RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1244
         (73 letters)



>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein,
           CDC4-like protein; PH-beach domains, vesicle
           trafficking, signal transduction; 2.40A {Homo sapiens}
           SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
          Length = 414

 Score = 48.2 bits (114), Expect = 1e-08
 Identities = 22/27 (81%), Positives = 26/27 (96%)

Query: 1   MREAVENQIKNFGQTPSQLLMEPHPPR 27
           +REAVE QI++FGQTPSQLL+EPHPPR
Sbjct: 388 LREAVEAQIRSFGQTPSQLLIEPHPPR 414


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.6 bits (53), Expect = 3.2
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 22/71 (30%)

Query: 9   IKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHIDF------ 62
           IKN+      +   P   +S      S+LF +            G   +  I F      
Sbjct: 123 IKNYITA-RIMAKRPFDKKS-----NSALFRAVGE---------GNAQLVAI-FGGQGNT 166

Query: 63  NRWHHEFQQRY 73
           + +  E +  Y
Sbjct: 167 DDYFEELRDLY 177



 Score = 23.5 bits (50), Expect = 8.6
 Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 23/57 (40%)

Query: 2   REAVENQIKNFGQTPSQLLMEPHPPRSSAMHM--------------PSSLFGSASAL 44
           +E V++ +              H P    + +              P SL+G    L
Sbjct: 346 QEQVQDYVNKTNS---------HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393


>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily
           member, M-xylarate, U function; HET: DXL; 1.30A
           {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
          Length = 389

 Score = 24.6 bits (54), Expect = 3.7
 Identities = 7/40 (17%), Positives = 13/40 (32%)

Query: 30  AMHMPSSLFGSASALFLLAGLATGTVVVFHIDFNRWHHEF 69
             H  + +   A+ L L+A      +  + I  N      
Sbjct: 302 NPHTFNDIITVAANLHLVAASPHPAMFEWDITHNDLMTRL 341


>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
           complex; 2.40A {Saccharomyces cerevisiae}
          Length = 902

 Score = 23.7 bits (50), Expect = 7.8
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 17  SQLLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHIDFNRWHHEFQQ 71
           S+ L +        +        +A  L L   + TG VV+F  + N+++    +
Sbjct: 480 SRTLNKAKELAVDKISF------AAETLELAVSIETGDVVLFKYEVNQFYSVENR 528


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,148,910
Number of extensions: 51466
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 9
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)