RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1244
         (73 letters)



>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and
           beige-like anchor protein LRBA {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 304

 Score = 50.8 bits (121), Expect = 6e-10
 Identities = 22/27 (81%), Positives = 26/27 (96%)

Query: 1   MREAVENQIKNFGQTPSQLLMEPHPPR 27
           +REAVE QI++FGQTPSQLL+EPHPPR
Sbjct: 278 LREAVEAQIRSFGQTPSQLLIEPHPPR 304


>d1ehxa_ b.1.18.13 (A:) Cellulosomal scaffoldin protein CipC,
          module x2.1 {Clostridium cellulolyticum [TaxId: 1521]}
          Length = 94

 Score = 24.0 bits (52), Expect = 1.6
 Identities = 5/18 (27%), Positives = 5/18 (27%)

Query: 47 LAGLATGTVVVFHIDFNR 64
          L  L   T      DF  
Sbjct: 57 LNTLPENTTKTLTFDFGV 74


>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
           [TaxId: 4682]}
          Length = 425

 Score = 23.9 bits (51), Expect = 2.2
 Identities = 6/40 (15%), Positives = 11/40 (27%)

Query: 18  QLLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVV 57
            +   PH            L  + S     +G   G  ++
Sbjct: 226 MVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALI 265


>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
           {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 388

 Score = 22.9 bits (48), Expect = 6.1
 Identities = 9/55 (16%), Positives = 11/55 (20%), Gaps = 2/55 (3%)

Query: 21  MEPHPPRSSAMHMPSSL--FGSASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY 73
              H   +S   M          S  F + G   G V        R         
Sbjct: 208 DARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNA 262


>d1mvma_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
          protein {Murine minute virus, strain i [TaxId: 10794]}
          Length = 549

 Score = 22.5 bits (48), Expect = 7.6
 Identities = 4/15 (26%), Positives = 5/15 (33%)

Query: 58 FHIDFNRWHHEFQQR 72
            +D N W    Q  
Sbjct: 74 SLVDANAWGVWLQPS 88


>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
          protein {Human parvovirus B19 [TaxId: 10798]}
          Length = 536

 Score = 22.2 bits (47), Expect = 9.4
 Identities = 4/15 (26%), Positives = 7/15 (46%)

Query: 58 FHIDFNRWHHEFQQR 72
           ++DFN  +  F   
Sbjct: 70 RYLDFNALNLFFSPL 84


>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
          protein {Canine parvovirus [TaxId: 10788]}
          Length = 548

 Score = 22.2 bits (47), Expect = 9.7
 Identities = 4/15 (26%), Positives = 5/15 (33%)

Query: 58 FHIDFNRWHHEFQQR 72
            +D N W   F   
Sbjct: 74 SLVDANAWGVWFNPG 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 277,014
Number of extensions: 9367
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 13
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)