888877754321 04789999998 9999999887763
No 22
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.17 E-value=2.2e-05 Score=80.30 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=106.9
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCC-CCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMP-GDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp-~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p 390 (901)
+.+.-.+||||+|.+.. -++.+++.++..++.+. .....+||+|+|++.++..- |
T Consensus 5 ~~~~div~vlD~SgSm~---~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~---------------------~ 60 (213)
T 1pt6_A 5 STQLDIVIVLDGSNSIY---PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF---------------------N 60 (213)
T ss_dssp --CEEEEEEEECCTTCC---CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEE---------------------C
T ss_pred CCCccEEEEEECCCChh---hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEE---------------------e
Confidence 34678999999998643 27788889999888775 22346999999998765420 1
Q ss_pred CCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHh-hcC-----CC--CEEEEEecCCCCCCCCcccC
Q psy12437 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL-LQP-----TG--GRITIFQTCLPNRGPGALQS 462 (901)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l-l~~-----~G--GrI~~F~~g~pt~GpG~l~~ 462 (901)
+ .++ ..++.+...|+.|.. .....+.+|.||..|... +.. .+ ..|+++++|.++.|.
T Consensus 61 l-~~~-----~~~~~~~~~i~~l~~----~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~----- 125 (213)
T 1pt6_A 61 L-NKY-----SSTEEVLVAAKKIVQ----RGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNH----- 125 (213)
T ss_dssp T-TTC-----SSHHHHHHHHHTCCC----CCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSH-----
T ss_pred c-ccc-----CCHHHHHHHHHhccC----CCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc-----
Confidence 0 000 012334455565532 112247899999999986 441 11 358889998866431
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc----cC----chhhhhcccc-CCceEEEeCCCCC
Q psy12437 463 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY----VD----LATLSGVSKF-SSGCIHHIPLYSG 532 (901)
Q Consensus 463 ~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~----~~----l~~l~~l~~~-TGG~v~~y~~f~~ 532 (901)
-+.+.+.++.+.||.|..+.+..+. .+ ..+|..++.. |||.+|..+++..
T Consensus 126 --------------------~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~ 184 (213)
T 1pt6_A 126 --------------------RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 184 (213)
T ss_dssp --------------------HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred --------------------cHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeCCHHH
Confidence 1356777888899888777765431 11 3789999998 7899999887763
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.14 E-value=2.3e-05 Score=91.39 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=110.5
Q ss_pred CCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcC---CCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCcccc
Q psy12437 311 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM---PGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDI 387 (901)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~l---p~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~ 387 (901)
+..+.-++||||+|.+.... -++.++++++..++.| +.+ .+||||+|++..++.-
T Consensus 6 ~~~~~divfvlD~SgSM~~~-~~~~~k~~~~~l~~~l~~~~~~--~rv~lv~f~~~~~~~~------------------- 63 (509)
T 2odp_A 6 RSGHLNLYLLLDASQSVSEN-DFLIFKESASLMVDRIFSFEIN--VSVAIITFASEPKVLM------------------- 63 (509)
T ss_dssp SSSEEEEEEEEECSTTSCHH-HHHHHHHHHHHHHHHHHTTCCC--EEEEEEEESSSEEEEE-------------------
T ss_pred CCCCeeEEEEEeCCCccchh-hHHHHHHHHHHHHHHhhccCCC--ceEEEEEccCCCceeE-------------------
Confidence 44678899999999864332 3678889999888776 444 4999999998765421
Q ss_pred CCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC----C----------CEEEEEecCCC
Q psy12437 388 FLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT----G----------GRITIFQTCLP 453 (901)
Q Consensus 388 f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~----G----------GrI~~F~~g~p 453 (901)
|+.. .....++.+...|+.|..... .....+.++.||..|..+|+.. | ..|+++++|.+
T Consensus 64 --~l~~----~~~~~~~~~~~~l~~l~~~~~-~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~ 136 (509)
T 2odp_A 64 --SVLN----DNSRDMTEVISSLENANYKDH-ENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKS 136 (509)
T ss_dssp --CTTS----GGGGCHHHHHHHHHTCCGGGG-TTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCC
T ss_pred --eccC----CCCCCHHHHHHHHHhcccccC-CCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCc
Confidence 1000 011134566677788853211 1146789999999999988431 1 35799999988
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH-----HhhCCcEEEEEEecCCccCchhhhhccccCCce--EEE
Q psy12437 454 NRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALE-----CTSFYIAVDLFILNSQYVDLATLSGVSKFSSGC--IHH 526 (901)
Q Consensus 454 t~GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~-----~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~--v~~ 526 (901)
+.|. .. .+.-+.+... +.+.||.|..+.+..+..+..+|..++..+||. +++
T Consensus 137 ~~~~-~~--------------------~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~ 195 (509)
T 2odp_A 137 NMGG-SP--------------------KTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFI 195 (509)
T ss_dssp CSSS-CT--------------------HHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEE
T ss_pred cCCC-Ch--------------------hHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEE
Confidence 8752 10 0111111111 116677777777765558999999999999998 666
Q ss_pred eCCC
Q psy12437 527 IPLY 530 (901)
Q Consensus 527 y~~f 530 (901)
.+++
T Consensus 196 ~~~~ 199 (509)
T 2odp_A 196 LQDT 199 (509)
T ss_dssp ESSH
T ss_pred ecCH
Confidence 5554
No 24
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.13 E-value=2.3e-07 Score=113.01 Aligned_cols=13 Identities=0% Similarity=0.084 Sum_probs=0.0
Q ss_pred cCCCCCChhHHHH
Q psy12437 723 RIGQSTRLDDRLF 735 (901)
Q Consensus 723 ~~~~~~s~Der~~ 735 (901)
..++|..||+-+|
T Consensus 601 ~GDFNs~P~s~~~ 613 (727)
T 4b8c_D 601 CGDFNSYINSAVY 613 (727)
T ss_dssp -------------
T ss_pred ecccCCCCCCcce
Confidence 3444555555443
No 25
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.11 E-value=4.1e-05 Score=88.87 Aligned_cols=169 Identities=17% Similarity=0.227 Sum_probs=107.5
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
|.-.+||||+|.+... ..++.++++++..++.++. ..+.+||||+|++..++.- ++.+
T Consensus 1 ~~div~vlD~SgSM~~-~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~--------------~~~~------ 59 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGA-SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSE------ 59 (497)
T ss_dssp CEEEEEEEECSTTTCH-HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE--------------CTTS------
T ss_pred CeeEEEEEECCCCcch-hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee--------------cccc------
Confidence 3458999999986432 3477888888888876543 2234999999998665421 1111
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----------CCCEEEEEecCCCCCCCCccc
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----------TGGRITIFQTCLPNRGPGALQ 461 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----------~GGrI~~F~~g~pt~GpG~l~ 461 (901)
+....++.+...|+.|.... ......+.+|.||..|..++.. ....|+++++|.++.|....
T Consensus 60 -----~~~~~~~~~~~~l~~l~~~~-~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~- 132 (497)
T 1rrk_A 60 -----ADSSNADWVTKQLNEINYED-HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPI- 132 (497)
T ss_dssp -----GGGGCHHHHHHHHHHCCGGG-SCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTH-
T ss_pred -----ccccCHHHHHHHHHhCcCcc-ccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChh-
Confidence 11223566777888886321 1124578999999999999842 22468889999988764111
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHH---------HHhhCCcEEEEEEecCCccCchhhhhccccCCc--eEEEeCCC
Q psy12437 462 SRENPNQRSNDDPPHMNPATDFYKKIAL---------ECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG--CIHHIPLY 530 (901)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~a~~fY~~la~---------~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG--~v~~y~~f 530 (901)
...+.+.. .+.+.||.|..+.+. +.+|..+|..++..+|| .++..+++
T Consensus 133 --------------------~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG-~~~~~~~L~~iA~~~~g~~~~~~~~~~ 191 (497)
T 1rrk_A 133 --------------------TVIDEIRDLLYIGKDRKNPREDYLDVYVFGVG-PLVNQVNINALASKKDNEQHVCKVKDM 191 (497)
T ss_dssp --------------------HHHHHHHHHTTCSSCC-CCCGGGEEEEEEECS-SSCCHHHHHHHSCCCTTCCCEEETTCH
T ss_pred --------------------HHHHHHHHHhhhhcccccchhcCeeEEEecCC-CccCHHHHHHHhcCCCCcceEEEeCCH
Confidence 11111111 122336666666554 33788999999999999 77777654
Q ss_pred C
Q psy12437 531 S 531 (901)
Q Consensus 531 ~ 531 (901)
+
T Consensus 192 ~ 192 (497)
T 1rrk_A 192 E 192 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.11 E-value=1.9e-07 Score=93.89 Aligned_cols=176 Identities=14% Similarity=0.192 Sum_probs=104.4
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcC-CCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM-PGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~l-p~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
.|..++||||+|.+.. ...++.+++++...++.+ +.+. +||+|+|++... +..+|.
T Consensus 4 ~~~~vv~vlD~SgSM~-~~~~~~~k~~~~~~~~~~~~~~~--~v~lv~f~~~~~--------------------~~~~~~ 60 (189)
T 2x31_A 4 SDRVLIFAVDASGSAA-VARLSEAKGAVELLLGRAYAARD--HVSLITFRGTAA--------------------QVLLQP 60 (189)
T ss_dssp SCCEEEEEEECCTTSC-C--CHHHHHHHHHHHHHSCTTTS--CCCEEEESBSCC--------------------CBCTTT
T ss_pred CCeEEEEEEECCCCCC-chHHHHHHHHHHHHHHHhcCCCc--EEEEEEECCCCc--------------------eEecCC
Confidence 5678999999998642 235778889999888776 5444 899999986210 011221
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC-----CCEEEEEecCCCCCCCCcccCCCCC
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-----GGRITIFQTCLPNRGPGALQSRENP 466 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GGrI~~F~~g~pt~GpG~l~~~~~~ 466 (901)
. .....+...|+.|.. ...+.++.||..|..++... ...|+++++|.++.|.+.-...++.
T Consensus 61 ~--------~~~~~~~~~i~~l~~------~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~ 126 (189)
T 2x31_A 61 S--------RSLTQTKRQLQGLPG------GGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELA 126 (189)
T ss_dssp C--------SCHHHHHHHHHHCCC------CBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGG
T ss_pred C--------CCHHHHHHHHhcCCC------CCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccch
Confidence 1 123445666777742 35688999999999988652 3488889999999875310000000
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHH
Q psy12437 467 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 546 (901)
Q Consensus 467 ~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~ 546 (901)
. .+. .+++..+.+.||.|..+.+... +...|..++..|||..++.++ ...+.|.+.+.
T Consensus 127 ~----~~~----------~~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~~~~~------~~~~~~~~~~~ 184 (189)
T 2x31_A 127 G----EQA----------TKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPR------ATAHKMADVLG 184 (189)
T ss_dssp T----CCC----------EEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHH------HHHHHHHHHHH
T ss_pred h----HHH----------HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHhcCCeEEECCC------cchHHHHHHHH
Confidence 0 000 0111122334443333333322 677899999999998655432 23355655555
Q ss_pred H
Q psy12437 547 R 547 (901)
Q Consensus 547 ~ 547 (901)
+
T Consensus 185 ~ 185 (189)
T 2x31_A 185 A 185 (189)
T ss_dssp H
T ss_pred H
Confidence 4
No 27
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.11 E-value=2.3e-05 Score=78.87 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=94.3
Q ss_pred EEEEEEEcchhHHhhc----hHHHHHHHHHHHH----hcCCCCCCceEEEEEEccE-EEEEEcCCCCCCCceeeccCccc
Q psy12437 316 MYLFLLDVSQIAAQSG----YLYTVCEVLLNQL----KSMPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDD 386 (901)
Q Consensus 316 ~~vFvID~s~~a~~~g----~l~~~~~si~~~L----~~lp~~~~~~VglItfd~~-V~~y~l~~~~~~~~~~v~~dl~d 386 (901)
..+|+||+|....... .++..++++...+ +.-|++ +||||+|+.. .++
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d---~vGLV~fa~~~a~~-------------------- 60 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPEN---MCGLMTIGDNSPQV-------------------- 60 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTC---EEEEEECCTTSCCE--------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC---eEEEEEEcCCCcEE--------------------
Confidence 5799999998754322 4777777766544 334443 8999999752 211
Q ss_pred cCCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC-----CCEEEEEecCCCCCCCCccc
Q psy12437 387 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-----GGRITIFQTCLPNRGPGALQ 461 (901)
Q Consensus 387 ~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GGrI~~F~~g~pt~GpG~l~ 461 (901)
++|+......|...|+.+.. ...+++|.||..|..+|+.. +.||++|+++.-+.
T Consensus 61 ---------~~plT~d~~~i~~~L~~l~~------~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~------ 119 (192)
T 2x5n_A 61 ---------LSTLTRDYGKFLSAMHDLPV------RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE------ 119 (192)
T ss_dssp ---------EEEEESCHHHHHHHHTTCCC------CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS------
T ss_pred ---------ecCCCCCHHHHHHHHHcCCC------CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCC------
Confidence 11122234566777777642 24689999999999999763 35788888763111
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccC
Q psy12437 462 SRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS 520 (901)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~T 520 (901)
...-..++++.+.+.||.|+++.++.+.-+-. |..+++.+
T Consensus 120 ------------------~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 120 ------------------DEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp ------------------CHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred ------------------CchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 11225789999999999999999987765556 88887773
No 28
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.04 E-value=4.5e-07 Score=110.54 Aligned_cols=11 Identities=27% Similarity=0.087 Sum_probs=0.0
Q ss_pred eEEEEEecccc
Q psy12437 626 RRIRVHTLCLP 636 (901)
Q Consensus 626 rriRV~T~~l~ 636 (901)
+.++|.|.-+.
T Consensus 547 ~~l~V~ntHL~ 557 (727)
T 4b8c_D 547 DTIWAVTTHLH 557 (727)
T ss_dssp -----------
T ss_pred ceEEEEEeccc
Confidence 34445444443
No 29
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.03 E-value=7.4e-05 Score=74.16 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=100.4
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 393 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~ 393 (901)
|.-.+||||.|.+.- ..-++.+++.++..++.+. ....+||+|+|++.+++.- ++.
T Consensus 2 ~~divfvlD~S~Sm~-~~~~~~~k~~~~~~~~~l~-~~~~rv~vv~fs~~~~~~~--------------~l~-------- 57 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQ-PDEFQKILDFMKDVMKKCS-NTSYQFAAVQFSTSYKTEF--------------DFS-------- 57 (179)
T ss_dssp CEEEEEEEECBTTCC-HHHHHHHHHHHHHHHHHTT-TSSEEEEEEEESSSEEEEE--------------CHH--------
T ss_pred CccEEEEEeCCCCCC-HHHHHHHHHHHHHHHHHhC-CCCeEEEEEEECCceeEEE--------------cCc--------
Confidence 456899999997533 2236788889998888883 2346999999998765410 000
Q ss_pred CcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH-hhcC-CCC------EEEEEecCCCCCCCCcccCCCC
Q psy12437 394 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP-TGG------RITIFQTCLPNRGPGALQSREN 465 (901)
Q Consensus 394 ~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~-~GG------rI~~F~~g~pt~GpG~l~~~~~ 465 (901)
.. ..++.+..+++.|..+ ...+++|.||..|.. ++.. .|+ .|+++++|.++.|.- +
T Consensus 58 ----~~-~~~~~~~~~~~~i~~~-----~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-~----- 121 (179)
T 1mjn_A 58 ----DY-VKRKDPDALLKHVKHM-----LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN-I----- 121 (179)
T ss_dssp ----HH-HHHCCHHHHHTTCCCC-----CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-C-----
T ss_pred ----cc-CCHHHHHHHHHhcccC-----CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-h-----
Confidence 00 1122355667777542 247899999999985 6543 232 588899998775420 0
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCcc---CchhhhhccccCCc-eEEEeCCCCC
Q psy12437 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYV---DLATLSGVSKFSSG-CIHHIPLYSG 532 (901)
Q Consensus 466 ~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~---~l~~l~~l~~~TGG-~v~~y~~f~~ 532 (901)
+ .+.||.|-.+.+..+.. +..+|..++..+|| .+|+.++|..
T Consensus 122 -------------~------------~~~~i~i~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 122 -------------D------------AAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEK 167 (179)
T ss_dssp -------------G------------GGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGG
T ss_pred -------------H------------HHCCCEEEEEEccccccccccHHHHHHHhCCccHhcEEEeCCHHH
Confidence 0 23577666666554321 24789999999988 4788888774
No 30
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.81 E-value=0.00014 Score=88.70 Aligned_cols=181 Identities=16% Similarity=0.208 Sum_probs=110.0
Q ss_pred CCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy12437 311 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (901)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~ 389 (901)
+..+.-++||||.|.+.... -++.++++++..++.+.. ..+.|||||+|++.+.+.- ++.+.
T Consensus 240 ~~~~~div~vlD~SgSM~~~-~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~--------------~l~~~-- 302 (741)
T 3hrz_D 240 PSGSMNIYLVLDGSGSIGAS-DFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSEA-- 302 (741)
T ss_dssp TTCEEEEEEEEECSTTTCHH-HHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE--------------CTTSG--
T ss_pred CCCceeEEEEeccCCccccc-chHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeE--------------eeccc--
Confidence 45567799999999764322 377788888888877653 2346999999988654310 01000
Q ss_pred CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----CCC------EEEEEecCCCCCCCC
Q psy12437 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGG------RITIFQTCLPNRGPG 458 (901)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GG------rI~~F~~g~pt~GpG 458 (901)
-...++.+...|+.|.... ......+.+|.||..|..+|.. .++ .||++++|.+|.|..
T Consensus 303 ---------~~~~~~~~~~~i~~l~~~~-~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~ 372 (741)
T 3hrz_D 303 ---------DSSNADWVTKQLNEINYED-HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD 372 (741)
T ss_dssp ---------GGGCHHHHHHHHTTCCGGG-GSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSC
T ss_pred ---------CCcCHHHHHHHHHhccccc-ccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCC
Confidence 0113455667777775211 1135678999999999998831 122 488999999988742
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCce--EEEeCCCC
Q psy12437 459 ALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGC--IHHIPLYS 531 (901)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~--v~~y~~f~ 531 (901)
-....++ . .......+.++++.+.||.|..+.+.. .+|-.+|..|+..+||. +|..++|.
T Consensus 373 p~~~~~~-i-----------~~~~~~~~~a~~~~~~gi~i~~igvG~-~~~~~~L~~ia~~~~g~~~~~~~~~~~ 434 (741)
T 3hrz_D 373 PITVIDE-I-----------RDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKVKDME 434 (741)
T ss_dssp THHHHHH-H-----------HHHTTCSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEECBSSHH
T ss_pred chHHHHH-H-----------HHHhhcccccccccccCeeEEEEeCCC-cCCHHHHHHHhcCCCCcceEEEeCCHH
Confidence 1110000 0 000000112234455666666555543 48889999999999996 76666654
No 31
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.75 E-value=0.00059 Score=68.82 Aligned_cols=153 Identities=10% Similarity=0.085 Sum_probs=95.8
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p 390 (901)
..+.-.+||||.|...- ..-++.++++++..++.+.- ....+||+|+|++.++..- ++.+.
T Consensus 19 ~~~~DivfvlD~S~Sm~-~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~--------------~l~~~--- 80 (199)
T 3zqk_A 19 SMVLDVAFVLEGSDKIG-EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEY--------------PFSEA--- 80 (199)
T ss_dssp CCCCEEEEEEECCTTTC-HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEE--------------CTTSC---
T ss_pred CCCcCEEEEEECCCCCC-HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEE--------------ecCCc---
Confidence 34677899999997533 23377888999999988842 2346999999998766421 01000
Q ss_pred CCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHh-hcC-CCC------EEEEEecCCCCCCCCcccC
Q psy12437 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKL-LQP-TGG------RITIFQTCLPNRGPGALQS 462 (901)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~l-l~~-~GG------rI~~F~~g~pt~GpG~l~~ 462 (901)
..++.+...|+.|+.. ....+.+|.||..|... +.. .|+ .|+++++|.++-
T Consensus 81 ----------~~~~~~~~~i~~l~~~----gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d------- 139 (199)
T 3zqk_A 81 ----------QSKGDILQRLREIRYQ----GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASD------- 139 (199)
T ss_dssp ----------CCHHHHHHHHHHCCCC----CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSS-------
T ss_pred ----------CCHHHHHHHHHhCcCC----CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCch-------
Confidence 1234456667777521 12258899999999874 332 232 477788875321
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecC-CccCchhhhhccccCCceEEEeCCCCC
Q psy12437 463 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNS-QYVDLATLSGVSKFSSGCIHHIPLYSG 532 (901)
Q Consensus 463 ~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~-~~~~l~~l~~l~~~TGG~v~~y~~f~~ 532 (901)
+ . ++ . ..|| .+|++.- ...|..+|..++. +|..|+.++|+.
T Consensus 140 --~-v----~~---~---------------~~~v--~v~~iGiG~~~~~~~L~~iA~--~~~~~~~~~~~~ 181 (199)
T 3zqk_A 140 --E-I----KR---L---------------PGDI--QVVPIGVGPNANVQELERIGW--PNAPILIQDFET 181 (199)
T ss_dssp --C-C----CC---C---------------CTTE--EEEEEEESTTCCHHHHHHHHT--TSCCEEESCTTT
T ss_pred --H-H----HH---H---------------hCCC--EEEEEEcCCCCCHHHHHHHhC--CCceEEeCCHHH
Confidence 0 0 00 0 1455 4555543 3688899999997 566678888874
No 32
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.73 E-value=3.6e-05 Score=90.64 Aligned_cols=145 Identities=13% Similarity=0.150 Sum_probs=86.8
Q ss_pred cEEEEEEEcchhHHhh-----chHHHHHHHHHHHHhc---CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccc
Q psy12437 315 AMYLFLLDVSQIAAQS-----GYLYTVCEVLLNQLKS---MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDD 386 (901)
Q Consensus 315 p~~vFvID~s~~a~~~-----g~l~~~~~si~~~L~~---lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d 386 (901)
-..|||||+|....+. ..|+.+++++...+.. ...+. +||||+|++.-. ...+... .+.+.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D--~vGlv~f~~~~~----~~plt~d-----~~y~~ 76 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKD--EIALVLFGTDGT----DNPLSGG-----DQYQN 76 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCC--EEEEEEESCSSC----BSTTCTT-----TCSTT
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCC--EEEEEEEccCCC----CCccccc-----cCCCc
Confidence 4689999999865432 3688888998888873 33333 899999986531 1111000 00000
Q ss_pred cCCCCCCCcccchhh-hHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC------C-CEEEEEecCCCCCCCC
Q psy12437 387 IFLPSPENILVNLSE-CYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT------G-GRITIFQTCLPNRGPG 458 (901)
Q Consensus 387 ~f~p~~~~~lv~l~e-~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~------G-GrI~~F~~g~pt~GpG 458 (901)
.+ .+.++.. ....+..|-+.|. ......++|.||.+|..+|+.. + -||++||+|--+.|..
T Consensus 77 i~------vl~~l~~~~~~~l~~l~~~l~-----~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~ 145 (565)
T 1jey_B 77 IT------VHRHLMLPDFDLLEDIESKIQ-----PGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKS 145 (565)
T ss_dssp EE------EEEEEECCCHHHHHHHHTTCC-----CCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCT
T ss_pred eE------EeecCCCCCHHHHHHHHhhcc-----CCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHH
Confidence 00 1112211 1123333222242 1224678999999999999642 2 3799999886554311
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEE-EEEecC
Q psy12437 459 ALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVD-LFILNS 505 (901)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvd-lf~~s~ 505 (901)
-..++|+.+.+.||.|+ ++.+..
T Consensus 146 ------------------------~~~~~a~~l~~~gI~i~~vig~g~ 169 (565)
T 1jey_B 146 ------------------------QLDIIIHSLKKCDISLQFFLPFSL 169 (565)
T ss_dssp ------------------------THHHHHHHHHHTTEEEEEEESSCC
T ss_pred ------------------------HHHHHHHHHHhcCcEEEEEeccCC
Confidence 14688999999999999 665544
No 33
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.66 E-value=0.00042 Score=68.52 Aligned_cols=144 Identities=16% Similarity=0.116 Sum_probs=90.6
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
.+.-++||||+|.+.- ..-++.++++++..++.+... ...+||+|+|++.+++.- ++.+
T Consensus 16 ~~~divfvlD~SgSm~-~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~--------------~l~~----- 75 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIG-IQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQW--------------DLQS----- 75 (178)
T ss_dssp TCEEEEEEEECCTTTC-HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE--------------CTTS-----
T ss_pred CCeeEEEEEECCCCCC-HHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEE--------------eCCC-----
Confidence 3678999999997542 234778899999999888632 346999999998765310 0100
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhh-cC-CC------CEEEEEecCCCCCCCCcccCC
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL-QP-TG------GRITIFQTCLPNRGPGALQSR 463 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll-~~-~G------GrI~~F~~g~pt~GpG~l~~~ 463 (901)
+- .+.++.+...|+.|+. ....+.+|.||..|...| .. .| ..|+++++|.++.|.
T Consensus 76 ---~~---~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~------ 138 (178)
T 2xgg_A 76 ---PN---AVDKQLAAHAVLDMPY-----KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDF------ 138 (178)
T ss_dssp ---GG---GSCHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHH------
T ss_pred ---CC---ccCHHHHHHHHHhCCC-----CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCc------
Confidence 00 0134556667777752 234789999999999975 22 22 468888888765421
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhh
Q psy12437 464 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATL 513 (901)
Q Consensus 464 ~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l 513 (901)
-..+.+.++.+.||.|..+.+..+ +|-..|
T Consensus 139 -------------------~~~~~~~~l~~~gi~v~~igvG~~-~~~~~l 168 (178)
T 2xgg_A 139 -------------------RTVRAAKEIRELGGIVTVLAVGHY-VAAALV 168 (178)
T ss_dssp -------------------HHSHHHHHHHHTTCEEEEEECC---------
T ss_pred -------------------cHHHHHHHHHHCCCEEEEEEcCCc-CCHHHH
Confidence 135677788888987777766533 444433
No 34
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.51 E-value=0.00039 Score=62.39 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=60.2
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcccc
Q psy12437 753 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLF 832 (901)
Q Consensus 753 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~ 832 (901)
.|+||.++.- . ...-..++++.++|.++.+||||+|..||+|+|+.++..-
T Consensus 2 ~~rL~~v~g~---~--------~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~E------------------ 52 (104)
T 1kcq_A 2 VQRLFQVKGR---R--------VVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYE------------------ 52 (104)
T ss_dssp CCEEEEEEES---S--------SEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHH------------------
T ss_pred CcEEEEEECC---C--------cEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHH------------------
Confidence 3788888741 0 1112346689999999999999999999999999887643
Q ss_pred cCCCCchHHHHHHHHHHHHHhh-cCCCcccEEEEeCCCccHHHHHHHh
Q psy12437 833 ELPQLETQLSLKLNSFISYLND-DKAYVSPVKVIKDSSPDRMEFYDKL 879 (901)
Q Consensus 833 ~lp~~d~~~s~~~~~~i~~l~~-~r~~~~p~~iv~~~~~~~~~f~~~L 879 (901)
-.+...+.+.++. .|....++.+|.++... ..|...|
T Consensus 53 ---------k~~A~~~a~~i~~~er~~~~~i~~v~eG~E~-~~Fw~~L 90 (104)
T 1kcq_A 53 ---------RLKATQVSKGIRDNERSGRARVHVSEEGTEP-EAMLQVL 90 (104)
T ss_dssp ---------HHHHHHHHHHHHHHTSTTCSEEEEEETTCCC-HHHHHHH
T ss_pred ---------HHHHHHHHHHHHhhccCCCCcEEEEeCCCCC-HHHHHHc
Confidence 2233444445542 34344688899887754 4676666
No 35
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.47 E-value=0.00021 Score=90.19 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=106.5
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSP 392 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y-~l~~~~~~~~~~v~~dl~d~f~p~~ 392 (901)
+.-.+||||.|... ...-++.++++++..++.+..+ +.+||||+|++.+++. .+.. ..+.+
T Consensus 130 ~~DIvfvlD~SgSm-~~~~f~~~k~fv~~lv~~~~~~-~~rVglV~Fs~~~~~~~~lt~---------~~~~~------- 191 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSI-SSRNFATMMNFVRAVISQFQRP-STQFSLMQFSNKFQTHFTFEE---------FRRSS------- 191 (1095)
T ss_dssp CEEEEEEEECCTTS-CSHHHHHHHHHHHHHHHSSCSS-SEEEEEEEESSSEEEEECSHH---------HHSCS-------
T ss_pred CccEEEEEcCCCCC-ChhHHHHHHHHHHHHHHhcccc-ccEEEEEEECCeEEEEecCcc---------cCCHH-------
Confidence 56689999999753 3334788999999999998743 4799999998876542 1110 00100
Q ss_pred CCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhh-c-CCCC------EEEEEecCCCCCCCCcccCCC
Q psy12437 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL-Q-PTGG------RITIFQTCLPNRGPGALQSRE 464 (901)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll-~-~~GG------rI~~F~~g~pt~GpG~l~~~~ 464 (901)
.+..+++.|... ...+.+|.||..|...+ . ..|+ .||++++|.++..+.
T Consensus 192 ------------~l~~ai~~i~~~-----gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~------ 248 (1095)
T 3k6s_A 192 ------------NPLSLLASVHQL-----QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL------ 248 (1095)
T ss_dssp ------------CGGGGTTTCCCC-----CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSS------
T ss_pred ------------HHHHHHhhhhcc-----cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCch------
Confidence 111223444321 34689999999998744 3 2333 478888887642110
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc---cCchhhhhccccCCc-eEEEeCCCCC
Q psy12437 465 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY---VDLATLSGVSKFSSG-CIHHIPLYSG 532 (901)
Q Consensus 465 ~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~---~~l~~l~~l~~~TGG-~v~~y~~f~~ 532 (901)
-+.+.+.++.+.||.|-.+.+..++ ++..+|..++..++| .++..++|..
T Consensus 249 ------------------~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 249 ------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp ------------------CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred ------------------hHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 1457777888888877666666552 689999999999887 6777777763
No 36
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=97.25 E-value=0.00078 Score=75.20 Aligned_cols=109 Identities=13% Similarity=0.188 Sum_probs=61.8
Q ss_pred hcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCccc
Q psy12437 752 IYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETL 831 (901)
Q Consensus 752 iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~ 831 (901)
..|+||.+.+- . |.+......+++.+.|.++.+||||+|..||||+|+.+++.-.+.
T Consensus 281 ~~~rLf~~s~~--~-------G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~Er~~-------------- 337 (398)
T 3fg7_A 281 ITPRLFECSNK--T-------GRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKA-------------- 337 (398)
T ss_dssp CCCEEEEEECT--T-------SSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHHHHH--------------
T ss_pred ccCeeEEEEcC--C-------CCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHHHHH--------------
Confidence 47999998741 1 111111122588999999999999999999999999988653210
Q ss_pred ccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCccHHHHHHHhc---ccCCCCCCCHHHH
Q psy12437 832 FELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLI---EDKNAGGMAYYEF 893 (901)
Q Consensus 832 ~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~Lv---ED~~~~~~Sy~~f 893 (901)
.-+....+|+.....|+...|+.+|.+|.... .|....- .++.....||.++
T Consensus 338 ---------Al~~A~~yi~~~~~~r~~~tpi~~V~eG~Ep~-~Fk~~F~~Wd~~~~~~~~~~~~~ 392 (398)
T 3fg7_A 338 ---------AATTAQEYLKTHPSGRDPETPIIVVKQGHEPP-TFTGWFLAWDPFKWSGIHVVPNL 392 (398)
T ss_dssp ---------HHHHHHHHHHHSSSSCCTTCCEEEEETTCCCH-HHHTTSSCCCTTCC---------
T ss_pred ---------HHHHHHHHHHhCcccCCCCCCEEEEcCCCCCH-HHHHhhhcCChhhhcccCCHHHh
Confidence 01123334433333444457999999866433 4544442 3344566888775
No 37
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=97.18 E-value=0.00061 Score=62.15 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=58.4
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcccc
Q psy12437 753 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLF 832 (901)
Q Consensus 753 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~ 832 (901)
.|+||.+..- . + ..-..++++.++|.++.+||||+|..||+|+|+..+..-
T Consensus 12 ~~rL~~v~G~--~-----~----~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~E------------------ 62 (114)
T 1svq_A 12 KPRLLHISGD--K-----N----AKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQE------------------ 62 (114)
T ss_dssp CEEEEEEECT--T-----S----CEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHHH------------------
T ss_pred CcEEEEEECC--C-----c----EEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHH------------------
Confidence 5799988731 0 0 111246689999999999999999999999999887643
Q ss_pred cCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCc-cHHHHHHHh
Q psy12437 833 ELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSP-DRMEFYDKL 879 (901)
Q Consensus 833 ~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~-~~~~f~~~L 879 (901)
-.+.+.+...|...|.....+.||.++.. ....|...|
T Consensus 63 ---------k~~A~~~a~~i~~er~g~~~i~vv~eg~~~E~~~Fw~~L 101 (114)
T 1svq_A 63 ---------KNKAAEVARAIDAERKGLPKVEVFCETDSDIPAEFWKLL 101 (114)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCSEEEECCCCTTCCCHHHHHHH
T ss_pred ---------HHHHHHHHHHhhhccCCCccEEEEeCCCcCCcHHHHHHc
Confidence 12333444444333333357788887763 234676655
No 38
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=96.76 E-value=0.0031 Score=69.27 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=57.8
Q ss_pred hcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCccc
Q psy12437 752 IYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETL 831 (901)
Q Consensus 752 iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~ 831 (901)
..|+||.+.+- .+...+. ++ + -+++.+.|.++.+||||+|..||||+|+.++..-.+.
T Consensus 227 ~~~rLf~~s~~--~G~~~v~--ev--~--~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~er~~-------------- 284 (344)
T 2fh1_A 227 HPPRLFACSNK--IGRFVIE--EV--P--GELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTE-------------- 284 (344)
T ss_dssp CCCEEEEEECT--TSSCEEE--EE--C--SSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHH--------------
T ss_pred cCCEEEEEEcC--CCCEEEE--Ec--c--CCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHH--------------
Confidence 57999998741 1111111 11 1 1578999999999999999999999999988754211
Q ss_pred ccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCccHHHHHHHhc--ccCCCCCCCHHHHHHHH
Q psy12437 832 FELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKLI--EDKNAGGMAYYEFLLRI 897 (901)
Q Consensus 832 ~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~Lv--ED~~~~~~Sy~~fl~~l 897 (901)
.-+....+++.....|+...|+.+|.++.... .|..+.- +|..-...+|.+.+..|
T Consensus 285 ---------A~~~A~~y~~~~~~~r~~~t~i~~V~eG~Ep~-~Fk~~F~~W~~~~~~~~~~~~~~~~~ 342 (344)
T 2fh1_A 285 ---------ALTSAKRYIETDPANRDRRTPITVVKQGFEPP-SFVGWFLGWDDDYWSVDPLDRAMAEL 342 (344)
T ss_dssp ---------HHHHHHHHHHTC-------CCEEEEETTCCCH-HHHTTSSSCCTTCC------------
T ss_pred ---------HHHHHHHHHHhCccCCCCCCcEEEEcCCCCCH-HHHHHHhhcChhhcCCChHHHHHHHh
Confidence 01122233333222455568999999876433 4554442 22222224676655443
No 39
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.68 E-value=0.016 Score=68.68 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=90.1
Q ss_pred cEEEEEEEcchhHHhh------chHHHHHHHHHHHHhc----CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCc
Q psy12437 315 AMYLFLLDVSQIAAQS------GYLYTVCEVLLNQLKS----MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDI 384 (901)
Q Consensus 315 p~~vFvID~s~~a~~~------g~l~~~~~si~~~L~~----lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl 384 (901)
=..||+||+|....+. ..|+.+++.+...+.. -+.+ +||||.|++.-+ .+.+.-...++..++
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D---~vGlVlfgt~~t----~n~l~~d~i~v~~~L 108 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRD---LLAVVFYGTEKD----KNSVNFKNIYVLQEL 108 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCC---EEEEEEESCSSC----BSTTCCTTEEEEEEE
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCC---eEEEEEEccCCC----CCcCCCCCeEEEecC
Confidence 4589999999765442 2688888888888863 4544 899999988642 111111222333222
Q ss_pred cccCCCCCCCcccchhhhHHHHHHHHH-----hCCccccCCCCCCCcHHHHHHHHHHhhcCC-----CCEEEEEecCCCC
Q psy12437 385 DDIFLPSPENILVNLSECYDMIVDLLK-----QLPGKFKDSLDSGSALGPALQAAFKLLQPT-----GGRITIFQTCLPN 454 (901)
Q Consensus 385 ~d~f~p~~~~~lv~l~e~~~~i~~lL~-----~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GGrI~~F~~g~pt 454 (901)
+.+ +. +....|..+++ .....++ ....+++|.||.+|..+++.. .=+|++||+|--+
T Consensus 109 ~~~----------~~-~~ik~l~~l~~~~~~~~~~~~~g--~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p 175 (609)
T 1jey_A 109 DNP----------GA-KRILELDQFKGQQGQKRFQDMMG--HGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNP 175 (609)
T ss_dssp ECC----------CH-HHHHHHHTTSHHHHHHHHHHHHC--CSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCT
T ss_pred CCC----------CH-HHHHHHHHHhhcccchhhhhhcC--CCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCC
Confidence 211 00 00011111111 0001111 135689999999999999764 2388999997644
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCC
Q psy12437 455 RGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ 506 (901)
Q Consensus 455 ~GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~ 506 (901)
.|-. .....-...+|+.+.+.||.|.+|.++.+
T Consensus 176 ~~~~-------------------~~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 176 HGND-------------------SAKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp TTTC-------------------HHHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred CCCc-------------------hHHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 4210 01112357889999999999999988654
No 40
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=96.42 E-value=0.0034 Score=69.51 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=40.0
Q ss_pred hcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHHH
Q psy12437 752 IYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAIC 815 (901)
Q Consensus 752 iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~ 815 (901)
.-|+||.+.+- .+...+. ++ + -+++.+.|.++.+||||+|..||||+|+.+++.-.
T Consensus 268 ~~~rLf~~s~~--~G~~~v~--ev--~--~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~~Er 323 (371)
T 3fg6_A 268 HPPRLYGCSNK--TGRFVIE--EI--P--GEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEK 323 (371)
T ss_dssp SCCEEEEEECT--TSSCEEE--EC--C--SSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHH
T ss_pred cCcEEEEEEcC--CCcEEEE--Ee--c--ccccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHH
Confidence 35899988741 1111111 11 1 24889999999999999999999999999887643
No 41
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=95.78 E-value=0.018 Score=69.44 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=67.8
Q ss_pred hhhcceeeecccCCCCCCcccCCCccccCccc-cccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCC
Q psy12437 750 LSIYPELYPIHTLDQDPTIEWNELQVPIPRIL-QLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMP 828 (901)
Q Consensus 750 ~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l-~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~ 828 (901)
....|+||.+.+- . |.+...... +++.+.|.++.|||||+|..||||+|+.++..-.+..
T Consensus 610 ~~~~~rLf~~s~~--~-------G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~er~~a---------- 670 (729)
T 1d0n_A 610 DAHPPRLFACSNK--I-------GRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEA---------- 670 (729)
T ss_dssp HHSCCEEEEEECT--T-------TCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCHHHHSSH----------
T ss_pred cccCCeEEEEEcC--C-------CcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHH----------
Confidence 3568999999741 1 111111112 5788999999999999999999999999876542110
Q ss_pred cccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCccHHHHHHHh--cccCCCCCCCHHHHHHH
Q psy12437 829 ETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFYDKL--IEDKNAGGMAYYEFLLR 896 (901)
Q Consensus 829 ~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~~~~~f~~~L--vED~~~~~~Sy~~fl~~ 896 (901)
-+.....++.....|+...|+.+|.++.... .|..+. -+|..-..-||.+.-..
T Consensus 671 -------------l~~A~~Y~~~~~~~r~~~~pi~~V~~G~Ep~-~F~~~F~~Wd~~~~~~~~~~~~~~~ 726 (729)
T 1d0n_A 671 -------------LTSAKRYIDTDPAHRDRRTPITVVKQGFEPP-SFVGWFLGWDDSYWSVDPLDRALAE 726 (729)
T ss_dssp -------------HHHHHHHHHHCTTCCCTTCCEEEEETTCCCH-HHHTTCTTCCGGGGTSCHHHHHHHH
T ss_pred -------------HHHHHHHHHhCcccCCCCCcEEEEeCCCCCH-HHHhhhhhcCccccCCccHHHHHHh
Confidence 0122333333334555558999999876543 344443 12222122446665443
No 42
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=95.69 E-value=0.017 Score=70.79 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=80.8
Q ss_pred CCCcEEEEEEEcchhHHhhc-----hHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEE---EEcCCCCCCCceeeccC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSG-----YLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHF---YSLAEGQTQPSQMILTD 383 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g-----~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~---y~l~~~~~~~~~~v~~d 383 (901)
..|.-.|||||+|.+..... .++.++++++..|+.|....+.|||||+|++.+.. ..+..+.....-....|
T Consensus 222 ~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~ 301 (893)
T 2ww8_A 222 SVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLND 301 (893)
T ss_dssp TCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECC
T ss_pred CCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcccccccccccccccccccccccc
Confidence 46788999999998654332 36778888888887764433459999999986532 11110000000000000
Q ss_pred -----ccc-cCCCCCCCc-ccchhhhHHHHHHHHHhCCcccc---C----CCCCCCcHHHHHHHHHHhhcC--C-C--CE
Q psy12437 384 -----IDD-IFLPSPENI-LVNLSECYDMIVDLLKQLPGKFK---D----SLDSGSALGPALQAAFKLLQP--T-G--GR 444 (901)
Q Consensus 384 -----l~d-~f~p~~~~~-lv~l~e~~~~i~~lL~~L~~~~~---~----~~~~~~~~G~AL~~A~~ll~~--~-G--Gr 444 (901)
.+. .|.....+| .+++....+.|..+...|...-. . .....+.+|.||..|..+|+. . + ..
T Consensus 302 ~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kv 381 (893)
T 2ww8_A 302 SLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKV 381 (893)
T ss_dssp CTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEE
T ss_pred ccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeE
Confidence 000 000000111 23444444455555555543111 0 124578999999999999963 1 2 35
Q ss_pred EEEEecCCCCCCC
Q psy12437 445 ITIFQTCLPNRGP 457 (901)
Q Consensus 445 I~~F~~g~pt~Gp 457 (901)
||++++|.|+.+.
T Consensus 382 IILLTDG~pt~~~ 394 (893)
T 2ww8_A 382 IFHITDGVPTMSY 394 (893)
T ss_dssp EEEEESSCCSEEC
T ss_pred EEEEcCCCCCccc
Confidence 8888899999653
No 43
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=95.56 E-value=0.03 Score=61.41 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=55.4
Q ss_pred hcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCC--ceEEEEecCCCChHHHhcccCCCCcCCCCc
Q psy12437 752 IYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMP--DLIIILVRHGTSPAICSGLFGFQSVAQMPE 829 (901)
Q Consensus 752 iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g--~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~ 829 (901)
..|+||.+.+- .+..... ++ +...+++.+.|.++.+||||+| ..||||+|+.+++.-.+.
T Consensus 246 ~~~rLy~vs~~--~G~~~v~--ev--~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er~~------------ 307 (347)
T 1j72_A 246 QAAALYKVSDA--TGQMNLT--KV--ADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQA------------ 307 (347)
T ss_dssp CCCEEEEEECT--TSSCEEE--EE--ECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHHHH------------
T ss_pred cCCEEEEEECC--CCCEEEE--ee--ccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHHHH------------
Confidence 37999999741 1111110 01 1112689999999999999999 999999999988654210
Q ss_pred ccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCc
Q psy12437 830 TLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSP 870 (901)
Q Consensus 830 ~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~ 870 (901)
.-+....+++. ..|+-..|+.+|.++..
T Consensus 308 -----------A~~~A~~y~~~--~~rp~~~~i~~v~eG~E 335 (347)
T 1j72_A 308 -----------ALQVAEGFISR--MQYAPNTQVEILPQGRE 335 (347)
T ss_dssp -----------HHHHHHHHHHH--HTCCTTCEEEEEETTCC
T ss_pred -----------HHHHHHHHHHh--cCCCCCCeEEEEcCCCC
Confidence 01122233332 24545689999998764
No 44
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=95.45 E-value=3.7 Score=46.05 Aligned_cols=299 Identities=14% Similarity=0.133 Sum_probs=146.5
Q ss_pred CCCcEEEEEEEcchhHHhh-chHHHHHHHHHHHHhcCCCCCCceEEEEEEccE-EEEEEcCCCCCCCceeeccCccccC-
Q psy12437 312 PQPAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIF- 388 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~-g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~-V~~y~l~~~~~~~~~~v~~dl~d~f- 388 (901)
..|-=.+|++|+|.+..+. .-++.+...|...|..+-.+ -||||..|-+. |.-|- ...|.. ++..+-
T Consensus 109 ~ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~--~riGfgsFvDk~v~P~~----~~~p~~----~l~nPc~ 178 (472)
T 3t3p_B 109 DYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSN--LRIGFGAFVDKPVSPYM----YISPPE----ALENPCY 178 (472)
T ss_dssp SCCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSC--EEEEEEEECCCSSTTTS----CCCSHH----HHHCTTT
T ss_pred CCCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcC--cEEEEEEeeccccCccc----cCChhh----hhcCCCc
Confidence 3467789999999764331 12333445555555555444 49999999443 21110 000110 011110
Q ss_pred ------C-CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHH--Hhhc--CCCCEEEEEecCCCC--C
Q psy12437 389 ------L-PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAF--KLLQ--PTGGRITIFQTCLPN--R 455 (901)
Q Consensus 389 ------~-p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~--~ll~--~~GGrI~~F~~g~pt--~ 455 (901)
. |..-+..+++.+..+.+.+.+..+. ...+...|+..+.+-+.+|+ .-+. ...-||+||++-.+- .
T Consensus 179 ~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~-iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~a 257 (472)
T 3t3p_B 179 DMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS-VSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257 (472)
T ss_dssp TTTSCCCCCCSEEEEEEEESCHHHHHHHHHHCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCT
T ss_pred ccccCCCCCcceeEeeccCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcC
Confidence 0 1111224677776677777787764 22445567777766666664 3333 234689998887775 5
Q ss_pred CCCcccCCCCCCCC-CC-CCCCCCCchHH----HHHHHHHHHhhCCcEEEEEEecCCccCchhhhhcccc-CCceEEEeC
Q psy12437 456 GPGALQSRENPNQR-SN-DDPPHMNPATD----FYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF-SSGCIHHIP 528 (901)
Q Consensus 456 GpG~l~~~~~~~~~-~~-~~~~~~~~a~~----fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~-TGG~v~~y~ 528 (901)
|-|++...-.++.. -| +....+..+.. -...|+..+.+++|.+ ||+.+....++.+ .|+.+ .|+.+-...
T Consensus 258 gDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y~--~L~~~ip~s~vg~L~ 334 (472)
T 3t3p_B 258 LDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLYQ--NYSELIPGTTVGVLS 334 (472)
T ss_dssp TGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEE-EEEECGGGHHHHH--HHHHTSTTCEEEECC
T ss_pred CCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccE-EEEEeccchhHHH--HHHHhCCCceeeecc
Confidence 88887654222210 11 11111122111 1457777788888644 8888776555432 23332 344444432
Q ss_pred CCCCCcchhHHHHHHHHHHhhhcccccceeEEEEe-cCCceEEE--EecceeccCCCceeecCCCCCceEEEEEEEeccc
Q psy12437 529 LYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHT--FHGNFFVRSTDLLALPNVNPDAGYGIQISIDENL 605 (901)
Q Consensus 529 ~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~-S~gl~i~~--~~G~~~~~~t~~~~l~~i~~~~s~~~~~~~~~~l 605 (901)
. +. .+.-.|..+-++.+. -.++|+... ..|++|.- .-++... .+..-...++....++.|.+++.-.-
T Consensus 335 ~-dS---sNiv~LI~~aY~~i~----s~V~l~~~~~p~~l~v~y~s~C~~~~~-~~~~~~C~~v~ig~~v~F~v~v~~~~ 405 (472)
T 3t3p_B 335 M-DS---SNVLQLIVDAYGKIR----SKVELEVRDLPEELSLSFNATCLNNEV-IPGLKSCMGLKIGDTVSFSIEAKVRG 405 (472)
T ss_dssp T-TS---TTHHHHHHHHHHHHT----TCEEEEEESCCTTEEEEEEEEETTTEE-EETCCEECSCCTTCEEEEEEEEEECS
T ss_pred c-cc---hhHHHHHHHHHHHhh----eEEEEeeCCCCCcEEEEEEeECCCCCc-cCCCccCCCcccCCEEEEEEEEEecc
Confidence 2 22 223455555544332 344555443 45666542 1222111 01112355666677777776665321
Q ss_pred C-CCceeEEEEEEEeeecCCCeEEEEEeccc
Q psy12437 606 T-HIQYACFQVAVLYTSSKGDRRIRVHTLCL 635 (901)
Q Consensus 606 ~-~~~~~~iQ~allYt~~~G~rriRV~T~~l 635 (901)
- ...... |.+.-...+-.-.|+|+.++-
T Consensus 406 C~~~~~~~--~~i~p~gf~e~l~v~v~~~C~ 434 (472)
T 3t3p_B 406 CPQEKEKS--FTIKPVGFKDSLIVQVTFDCD 434 (472)
T ss_dssp CCSSSEEE--EEEEETTCSCCEEEEEEECCS
T ss_pred CCCCCcee--EEEeecCCCceEEEEEeeccc
Confidence 1 111112 222222223345677777653
No 45
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.15 E-value=0.041 Score=56.41 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=60.7
Q ss_pred CCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy12437 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (901)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~ 391 (901)
.|.-+||+||+|.+.. +-+..++++++..+..+... .+.+||+|+|+.... . ...++.
T Consensus 133 ~~~~vvfLVDtSgSM~--~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~-------~---~~~ll~--------- 191 (242)
T 3rag_A 133 VALHLVVCLDTSASMR--DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGE-------E---ATRLVQ--------- 191 (242)
T ss_dssp SCEEEEEEEECSGGGT--TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTT-------C---SCEEEE---------
T ss_pred CCCCEEEEEECcccHH--HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCc-------c---ceeecC---------
Confidence 5778999999998653 46999999999999877532 356999999986410 0 000110
Q ss_pred CCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhc
Q psy12437 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQ 439 (901)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~ 439 (901)
+..... .+...+..|+ ....+.+|.||..|..+++
T Consensus 192 ------pfT~~~-~~~~~l~~L~------agG~Tplg~AL~~A~~~~~ 226 (242)
T 3rag_A 192 ------PFSSEV-NVAALEAELV------ARGGTPTGPAIDHAADLLL 226 (242)
T ss_dssp ------EEESSC-CHHHHHHHCC------CCSCCCHHHHHHHHHHHHH
T ss_pred ------CCCChH-HHHHHHhhCC------CCCCCcHHHHHHHHHHHHH
Confidence 111111 2334456663 2455669999999999885
No 46
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=95.04 E-value=0.63 Score=55.34 Aligned_cols=267 Identities=14% Similarity=0.141 Sum_probs=132.2
Q ss_pred CCCcEEEEEEEcchhHHhhchHHH---HHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCc-ccc
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYT---VCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDI-DDI 387 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~---~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl-~d~ 387 (901)
..|-=.+|++|+|.+... .++. +...|...|..+-.+. ||||..|-+... +......|. ++ ..+
T Consensus 109 ~~pvDly~LmD~S~SM~d--di~~lk~l~~~l~~~l~~~t~~~--r~Gfgsf~Dk~~---~P~~~~~p~-----~~~~~p 176 (690)
T 3fcs_B 109 DYPVDIYYLMDLSYSMKD--DLWSIQNLGTKLATQMRKLTSNL--RIGFGAFVDKPV---SPYMYISPP-----EALENP 176 (690)
T ss_dssp TCCEEEEEEEECSGGGHH--HHHHTTTTTHHHHHHHHHHCSCE--EEEEEEECCCSS---TTTSCCCST-----TTTTCT
T ss_pred CCCccEEEEecCCcchHH--HHHHHHHHHHHHHHHHHhhCcCc--eEEeEEeecccc---CCccccChh-----hhccCC
Confidence 346778999999976432 2333 3344555555554444 999999955431 011000111 11 111
Q ss_pred C-------C-CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHH--Hhhc--CCCCEEEEEecCCCC-
Q psy12437 388 F-------L-PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAF--KLLQ--PTGGRITIFQTCLPN- 454 (901)
Q Consensus 388 f-------~-p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~--~ll~--~~GGrI~~F~~g~pt- 454 (901)
- . |..-+-.+++.+....+.+.++.+. ...+...|+..+-+.+.+|+ .-+. ...-|||||++-.+-
T Consensus 177 c~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~-isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H 255 (690)
T 3fcs_B 177 CYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS-VSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTH 255 (690)
T ss_dssp TSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBC
T ss_pred CcCCCCCCCCCccceeecccCCCHHHHHHHhhcee-ccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccc
Confidence 1 1 1111223577766666777777664 22344566666666666663 3333 224589888887775
Q ss_pred -CCCCcccCCCCCCC-CCC-CCCCCCCchHHH----HHHHHHHHhhCCcEEEEEEecCCccCchhhhhcc-ccCCceEEE
Q psy12437 455 -RGPGALQSRENPNQ-RSN-DDPPHMNPATDF----YKKIALECTSFYIAVDLFILNSQYVDLATLSGVS-KFSSGCIHH 526 (901)
Q Consensus 455 -~GpG~l~~~~~~~~-~~~-~~~~~~~~a~~f----Y~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~-~~TGG~v~~ 526 (901)
.|-|++...-.++. .-| +....+..+..+ ...|+.++.+++|.+ ||+......++.+ .|+ ..+|+.+-.
T Consensus 256 ~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~-ifavt~~~~~~y~--~l~~~i~~s~v~~ 332 (690)
T 3fcs_B 256 IALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLYQ--NYSELIPGTTVGV 332 (690)
T ss_dssp CTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEE-EEEEEGGGHHHHH--HHHHHSTTCEEEE
T ss_pred cCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeE-EEEEeCCchhhHH--HHHhhcCCceeee
Confidence 47777654322221 011 111112222221 367888888888843 7776665555432 333 334555555
Q ss_pred eCCCCCCcchhHHHHHHHHHHhhhcccccceeEEEEe-cCCceEEEE--ecceeccCCCceeecCCCCCceEEEEEEEec
Q psy12437 527 IPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTF--HGNFFVRSTDLLALPNVNPDAGYGIQISIDE 603 (901)
Q Consensus 527 y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~-S~gl~i~~~--~G~~~~~~t~~~~l~~i~~~~s~~~~~~~~~ 603 (901)
... +. .+...+..+-++.+ .-.++|++.. .+|++|+-. -++... .+..-...++....++.|.+++.-
T Consensus 333 l~~-dS---sni~~li~~~y~~i----~s~v~l~~~~~p~~~~v~~~s~C~~~~~-~~~~~~C~~v~~g~~v~F~v~v~~ 403 (690)
T 3fcs_B 333 LSM-DS---SNVLQLIVDAYGKI----RSKVELEVRDLPEELSLSFNATCLNNEV-IPGLKSCMGLKIGDTVSFSIEAKV 403 (690)
T ss_dssp ECT-TC---TTHHHHHHHHHHHH----TTCEEEEEESCCTTEEEEEEEECSTTCE-EETCCEECSCCTTCEEEEEEEEEE
T ss_pred ecc-cc---HHHHHHHHHHHHhh----hcceeeeccCCCCcceEEEEeecCCCCc-ccCCCcccccccCCeEEEEEEEEe
Confidence 543 22 22344444444433 2344455443 456665432 111110 011113445666667777766654
No 47
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=94.81 E-value=0.049 Score=63.51 Aligned_cols=108 Identities=14% Similarity=0.189 Sum_probs=60.6
Q ss_pred CCCCcEEEEEEEcchhHHhh--c-hHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCcccc
Q psy12437 311 PPQPAMYLFLLDVSQIAAQS--G-YLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDI 387 (901)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~~--g-~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~ 387 (901)
++.+..++|+||+|.+.... | .+.....++...+..+..+. +||+|+|++.+..
T Consensus 365 ~~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d--~vglv~Fs~~~~~--------------------- 421 (538)
T 1yvr_A 365 EPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEK--DSHMVAFSDEMLP--------------------- 421 (538)
T ss_dssp CCCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCS--SEEEEEESSSEEC---------------------
T ss_pred CCCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCC--ceEEEEECCCceE---------------------
Confidence 45678899999999864321 1 12221111222222222233 7999999863211
Q ss_pred CCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCC
Q psy12437 388 FLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRG 456 (901)
Q Consensus 388 f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~G 456 (901)
+|...+ .. +..+++.|... ...++.+|.||..|... ......|+++++|..+.|
T Consensus 422 -~~~t~~--------~~-l~~~l~~l~~~----~~GgT~i~~aL~~a~~~-~~~~~~iIliTDg~~~~g 475 (538)
T 1yvr_A 422 -CPITVN--------ML-LHEVVEKMSDI----TMGSTDCALPMLWAQKT-NTAADIFIVFTDCETNVE 475 (538)
T ss_dssp -CSCCTT--------SC-HHHHHHHHTTC----CCSCCCTTHHHHHHHHT-TCCCSEEEEEECCCCCSS
T ss_pred -cCCCCc--------cc-HHHHHHHHhcC----CCCCCcHHHHHHHHHhc-cCCCCEEEEEcCCCCCCC
Confidence 111111 01 34445555432 23467888999999876 334578999999986654
No 48
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=94.65 E-value=1 Score=50.27 Aligned_cols=269 Identities=15% Similarity=0.163 Sum_probs=134.8
Q ss_pred CCCcEEEEEEEcchhHHhh-chHHHHHHHHHHHHhcCCCCCCceEEEEEEcc-EEEEEEcCCCCCCCceeeccCccccC-
Q psy12437 312 PQPAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDS-AVHFYSLAEGQTQPSQMILTDIDDIF- 388 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~-g~l~~~~~si~~~L~~lp~~~~~~VglItfd~-~V~~y~l~~~~~~~~~~v~~dl~d~f- 388 (901)
..|-=.+|++|+|.+..+. .-++.+...|...|..+-.+. ||||..|-+ .|.=|.- ..|. .+..+-
T Consensus 120 ~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~--riGfGsFvDK~v~P~~~----t~p~-----~~~nPC~ 188 (454)
T 3vi3_B 120 DYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDF--RIGFGSFVEKTVMPYIS----TTPA-----KLRNPCT 188 (454)
T ss_dssp CCCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSE--EEEEEEECCCSSTTTSC----CSTT-----TTTCCSC
T ss_pred CCceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCe--EEEEEEEeccccCCccc----CChH-----HhcCCCc
Confidence 3466689999999764331 124444455556666555444 999999844 3321110 0011 111110
Q ss_pred ----C--CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH--hhc-CCCCEEEEEecCCCC--CCC
Q psy12437 389 ----L--PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK--LLQ-PTGGRITIFQTCLPN--RGP 457 (901)
Q Consensus 389 ----~--p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~--ll~-~~GGrI~~F~~g~pt--~Gp 457 (901)
. |..-+-.+++.+....+...++.+. ...+...|+..+-+-+.+|+- -++ ...-||+||++-.+- .|-
T Consensus 189 ~~~~c~~~f~fr~~l~LT~d~~~F~~~V~~~~-isGn~D~PEgg~DAl~Qaavc~~~igWR~a~rllV~~TDa~fH~agD 267 (454)
T 3vi3_B 189 SEQNCTTPFSYKNVLSLTNKGEVFNELVGKQR-ISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGD 267 (454)
T ss_dssp SSSCCCCCCSEEEEEEEESCHHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTT
T ss_pred CccCCCCCcceeeeeecCCCHHHHHHHHhhcc-ccCCCcCCchhHHHHHHHhccccccCCccceEEEEEECCCCcCcCCC
Confidence 0 1111225677777677777777753 334456677777666666642 222 115689998887774 588
Q ss_pred CcccCCCCCCCC-CCCCCCCCCchHH----HHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccC-CceEEEeCCCC
Q psy12437 458 GALQSRENPNQR-SNDDPPHMNPATD----FYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS-SGCIHHIPLYS 531 (901)
Q Consensus 458 G~l~~~~~~~~~-~~~~~~~~~~a~~----fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~T-GG~v~~y~~f~ 531 (901)
|+|...-.++.. -|-+...+..+.. -...|+..+.+++|.+ ||+.+....++.+ .|+.+- |+.+-.... +
T Consensus 268 gkL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y~--~L~~~ip~s~vg~Ls~-d 343 (454)
T 3vi3_B 268 GKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPVYK--ELKNLIPKSAVGTLSA-N 343 (454)
T ss_dssp TGGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHHHH--HHHHHSTTEEEEEECT-T
T ss_pred ccccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchHHH--HHHHhCCCceeeEccc-c
Confidence 887654322210 1101111111111 1467888888888754 8888777665542 333332 333333322 2
Q ss_pred CCcchhHHHHHHHHHHhhhcccccceeEEEEe-cCCceEEEE--ecceec-cCCCceeecCCCCCceEEEEEEEec
Q psy12437 532 GKNMSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTF--HGNFFV-RSTDLLALPNVNPDAGYGIQISIDE 603 (901)
Q Consensus 532 ~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~-S~gl~i~~~--~G~~~~-~~t~~~~l~~i~~~~s~~~~~~~~~ 603 (901)
. .+.-.|..+-++.+. -.++|+... .+|++|.-. -++... .+...-...++....++.|..++.-
T Consensus 344 S---sNiv~LI~~aY~~i~----S~V~l~~~~~p~~l~v~y~s~C~~~~~~~~~~~~~C~~v~ig~~v~F~v~v~~ 412 (454)
T 3vi3_B 344 S---SNVIQLIIDAYNSLS----SEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITS 412 (454)
T ss_dssp C---TTHHHHHHHHHHHHH----TCEEEEECCCCTTEEEEEEEECGGGCEEEGGGGGEECCCCTTCEEEEEEEEEE
T ss_pred c---hhHHHHHHHHHHHhh----eEEEEecCCCCCceEEEEEeecCCCCccCCccCCCCCCccCCCEEEEEEEEEe
Confidence 1 223455554444332 333444333 446655421 111110 0111124555666777777766653
No 49
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=93.98 E-value=0.15 Score=55.84 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=58.8
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcccc
Q psy12437 753 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLF 832 (901)
Q Consensus 753 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~ 832 (901)
-++||.+..- . + + .-..++++.++|.++.+||||+|..||+|+|+..+..-
T Consensus 135 ~~rL~~v~G~---~----~---v-~~~eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~~E------------------ 185 (347)
T 1j72_A 135 VQRLYQVKGK---K----N---I-RATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILE------------------ 185 (347)
T ss_dssp EEEEEEEECS---S----S---C-EEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCHHH------------------
T ss_pred CcEEEEEECC---C----c---e-EEEEEeeeHHHcCCCceEEEecCCEEEEEECCCCCHHH------------------
Confidence 4789988631 0 0 1 11246688999999999999999999999999887654
Q ss_pred cCCCCchHHHHHHHHHHHHHhhc-CCCcccEEEEeCCCccHHHHHHHh
Q psy12437 833 ELPQLETQLSLKLNSFISYLNDD-KAYVSPVKVIKDSSPDRMEFYDKL 879 (901)
Q Consensus 833 ~lp~~d~~~s~~~~~~i~~l~~~-r~~~~p~~iv~~~~~~~~~f~~~L 879 (901)
-.+.+.+...|+.. |.-...+.+|.++... ..|...|
T Consensus 186 ---------r~~A~~~a~~i~~~~~~g~~~v~~v~EG~E~-~~Fw~~L 223 (347)
T 1j72_A 186 ---------RNKARDLALAIRDSERQGKAQVEIVTDGEEP-AEMIQVL 223 (347)
T ss_dssp ---------HHHHHHHHHHHHTTSCCSSCEEEEEETTCCC-HHHHHHH
T ss_pred ---------HHHHHHHHHHHHhhccCCCceEEEEeCCCCH-HHHHHHh
Confidence 23344455556532 2223457777776644 3677766
No 50
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=93.97 E-value=5.1 Score=45.20 Aligned_cols=274 Identities=16% Similarity=0.137 Sum_probs=134.2
Q ss_pred CCCcEEEEEEEcchhHHhh-chHHHHHHHHHHHHhcCCCCCCceEEEEEEcc-EEEEEEcCCCCCCCceeec--cCcccc
Q psy12437 312 PQPAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDS-AVHFYSLAEGQTQPSQMIL--TDIDDI 387 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~-g~l~~~~~si~~~L~~lp~~~~~~VglItfd~-~V~~y~l~~~~~~~~~~v~--~dl~d~ 387 (901)
..|-=.+|++|+|.+..+. .-++.+...|...|..+-.+ -||||.+|-+ .|.=| ....|..+.- .+.++.
T Consensus 130 ~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~--~RiGfGsFvDK~v~P~----~~~~p~~l~~PC~~~~~~ 203 (503)
T 3v4v_B 130 GYPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHS--VRIGFGSFVDKTVLPF----VSTVPSKLRHPCPTRLER 203 (503)
T ss_dssp SCCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSC--EEEEEEEECCCSSTTT----SCCCHHHHHCCSSCSSSC
T ss_pred CCceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcC--cEEeeeeecccccCCc----ccCCHHHhcCCCcCCCCC
Confidence 3466789999999764431 12333444555555555444 4999999944 32111 0001111000 000000
Q ss_pred C-CCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHH--Hhhc-CCCCEEEEEecCCCC--CCCCccc
Q psy12437 388 F-LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAF--KLLQ-PTGGRITIFQTCLPN--RGPGALQ 461 (901)
Q Consensus 388 f-~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~--~ll~-~~GGrI~~F~~g~pt--~GpG~l~ 461 (901)
- -|..-+-.+++.+..+.+.+.+..+. ...+...|+..+.+-+.+|+ .-+. ....|++||++-.+- .|-|++.
T Consensus 204 c~p~f~fr~~l~LT~d~~~F~~~V~~~~-iSGnlD~PEggfDAlmQaavC~~~IgWR~a~rllV~~TDA~fH~agDgkLa 282 (503)
T 3v4v_B 204 CQSPFSFHHVLSLTGDAQAFEREVGRQS-VSGNLDSPEGGFDAILQAALCQEQIGWRNVSRLLVFTSDDTFHTAGDGKLG 282 (503)
T ss_dssp CCCCCSEEEEEEEESCSHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTGGGTT
T ss_pred CCCCcceEEEEEecCCHHHHHHHHhhcC-ccCCCCCCchHHHHHHHHhhcccccCCCcceEEEEEECCCCcCcCCCcccc
Confidence 0 01111124566666566666676653 22445567777766666664 2332 125699999887774 5888776
Q ss_pred CCCCCCC-CCC-CCCCCCCchHHH----HHHHHHHHhhCCcEEEEEEecCCccCchhhhhcccc-CCceEEEeCCCCCCc
Q psy12437 462 SRENPNQ-RSN-DDPPHMNPATDF----YKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF-SSGCIHHIPLYSGKN 534 (901)
Q Consensus 462 ~~~~~~~-~~~-~~~~~~~~a~~f----Y~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~-TGG~v~~y~~f~~~~ 534 (901)
..-.++. .-| +....+..+..+ ...|+..+.+++|. =||+.+....++.+ .|+.+ .|+.+-.... +.
T Consensus 283 GIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~-~IFAVt~~~~~~Y~--~L~~~ip~s~vg~Ls~-dS-- 356 (503)
T 3v4v_B 283 GIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQ-PIFAVTSAALPVYQ--ELSKLIPKSAVGELSE-DS-- 356 (503)
T ss_dssp TCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEE-EEEEECSSSHHHHH--HHHTTSTTCEEEECCT-TS--
T ss_pred ceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCe-EEEEEcccchhHHH--HHHHhCCCceeeEccc-cc--
Confidence 5422221 012 111122222221 45677777888874 47888877665543 33333 3444444332 22
Q ss_pred chhHHHHHHHHHHhhhcccccceeEEEEe-cCCceEEEE--eccee-ccC--CCceeecCCCCCceEEEEEEEec
Q psy12437 535 MSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTF--HGNFF-VRS--TDLLALPNVNPDAGYGIQISIDE 603 (901)
Q Consensus 535 ~~~~~~~~~dl~~~l~~~~g~~a~l~vr~-S~gl~i~~~--~G~~~-~~~--t~~~~l~~i~~~~s~~~~~~~~~ 603 (901)
.+.-.|..+-++.+. -.++|+... .+|++|.-. -++.. ..+ ...-+..++....++.|.+++.-
T Consensus 357 -sNiv~LI~~aY~~i~----S~V~l~~~~~p~~l~v~y~s~C~~~~~~~~~~~~~~~C~~v~ig~~v~F~v~v~~ 426 (503)
T 3v4v_B 357 -SNVVQLIMDAYNSLS----STVTLEHSSLPPGVHISYESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQA 426 (503)
T ss_dssp -CTHHHHHHHHHHHHH----TCEEEECCCCCTTEEEEBCEECSSSCCCCCCCBSSEEECSCCTTCEEEEEEEEEE
T ss_pred -hhHHHHHHHHHHHhh----eEEEEecCCCCCceEEEEEEecCCCCccCcccccCCcccCcccCCEEEEEEEEEe
Confidence 223455554444332 233444333 456666522 11111 111 11234566777777777766653
No 51
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=92.57 E-value=0.27 Score=59.27 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=58.5
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcccc
Q psy12437 753 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLF 832 (901)
Q Consensus 753 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~ 832 (901)
.|+||.+..-. -..-..++++.++|.++.+||||+|..||+|.|+..+..-
T Consensus 133 ~~rL~~vkG~~-----------~v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s~~~E------------------ 183 (729)
T 1d0n_A 133 VQRLLQVKGRR-----------VVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFE------------------ 183 (729)
T ss_dssp CCEEEEEECSS-----------SCEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTCCHHH------------------
T ss_pred CcEEEEEECCC-----------cEEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCCCHHH------------------
Confidence 58999887310 0112346789999999999999999999999999877543
Q ss_pred cCCCCchHHHHHHHHHHHHHhh-cCCCcccEEEEeCCCccHHHHHHHh
Q psy12437 833 ELPQLETQLSLKLNSFISYLND-DKAYVSPVKVIKDSSPDRMEFYDKL 879 (901)
Q Consensus 833 ~lp~~d~~~s~~~~~~i~~l~~-~r~~~~p~~iv~~~~~~~~~f~~~L 879 (901)
-.+.+.+...|+. .|.....+.+|.++... ..|...|
T Consensus 184 ---------r~kA~~~a~~i~~~er~g~~~i~~v~Eg~e~-~eFw~~L 221 (729)
T 1d0n_A 184 ---------RLKATQVSKGIRDNERSGRAQVSVFEEGAEP-EAMLQVL 221 (729)
T ss_dssp ---------HHHHHHHHHHHHHHSGGGCSEEEEEETTCCC-HHHHHHH
T ss_pred ---------HHHHHHHHHHHhhhhcCCCccEEEecCCCCh-HHHHHHc
Confidence 2344455555553 22222456777766533 3677766
No 52
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=92.53 E-value=0.36 Score=57.25 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=103.4
Q ss_pred CCCcEEEEEEEcchhHHhh-chHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccC--
Q psy12437 312 PQPAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF-- 388 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~-g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f-- 388 (901)
..|-=.+|++|+|.+.... .-++.+...|...|..+-.+. ||||.+|-+..- +......| ..+..+-
T Consensus 102 ~ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~--r~GfgsFvDk~~---~P~~~~~p-----~~~~~Pc~~ 171 (687)
T 3k6s_B 102 GYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESG--RIGFGSFVDKTV---LPFVNTHP-----DKLRNPCPN 171 (687)
T ss_dssp CCCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSC--EEEEEEECCCSS---TTSSCCSS-----TTTTCCCCS
T ss_pred CCceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCc--EEeeEEeecccc---CCccccCc-----hhccCCCCC
Confidence 3467789999999764321 113333455666666665555 999999955321 01100011 1121111
Q ss_pred -----C-CCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHH--Hhhc-CCCCEEEEEecCCCC--CCC
Q psy12437 389 -----L-PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAF--KLLQ-PTGGRITIFQTCLPN--RGP 457 (901)
Q Consensus 389 -----~-p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~--~ll~-~~GGrI~~F~~g~pt--~Gp 457 (901)
. |..-+..+++.+....+.+.++.+. ...+...|+..+-+.+.||+ .-+. ...-|||||++-.+- .|-
T Consensus 172 ~~~~c~~~f~f~~~l~lt~~~~~F~~~v~~~~-isgn~D~PE~g~dAl~qa~vc~~~igWr~a~rllV~~TDa~~H~agD 250 (687)
T 3k6s_B 172 KEKECQPPFAFRHVLKLTNNSNQFQTEVGKQL-ISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDGFHFAGD 250 (687)
T ss_dssp CCCCCCCCCSCEEEEEEESCSHHHHHHHHTSC-CCCCSSSSCCHHHHHHHHTTCHHHHCCCSSCCEEEEECSSCCCCTTG
T ss_pred CCCCcCCcccceeecccCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHhhcccccCCccceEEEEEECCCccccCCC
Confidence 1 1111224567666666677777764 22344566666666666653 3332 125789998887775 477
Q ss_pred CcccCCCCCCCC-CCCCCCCCCchHHH----HHHHHHHHhhCCcEEEEEEecCCccCchhhhhcc-ccCCceEEEeC
Q psy12437 458 GALQSRENPNQR-SNDDPPHMNPATDF----YKKIALECTSFYIAVDLFILNSQYVDLATLSGVS-KFSSGCIHHIP 528 (901)
Q Consensus 458 G~l~~~~~~~~~-~~~~~~~~~~a~~f----Y~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~-~~TGG~v~~y~ 528 (901)
|+|...-.++.. -|-+...+..+..+ ...|+.++.+++|.+ ||+.....+++.+ .|+ ..+|+.+-...
T Consensus 251 g~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~I~~-ifavt~~~~~~y~--~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 251 GKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQP-IFAVTSRMVKTYE--KLTEIIPKSAVGELS 324 (687)
T ss_dssp GGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBC-CEEECGGGHHHHH--HHHHHSSSCCEEECC
T ss_pred ccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHHcCCeE-EEEEeccchhhHH--HHHhhcCCceeeeec
Confidence 776543222210 11111111111111 245777777888843 6666655555432 333 23455555543
No 53
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=92.05 E-value=0.44 Score=52.45 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=38.8
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCC-ceEEEEecCCCChH
Q psy12437 753 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMP-DLIIILVRHGTSPA 813 (901)
Q Consensus 753 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g-~~i~i~vG~~v~~~ 813 (901)
-++||.+..-... ...-..++++.++|.++.+||||+| ..||+|+|+..+..
T Consensus 165 ~~rL~~vrg~~~~---------~vr~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~ss~~ 217 (371)
T 3fg6_A 165 PTRLFQVRRNLAS---------ITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQE 217 (371)
T ss_dssp CCEEEEEECCSSS---------CCEEEEECSSGGGCBTTSEEEEECTTSEEEEEECTTCCHH
T ss_pred ccEEEEEeccCCC---------ceEEEEecCCHHHccCCCeEEEEcCCCeEEEEECCCCCHH
Confidence 5799999731100 0111236689999999999999999 99999999988764
No 54
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=91.17 E-value=0.43 Score=52.09 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=39.0
Q ss_pred cceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHH
Q psy12437 753 YPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAI 814 (901)
Q Consensus 753 yP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~ 814 (901)
-++||.+..-.. +.+ .-..++++.++|.++.+||||+|..||+|+|+..+..-
T Consensus 124 ~~rL~~v~g~~~--------~~~-~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~e 176 (344)
T 2fh1_A 124 STRLFQVRANSA--------GAT-RAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAE 176 (344)
T ss_dssp SSEEEEEEECTT--------CCE-EEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCHHH
T ss_pred CceEEEEECCCC--------Cce-EEEEecCchhhcCCCceEEEecCCEEEEEECCCCCHHH
Confidence 578999873110 001 11235689999999999999999999999999887643
No 55
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=89.02 E-value=1.3 Score=51.29 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=59.7
Q ss_pred CCCCcEEEEEEEcchhHHhhch-----HHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCcc
Q psy12437 311 PPQPAMYLFLLDVSQIAAQSGY-----LYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDID 385 (901)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~~g~-----l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~ 385 (901)
++.+-.++++||+|.+....+. +..+.-+..-++-.+..+. +||||+|++.+....+.
T Consensus 359 ~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d--~v~lv~Fs~~~~~~~~~--------------- 421 (535)
T 2nvo_A 359 QPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEP--DALTMGFAEQFRPLGIT--------------- 421 (535)
T ss_dssp CCCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSS--EEEEEEEBSSEEECCCC---------------
T ss_pred CCCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCC--ceEEEEECCcceEcCCC---------------
Confidence 4567889999999986432011 1111111111222222334 89999998754321110
Q ss_pred ccCCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCC
Q psy12437 386 DIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRG 456 (901)
Q Consensus 386 d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~G 456 (901)
++ ..|..+|+.|.... ..++.++.||..|..... ...+|+++++|--+.|
T Consensus 422 ------~~----------~~l~~~l~~l~~~~----~ggTdi~~~l~~a~~~~~-~~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 422 ------PR----------DTLESAMQKAQSVS----FGGTDCAQPILWAAQERL-DVDTFVVYTDNETWAG 471 (535)
T ss_dssp ------TT----------CCHHHHHHHTCCSS----BCCCCTTHHHHHHHHTTC-CCSEEEEEESSCCCCC
T ss_pred ------cc----------hhHHHHHHHHhhCC----CCCccHHHHHHHHHHhcC-CCCEEEEEeCCCccCC
Confidence 00 11334566664321 246678888887765543 4588999999876654
No 56
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=78.55 E-value=6.3 Score=39.45 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=61.3
Q ss_pred CcEEEEEEEcchhHHhhchHHHHHHHHHHH---HhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy12437 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQ---LKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (901)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~---L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p 390 (901)
|-=.+||+|+|.+... .++.+++.+... |..+.. +.||||.+|-+. . | +
T Consensus 3 pvDl~fl~D~S~SM~~--di~~lk~~~~~l~~~l~~~~~--~~r~Gfg~f~Dk-~-~---------~------------- 54 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQG--HLSNVQTLGSDLLKALNEISR--SGRIGFGSIVNM-T-F---------Q------------- 54 (212)
T ss_dssp CEEEEEEEECCGGGTT--THHHHHHHHHHHHHHHHHHCS--CEEEEEEEESSS-C-E---------E-------------
T ss_pred ceEEEEEEeCCCcchh--HHHHHHHHHHHHHHHHHhhCc--CceEEEEEEEcC-c-c---------e-------------
Confidence 4557999999986432 355555555444 444433 359999999443 0 0 0
Q ss_pred CCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH--hh--cCCCCEEEEEecCCCCC--CCCcccC
Q psy12437 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK--LL--QPTGGRITIFQTCLPNR--GPGALQS 462 (901)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~--ll--~~~GGrI~~F~~g~pt~--GpG~l~~ 462 (901)
-.+++.+..+.+...++++. ...+...|+..+.+-+.+++. -+ .. ..|+++|++-.+-. |-|++..
T Consensus 55 ----~~l~lT~d~~~F~~~v~~~~-vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~g 126 (212)
T 2iue_A 55 ----HILKLTADSSQFQRELRKQL-VSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLGT 126 (212)
T ss_dssp ----EEEEEESCHHHHHHHHHTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGGT
T ss_pred ----ecCCcCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCccccc
Confidence 01122223344555566542 222344566656554444421 12 23 67888888776653 4555543
No 57
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=74.91 E-value=6 Score=40.35 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=48.9
Q ss_pred CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecC-C---ccCchhhhhc
Q psy12437 441 TGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNS-Q---YVDLATLSGV 516 (901)
Q Consensus 441 ~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~-~---~~~l~~l~~l 516 (901)
..-.||++++|--|.|.. -.+.|+.+.+.||.|..+.+.. + ..|..+|..+
T Consensus 9 ~~k~iillTDG~~~~g~~-------------------------p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~I 63 (242)
T 3rag_A 9 TIRQILVITDGCSNIGPD-------------------------PVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSI 63 (242)
T ss_dssp CEEEEEEEESSCCCSSSC-------------------------HHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHH
T ss_pred CccEEEEEccCCCCCCCC-------------------------HHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHH
Confidence 445678888887666631 1467888899999999999843 3 3467899999
Q ss_pred cccCCceEEEeCC
Q psy12437 517 SKFSSGCIHHIPL 529 (901)
Q Consensus 517 ~~~TGG~v~~y~~ 529 (901)
+..|||..+....
T Consensus 64 A~~tGG~yf~a~~ 76 (242)
T 3rag_A 64 ADAGGGMCRIVQP 76 (242)
T ss_dssp HHHTTSCEEEECG
T ss_pred HHhcCCeEEEeeH
Confidence 9999999998743
No 58
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=71.75 E-value=0.8 Score=50.85 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred cccccccccccCeEEEEeCCceEEEEecCCCChH
Q psy12437 780 ILQLSAERLQATGTYLLNMPDLIIILVRHGTSPA 813 (901)
Q Consensus 780 ~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~ 813 (901)
.++++.++|.++.+||||+|..||+|+|+..+..
T Consensus 196 EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~ 229 (398)
T 3fg7_A 196 EVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGD 229 (398)
T ss_dssp ----------------------------------
T ss_pred EecCCHHHccCCceEEEEeCCeEEEEeCCCCCHH
Confidence 3568999999999999999999999999987654
No 59
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=67.54 E-value=2 Score=33.72 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=16.9
Q ss_pred CcCccCcccccCCCCCCCC
Q psy12437 267 NLPEIHEQFLYDRNTEMFG 285 (901)
Q Consensus 267 ~~~~~p~~~~~~~~~~~~~ 285 (901)
+.|.||+|+..|.++..|.
T Consensus 32 ~~W~C~~C~~~N~~P~~Y~ 50 (59)
T 2yrc_A 32 KLWACNFCYQRNQFPPSYA 50 (59)
T ss_dssp TEEECSSSCCEEECCSCCS
T ss_pred CEEEcccCCCcCCCCHHHh
Confidence 6899999999998888875
No 60
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=45.84 E-value=52 Score=29.35 Aligned_cols=33 Identities=9% Similarity=0.273 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEE
Q psy12437 333 LYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVH 365 (901)
Q Consensus 333 l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~ 365 (901)
.+.++++|+..+-.-|. .++++|-+++||..|-
T Consensus 112 Ae~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V~ 145 (147)
T 1b3t_A 112 AEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVD 145 (147)
T ss_dssp HHHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCcceEEEEEeCCCCcc
Confidence 45789999999877665 3678999999998763
Done!