Query psy1244
Match_columns 73
No_of_seqs 112 out of 323
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:19:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t77_A Lipopolysaccharide-resp 99.1 4.2E-11 1.4E-15 91.9 2.7 27 1-27 388-414 (414)
2 2apo_B Ribosome biogenesis pro 29.6 34 0.0012 19.5 2.1 19 14-32 20-40 (60)
3 2aus_D NOP10, ribosome biogene 16.7 58 0.002 18.6 1.3 13 20-32 27-39 (60)
4 1y2y_A Ribosome biogenesis pro 14.3 76 0.0026 18.1 1.3 12 21-32 28-39 (58)
5 3u5c_N S27A, YS15, 40S ribosom 11.5 78 0.0027 21.2 1.0 19 3-21 31-52 (151)
6 3j20_Q 30S ribosomal protein S 10.2 92 0.0032 20.9 1.0 19 3-21 31-52 (158)
7 2bay_A PRE-mRNA splicing facto 9.9 1.2E+02 0.0043 16.2 1.3 16 1-16 27-42 (61)
8 2xzm_O RPS13E; ribosome, trans 8.9 1.1E+02 0.0038 20.5 1.0 18 4-21 34-54 (153)
9 1eze_A Cholesteryl ester trans 8.4 97 0.0033 16.2 0.4 9 7-15 9-17 (38)
10 3oio_A Transcriptional regulat 8.3 77 0.0026 18.2 -0.0 12 8-19 94-105 (113)
No 1
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=99.07 E-value=4.2e-11 Score=91.94 Aligned_cols=27 Identities=81% Similarity=1.349 Sum_probs=25.7
Q ss_pred ChHHHHHHHHhcCCCccccCCCCCCCC
Q psy1244 1 MREAVENQIKNFGQTPSQLLMEPHPPR 27 (73)
Q Consensus 1 ~r~a~~~qI~~FGQtP~Qlf~~pHp~R 27 (73)
+|.|+++||+||||||.|||++|||+|
T Consensus 388 ~~~a~~~~i~~fGQ~P~QLF~~pHP~R 414 (414)
T 1t77_A 388 LREAVEAQIRSFGQTPSQLLIEPHPPR 414 (414)
T ss_dssp HHHHHHHHHHHHCCCCCCCCSSCCCCC
T ss_pred HHHHHHHHHHHcCCChhhhhcCCCCCC
Confidence 378999999999999999999999998
No 2
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=29.56 E-value=34 Score=19.50 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=14.0
Q ss_pred CCcc--ccCCCCCCCCCCCCC
Q psy1244 14 QTPS--QLLMEPHPPRSSAMH 32 (73)
Q Consensus 14 QtP~--Qlf~~pHp~R~~~~~ 32 (73)
++|. .-...+||+|-++++
T Consensus 20 ~CP~CG~~T~~~hParfSp~D 40 (60)
T 2apo_B 20 ICPKCGEKTVIPKPPKFSLED 40 (60)
T ss_dssp BCSSSCSBCBCCCCCCCCTTC
T ss_pred cCcCCCCcCCCCCCCCCCCCc
Confidence 3553 556789999988776
No 3
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=16.69 E-value=58 Score=18.56 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q psy1244 20 LMEPHPPRSSAMH 32 (73)
Q Consensus 20 f~~pHp~R~~~~~ 32 (73)
-..+||+|-++++
T Consensus 27 t~~ahParfSP~D 39 (60)
T 2aus_D 27 TKVAHPPRFSPED 39 (60)
T ss_dssp CEESSCCCCCSCC
T ss_pred cCCCCCCCCCCCC
Confidence 3568999988876
No 4
>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP, pseudouridine, biosynthetic protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A
Probab=14.27 E-value=76 Score=18.09 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCC
Q psy1244 21 MEPHPPRSSAMH 32 (73)
Q Consensus 21 ~~pHp~R~~~~~ 32 (73)
..+||+|-++++
T Consensus 28 ~sahPaRFSPdD 39 (58)
T 1y2y_A 28 KSAHPARFSPDD 39 (58)
T ss_dssp SSSCSSSSCSCT
T ss_pred ccCCCCCCCCCc
Confidence 568999988876
No 5
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=11.47 E-value=78 Score=21.17 Aligned_cols=19 Identities=47% Similarity=0.653 Sum_probs=13.8
Q ss_pred HHHHHHHHhc---CCCccccCC
Q psy1244 3 EAVENQIKNF---GQTPSQLLM 21 (73)
Q Consensus 3 ~a~~~qI~~F---GQtP~Qlf~ 21 (73)
+.+|.+|-+. |.||+|+..
T Consensus 31 eeVe~~I~klakkG~tpSqIG~ 52 (151)
T 3u5c_N 31 ESVIEQIVKYARKGLTPSQIGV 52 (151)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHhhh
Confidence 3567777665 999999864
No 6
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=10.17 E-value=92 Score=20.91 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=13.6
Q ss_pred HHHHHHHHhc---CCCccccCC
Q psy1244 3 EAVENQIKNF---GQTPSQLLM 21 (73)
Q Consensus 3 ~a~~~qI~~F---GQtP~Qlf~ 21 (73)
+.+|.+|-+. |.||+|+..
T Consensus 31 eev~~~i~klakkG~~pSqIG~ 52 (158)
T 3j20_Q 31 EEIENLVVKLRKEGYSTAMIGT 52 (158)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHhhH
Confidence 3566777665 999999864
No 7
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=9.88 E-value=1.2e+02 Score=16.20 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.3
Q ss_pred ChHHHHHHHHhcCCCc
Q psy1244 1 MREAVENQIKNFGQTP 16 (73)
Q Consensus 1 ~r~a~~~qI~~FGQtP 16 (73)
+|++++.-|...|..|
T Consensus 27 er~~I~~~l~~~~~cP 42 (61)
T 2bay_A 27 EKSLLEQYVKDTGNDP 42 (61)
T ss_dssp EHHHHHHHHHHHSBCT
T ss_pred cHHHHHHHHHhCCCCc
Confidence 4788999998877655
No 8
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=8.85 E-value=1.1e+02 Score=20.47 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=12.6
Q ss_pred HHHHHHHh---cCCCccccCC
Q psy1244 4 AVENQIKN---FGQTPSQLLM 21 (73)
Q Consensus 4 a~~~qI~~---FGQtP~Qlf~ 21 (73)
.+|.+|-+ =|.||+|+..
T Consensus 34 eVe~~I~klakkG~tpSqIG~ 54 (153)
T 2xzm_O 34 TVVDLSVKLAKKGLTPSQIGV 54 (153)
T ss_dssp HHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHhhh
Confidence 45666654 4999999864
No 9
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=8.38 E-value=97 Score=16.15 Aligned_cols=9 Identities=44% Similarity=1.014 Sum_probs=6.1
Q ss_pred HHHHhcCCC
Q psy1244 7 NQIKNFGQT 15 (73)
Q Consensus 7 ~qI~~FGQt 15 (73)
+++.+||+|
T Consensus 9 dkvke~g~t 17 (38)
T 1eze_A 9 DKLKEFGNT 17 (38)
T ss_dssp HHHHHHTTH
T ss_pred HHHHHHHHH
Confidence 567777764
No 10
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=8.26 E-value=77 Score=18.24 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=8.9
Q ss_pred HHHhcCCCcccc
Q psy1244 8 QIKNFGQTPSQL 19 (73)
Q Consensus 8 qI~~FGQtP~Ql 19 (73)
.=+.||.||++.
T Consensus 94 Fk~~~G~tP~~y 105 (113)
T 3oio_A 94 YRNHFNITPREE 105 (113)
T ss_dssp HHHHHSSCHHHH
T ss_pred HHHHHCcCHHHH
Confidence 335689999875
Done!