RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1244
(73 letters)
>gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain. The BEACH domain was
described in the BEIGE protein (D1035670) and in the
highly homologous CHS protein. The BEACH domain is
usually followed by a series of WD repeats. The function
of the BEACH domain is unknown.
Length = 280
Score = 53.4 bits (129), Expect = 3e-10
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 1 MREAVENQIKNFGQTPSQLLMEPHPPR 27
R+A+E QI NFGQTP QL EPHPPR
Sbjct: 254 ERKALEGQIHNFGQTPKQLFKEPHPPR 280
>gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains,
implicated in membrane trafficking, are present in a
family of proteins conserved throughout eukaryotes. This
group contains human lysosomal trafficking regulator
(LYST), LPS-responsive and beige-like anchor (LRBA) and
neurobeachin. Disruption of LYST leads to
Chediak-Higashi syndrome, characterized by severe
immunodeficiency, albinism, poor blood coagulation and
neurologic problems. Neurobeachin is a candidate gene
linked to autism. LBRA seems to be upregulated in
several cancer types. It has been shown that the BEACH
domain itself is important for the function of these
proteins.
Length = 275
Score = 48.8 bits (117), Expect = 1e-08
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 1 MREAVENQIKNFGQTPSQLLMEPHPPR 27
REA+E QI NFGQTP QL +PHP R
Sbjct: 249 EREAIEAQINNFGQTPVQLFTKPHPKR 275
>gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain.
Length = 274
Score = 48.0 bits (115), Expect = 3e-08
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 1 MREAVENQIKNFGQTPSQLLMEPHPPR 27
REA+E QI NFGQTP QL EPHP R
Sbjct: 248 EREAIEAQISNFGQTPKQLFTEPHPKR 274
>gnl|CDD|200433 TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family.
Members of this family are glycosyltransferases
restricted to the archaea. All but two members are from
species with the PGF-CTERM/archaeosortase A system, a
proposed maturation system for exported, glycosylated
proteins as are found often in S-layers.
Length = 293
Score = 31.1 bits (71), Expect = 0.025
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 27 RSSAMHMPSSLFGSASALFLLAGLATGTVVV 57
R + + P FG A+F LAG G VV
Sbjct: 216 RLAKTNNPLFYFGIIGAIFGLAGFLLGIYVV 246
>gnl|CDD|218795 pfam05884, ZYG-11_interact, Interactor of ZYG-11. This family of
proteins represents the protein product of the gene
W03D8.9 which has been identified as an interactor of
ZYG-11. ZYG-11 is the substrate-recognition subunit for
a CUL-2 based complex that regulates cell division and
embryonic development.
Length = 295
Score = 26.3 bits (58), Expect = 1.4
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 7 NQIKNFGQTPSQ-------LLMEPHPPRSSAMHMPSSLFGSASALFLLAGLAT 52
N + +F T + LME PP + S F ++S L L+A +++
Sbjct: 64 NDLYSFQSTFKEDSNKFLNALMELSPPEKISGFNISETFANSSILLLVASISS 116
>gnl|CDD|162619 TIGR01948, rnfE, electron transport complex, RnfABCDGE type, E
subunit. The six subunit complex RnfABCDGE in
Rhodobacter capsulatus encodes an apparent NADH
oxidoreductase responsible for electron transport to
nitrogenase, necessary for nitrogen fixation. A closely
related complex in E. coli, RsxABCDGE (Reducer of SoxR),
reduces the 2Fe-2S-containing superoxide sensor SoxR,
active as a transcription factor when oxidized. This
family of putative NADH oxidoreductase complexes exists
in many of the same species as the related NQR, a
Na(+)-translocating NADH-quinone reductase, but is
distinct. This model describes the E subunit [Energy
metabolism, Electron transport].
Length = 196
Score = 25.8 bits (57), Expect = 2.1
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 39 GSASALFLLAG----LATGTVVVFHIDFNRWHHEFQ 70
G LF+L G L GT++ F + +F
Sbjct: 133 GFTLVLFVLGGIREILGNGTLLDFGMFVITVFGKFS 168
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 25.7 bits (57), Expect = 2.6
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 26 PRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHIDFN 63
+P+ +F + L +A G+ VV F+
Sbjct: 246 RAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFD 283
>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. The archaeal sequences Methanopyrus kandleri
spcS and MK0229 are annotated as being pyridoxal
phosphate-dependent enzymes.
Length = 386
Score = 25.6 bits (56), Expect = 2.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGSASALFLLAG 49
+RE +++ + G+ QLL PH P SSAM + + S L
Sbjct: 287 LRELIKDLAEEVGE---QLLDVPHNPISSAMTLETLDEISKKGRTDLGS 332
>gnl|CDD|218230 pfam04724, Glyco_transf_17, Glycosyltransferase family 17. This
family represents beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase (EC:2.4.1.144).
This enzyme transfers the bisecting GlcNAc to the core
mannose of complex N-glycans. The addition of this
residue is regulated during development and has
functional consequences for receptor signalling, cell
adhesion, and tumour progression.
Length = 357
Score = 25.4 bits (56), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 21 MEPHPPRSSAMHMPSSLFGSASAL-FLLAG 49
M P PP SA+H+P L +A +LL G
Sbjct: 322 MGPIPPSYSAVHLPKYLLENADKYKYLLPG 351
>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan putative glycerol kinases (GK), which may be
coded by the GK-like gene, GK5. Sequence comparison
shows members of this group are homologs of bacterial
GKs, and they retain all functionally important
residues. However, GK-like proteins in this family do
not have detectable GK activity. The reason remains
unclear. It has been suggested tha the conserved
catalytic residues might facilitate them performing a
distinct function. GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 504
Score = 25.3 bits (56), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 10 KNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
+FG T +L P P R+S ++LFGS
Sbjct: 234 GDFGSTDPELFGVPIPIRASVGDQQAALFGS 264
>gnl|CDD|151313 pfam10864, DUF2663, Protein of unknown function (DUF2663). Some
members in this family of proteins are annotated as
YpbF however currently no function is known.
Length = 131
Score = 25.0 bits (55), Expect = 3.4
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 19 LLMEPHPPRSSAMHMPSSLFGSASALFLLAGLAT--GTVVVFH 59
L S S++ S LF L A GT V F
Sbjct: 37 YLYAKVTGSYSFTSFLSAILASPVHLFWLLLAALSYGTAVYFK 79
>gnl|CDD|215419 PLN02784, PLN02784, alpha-amylase.
Length = 894
Score = 25.4 bits (55), Expect = 3.7
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 22 EPHPPRSS--------AMHMPSSLFGSASALFLLAGLATGTVVVFHIDFNRW 65
EPHPP +S M +S LF L G G + V ++ W
Sbjct: 328 EPHPPETSLFKNKALQTMLQQKDDGNGSSGLFSLDGELEGLLFVLKLNEGTW 379
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 25.1 bits (55), Expect = 3.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 44 LFLLAGLATGTVVVFHIDFNRWH 66
LFL G+ G + I+F+ +
Sbjct: 36 LFLSIGMLAGVDGLGGIEFDNYP 58
>gnl|CDD|237166 PRK12666, PRK12666, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 528
Score = 24.8 bits (55), Expect = 4.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 19 LLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHI 60
LL E A+ + S+L A A+ LLA A G + V+ +
Sbjct: 24 LLDERRRRLKRAISLASTLLLLAVAVALLASAAAGGIGVYLL 65
>gnl|CDD|236502 PRK09410, ulaA, PTS system ascorbate-specific transporter subunit
IIC; Reviewed.
Length = 452
Score = 24.8 bits (55), Expect = 5.1
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 16/44 (36%)
Query: 38 FGSASALFLLAGLATGTVVVFHIDFNRW----------HHEFQQ 71
FGSA+AL +L G + +I R+ HH FQ
Sbjct: 93 FGSATALIMLLGF------LINILLARFTPFKYIFLTGHHMFQM 130
>gnl|CDD|224877 COG1966, CstA, Carbon starvation protein, predicted membrane
protein [Signal transduction mechanisms].
Length = 575
Score = 24.6 bits (54), Expect = 5.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 37 LFGSASALFLLAGLA--TGTVVVFHIDFNRWHH 67
LFG A+ + LAG+A T VV+ + R +H
Sbjct: 467 LFGIANQM--LAGIALLTAAVVLARMGRRRRYH 497
>gnl|CDD|232875 TIGR00211, glyS, glycyl-tRNA synthetase, tetrameric type, beta
subunit. The glycyl-tRNA synthetases differ even among
the eubacteria in oligomeric structure. In Escherichia
coli and most others, it is a heterodimer of two alpha
chains and two beta chains, encoded by tandem genes. The
genes are similar, but fused, in Chlamydia trachomatis.
By contrast, the glycyl-tRNA synthetases of Thermus
thermophilus and of archaea and eukaryotes differ
considerably; they are homodimeric, mutually similar,
and not detected by this model [Protein synthesis, tRNA
aminoacylation].
Length = 691
Score = 24.8 bits (54), Expect = 5.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 17 SQLLMEPHPPRSSAMHMPSSLFGSASAL 44
+ + E + PRS+ +PSSL GS A+
Sbjct: 429 AVAVNEQYLPRSAGDDLPSSLVGSVVAM 456
>gnl|CDD|217125 pfam02588, DUF161, Uncharacterized BCR, YitT family COG1284.
This is probably a bacterial ABC transporter permease
(personal obs:Yeats C).
Length = 80
Score = 23.5 bits (52), Expect = 6.4
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 35 SSLFGSASALFLLAGLATGTVVVFHIDFNRWHH 67
L G LFL GL+TG + ++
Sbjct: 9 GLLLGLGIGLFLRPGLSTGGTDGLALILSKKFG 41
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 24.2 bits (53), Expect = 6.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 60 IDFNRWHHEFQQRY 73
I F RW EF +RY
Sbjct: 3 IPFTRWPEEFARRY 16
>gnl|CDD|225906 COG3371, COG3371, Predicted membrane protein [Function unknown].
Length = 181
Score = 23.9 bits (52), Expect = 8.1
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 42 SALFLLAGLATGTVVVFHIDFNRWHHE 68
AL +++GL V VF H
Sbjct: 79 GALLIISGLFLALVGVFPEGT-PPHVF 104
>gnl|CDD|237154 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 965
Score = 24.1 bits (53), Expect = 8.5
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 22 EPHPPRSSAMHMPSSLFGSASALFLLAGLATG 53
+ MH PS LF + A+ + GL G
Sbjct: 436 AFPSVAVTEMHRPSPLFLAPPAVLAVLGLVLG 467
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.133 0.410
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,734,752
Number of extensions: 272804
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 28
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)