Query psy1244
Match_columns 73
No_of_seqs 112 out of 323
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 19:19:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02138 Beach: Beige/BEACH do 98.7 3.7E-09 8.1E-14 78.0 1.2 26 2-27 245-270 (270)
2 cd06071 Beach BEACH (Beige and 98.7 7.8E-09 1.7E-13 76.7 2.6 26 2-27 250-275 (275)
3 KOG1787|consensus 98.1 2.6E-06 5.7E-11 73.0 3.5 66 3-68 726-817 (1126)
4 KOG1786|consensus 92.9 0.058 1.3E-06 46.6 1.7 30 2-31 601-630 (1081)
5 PF10578 SVS_QK: Seminal vesic 60.4 1.8 4E-05 18.5 -0.6 11 7-17 1-11 (12)
6 TIGR02171 Fb_sc_TIGR02171 Fibr 31.9 42 0.00091 29.4 2.6 30 41-70 693-722 (912)
7 COG4367 Uncharacterized protei 28.1 51 0.0011 21.5 1.9 16 2-17 57-72 (97)
8 KOG1787|consensus 26.6 21 0.00045 31.9 -0.1 30 44-73 1094-1123(1126)
9 PF10078 DUF2316: Uncharacteri 24.1 68 0.0015 20.4 2.0 16 2-17 58-73 (89)
10 PF00165 HTH_AraC: Bacterial r 20.4 32 0.0007 17.8 -0.1 10 10-19 31-40 (42)
No 1
>PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling. The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C.
Probab=98.72 E-value=3.7e-09 Score=78.01 Aligned_cols=26 Identities=65% Similarity=1.105 Sum_probs=12.2
Q ss_pred hHHHHHHHHhcCCCccccCCCCCCCC
Q psy1244 2 REAVENQIKNFGQTPSQLLMEPHPPR 27 (73)
Q Consensus 2 r~a~~~qI~~FGQtP~Qlf~~pHp~R 27 (73)
+.++++++.+|||+|.|||++|||+|
T Consensus 245 ~~~~~~~~~~~Gq~P~QLF~~pHP~R 270 (270)
T PF02138_consen 245 REAIEAQLKNFGQVPIQLFTKPHPKR 270 (270)
T ss_dssp HHHHHHHHHHC--------SS-----
T ss_pred HHHHHHHHHhcCCChHHHhCCCCCCC
Confidence 67899999999999999999999998
No 2
>cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins.
Probab=98.70 E-value=7.8e-09 Score=76.68 Aligned_cols=26 Identities=69% Similarity=1.132 Sum_probs=25.0
Q ss_pred hHHHHHHHHhcCCCccccCCCCCCCC
Q psy1244 2 REAVENQIKNFGQTPSQLLMEPHPPR 27 (73)
Q Consensus 2 r~a~~~qI~~FGQtP~Qlf~~pHp~R 27 (73)
+.++++++.+|||+|.|||++|||+|
T Consensus 250 ~~~~~~~~~~~Gq~P~QLF~~pHP~R 275 (275)
T cd06071 250 REAIEAQINNFGQTPVQLFTKPHPKR 275 (275)
T ss_pred HHHHHHHHHhcCCCcchhccCCCCCC
Confidence 67999999999999999999999998
No 3
>KOG1787|consensus
Probab=98.09 E-value=2.6e-06 Score=73.03 Aligned_cols=66 Identities=44% Similarity=0.543 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCccccCCCCCCCCCCCCCC---CCccchhhhHH-------H------------hHhhccCCCeEEEE-
Q psy1244 3 EAVENQIKNFGQTPSQLLMEPHPPRSSAMHM---PSSLFGSASAL-------F------------LLAGLATGTVVVFH- 59 (73)
Q Consensus 3 ~a~~~qI~~FGQtP~Qlf~~pHp~R~~~~~~---~~~~f~~~~~K-------f------------~~~~ls~gsVVtV~- 59 (73)
++++.||.+|||||+|+|.++||+|.+...+ ++++|++.... + .+..+..++++.+.
T Consensus 726 eai~~~i~~f~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s~s~~~v~aan~~~~~~~~~~~~~~~ 805 (1126)
T KOG1787|consen 726 EAIEAQIASFGQTPSQLLQEQHPPRASESKLALPSALVFEDASQLDVGIVLKRPSNSSVVVVAANTLFELCQPTVLGVRS 805 (1126)
T ss_pred HHHHHHHhhccccchhhhhhccCCcchhccccccccchhhhhhhhhhhhccccCCCCcceeecccccccccccceeeeee
Confidence 6999999999999999999999999999886 34688774331 1 24566667777664
Q ss_pred ---eeeccchhH
Q psy1244 60 ---IDFNRWHHE 68 (73)
Q Consensus 60 ---~avnkW~~~ 68 (73)
+..|+|+..
T Consensus 806 ~~~~~~n~~~~~ 817 (1126)
T KOG1787|consen 806 LLEFPRNISSPS 817 (1126)
T ss_pred eEEeehhccccc
Confidence 899999874
No 4
>KOG1786|consensus
Probab=92.87 E-value=0.058 Score=46.64 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcCCCccccCCCCCCCCCCCC
Q psy1244 2 REAVENQIKNFGQTPSQLLMEPHPPRSSAM 31 (73)
Q Consensus 2 r~a~~~qI~~FGQtP~Qlf~~pHp~R~~~~ 31 (73)
..++++++++|||+|+|||.++|+.+...+
T Consensus 601 ~~~~~~~~~~~~~~~~~l~~~~h~~~~~~~ 630 (1081)
T KOG1786|consen 601 QNILIVSNNHFKQTIKQLFPKKHSVSELTE 630 (1081)
T ss_pred hhhhHHHhhccccchhhcccccccccccch
Confidence 357888999999999999999999999986
No 5
>PF10578 SVS_QK: Seminal vesicle protein repeat; InterPro: IPR018942 The rat seminal vesicle contains six major androgen-dependent secretory proteins referred to as SVS I-VI. The SVS I-III proteins appear to be components of the rat copulatory plug, with the SVS II protein being the major component []. This entry represents a repeat that is found in seminal vesical proteins.
Probab=60.44 E-value=1.8 Score=18.49 Aligned_cols=11 Identities=55% Similarity=0.715 Sum_probs=8.1
Q ss_pred HHHHhcCCCcc
Q psy1244 7 NQIKNFGQTPS 17 (73)
Q Consensus 7 ~qI~~FGQtP~ 17 (73)
+|++.|||.=+
T Consensus 1 ~Q~ksfgQ~Ks 11 (12)
T PF10578_consen 1 SQQKSFGQEKS 11 (12)
T ss_pred Ccccccchhcc
Confidence 47888999654
No 6
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=31.90 E-value=42 Score=29.44 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=24.2
Q ss_pred hhHHHhHhhccCCCeEEEEeeeccchhHhh
Q psy1244 41 ASALFLLAGLATGTVVVFHIDFNRWHHEFQ 70 (73)
Q Consensus 41 ~~~Kf~~~~ls~gsVVtV~~avnkW~~~~~ 70 (73)
+.++|.++.+..=..|++.++++.|+++..
T Consensus 693 l~~ny~l~h~~klK~vv~eld~d~~~~~~~ 722 (912)
T TIGR02171 693 LLMNYAIPHAKKLKYVVVELSLDFWWNTAT 722 (912)
T ss_pred HHHHHhhhhcccccEEEEEEecchhcccch
Confidence 445688888888888999999999998743
No 7
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.08 E-value=51 Score=21.55 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=13.4
Q ss_pred hHHHHHHHHhcCCCcc
Q psy1244 2 REAVENQIKNFGQTPS 17 (73)
Q Consensus 2 r~a~~~qI~~FGQtP~ 17 (73)
|..+..-|.+=||||-
T Consensus 57 Rd~l~~~i~e~GqtP~ 72 (97)
T COG4367 57 RDFLVQAIRESGQTPV 72 (97)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 5677888999999995
No 8
>KOG1787|consensus
Probab=26.59 E-value=21 Score=31.86 Aligned_cols=30 Identities=40% Similarity=0.811 Sum_probs=26.3
Q ss_pred HHhHhhccCCCeEEEEeeeccchhHhhhcC
Q psy1244 44 LFLLAGLATGTVVVFHIDFNRWHHEFQQRY 73 (73)
Q Consensus 44 Kf~~~~ls~gsVVtV~~avnkW~~~~~~~~ 73 (73)
+.++-+...+.++.+.-++|+|++|++.||
T Consensus 1094 ~~~~~~~~~~~~~~~~~~fn~~~~~~~~r~ 1123 (1126)
T KOG1787|consen 1094 RLLFSGDRSDSISAFESDFNRWHYESRSRY 1123 (1126)
T ss_pred hhhhcCccccchhccchhhccccccccccc
Confidence 456778888889999999999999999987
No 9
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.06 E-value=68 Score=20.44 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=14.6
Q ss_pred hHHHHHHHHhcCCCcc
Q psy1244 2 REAVENQIKNFGQTPS 17 (73)
Q Consensus 2 r~a~~~qI~~FGQtP~ 17 (73)
|..+++.|.+=|++|-
T Consensus 58 RdyL~~~i~~~G~eP~ 73 (89)
T PF10078_consen 58 RDYLNDKIKEQGKEPV 73 (89)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 7899999999999994
No 10
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=20.36 E-value=32 Score=17.75 Aligned_cols=10 Identities=50% Similarity=0.680 Sum_probs=6.6
Q ss_pred HhcCCCcccc
Q psy1244 10 KNFGQTPSQL 19 (73)
Q Consensus 10 ~~FGQtP~Ql 19 (73)
..+|.||+|.
T Consensus 31 ~~~g~tp~~y 40 (42)
T PF00165_consen 31 KETGMTPKQY 40 (42)
T ss_dssp HHTSS-HHHH
T ss_pred HHHCcCHHHH
Confidence 4579999874
Done!