BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1244
         (73 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3
          Length = 3578

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
            MREAVENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F +
Sbjct: 3168 MREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSA 3207



 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 29/29 (100%)

Query: 45   FLLAGLATGTVVVFHIDFNRWHHEFQQRY 73
            +LLAGL+TG+++VFHIDFNRWHHE+QQRY
Sbjct: 3550 YLLAGLSTGSIIVFHIDFNRWHHEYQQRY 3578


>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
          Length = 2946

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
            +REA+E QI+NFGQTPSQLL+EPHPPRSSAMH+
Sbjct: 2537 LREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHL 2569



 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 24/28 (85%)

Query: 46   LLAGLATGTVVVFHIDFNRWHHEFQQRY 73
            L+ G+A+G++V F+IDFNRWH+E Q RY
Sbjct: 2919 LITGMASGSIVAFNIDFNRWHYEHQNRY 2946


>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1
          Length = 2936

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
            +REA+E QI+NFGQTPSQLL+EPHPPRSSAMH+
Sbjct: 2527 LREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHL 2559



 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 24/28 (85%)

Query: 46   LLAGLATGTVVVFHIDFNRWHHEFQQRY 73
            L+ G+A+G++V F+IDFNRWH+E Q RY
Sbjct: 2909 LITGMASGSIVAFNIDFNRWHYEHQNRY 2936


>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo
            sapiens GN=LRBA PE=1 SV=4
          Length = 2863

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 23/90 (25%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGSAS---ALFLLA--------- 48
            +REAVE QI++FGQTPSQLL+EPHPPR SAM +   +F   +    + +L          
Sbjct: 2463 LREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLMFTDKAQQDVIMVLKFPSNSPVTH 2522

Query: 49   -------GLATGTVVVFHID----FNRWHH 67
                   GLAT  V+    +     N+WH+
Sbjct: 2523 VAANTQPGLATPAVITVTANRLFAVNKWHN 2552



 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 26/28 (92%)

Query: 46   LLAGLATGTVVVFHIDFNRWHHEFQQRY 73
            +++G+A+G++V+F+ DFNRWHHE+Q RY
Sbjct: 2836 IISGMASGSIVLFYNDFNRWHHEYQTRY 2863


>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus
            musculus GN=Lrba PE=1 SV=1
          Length = 2856

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 31/38 (81%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLF 38
            +REAVE QI++FGQTPSQLL+EPHPPR SAM     +F
Sbjct: 2456 LREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQASPLMF 2493



 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 26/28 (92%)

Query: 46   LLAGLATGTVVVFHIDFNRWHHEFQQRY 73
            +++G+A+G++V+F+ DFNRWHHE+Q RY
Sbjct: 2829 IISGMASGSIVLFYNDFNRWHHEYQTRY 2856


>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2
            SV=3
          Length = 2507

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 41   ASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY 73
            AS  F+L GL +G +VVF+ DFNRWH+E++ RY
Sbjct: 2459 ASHRFILGGLDSGAIVVFNADFNRWHYEYKHRY 2491



 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query: 4    AVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLF 38
            A+E QI +FGQTPSQLL E HPPR S M M  ++F
Sbjct: 2083 AIEQQILSFGQTPSQLLTEAHPPRHSIMSMAPTMF 2117


>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2
            PE=3 SV=1
          Length = 2531

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 41   ASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY 73
            AS  F+L GL +G +VVF+ DFNRWH+E++ RY
Sbjct: 2483 ASHRFILGGLDSGAIVVFNADFNRWHYEYKHRY 2515



 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query: 4    AVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLF 38
            A+E QI +FGQTPSQLL E HPPR S M M  ++F
Sbjct: 2107 AIEQQILSFGQTPSQLLAEAHPPRHSIMTMAPTMF 2141


>sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3
          Length = 2694

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSS---AMHMPSSLFGSASALF 45
            R+A+E  I NFGQTP QLL EPHPPR S   A+  P+ +  S   LF
Sbjct: 2259 RKALEGMINNFGQTPCQLLKEPHPPRLSAEEAVQKPTKIDTSTLNLF 2305


>sp|E7FAW3|NBEL2_DANRE Neurobeachin-like protein 2 OS=Danio rerio GN=nbeal2 PE=1 SV=1
          Length = 2801

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 10/53 (18%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSSAMH----------MPSSLFGSASAL 44
            R+A+E  I NFGQTP QLL EPHPPR SA +          +P +LF   S L
Sbjct: 2366 RKALEGIISNFGQTPCQLLKEPHPPRMSAENAFRRAARLDILPPNLFDQLSKL 2418


>sp|Q6ZQA0|NBEL2_MOUSE Neurobeachin-like protein 2 OS=Mus musculus GN=Nbeal2 PE=2 SV=2
          Length = 2742

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 23/29 (79%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSSA 30
            R+A+E  I NFGQTP QLL EPHPPR SA
Sbjct: 2308 RKALEGIISNFGQTPCQLLKEPHPPRLSA 2336


>sp|Q6ZNJ1|NBEL2_HUMAN Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2
          Length = 2754

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 22/29 (75%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSSA 30
            R+A+E  I NFGQTP QLL EPHP R SA
Sbjct: 2320 RKALEGIISNFGQTPCQLLKEPHPTRLSA 2348


>sp|Q54RQ8|LVSE_DICDI BEACH domain-containing protein lvsE OS=Dictyostelium discoideum
            GN=lvsE PE=4 SV=1
          Length = 2192

 Score = 40.0 bits (92), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSS 29
            R+++ +QIK FGQTP QL  +PHP R +
Sbjct: 1770 RQSIASQIKEFGQTPPQLFSKPHPIRKT 1797


>sp|Q8IZQ1|WDFY3_HUMAN WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens
            GN=WDFY3 PE=1 SV=2
          Length = 3526

 Score = 39.3 bits (90), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 9    IKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHID 61
            I NFGQ P QL  +PHPP+     + S L G  + + +L G  +  +   H+D
Sbjct: 2958 INNFGQIPKQLFKKPHPPK----RVRSRLNGDNAGISVLPGSTSDKIFFHHLD 3006


>sp|Q55DM1|LVSA_DICDI BEACH domain-containing protein lvsA OS=Dictyostelium discoideum
            GN=lvsA PE=4 SV=2
          Length = 3619

 Score = 38.1 bits (87), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSSAM 31
            + A   QI NFGQTP QL  +PHP R++ +
Sbjct: 3245 KAATIAQINNFGQTPKQLFDKPHPKRNATL 3274


>sp|Q54PP7|LVSF_DICDI BEACH domain-containing protein lvsF OS=Dictyostelium discoideum
           GN=lvsF PE=4 SV=1
          Length = 1154

 Score = 38.1 bits (87), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/26 (57%), Positives = 17/26 (65%)

Query: 2   REAVENQIKNFGQTPSQLLMEPHPPR 27
           RE +E QI  FGQTP Q+   PHP R
Sbjct: 672 REGMEAQINEFGQTPRQIFKTPHPQR 697


>sp|P25356|BPH1_YEAST Beige protein homolog 1 OS=Saccharomyces cerevisiae (strain ATCC
            204508 / S288c) GN=BPH1 PE=4 SV=2
          Length = 2167

 Score = 37.4 bits (85), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPR 27
            R A+   I NFGQTP Q+  EPHP +
Sbjct: 1814 RRAITGIIHNFGQTPLQIFQEPHPEK 1839


>sp|Q55AV3|LVSD_DICDI BEACH domain-containing protein lvsD OS=Dictyostelium discoideum
            GN=lvsD PE=4 SV=2
          Length = 2967

 Score = 36.6 bits (83), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 1    MREAVENQIKNFGQTPSQLL-MEPHPPR 27
            +REA   QI NFG TPSQL   +PHP R
Sbjct: 2465 LREATRVQINNFGVTPSQLFPNQPHPQR 2492


>sp|Q54U63|LVSC_DICDI BEACH domain-containing protein lvsC OS=Dictyostelium discoideum
            GN=lvsC PE=4 SV=2
          Length = 2491

 Score = 35.8 bits (81), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 17/23 (73%)

Query: 2    REAVENQIKNFGQTPSQLLMEPH 24
            R A E+QI NFGQTP+QL  + H
Sbjct: 2092 RRATESQINNFGQTPTQLFSKKH 2114


>sp|Q6VNB8|WDFY3_MOUSE WD repeat and FYVE domain-containing protein 3 OS=Mus musculus
            GN=Wdfy3 PE=1 SV=1
          Length = 3508

 Score = 35.4 bits (80), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 9    IKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHID 61
            I NFGQ P QL  +PHPP+     + S L G    + +  G  +  +   H+D
Sbjct: 2940 INNFGQIPKQLFKKPHPPK----RVRSRLNGDNIGISVPPGATSDKIFFHHLD 2988


>sp|Q86JF2|LVSB_DICDI BEACH domain-containing protein lvsB OS=Dictyostelium discoideum
            GN=lvsB PE=4 SV=1
          Length = 4118

 Score = 34.3 bits (77), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRS 28
            R+A   QI ++GQTP Q+  +PHP ++
Sbjct: 3757 RDAAVAQIHSYGQTPKQIFTKPHPKKN 3783


>sp|Q92636|FAN_HUMAN Protein FAN OS=Homo sapiens GN=NSMAF PE=1 SV=2
          Length = 917

 Score = 33.9 bits (76), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 4   AVENQIKNFGQTPSQLLMEPHPPR 27
           A+  QI  FGQTP QL + PHP R
Sbjct: 552 AMLTQILEFGQTPKQLFVTPHPRR 575


>sp|Q6ZS81|WDFY4_HUMAN WD repeat- and FYVE domain-containing protein 4 OS=Homo sapiens
            GN=WDFY4 PE=1 SV=3
          Length = 3184

 Score = 33.5 bits (75), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 9    IKNFGQTPSQLLMEPHPPRSSA 30
            + NFGQ P QL  +PHP R++A
Sbjct: 2803 VSNFGQVPKQLFTKPHPARTAA 2824


>sp|Q7LKZ7|BPH1_SCHPO Beige protein homolog 1 OS=Schizosaccharomyces pombe (strain 972 /
            ATCC 24843) GN=lvs1 PE=1 SV=2
          Length = 2609

 Score = 33.1 bits (74), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 9    IKNFGQTPSQLLMEPHPPR 27
            I NFGQTP Q+  +PHP R
Sbjct: 2184 IHNFGQTPKQVFKKPHPQR 2202


>sp|O35242|FAN_MOUSE Protein FAN OS=Mus musculus GN=Nsmaf PE=2 SV=2
          Length = 920

 Score = 32.7 bits (73), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 4   AVENQIKNFGQTPSQLLMEPHPPR 27
           A+  QI  FGQTP QL + PHP R
Sbjct: 552 AMLTQILEFGQTPKQLFVTPHPRR 575


>sp|Q9FMU5|UTP18_ARATH U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis
           thaliana GN=At5g14050 PE=1 SV=1
          Length = 546

 Score = 31.2 bits (69), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 14  QTPSQLLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHIDFNRWHH 67
             PS  +    PP +S MH P  L  S  + F+  G A G V+++ +     HH
Sbjct: 494 HVPSLTVFSNWPPPNSTMHYPRCLDFSPGSGFMAMGNAAGKVLLYKL-----HH 542


>sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus GN=LYST PE=1 SV=1
          Length = 3796

 Score = 30.8 bits (68), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPR 27
            R A+E  IK +GQTP QL    H  R
Sbjct: 3392 RRALETMIKTYGQTPRQLFQSAHASR 3417


>sp|P97412|LYST_MOUSE Lysosomal-trafficking regulator OS=Mus musculus GN=Lyst PE=1 SV=1
          Length = 3788

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSSA 30
            R A+E  IK +GQTP QL    H  R  A
Sbjct: 3384 RRALETMIKTYGQTPRQLFHTAHASRPGA 3412


>sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3
          Length = 3801

 Score = 29.6 bits (65), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSSA 30
            R A+E  IK +GQTP QL    H  R  A
Sbjct: 3397 RRALETMIKTYGQTPRQLFHMAHVSRPGA 3425


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.133    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,871,624
Number of Sequences: 539616
Number of extensions: 750417
Number of successful extensions: 2848
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2812
Number of HSP's gapped (non-prelim): 36
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)