RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12441
(916 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 343 bits (883), Expect = e-108
Identities = 144/392 (36%), Positives = 201/392 (51%), Gaps = 48/392 (12%)
Query: 547 PEPIESWPGVWNVSTDNALHCIQFLHFPAGPYR--VNGQEDCLYLSVYTPKAENQSDLLD 604
P+P E W GV + + C Q + + EDCLYL+VYTPK ++S L
Sbjct: 43 PQPPEPWTGVLDATKYGPA-CPQNNDLGSEMWNKNTGMSEDCLYLNVYTPKLASESKKLP 101
Query: 605 VIVFIHGGAFMFG-------------------------R-----FLSTGDDVVPGNMGLK 634
V+V+IHGG F G R FLSTGD +PGN GL
Sbjct: 102 VMVWIHGGGFQSGSASLDDYDGPDLAASEDVVVVTINYRLGALGFLSTGDSELPGNAGLL 161
Query: 635 DQTQALRWIQENIAQFGGNPKSVTITGSSAGGASVQYQMLSPQAKGLFQRGISMSGTSLC 694
DQ ALRW+++NIA FGG+P +VT+ G SAG ASV +LSP ++GLF R I MSG++L
Sbjct: 162 DQVLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSLLLLSPASRGLFHRAILMSGSALS 221
Query: 695 PWALTENLPEKTKLIANYLGCPV-NSSEEMIECLRTRPAPVIADAVRLSQPFLFNPFSPW 753
PWA+T N ++ K +A LGCP +SS E++ECLR + A + DA F P+
Sbjct: 222 PWAITSNPRQRAKRLAKLLGCPGEDSSAELLECLRKKSAEELLDAQL--LLLEEVGFFPF 279
Query: 754 GPTVDSFAKNPFLPDFPAELIKQGKIANVPWLNSVTADEGLYPAAEFLASQTILKTID-A 812
GP VD FLP P EL+K G VP L VT+DEGL A L T L +
Sbjct: 280 GPVVDG----DFLPKDPEELLKSGWFNKVPLLIGVTSDEGLLFLAYVLPDPTELSELLNE 335
Query: 813 NWTSLAPHILDFNSTVPDNLKDKTAEKIRHKYLGD-NPINLENHKAFIQILSDRMFIADA 871
++ L P +L + A+ ++ +Y D + + E+ A + +LSD +F+
Sbjct: 336 DFLELLPELLPGAPELSR-----IADALKEEYTDDPDDNSEESRDALVDLLSDYLFVCPI 390
Query: 872 ERASRLQSKVSKSPVYFYYFNFRGRYSLTDYY 903
A+ + + SPVY Y F++R S+ +
Sbjct: 391 RLAAARLAS-AGSPVYLYRFDYRSSGSINKLW 421
Score = 204 bits (522), Expect = 4e-57
Identities = 121/425 (28%), Positives = 167/425 (39%), Gaps = 111/425 (26%)
Query: 108 SKLLDVIVYIHGGAFMFG---QGFRYKPFPLIEQQDVVYVEFNYRLGPLGFLSTGDDVVP 164
SK L V+V+IHGG F G P + DVV V NYRLG LGFLSTGD +P
Sbjct: 97 SKKLPVMVWIHGGGFQSGSASLDDYDGPDLAASE-DVVVVTINYRLGALGFLSTGDSELP 155
Query: 165 GNMGLKDQTQALRWIQENIAQFGGNPKSVTITGMSAGGAS------LPQAGNQSDLLDVI 218
GN GL DQ ALRW+++NIA FGG+P +VT+ G SAG AS P + L
Sbjct: 156 GNAGLLDQVLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSLLLLSPAS---RGL---- 208
Query: 219 VFIHGGAFMFGSGFHFKPIPLMEEHDMVYVELDYRDPEPIKSWAGVWNATNEEGDILKCT 278
H M GS P + L K G + ++L+C
Sbjct: 209 --FHRAILMSGSALS--PWAITSNPRQRAKRL-------AKL-LG-CPGEDSSAELLECL 255
Query: 279 QFMHVPGGPNSVGGQEDCLYLSIYTPKPFYYNPFSPWGPTVDSFAKNPILPDFPAELIKQ 338
+ +E L F P+GP VD LP P EL+K
Sbjct: 256 R---------KKSAEE----LLDAQLLLLEEVGFFPFGPVVDG----DFLPKDPEELLKS 298
Query: 339 GKIADVPWLNSVTTDEGLYPAAEFLASEEALKTIDADWTSLAPHILDFNFTVPDNLKAKI 398
G VP L VT+DEGL FLA +L + + L
Sbjct: 299 GWFNKVPLLIGVTSDEGLL----FLAY-----------------VLPDPTELSELLNE-- 335
Query: 399 AEKIRQKYLGDKPINLENKKAFVQEALETIDADWTSLAPHILDFNFTVPDNLKAKIAEKI 458
D+ L P +L ++IA+ +
Sbjct: 336 --------------------------------DFLELLPELLPGA-----PELSRIADAL 358
Query: 459 RQKYLGD-KPINLENKKAFVQIISDRMFIADAER-TSRLQSKVCKSPVYFYYFNFRGRYS 516
+++Y D + E++ A V ++SD +F+ +RL S SPVY Y F++R S
Sbjct: 359 KEEYTDDPDDNSEESRDALVDLLSDYLFVCPIRLAAARLASA--GSPVYLYRFDYRSSGS 416
Query: 517 LSNHY 521
++ +
Sbjct: 417 INKLW 421
Score = 58.9 bits (143), Expect = 8e-09
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 1 MSGTSLCPWTLAENLPEKTKIIANQLGCPVECNEK-MVECLRSRPAALIADA 51
MSG++L PW + N ++ K +A LGCP E + ++ECLR + A + DA
Sbjct: 215 MSGSALSPWAITSNPRQRAKRLAKLLGCPGEDSSAELLECLRKKSAEELLDA 266
Score = 57.3 bits (139), Expect = 2e-08
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 249 ELDYRDPEPIKSWAGVWNATNEEGDILKCTQF-MHVPGGPNSVGGQ-EDCLYLSIYTPKP 306
EL ++ P+P + W GV +AT + G C Q N G EDCLYL++YTPK
Sbjct: 37 ELRFKKPQPPEPWTGVLDAT-KYGP--ACPQNNDLGSEMWNKNTGMSEDCLYLNVYTPKL 93
Score = 45.0 bits (107), Expect = 1e-04
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 206 PQAGNQSDLLDVIVFIHGGAFMFGSGFH---FKPIPLMEEHDMVYVELDYR 253
P+ ++S L V+V+IHGG F GS P E D+V V ++YR
Sbjct: 91 PKLASESKKLPVMVWIHGGGFQSGSASLDDYDGPDLAASE-DVVVVTINYR 140
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 334 bits (858), Expect = e-105
Identities = 161/402 (40%), Positives = 211/402 (52%), Gaps = 46/402 (11%)
Query: 546 DPEPIESWPGVWNVSTDNALHCIQFLHFPAGPYRVN--GQEDCLYLSVYTPKAENQSDLL 603
+P+P E W V + +T C+Q+ G + G EDCLYL+VYTPK + L
Sbjct: 37 EPQPYEPWSDVLD-ATSYPPSCMQWDQLGGGLWNAKLPGSEDCLYLNVYTPKNTKPGNSL 95
Query: 604 DVIVFIHGGAFMFG------------------------R-----FLSTGDDVVPGNMGLK 634
V+V+IHGG FMFG R FLSTGD +PGN GLK
Sbjct: 96 PVMVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLK 155
Query: 635 DQTQALRWIQENIAQFGGNPKSVTITGSSAGGASVQYQMLSPQAKGLFQRGISMSGTSLC 694
DQ AL+W+Q+NIA FGG+P SVTI G SAGGASV +LSP +KGLF R IS SG++L
Sbjct: 156 DQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215
Query: 695 PWALTENLPEKTKLIANYLGCPVNSSEEMIECLRTRPAPVIADAVRLSQPFLFNPFSPWG 754
PWA+ EN + K +A LGC SS E+++CLR++ A + DA R F ++PF P+G
Sbjct: 216 PWAIQENARGRAKRLARLLGCNDTSSAELLDCLRSKSAEELLDATRKLLLFSYSPFLPFG 275
Query: 755 PTVDSFAKNPFLPDFPAELIKQGKIANVPWLNSVTADEGLYPAAEFLASQTILKTIDA-N 813
P VD F+PD P ELIK+GK A VP + VT DEG Y AA L L
Sbjct: 276 PVVDG----DFIPDDPEELIKEGKFAKVPLIIGVTKDEGGYFAAMLLNFDAKLIIETNDR 331
Query: 814 WTSLAPHILDFNSTVPDNLKDKTAEKIRHKYLGDNPINLENHKAFIQILSDRMFIADAER 873
W L P++L + D A+K+ KY GD ++E+ K +L+D +F A
Sbjct: 332 WLELLPYLLFYAD-------DALADKVLEKYPGDVDDSVESRKNLSDMLTDLLFKCPARY 384
Query: 874 ASRLQSKVSKSPVYFYYFNFRGRYS--LTDYYEKKPHNFDVR 913
K SPVY Y F+ R S + H ++
Sbjct: 385 FLAQHRKAGGSPVYAYVFDHRSSLSVGRWPPWLGTVHGDEIF 426
Score = 148 bits (375), Expect = 9e-38
Identities = 60/98 (61%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 108 SKLLDVIVYIHGGAFMFGQGFRYKPFPLI-EQQDVVYVEFNYRLGPLGFLSTGDDVVPGN 166
L V+V+IHGG FMFG G Y L E +V+ V NYRLG LGFLSTGD +PGN
Sbjct: 92 GNSLPVMVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGN 151
Query: 167 MGLKDQTQALRWIQENIAQFGGNPKSVTITGMSAGGAS 204
GLKDQ AL+W+Q+NIA FGG+P SVTI G SAGGAS
Sbjct: 152 YGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGAS 189
Score = 91.6 bits (228), Expect = 4e-19
Identities = 55/215 (25%), Positives = 79/215 (36%), Gaps = 66/215 (30%)
Query: 304 PKPFYYNPFSPWGPTVDSFAKNPILPDFPAELIKQGKIADVPWLNSVTTDEGLYPAAEFL 363
F Y+PF P+GP VD +PD P ELIK+GK A VP + VT DEG Y
Sbjct: 263 LLLFSYSPFLPFGPVVDG----DFIPDDPEELIKEGKFAKVPLIIGVTKDEGGYF----- 313
Query: 364 ASEEALKTIDADWTSLAPHILDFNFTVPDNLKAKIAEKIRQKYLGDKPINLENKKAFVQE 423
+ + K I
Sbjct: 314 ----------------------AAMLLNFDAKLII------------------------- 326
Query: 424 ALETIDADWTSLAPHILDFNFTVPDNLKAKIAEKIRQKYLGDKPINLENKKAFVQIISDR 483
+ W L P++L F D +A+K+ +KY GD ++E++K +++D
Sbjct: 327 ---ETNDRWLELLPYLL---FYADD----ALADKVLEKYPGDVDDSVESRKNLSDMLTDL 376
Query: 484 MFIADAERTSRLQSKVCKSPVYFYYFNFRGRYSLS 518
+F A K SPVY Y F+ R S+
Sbjct: 377 LFKCPARYFLAQHRKAGGSPVYAYVFDHRSSLSVG 411
Score = 57.3 bits (139), Expect = 2e-08
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 249 ELDYRDPEPIKSWAGVWNATNEEGDILKCTQFMHVPGGPNSVGGQEDCLYLSIYTPKP 306
+L +++P+P + W+ V +AT+ ++ Q + G EDCLYL++YTPK
Sbjct: 32 DLRFKEPQPYEPWSDVLDATSYPPSCMQWDQLGG-GLWNAKLPGSEDCLYLNVYTPKN 88
Score = 51.6 bits (124), Expect = 1e-06
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 1 MSGTSLCPWTLAENLPEKTKIIANQLGCPVECNEKMVECLRSRPAALIADA 51
SG++L PW + EN + K +A LGC + ++++CLRS+ A + DA
Sbjct: 209 QSGSALSPWAIQENARGRAKRLARLLGCNDTSSAELLDCLRSKSAEELLDA 259
Score = 41.9 bits (99), Expect = 0.001
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 206 PQAGNQSDLLDVIVFIHGGAFMFGSGFHFKPIPLMEEHDMV-YVELDYR 253
P+ + L V+V+IHGG FMFGSG + L E D V V ++YR
Sbjct: 86 PKNTKPGNSLPVMVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYR 134
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 169 bits (429), Expect = 6e-45
Identities = 110/402 (27%), Positives = 171/402 (42%), Gaps = 72/402 (17%)
Query: 547 PEPIESWPGVWNVSTDNALHCIQFLHFPAGPYRVNGQEDCLYLSVYTPKAENQSDLLDVI 606
P P E W GV + + C Q + G EDCLYL+++ P E ++ L V+
Sbjct: 41 PVPPEPWSGVRDATQFGPA-CPQPFNRMGSGEDFTGSEDCLYLNIWAP--EVPAEKLPVM 97
Query: 607 VFIHGGAFMFG----------RFLSTGDDVV------------------------PGNMG 632
V+IHGG ++ G + GD VV N+G
Sbjct: 98 VYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLG 157
Query: 633 LKDQTQALRWIQENIAQFGGNPKSVTITGSSAGGASVQYQMLSPQAKGLFQRGISMSGTS 692
L DQ AL+W+++NI FGG+P++VT+ G SAG AS+ + P AKGLF R I++SG +
Sbjct: 158 LLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAA 217
Query: 693 LCPWALTENLPEKTKLIANYLGCPVNSSEEMIECLRTRPAPVIADAVRLSQPFLFNPF-- 750
+ E EK A LG P E ++ LR A D V+ P + F
Sbjct: 218 SRVTSREEAR-EKAAAFARALGIP----EATLDKLRALSA---EDLVKARLPLIGRTFGA 269
Query: 751 SPWGPTVDSFAKNPFLPDFPAELIKQGKIANVPWLNSVTADEGLYPAAEFLASQTILKTI 810
P+GP + + LP P E I QG+ VP + DEG ++
Sbjct: 270 VPYGPVLG----DSLLPRDPLEAIAQGRSHGVPLMIGTNHDEG-----------SLFINF 314
Query: 811 DANWTSLAPHILDFNSTVPDNLKDKTAEKIRHKYLGDNPINLENHKAFIQILSDRMFIAD 870
+ P + D + + AE++ Y P AF +++DR+F A
Sbjct: 315 NP---DSPPGLRDKVAARLPGKELINAERVPAAY----PGVSAAAAAFGALVTDRLFKAP 367
Query: 871 AERASRLQSKVSKSPVYFYYFNFRGRYSLTDYYEKKPHNFDV 912
+ R Q++ + +P + Y F++ ++ PH ++
Sbjct: 368 SIR--LAQAQSAGAPTWLYRFDYAPD-TVRVPGFGAPHATEL 406
Score = 116 bits (292), Expect = 3e-27
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 6/98 (6%)
Query: 113 VIVYIHGGAFMFGQGF--RYKPFPLIEQQDVVYVEFNYRLGPLGFLS----TGDDVVPGN 166
V+VYIHGG ++ G G Y L + DVV V NYRLG LGFL +D N
Sbjct: 96 VMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASN 155
Query: 167 MGLKDQTQALRWIQENIAQFGGNPKSVTITGMSAGGAS 204
+GL DQ AL+W+++NI FGG+P++VT+ G SAG AS
Sbjct: 156 LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAAS 193
Score = 43.2 bits (102), Expect = 6e-04
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 217 VIVFIHGGAFMFGSGFH--FKPIPLMEEHDMVYVELDYR 253
V+V+IHGG ++ GSG + L D+V V ++YR
Sbjct: 96 VMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYR 134
Score = 42.4 bits (100), Expect = 9e-04
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 249 ELDYRDPEPIKSWAGVWNATNEEGDILKCTQFMHVPGGPNSVGGQEDCLYLSIYTP 304
EL +R P P + W+GV +AT + G C Q + G G EDCLYL+I+ P
Sbjct: 35 ELRFRRPVPPEPWSGVRDAT-QFGPA--CPQPFNRMGSGEDFTGSEDCLYLNIWAP 87
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 59.2 bits (143), Expect = 3e-09
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 113 VIVYIHGGAFMFG--QGFRYKPFPLIEQQDVVYVEFNYRLGP-LGFLSTGDDVVPGNMGL 169
V++Y+HGG ++ G + L V V +YRL P F + +D
Sbjct: 81 VVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHPFPAALEDAY------ 134
Query: 170 KDQTQALRWIQENIAQFGGNPKSVTITGMSAGG---ASLPQA 208
A RW++ N A+ G +P + + G SAGG +L A
Sbjct: 135 ----AAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALA 172
Score = 47.6 bits (113), Expect = 2e-05
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 22/97 (22%)
Query: 591 VYTPKAENQSDLLDVIVFIHGGAFMFG-----------RFLSTGDDVV----------PG 629
VY P + + V++++HGG ++ G + G VV P
Sbjct: 68 VYRPDRKAAATA-PVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHPF 126
Query: 630 NMGLKDQTQALRWIQENIAQFGGNPKSVTITGSSAGG 666
L+D A RW++ N A+ G +P + + G SAGG
Sbjct: 127 PAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGG 163
Score = 31.1 bits (70), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 217 VIVFIHGGAFMFGS-GFHFKPIP-LMEEHDMVYVELDYR 253
V++++HGG ++ GS H + L V V +DYR
Sbjct: 81 VVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYR 119
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 48.7 bits (117), Expect = 3e-06
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 114 IVYIHGGAFMFGQGFRYKPFP--LIEQQDVVYVEFNYRLGPLGFLSTGDDVVPGNMGLKD 171
+VY HGG F+ G + L V V +YRL P + P ++D
Sbjct: 1 LVYFHGGGFVLGSADTHDRLCRRLAAAAGAVVVSVDYRLAP-------EHPFPA--AIED 51
Query: 172 QTQALRWIQENIAQFGGNPKSVTITGMSAGG 202
ALRW+ E+ + G +P + + G SAGG
Sbjct: 52 AYAALRWLAEHAWELGADPSRIAVAGDSAGG 82
Score = 44.5 bits (106), Expect = 7e-05
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 25/84 (29%)
Query: 606 IVFIHGGAFMFG------RFLS-----TGDDVV------------PGNMGLKDQTQALRW 642
+V+ HGG F+ G R G VV P ++D ALRW
Sbjct: 1 LVYFHGGGFVLGSADTHDRLCRRLAAAAGAVVVSVDYRLAPEHPFPA--AIEDAYAALRW 58
Query: 643 IQENIAQFGGNPKSVTITGSSAGG 666
+ E+ + G +P + + G SAGG
Sbjct: 59 LAEHAWELGADPSRIAVAGDSAGG 82
Score = 29.1 bits (66), Expect = 8.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 218 IVFIHGGAFMFGS 230
+V+ HGG F+ GS
Sbjct: 1 LVYFHGGGFVLGS 13
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 32.0 bits (73), Expect = 0.52
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 605 VIVFIHGGAF-------MFGRFLSTGDDVV----PGNMGLKDQTQALRWIQENIAQFGGN 653
++V +HG + S G +VV PG+ A + A +
Sbjct: 1 LVVLLHGAGGDPEAYAPLARALASRGYNVVAVDYPGHGASLGAPDAEAVL----ADAPLD 56
Query: 654 PKSVTITGSSAGGASVQY 671
P+ + + G S GG
Sbjct: 57 PERIVLVGHSLGGGVALL 74
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 32.9 bits (75), Expect = 0.79
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 15/130 (11%)
Query: 77 QGFRYKPFPLIEQQDVVYVEFNYRLGPLGDQSKLLDVIVYIHGGAF-MFGQGFRYKPFPL 135
+ YK D + P D K +IVYIHGG G F + L
Sbjct: 366 EPVTYKSN------DGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVL 419
Query: 136 IEQQDVVYVEFNYRLGPLGF---LSTGDDVVPGNMGLKDQTQALRWIQENIAQFGGNPKS 192
V + NYR G G+ + G + L+D A+ + + +P+
Sbjct: 420 ASAGYAV-LAPNYR-GSTGYGREFADAIRGDWGGVDLEDLIAAVDALVK---LPLVDPER 474
Query: 193 VTITGMSAGG 202
+ ITG S GG
Sbjct: 475 IGITGGSYGG 484
Score = 29.8 bits (67), Expect = 8.0
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 33/106 (31%)
Query: 591 VYTPKAENQSDLLDVIVFIHGG-----AFMFGRFL-----------------STG----- 623
+Y P + +IV+IHGG + F + STG
Sbjct: 382 LYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREF 441
Query: 624 ---DDVVPGNMGLKDQTQALRWIQENIAQFGGNPKSVTITGSSAGG 666
G + L+D A+ + + +P+ + ITG S GG
Sbjct: 442 ADAIRGDWGGVDLEDLIAAVDALVK---LPLVDPERIGITGGSYGG 484
>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase
(PMM/PGM) bifunctional enzyme catalyzes the reversible
conversion of 1-phospho to 6-phospho-sugars (e.g.
between mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a
bisphosphorylated sugar intermediate. The reaction
involves two phosphoryl transfers, with an intervening
180 degree reorientation of the reaction intermediate
during catalysis. Reorientation of the intermediate
occurs without dissociation from the active site of the
enzyme and is thus, a simple example of processivity, as
defined by multiple rounds of catalysis without release
of substrate. Glucose-6-phosphate and
glucose-1-phosphate are known to be utilized for energy
metabolism and cell surface construction, respectively.
PMM/PGM belongs to the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the
phosphoglucomutases (PGM1 and PGM2). Each of these
enzymes has four domains with a centrally located active
site formed by four loops, one from each domain. All
four domains are included in this alignment model.
Length = 443
Score = 32.1 bits (74), Expect = 1.4
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 353 DEGLYPAAEFLASEEAL----KTIDADWTSLAPHI--LDFNFTVPDNLKAKIAEKIRQKY 406
D+G+Y A L E L KT+ L + + V + K + E++++ +
Sbjct: 331 DDGIYAALRLL---ELLSKSGKTLSELLADLPKYFSTPEIRIPVTEEDKFAVIERLKEHF 387
Query: 407 L--GDKPINLE 415
G + I+++
Sbjct: 388 EFPGAEIIDID 398
>gnl|CDD|234861 PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.
Length = 552
Score = 31.2 bits (72), Expect = 2.6
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 157 STGDDVVPGNMGLKDQTQALRWIQENIAQFGGNPKSV-TIT---GMSAG--G--ASLP 206
++ +++ P N+ L + A ++E + GG P TI G++ G G SL
Sbjct: 38 NSWNEITPCNIHLNELADA---VKEGVRAAGGVPFEFNTIGVSDGIAMGHEGMKYSLV 92
Score = 30.0 bits (69), Expect = 7.4
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 621 STGDDVVPGNMGLKDQTQALRWIQENIAQFGGNP 654
++ +++ P N+ L + A ++E + GG P
Sbjct: 38 NSWNEITPCNIHLNELADA---VKEGVRAAGGVP 68
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 31.2 bits (71), Expect = 2.8
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 396 AKIAEKIRQKYLGDKPINLENKKAFVQEALETID-----ADWTSLAPHILDFNFTVPDNL 450
K+ E + L + ++ L I ++ L L FT +
Sbjct: 399 EKVQEHLTS--LRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEI 456
Query: 451 KAKIAEKIRQKYLGDKPINLENKKAFVQIISDRM 484
+ + E L + PIN+E A V I ++ M
Sbjct: 457 QDLMKE------LSEVPINMEAVSALVDIATEDM 484
>gnl|CDD|223207 COG0129, IlvD, Dihydroxyacid dehydratase/phosphogluconate
dehydratase [Amino acid transport and metabolism /
Carbohydrate transport and metabolism].
Length = 575
Score = 30.6 bits (70), Expect = 5.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 153 LGFLSTGDDVVPGNMGLKDQTQALRWIQENIAQFGGNPKSVTITGMSAGGA 203
+G ++ +D+VPG+ LKD Q ++ E I + GG P + G A
Sbjct: 45 IGIANSYNDMVPGHQHLKDLAQLVK---EGIREAGGVPVEFGTIAVCDGIA 92
>gnl|CDD|223934 COG1002, COG1002, Type II restriction enzyme, methylase subunits
[Defense mechanisms].
Length = 786
Score = 30.6 bits (69), Expect = 5.3
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 399 AEKIRQKYLGDKPINLENKKAFVQEALETIDADWTSLAPHILDFNFTVPDNLKAKIAEKI 458
+ R LG+ NL+N+K I A + +N I +
Sbjct: 11 YDYKRPSVLGEVFKNLKNRKLNKPATYLYITQYLIDRARGLPLYNVDDY------IIFPV 64
Query: 459 RQKY 462
Q+
Sbjct: 65 FQEL 68
>gnl|CDD|233994 TIGR02746, TraC-F-type, type-IV secretion system protein TraC. The
protein family described here is common among the F, P
and I-like type IV secretion systems. Gene symbols
include TraC (F-type), TrbE/VirB4 (P-type) and TraU
(I-type). The protein conyains the Walker A and B motifs
and so is a putative nucleotide triphosphatase.
Length = 797
Score = 30.0 bits (68), Expect = 6.5
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 380 APHILDFNFTVPDNLKAKIAEKIRQKYLGDKPI--------NLENKKAFVQEALETIDAD 431
P +L F V D +K K + K L + +LE K ++ E I +
Sbjct: 253 CPFLLSFTVRVEDQVKKKAKATAKAKDLNKQAKSSMAKWVPSLEKKLKEIKYLREAIASG 312
Query: 432 WTSLAPHILDFN-FTVPDNLKA 452
SL + FT PDNL+
Sbjct: 313 GDSLVSMYYNVLLFTNPDNLRR 334
>gnl|CDD|232828 TIGR00110, ilvD, dihydroxy-acid dehydratase. This protein,
dihydroxy-acid dehydratase, catalyzes the fourth step in
valine and isoleucine biosynthesis. It contains a
catalytically essential [4Fe-4S] cluster This model
generates scores of up to 150 bits vs.
6-phosphogluconate dehydratase, a homologous enzyme
[Amino acid biosynthesis, Pyruvate family].
Length = 535
Score = 30.1 bits (68), Expect = 6.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 161 DVVPGNMGLKDQTQALRWIQENIAQFGGNPKSVTITGMSAG 201
+VPG+M L+D QA ++E I GG + G
Sbjct: 22 TIVPGHMHLRDLAQA---VKEGIEAAGGVAFEFNTIAVCDG 59
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 30.2 bits (68), Expect = 7.5
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 448 DNLKAKIAEKIRQKYLGDKPINLENKKAFVQIISDRMF----IADAERTSRLQSKVCKSP 503
+N+K KI +K ++ D LE+ K F +I D + E T+ + K K
Sbjct: 2261 NNIKDKINDKEKELINVDSSFTLESIKTFNEIYDDIKSNIGDLYKLEDTNNDELK--KVK 2318
Query: 504 VYF-YYFNFRGRYSLSNHYANRLDDYGED 531
+Y + R N N LD+Y ++
Sbjct: 2319 LYIENITHLLNR---INTLINDLDNYQDE 2344
>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated.
Length = 675
Score = 29.8 bits (68), Expect = 7.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 398 IAEKIRQKYLGDKPINLENKKAFVQEALETI---DADWT--SLAPH 438
I +K ++YL KP + K QEA E I + T SL P+
Sbjct: 324 ITKKYGKEYLPAKPRVYKKKSKNAQEAHEAIRPTSINRTPESLKPY 369
>gnl|CDD|188702 cd08748, RGS_GRK1, Regulator of G protein signaling domain (RGS)
found in G protein-coupled receptor kinase 1 (GRK1).
The RGS domain is found in G protein-coupled receptor
kinases 1 (GRK1, also refered to as Rhodopsin kinase)
which play a key role in phosphorylation of rhodopsin
(Rho), a G protein-coupled receptor responsible for
visual signal transduction in rod cell. GRK1 is a member
of the GRK kinase family which includes three major
subfamilies: the GRK4 subfamily (GRK4, GRK5 and GRK6),
the rhodopsin kinase or visual GRK subfamily (GRK1 and
GRK7), and the beta-adrenergic receptor kinases
subfamily (GRK2/GRK3). The RGS domain of the GRKs has
very little sequence similarity with the canonical RGS
domain of the RGS proteins and therefore is often
refered to as the RH (RGS Homology) domain. A few
inactivation mutations in GRK1 have been found in
patients with Oguchi disease, a stationary form of night
blindness. RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
as well as apoptosis, cell proliferation, and modulation
of cardiac development.
Length = 138
Score = 28.6 bits (64), Expect = 8.0
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 361 EFLASEEALKTIDADWTSLAPHILDFNFTVPDNLKAKIAEKIRQKYL 407
+FL + E A W I D++ D +AK A+ IR +YL
Sbjct: 33 QFLEATEGYAAAVALWKD----IEDYD-VAEDGERAKKAQAIRNRYL 74
>gnl|CDD|215228 PLN02408, PLN02408, phospholipase A1.
Length = 365
Score = 29.8 bits (67), Expect = 8.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 151 GPL---GFLSTGDDVVPGNMGLKDQT--QALRWIQENIAQFGGNPKSVTITGMSAGGA 203
GP+ GFLS L++ + R +Q +G P S+TITG S G A
Sbjct: 159 GPMVESGFLSLYTSGTAMGPSLQEMVREEIARLLQS----YGDEPLSLTITGHSLGAA 212
>gnl|CDD|149071 pfam07801, DUF1647, Protein of unknown function (DUF1647). The
sequences making up this family are all derived from
hypothetical proteins expressed by C. elegans. The
region in question is approximately 160 amino acids
long. The GO annotation for this protein indicates the
protein to be involved in nematode larval development
and to have a positive regulation on growth rate.
Length = 142
Score = 28.4 bits (64), Expect = 8.2
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 845 LGDNPINLENHKAFIQILSDRMFIADAERASRLQSKVSKSPVYFYYFNFRGRY-----SL 899
L P + + I+ SD +F++ S S + YY N +Y +L
Sbjct: 42 LIGEPESFVDLSDTIRNESDVVFVSATSDDHLNNSMKSYKSIRKYYPN--HKYILYSLNL 99
Query: 900 TDYY----EKKPHNFDVRKFE 916
++ Y K P NF+ R F
Sbjct: 100 SEAYISKLPKNPKNFEFRVFN 120
>gnl|CDD|236660 PRK10162, PRK10162, acetyl esterase; Provisional.
Length = 318
Score = 29.3 bits (66), Expect = 8.2
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 25/96 (26%)
Query: 591 VYTPKAENQSDLLDVIVFIHGGAFMFG---------RFL--STGDDVVPGNMGLKDQT-- 637
+Y P+ ++Q+ + ++HGG F+ G R L +G V+ + L +
Sbjct: 73 LYYPQPDSQA----TLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEARF 128
Query: 638 -QAL-------RWIQENIAQFGGNPKSVTITGSSAG 665
QA+ + ++ +G N + G SAG
Sbjct: 129 PQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAG 164
>gnl|CDD|185017 PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.
Length = 388
Score = 29.2 bits (65), Expect = 10.0
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 702 LPEKTK-LIANYLGCPVNSSEEMIECLRTRPAPVIADAVRLSQP 744
LP+ TK L+ANY P N +++ RTR IADA+ +P
Sbjct: 254 LPKDTKQLLANYQSVPNNLISAIVDANRTR-KDFIADAILSRKP 296
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,083,275
Number of extensions: 4833122
Number of successful extensions: 4138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4107
Number of HSP's successfully gapped: 56
Length of query: 916
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 810
Effective length of database: 6,236,078
Effective search space: 5051223180
Effective search space used: 5051223180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.5 bits)