Query psy12442
Match_columns 208
No_of_seqs 222 out of 1344
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:24:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2836|consensus 100.0 1.8E-43 3.8E-48 248.7 16.8 170 3-208 2-173 (173)
2 PTZ00393 protein tyrosine phos 100.0 6.4E-34 1.4E-38 222.1 17.1 148 8-157 82-229 (241)
3 PTZ00242 protein tyrosine phos 100.0 1.8E-33 4E-38 212.6 17.8 148 10-157 8-158 (166)
4 KOG1720|consensus 99.9 4.2E-25 9E-30 167.3 14.3 121 32-155 84-206 (225)
5 smart00195 DSPc Dual specifici 99.9 1.5E-24 3.2E-29 159.6 15.9 124 27-155 11-137 (138)
6 PF00782 DSPc: Dual specificit 99.9 1.3E-24 2.9E-29 158.8 9.9 124 29-155 6-132 (133)
7 cd00127 DSPc Dual specificity 99.9 2.3E-23 5E-28 153.1 15.5 125 27-154 12-139 (139)
8 KOG1718|consensus 99.9 2.5E-23 5.4E-28 152.4 12.5 158 30-194 30-192 (198)
9 PRK12361 hypothetical protein; 99.9 2.6E-21 5.7E-26 171.6 17.5 149 4-161 89-241 (547)
10 KOG1719|consensus 99.9 3.3E-21 7.2E-26 139.4 11.8 124 33-158 42-171 (183)
11 KOG1717|consensus 99.8 1.1E-20 2.5E-25 147.8 11.9 134 27-164 182-319 (343)
12 KOG1716|consensus 99.8 5.6E-20 1.2E-24 150.6 13.9 130 27-158 85-217 (285)
13 PF05706 CDKN3: Cyclin-depende 99.8 9.1E-20 2E-24 135.1 11.6 113 17-131 40-168 (168)
14 PHA02740 protein tyrosine phos 99.8 6.9E-19 1.5E-23 144.6 14.4 138 17-156 90-286 (298)
15 KOG2283|consensus 99.8 3.8E-19 8.2E-24 151.4 11.5 150 5-157 7-174 (434)
16 PHA02742 protein tyrosine phos 99.8 3E-18 6.4E-23 141.5 14.3 139 17-157 92-295 (303)
17 cd00047 PTPc Protein tyrosine 99.8 3.5E-18 7.6E-23 136.0 13.3 137 17-153 40-228 (231)
18 PHA02747 protein tyrosine phos 99.8 8.2E-18 1.8E-22 139.4 15.1 139 17-157 92-298 (312)
19 PHA02746 protein tyrosine phos 99.8 7.9E-18 1.7E-22 140.1 14.5 139 17-157 112-313 (323)
20 smart00194 PTPc Protein tyrosi 99.8 8.6E-18 1.9E-22 136.0 13.9 135 16-153 67-255 (258)
21 PHA02738 hypothetical protein; 99.8 8.6E-18 1.9E-22 139.6 13.2 139 17-157 89-293 (320)
22 KOG0792|consensus 99.7 1.4E-17 3.1E-22 150.3 13.1 137 16-155 936-1127(1144)
23 COG2453 CDC14 Predicted protei 99.7 1.1E-16 2.3E-21 122.9 12.7 99 57-157 66-167 (180)
24 PRK15375 pathogenicity island 99.7 1.9E-16 4E-21 135.2 15.1 141 17-157 333-529 (535)
25 PF00102 Y_phosphatase: Protei 99.6 2.6E-15 5.6E-20 119.2 12.2 136 16-154 40-233 (235)
26 COG5599 PTP2 Protein tyrosine 99.6 3.2E-15 6.9E-20 117.5 10.3 140 13-157 87-293 (302)
27 smart00012 PTPc_DSPc Protein t 99.6 3.5E-15 7.6E-20 103.8 8.9 88 66-153 5-102 (105)
28 smart00404 PTPc_motif Protein 99.6 3.5E-15 7.6E-20 103.8 8.9 88 66-153 5-102 (105)
29 PF03162 Y_phosphatase2: Tyros 99.6 2.7E-15 5.8E-20 113.1 8.5 125 29-157 19-150 (164)
30 TIGR01244 conserved hypothetic 99.6 6.8E-14 1.5E-18 102.4 12.9 105 28-139 13-126 (135)
31 KOG0793|consensus 99.5 2.7E-14 5.9E-19 124.6 9.8 133 16-151 801-988 (1004)
32 KOG0791|consensus 99.5 1E-13 2.2E-18 113.6 12.0 140 17-157 164-353 (374)
33 KOG0790|consensus 99.5 8E-14 1.7E-18 116.4 7.3 137 20-156 326-519 (600)
34 PF13350 Y_phosphatase3: Tyros 99.4 8.2E-13 1.8E-17 99.9 9.5 118 15-134 16-160 (164)
35 KOG4228|consensus 99.4 9.2E-13 2E-17 120.6 10.9 141 16-156 893-1083(1087)
36 KOG4228|consensus 99.3 3.2E-12 6.9E-17 117.1 8.6 140 17-157 607-796 (1087)
37 PLN02727 NAD kinase 99.3 9.9E-12 2.1E-16 112.9 11.4 91 28-122 267-365 (986)
38 PF04273 DUF442: Putative phos 99.3 1.7E-11 3.6E-16 86.3 10.0 85 28-119 13-106 (110)
39 KOG0789|consensus 99.2 2.4E-10 5.2E-15 98.4 13.8 139 18-157 167-366 (415)
40 COG3453 Uncharacterized protei 99.0 4.9E-09 1.1E-13 73.2 11.0 108 17-135 7-123 (130)
41 KOG2386|consensus 99.0 1.9E-09 4.1E-14 90.5 9.8 143 15-157 21-185 (393)
42 PF14566 PTPlike_phytase: Inos 99.0 4.7E-10 1E-14 83.4 5.3 63 56-121 85-147 (149)
43 COG5350 Predicted protein tyro 99.0 6.9E-09 1.5E-13 75.5 9.9 112 30-144 20-142 (172)
44 KOG1572|consensus 99.0 1.3E-08 2.9E-13 79.3 12.1 143 11-157 58-207 (249)
45 COG2365 Protein tyrosine/serin 98.4 6E-07 1.3E-11 72.3 6.5 45 97-141 135-180 (249)
46 PF14671 DSPn: Dual specificit 97.0 0.0017 3.6E-08 47.6 5.5 74 64-138 32-111 (141)
47 PF04179 Init_tRNA_PT: Initiat 96.7 0.056 1.2E-06 47.2 13.2 83 39-122 315-400 (451)
48 KOG4471|consensus 95.8 0.018 4E-07 51.0 5.3 25 95-119 371-395 (717)
49 cd01518 RHOD_YceA Member of th 95.3 0.16 3.4E-06 34.6 7.7 29 96-126 59-87 (101)
50 PLN02160 thiosulfate sulfurtra 94.3 0.27 5.8E-06 35.8 7.0 29 96-126 79-107 (136)
51 cd01523 RHOD_Lact_B Member of 93.0 1 2.2E-05 30.4 7.9 28 97-126 60-87 (100)
52 COG0607 PspE Rhodanese-related 92.3 0.74 1.6E-05 31.4 6.5 76 34-127 11-88 (110)
53 PRK00142 putative rhodanese-re 92.0 1.1 2.3E-05 37.5 8.2 45 80-126 153-197 (314)
54 PRK01415 hypothetical protein; 92.0 0.97 2.1E-05 36.4 7.6 81 33-126 117-197 (247)
55 cd01533 4RHOD_Repeat_2 Member 91.7 2.6 5.6E-05 28.9 8.7 27 97-125 65-91 (109)
56 PF06602 Myotub-related: Myotu 91.7 0.43 9.3E-06 40.5 5.5 24 96-119 229-252 (353)
57 KOG1089|consensus 90.9 0.48 1E-05 42.4 5.2 23 97-119 343-365 (573)
58 PRK05600 thiamine biosynthesis 90.4 1.2 2.6E-05 38.1 7.1 26 99-126 333-358 (370)
59 PRK05320 rhodanese superfamily 89.7 2.7 5.8E-05 34.1 8.3 45 80-126 157-201 (257)
60 cd01522 RHOD_1 Member of the R 89.6 4.3 9.4E-05 28.4 8.5 84 32-125 4-89 (117)
61 KOG1530|consensus 87.4 3.5 7.6E-05 29.8 6.6 75 34-114 29-104 (136)
62 cd01448 TST_Repeat_1 Thiosulfa 86.8 2.4 5.2E-05 29.7 5.7 30 96-126 77-106 (122)
63 cd01528 RHOD_2 Member of the R 84.5 9.9 0.00021 25.5 8.1 28 97-126 57-84 (101)
64 cd01519 RHOD_HSP67B2 Member of 82.4 4.9 0.00011 27.1 5.5 28 97-126 65-92 (106)
65 KOG2836|consensus 81.6 0.91 2E-05 33.0 1.5 28 144-171 143-172 (173)
66 PF00581 Rhodanese: Rhodanese- 81.0 14 0.00031 24.8 7.8 78 33-118 4-86 (113)
67 TIGR03865 PQQ_CXXCW PQQ-depend 80.5 6.9 0.00015 29.3 6.1 29 96-125 114-142 (162)
68 PF04343 DUF488: Protein of un 78.4 16 0.00034 25.8 7.2 41 31-71 2-52 (122)
69 COG1054 Predicted sulfurtransf 76.0 40 0.00087 28.0 9.5 53 72-126 146-198 (308)
70 PF12554 MOZART1: Mitotic-spin 75.7 9.6 0.00021 22.5 4.4 32 107-138 17-48 (48)
71 cd01532 4RHOD_Repeat_1 Member 75.1 6 0.00013 26.2 4.0 29 97-125 49-77 (92)
72 cd01526 RHOD_ThiF Member of th 74.7 26 0.00057 24.4 8.3 28 96-125 70-97 (122)
73 cd01443 Cdc25_Acr2p Cdc25 enzy 74.0 26 0.00056 24.1 7.8 20 97-116 65-84 (113)
74 PRK11784 tRNA 2-selenouridine 72.6 23 0.0005 30.1 7.7 28 97-125 87-114 (345)
75 PRK07411 hypothetical protein; 65.8 19 0.00041 31.1 5.9 28 97-126 341-368 (390)
76 PRK01269 tRNA s(4)U8 sulfurtra 65.7 19 0.00042 31.9 6.2 27 97-125 448-474 (482)
77 PRK12554 undecaprenyl pyrophos 65.3 6.5 0.00014 32.3 2.9 26 106-133 165-191 (276)
78 smart00400 ZnF_CHCC zinc finge 64.8 9.7 0.00021 22.8 3.0 33 101-134 22-54 (55)
79 cd01534 4RHOD_Repeat_3 Member 63.8 12 0.00025 24.8 3.6 28 97-126 55-82 (95)
80 cd01521 RHOD_PspE2 Member of t 63.6 14 0.00031 25.2 4.0 30 96-125 62-91 (110)
81 TIGR02764 spore_ybaN_pdaB poly 62.2 66 0.0014 24.3 8.8 27 25-51 15-41 (191)
82 cd01447 Polysulfide_ST Polysul 61.4 13 0.00028 24.8 3.4 27 97-125 60-86 (103)
83 cd01530 Cdc25 Cdc25 phosphatas 60.7 12 0.00026 26.4 3.2 25 96-121 66-90 (121)
84 TIGR00753 undec_PP_bacA undeca 60.7 9.8 0.00021 30.9 3.1 26 106-133 159-185 (255)
85 cd01531 Acr2p Eukaryotic arsen 59.9 53 0.0011 22.4 7.7 19 97-115 61-79 (113)
86 TIGR02981 phageshock_pspE phag 59.6 15 0.00033 25.0 3.6 27 97-125 57-83 (101)
87 PRK00281 undecaprenyl pyrophos 59.4 11 0.00023 30.8 3.2 27 105-133 162-189 (268)
88 cd01449 TST_Repeat_2 Thiosulfa 56.4 49 0.0011 22.6 5.9 27 97-125 77-103 (118)
89 COG1660 Predicted P-loop-conta 55.8 12 0.00026 30.5 2.8 18 100-117 245-262 (286)
90 cd01525 RHOD_Kc Member of the 55.5 20 0.00044 24.0 3.7 26 98-125 65-90 (105)
91 TIGR03167 tRNA_sel_U_synt tRNA 54.6 52 0.0011 27.5 6.5 26 99-125 75-100 (311)
92 cd01529 4RHOD_Repeats Member o 54.3 23 0.00049 23.4 3.7 29 96-126 54-82 (96)
93 PRK09875 putative hydrolase; P 53.5 1.3E+02 0.0028 24.9 9.6 46 7-52 2-57 (292)
94 PRK00162 glpE thiosulfate sulf 53.2 68 0.0015 21.6 9.0 28 97-126 57-84 (108)
95 PRK10287 thiosulfate:cyanide s 52.7 28 0.00061 23.9 4.0 27 97-125 59-85 (104)
96 PRK11493 sseA 3-mercaptopyruva 51.1 74 0.0016 25.9 6.9 28 96-125 229-256 (281)
97 KOG3824|consensus 50.1 1.1E+02 0.0025 25.8 7.6 68 60-127 315-398 (472)
98 cd01520 RHOD_YbbB Member of th 49.6 30 0.00065 24.4 3.9 28 96-125 84-112 (128)
99 PRK08762 molybdopterin biosynt 49.6 1.7E+02 0.0036 25.0 9.1 95 20-125 59-159 (376)
100 COG1968 BacA Undecaprenyl pyro 49.5 20 0.00043 29.3 3.1 24 107-132 165-189 (270)
101 PF03668 ATP_bind_2: P-loop AT 49.3 43 0.00093 27.6 5.1 18 100-117 244-261 (284)
102 PF01807 zf-CHC2: CHC2 zinc fi 48.9 24 0.00052 23.9 3.1 35 102-137 54-88 (97)
103 cd01444 GlpE_ST GlpE sulfurtra 48.4 36 0.00078 22.2 3.9 27 97-125 55-81 (96)
104 PRK12446 undecaprenyldiphospho 48.3 1.7E+02 0.0036 24.7 9.1 102 20-121 5-113 (352)
105 PRK10302 hypothetical protein; 48.0 1.5E+02 0.0033 24.2 11.1 98 9-113 125-242 (272)
106 cd01527 RHOD_YgaP Member of th 47.0 39 0.00084 22.3 4.0 28 96-125 52-79 (99)
107 PF03861 ANTAR: ANTAR domain; 45.2 32 0.0007 20.6 3.0 21 116-136 18-39 (56)
108 COG1111 MPH1 ERCC4-like helica 45.0 1E+02 0.0022 27.7 6.9 96 18-118 164-260 (542)
109 PF13579 Glyco_trans_4_4: Glyc 44.2 62 0.0013 22.6 5.0 74 32-107 8-81 (160)
110 cd05567 PTS_IIB_mannitol PTS_I 44.0 25 0.00055 23.1 2.6 17 100-117 2-18 (87)
111 TIGR00853 pts-lac PTS system, 41.7 25 0.00055 23.7 2.3 18 98-116 3-20 (95)
112 PF10302 DUF2407: DUF2407 ubiq 40.9 17 0.00037 24.8 1.4 10 99-108 86-95 (97)
113 TIGR03568 NeuC_NnaA UDP-N-acet 39.7 1.5E+02 0.0033 25.1 7.3 101 20-120 5-116 (365)
114 PF06838 Met_gamma_lyase: Meth 39.5 2E+02 0.0044 24.9 7.7 70 57-141 122-191 (403)
115 PRK05416 glmZ(sRNA)-inactivati 38.9 58 0.0012 26.9 4.4 18 100-117 247-264 (288)
116 PF08114 PMP1_2: ATPase proteo 38.4 10 0.00022 21.4 -0.0 28 96-125 6-33 (43)
117 PF02673 BacA: Bacitracin resi 38.4 42 0.00091 27.3 3.5 27 106-133 159-185 (259)
118 PRK09629 bifunctional thiosulf 37.1 2.4E+02 0.0052 26.0 8.5 18 96-114 221-238 (610)
119 PF02126 PTE: Phosphotriestera 36.9 1.5E+02 0.0032 24.8 6.6 31 97-128 154-184 (308)
120 smart00450 RHOD Rhodanese Homo 36.5 1.1E+02 0.0024 19.4 5.1 30 95-126 53-82 (100)
121 PHA03338 US22 family homolog; 36.2 37 0.0008 28.0 2.8 39 102-140 160-200 (344)
122 cd03174 DRE_TIM_metallolyase D 35.8 2.2E+02 0.0048 22.5 7.6 74 33-110 119-202 (265)
123 cd00158 RHOD Rhodanese Homolog 34.5 77 0.0017 19.9 3.8 27 96-124 48-74 (89)
124 COG0794 GutQ Predicted sugar p 34.3 91 0.002 24.4 4.6 21 98-121 39-59 (202)
125 PRK11493 sseA 3-mercaptopyruva 32.4 1.3E+02 0.0029 24.4 5.6 29 96-125 85-113 (281)
126 PRK15043 transcriptional regul 31.6 1.6E+02 0.0034 23.8 5.6 62 96-157 160-235 (243)
127 cd01524 RHOD_Pyr_redox Member 30.2 95 0.0021 20.0 3.7 27 97-125 50-76 (90)
128 PF02302 PTS_IIB: PTS system, 29.8 32 0.00069 22.4 1.3 15 100-114 1-15 (90)
129 TIGR02689 ars_reduc_gluta arse 28.3 2.1E+02 0.0046 20.0 6.0 29 64-92 93-121 (126)
130 PF00762 Ferrochelatase: Ferro 28.2 1.4E+02 0.0031 24.9 5.2 46 29-74 241-300 (316)
131 cd01535 4RHOD_Repeat_4 Member 27.7 1.1E+02 0.0023 22.3 3.9 27 97-125 48-74 (145)
132 TIGR02691 arsC_pI258_fam arsen 27.4 2.3E+02 0.0049 20.1 6.0 28 64-91 91-124 (129)
133 TIGR00204 dxs 1-deoxy-D-xylulo 27.0 92 0.002 28.7 4.1 46 58-112 233-278 (617)
134 PF10727 Rossmann-like: Rossma 26.8 46 0.00099 23.8 1.7 31 81-112 80-110 (127)
135 PF07632 DUF1593: Protein of u 26.7 1.3E+02 0.0027 24.6 4.4 62 89-153 105-169 (260)
136 PF13292 DXP_synthase_N: 1-deo 25.9 87 0.0019 25.6 3.3 41 57-106 229-269 (270)
137 KOG1004|consensus 25.8 1.8E+02 0.0038 23.0 4.8 38 97-136 184-222 (230)
138 PF03701 UPF0181: Uncharacteri 25.7 91 0.002 18.5 2.5 18 119-136 22-39 (51)
139 PF00682 HMGL-like: HMGL-like 25.5 3.3E+02 0.0071 21.2 7.2 76 32-111 111-194 (237)
140 PLN02723 3-mercaptopyruvate su 25.5 1.8E+02 0.004 24.2 5.4 28 96-125 267-294 (320)
141 COG1448 TyrB Aspartate/tyrosin 24.5 2.4E+02 0.0051 24.5 5.7 86 16-105 91-179 (396)
142 COG0381 WecB UDP-N-acetylgluco 24.2 2.7E+02 0.0059 24.1 6.1 83 30-116 18-107 (383)
143 TIGR01133 murG undecaprenyldip 23.7 4E+02 0.0087 21.7 10.1 88 20-109 4-100 (348)
144 PF02571 CbiJ: Precorrin-6x re 23.6 98 0.0021 24.9 3.3 61 8-70 162-226 (249)
145 COG0084 TatD Mg-dependent DNas 23.5 2E+02 0.0043 23.3 5.0 32 80-116 112-143 (256)
146 PLN02150 terpene synthase/cycl 23.2 1E+02 0.0023 20.8 2.9 46 112-157 6-64 (96)
147 PF12091 DUF3567: Protein of u 22.8 1.1E+02 0.0023 20.4 2.7 25 76-104 61-85 (85)
148 COG3414 SgaB Phosphotransferas 22.7 71 0.0015 21.6 2.0 17 100-116 3-19 (93)
149 PRK00726 murG undecaprenyldiph 22.6 4.4E+02 0.0095 21.7 10.8 40 33-72 20-59 (357)
150 TIGR03217 4OH_2_O_val_ald 4-hy 22.5 4.7E+02 0.01 22.0 10.1 77 33-112 118-202 (333)
151 cd01445 TST_Repeats Thiosulfat 22.4 3E+02 0.0065 19.7 5.4 30 96-125 93-123 (138)
152 PRK05114 hypothetical protein; 22.1 1.1E+02 0.0025 18.7 2.5 18 119-136 22-39 (59)
153 PRK13530 arsenate reductase; P 22.0 2.8E+02 0.006 19.7 5.1 29 64-92 96-124 (133)
154 COG4770 Acetyl/propionyl-CoA c 22.0 1.5E+02 0.0033 27.1 4.3 35 97-138 151-185 (645)
155 COG1438 ArgR Arginine represso 21.9 3.4E+02 0.0074 20.1 7.6 91 29-126 21-117 (150)
156 PRK11449 putative deoxyribonuc 21.9 1.4E+02 0.0031 24.0 4.0 15 97-111 126-140 (258)
157 PRK08199 thiamine pyrophosphat 21.8 5.9E+02 0.013 22.9 8.3 30 24-53 3-33 (557)
158 PLN02321 2-isopropylmalate syn 21.7 6.6E+02 0.014 23.4 9.1 78 33-111 214-300 (632)
159 COG3707 AmiR Response regulato 21.7 1.1E+02 0.0023 23.8 2.9 19 118-136 152-171 (194)
160 PRK07414 cob(I)yrinic acid a,c 21.6 1.6E+02 0.0036 22.4 3.9 24 97-120 20-43 (178)
161 COG3140 Uncharacterized protei 21.5 88 0.0019 18.9 1.9 17 120-136 23-39 (60)
162 COG0422 ThiC Thiamine biosynth 21.4 2.8E+02 0.006 24.1 5.5 121 29-153 75-246 (432)
163 PRK14738 gmk guanylate kinase; 21.2 2.7E+02 0.0059 21.3 5.3 37 5-42 1-37 (206)
164 PRK10310 PTS system galactitol 21.1 75 0.0016 21.3 1.8 15 100-114 4-18 (94)
165 COG1154 Dxs Deoxyxylulose-5-ph 21.1 1.4E+02 0.0029 27.6 3.8 46 58-112 238-283 (627)
166 TIGR01550 DOC_P1 death-on-curi 20.9 2.8E+02 0.006 19.5 4.8 36 106-141 68-108 (121)
167 PF13625 Helicase_C_3: Helicas 20.7 3E+02 0.0064 19.4 5.0 37 121-157 51-87 (129)
168 PRK09590 celB cellobiose phosp 20.7 91 0.002 21.5 2.2 13 100-112 3-15 (104)
169 PRK08195 4-hyroxy-2-oxovalerat 20.7 5.2E+02 0.011 21.8 9.9 77 33-112 119-203 (337)
170 PF14488 DUF4434: Domain of un 20.4 3.7E+02 0.0081 20.0 5.9 67 29-106 20-86 (166)
171 PF00580 UvrD-helicase: UvrD/R 20.0 2.2E+02 0.0048 22.7 4.8 32 97-128 12-46 (315)
No 1
>KOG2836|consensus
Probab=100.00 E-value=1.8e-43 Score=248.73 Aligned_cols=170 Identities=62% Similarity=1.085 Sum_probs=160.4
Q ss_pred CCCCCCCceeeeeeCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCCCCHHHH
Q psy12442 3 QKDIRPAPAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELV 82 (208)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~p~~~~~ 82 (208)
++|+||+|++|+|+++||++|.+|.+.++..++++|+++|+++||.+|+..|+...++..|+.++.||.+|+.+|+.+.+
T Consensus 2 a~mnrPAPveIsy~~MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv 81 (173)
T KOG2836|consen 2 ARMNRPAPVEISYKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQVV 81 (173)
T ss_pred CcccCCCCeeeeccceEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhHhhhhhhc
Q psy12442 83 DEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQKRRGAINSKQIAFLEKYKPKSRLKLK 162 (208)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~vr~~R~~~~~~~q~~~l~~~~~~~~~~~~ 162 (208)
.++.+.+...+++.++..|.|||.+|+||...++|..|++.||..++|++++|++|.
T Consensus 82 ~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave~ir~krr----------------------- 138 (173)
T KOG2836|consen 82 DDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVEMIRQKRR----------------------- 138 (173)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHHHHHHHhh-----------------------
Confidence 999998887777888999999999999999999999999999999999999988764
Q ss_pred cCCCCcchhhhhhccccchhhhhhhhcCCcccccccC--CCCCCcccC
Q psy12442 163 NGQKNSCCLQKRRGAINSKQIAFLEKYKPKSRLKLKN--GQKNSCCLQ 208 (208)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~k~i~~~~~~~~k~rl~~~~--~~~~~~~~~ 208 (208)
|++|++|+.|+++|+||.|||+++ ||+++||||
T Consensus 139 -------------ga~n~kql~~lekyrpk~rlr~k~~~gh~~~ccvq 173 (173)
T KOG2836|consen 139 -------------GAINSKQLLYLEKYRPKMRLRFKDPNGHKNSCCVQ 173 (173)
T ss_pred -------------ccccHHHHHHHHHhCccceeeccCCCCCccccccC
Confidence 456688899999999999999985 889999998
No 2
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=6.4e-34 Score=222.10 Aligned_cols=148 Identities=44% Similarity=0.827 Sum_probs=140.5
Q ss_pred CCceeeeeeCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCCCCHHHHHHHHH
Q psy12442 8 PAPAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFE 87 (208)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~ 87 (208)
|.+..|+++..|||+++.|.+..+..+++.|+++||++||++++..|+.+.+...|++|+++|++|+.+|+.+.+.+|++
T Consensus 82 ~~~~~ie~~~~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~ 161 (241)
T PTZ00393 82 NHPTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWLT 161 (241)
T ss_pred ccchhhccCceeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhHhh
Q psy12442 88 FLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQKRRGAINSKQIAFLEKYKPKS 157 (208)
Q Consensus 88 ~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~vr~~R~~~~~~~q~~~l~~~~~~~ 157 (208)
+++..+. .+++|+|||.+|+||||+++|+|||+.|+++++|++++|++||++++..|++||..|++..
T Consensus 162 ~i~~~l~--~g~~VaVHC~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPgAIn~~Q~~fL~~y~~~~ 229 (241)
T PTZ00393 162 IVNNVIK--NNRAVAVHCVAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKGAINKRQLQFLKAYKKKK 229 (241)
T ss_pred HHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Confidence 9988753 6889999999999999999999999999999999999999999999999999999999875
No 3
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1.8e-33 Score=212.56 Aligned_cols=148 Identities=49% Similarity=0.899 Sum_probs=137.1
Q ss_pred ceeeeeeCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCCCCHHHHHHHHHHH
Q psy12442 10 PAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFL 89 (208)
Q Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i 89 (208)
.-.++|++.||++++.|.+..+..+++.|+++||++||+++++.|+.+.+...|++|++||++|+.+|+.+.+..|++++
T Consensus 8 ~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i 87 (166)
T PTZ00242 8 DRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLL 87 (166)
T ss_pred CcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999988888888888999999999999999999999999999
Q ss_pred Hhhhhh--CCCCcEEEEcCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhHhh
Q psy12442 90 KSVFRE--DPDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGAINSKQIAFLEKYKPKS 157 (208)
Q Consensus 90 ~~~l~~--~~~~~vlVHC~~G~~RSg~~~~~~l~~-~~~~~~~a~~~vr~~R~~~~~~~q~~~l~~~~~~~ 157 (208)
++.+.. ..+++|+|||.+|+||||++|++|||+ .++++++|++.++++||++++..|++||.+|.+..
T Consensus 88 ~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i~~~Q~~~l~~~~~~~ 158 (166)
T PTZ00242 88 DQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAINQTQLQFLKKYKPRK 158 (166)
T ss_pred HHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCchHHHHHHHHHHHHHh
Confidence 888653 568999999999999999999999998 56999999999999999999889999999999765
No 4
>KOG1720|consensus
Probab=99.93 E-value=4.2e-25 Score=167.35 Aligned_cols=121 Identities=30% Similarity=0.550 Sum_probs=110.5
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCc
Q psy12442 32 PNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGR 111 (208)
Q Consensus 32 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~R 111 (208)
...+..+++++|+++|.|+...|+.+.+...|+..+++|++|+.+|+++.+.+|++.++.... ++.|.|||.+|+||
T Consensus 84 ~~~~~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~---~g~iaVHCkaGlGR 160 (225)
T KOG1720|consen 84 QPYIQYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEK---GGKIAVHCKAGLGR 160 (225)
T ss_pred hhHHHHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHh---cCeEEEEeccCCCc
Confidence 456777889999999999999999999999999999999999999999999999999998843 89999999999999
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHhH
Q psy12442 112 APVMVALALIE-LGLKYEDAVELIRQKRRGAIN-SKQIAFLEKYKP 155 (208)
Q Consensus 112 Sg~~~~~~l~~-~~~~~~~a~~~vr~~R~~~~~-~~q~~~l~~~~~ 155 (208)
||+++|||||+ +|+++.||++++|..||++|. +.|...++++..
T Consensus 161 TG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 161 TGTLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 99999999998 899999999999999999985 566666666665
No 5
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.93 E-value=1.5e-24 Score=159.61 Aligned_cols=124 Identities=21% Similarity=0.295 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCC-CCCCHHHHHHHHHHHHhhhhhCCCCcEEEEc
Q psy12442 27 TDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDG-TSPSPELVDEWFEFLKSVFREDPDTCVAVHC 105 (208)
Q Consensus 27 ~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~-~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC 105 (208)
|+.+.+.+++.|+++||++||||++.... ....+++|+++|+.|. ..+..+.+..++++|+... ..+++|+|||
T Consensus 11 G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~--~~~~~VlVHC 85 (138)
T smart00195 11 GSYSSALNLALLKKLGITHVINVTNEVPN---LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAE--KKGGKVLVHC 85 (138)
T ss_pred CChhHcCCHHHHHHcCCCEEEEccCCCCC---CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHh--cCCCeEEEEC
Confidence 44444557899999999999999986442 2346899999999994 4556678888889988873 4688999999
Q ss_pred CCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHhCCCC-CCHHHHHHHHHHhH
Q psy12442 106 VAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGA-INSKQIAFLEKYKP 155 (208)
Q Consensus 106 ~~G~~RSg~~~~~~l~~-~~~~~~~a~~~vr~~R~~~-~~~~q~~~l~~~~~ 155 (208)
.+|.||||+++++|||. .||++++|+++++++||.+ ++.+|+++|..|++
T Consensus 86 ~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 86 QAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred CCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 99999999999999997 8999999999999999987 57899999999985
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.92 E-value=1.3e-24 Score=158.76 Aligned_cols=124 Identities=28% Similarity=0.389 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCC-CCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCC
Q psy12442 29 LTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYED-GTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVA 107 (208)
Q Consensus 29 ~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d-~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~ 107 (208)
...+. .+.++++||++|||++............++.|+++|+.| ...+..+.+..++++|+.+.. .+++|+|||.+
T Consensus 6 ~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~ 82 (133)
T PF00782_consen 6 YPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAIS--EGGKVLVHCKA 82 (133)
T ss_dssp HHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHH--TTSEEEEEESS
T ss_pred HHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhc--ccceeEEEeCC
Confidence 34455 889999999999999986543334556689999999999 666677888999999998743 68899999999
Q ss_pred CCCcHHHHHHHHHHH-cCCCHHHHHHHHHHhCCCCC-CHHHHHHHHHHhH
Q psy12442 108 GLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGAI-NSKQIAFLEKYKP 155 (208)
Q Consensus 108 G~~RSg~~~~~~l~~-~~~~~~~a~~~vr~~R~~~~-~~~q~~~l~~~~~ 155 (208)
|+||||+++++|||. .+|++++|++++++.||.+. +..|+++|.+|++
T Consensus 83 G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 83 GLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp SSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 999999999999998 89999999999999998875 6799999999986
No 7
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.91 E-value=2.3e-23 Score=153.13 Aligned_cols=125 Identities=25% Similarity=0.327 Sum_probs=105.0
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCC-CCHHHHHHHHHHHHhhhhhCCCCcEEEEc
Q psy12442 27 TDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTS-PSPELVDEWFEFLKSVFREDPDTCVAVHC 105 (208)
Q Consensus 27 ~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~-p~~~~~~~~~~~i~~~l~~~~~~~vlVHC 105 (208)
|+.+.+.+.+.|+++||++||||++..+. ......++.|+++|+.|... +....+..++++++.... .++||+|||
T Consensus 12 g~~~~~~d~~~L~~~gi~~VI~l~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~--~~~~vlVHC 88 (139)
T cd00127 12 GSYPAASDKELLKKLGITHVLNVAKEVPN-ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDARE--KGGKVLVHC 88 (139)
T ss_pred CChhHhcCHHHHHHcCCCEEEEcccCCCC-cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHh--cCCcEEEEC
Confidence 45555668899999999999999986553 34556789999999999663 445677788888887743 578999999
Q ss_pred CCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHhCCCC-CCHHHHHHHHHHh
Q psy12442 106 VAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGA-INSKQIAFLEKYK 154 (208)
Q Consensus 106 ~~G~~RSg~~~~~~l~~-~~~~~~~a~~~vr~~R~~~-~~~~q~~~l~~~~ 154 (208)
.+|.|||++++++|+|. .++++++|+++++++||.+ ++.+|.++|.+|+
T Consensus 89 ~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 89 LAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999997 8999999999999999986 4889999999885
No 8
>KOG1718|consensus
Probab=99.90 E-value=2.5e-23 Score=152.42 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=119.4
Q ss_pred CHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCC-CCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCC
Q psy12442 30 TIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDG-TSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAG 108 (208)
Q Consensus 30 ~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~-~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G 108 (208)
-.+.+-..|++++|++|||...+... ....+++|..+|+.|. ..+..++|+...+.|+.. ...+|.+||||.||
T Consensus 30 vaA~~k~~l~~~~It~IiNat~E~pn---~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v--~~~gG~TLvHC~AG 104 (198)
T KOG1718|consen 30 VAANDKLLLKKRKITCIINATTEVPN---TSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSV--IMRGGKTLVHCVAG 104 (198)
T ss_pred ccccCHHHHHhcCceEEEEcccCCCC---ccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHH--HhcCCcEEEEEccc
Confidence 33456678899999999999886432 2334789999999994 455667788888888777 45789999999999
Q ss_pred CCcHHHHHHHHHHH-cCCCHHHHHHHHHHhCCCC-CCHHHHHHHHHHhHhhhhhhccCC--CCcchhhhhhccccchhhh
Q psy12442 109 LGRAPVMVALALIE-LGLKYEDAVELIRQKRRGA-INSKQIAFLEKYKPKSRLKLKNGQ--KNSCCLQKRRGAINSKQIA 184 (208)
Q Consensus 109 ~~RSg~~~~~~l~~-~~~~~~~a~~~vr~~R~~~-~~~~q~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~i~ 184 (208)
++||+++|.+|||+ .++++.||..+++++||.+ +|.+|+++|-+|+.+++ +.+.. ...-..++...+..+++..
T Consensus 105 VSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~--g~~sV~MV~~p~~d~~iPDvye~e~R 182 (198)
T KOG1718|consen 105 VSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLF--GNASVRMVQTPVGDQLIPDVYEKEAR 182 (198)
T ss_pred cchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhc--CCCeEEEEeccccCccCchhhcccch
Confidence 99999999999998 7999999999999999997 68899999999999873 32220 0000112344566677666
Q ss_pred hhhhcCCccc
Q psy12442 185 FLEKYKPKSR 194 (208)
Q Consensus 185 ~~~~~~~k~r 194 (208)
-+..+....|
T Consensus 183 ~m~~~~~~~r 192 (198)
T KOG1718|consen 183 PMIPEQDINR 192 (198)
T ss_pred hccccccccc
Confidence 6655554443
No 9
>PRK12361 hypothetical protein; Provisional
Probab=99.88 E-value=2.6e-21 Score=171.61 Aligned_cols=149 Identities=24% Similarity=0.369 Sum_probs=119.5
Q ss_pred CCCCCCceeeeeeCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCCCC-ccccccCCeEEEEeecCCCCCCCHHHH
Q psy12442 4 KDIRPAPAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYK-VEDLKTEGINVKDLAYEDGTSPSPELV 82 (208)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~-~~~~~~~g~~~~~~p~~d~~~p~~~~~ 82 (208)
.+..|+..+|+ +.-|+ |+...+.+++.|+++||++|||++.+... +......+++|+++|+.|...|+.+.+
T Consensus 89 ~~~~~~~~~I~--~~l~l-----G~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~~l 161 (547)
T PRK12361 89 RDSVPAIQKID--ENLYL-----GCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQL 161 (547)
T ss_pred ccCCCcceEEc--CcEEE-----CCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHHHH
Confidence 34556666655 34444 44555678899999999999999864221 112234578999999999988999999
Q ss_pred HHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHH--cCCCHHHHHHHHHHhCCCCC-CHHHHHHHHHHhHhhhh
Q psy12442 83 DEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE--LGLKYEDAVELIRQKRRGAI-NSKQIAFLEKYKPKSRL 159 (208)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~--~~~~~~~a~~~vr~~R~~~~-~~~q~~~l~~~~~~~~~ 159 (208)
.+++++|++..+ .+++|+|||.+|.|||++++++|||. .++++++|++.++++||.+. |+.|+++|.+|.+...+
T Consensus 162 ~~a~~~i~~~~~--~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~ 239 (547)
T PRK12361 162 NQAINWIHRQVR--ANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKL 239 (547)
T ss_pred HHHHHHHHHHHH--CCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Confidence 999999998844 57899999999999999999999996 47999999999999999975 88999999999877644
Q ss_pred hh
Q psy12442 160 KL 161 (208)
Q Consensus 160 ~~ 161 (208)
..
T Consensus 240 ~~ 241 (547)
T PRK12361 240 NI 241 (547)
T ss_pred cc
Confidence 33
No 10
>KOG1719|consensus
Probab=99.86 E-value=3.3e-21 Score=139.37 Aligned_cols=124 Identities=27% Similarity=0.307 Sum_probs=110.0
Q ss_pred HHHHHHHhCCCcEEEEecCCCC---CccccccCCeEEEEeecCC-CCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCC
Q psy12442 33 NYILELKKHQVKNVVRVCEPTY---KVEDLKTEGINVKDLAYED-GTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAG 108 (208)
Q Consensus 33 ~~~~~l~~~gi~~Vv~l~~~~~---~~~~~~~~g~~~~~~p~~d-~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G 108 (208)
.+.+.+++.|+..||.++++.. ....|...|++++.+|..| ...|+.+.+...++||++.. .-|..|+|||.||
T Consensus 42 ~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a--sLGktvYVHCKAG 119 (183)
T KOG1719|consen 42 MDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA--SLGKTVYVHCKAG 119 (183)
T ss_pred ccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc--ccCCeEEEEecCC
Confidence 5778899999999999998531 1247889999999999999 56789999999999999884 4578999999999
Q ss_pred CCcHHHHHHHHHHH-cCCCHHHHHHHHHHhCCCCC-CHHHHHHHHHHhHhhh
Q psy12442 109 LGRAPVMVALALIE-LGLKYEDAVELIRQKRRGAI-NSKQIAFLEKYKPKSR 158 (208)
Q Consensus 109 ~~RSg~~~~~~l~~-~~~~~~~a~~~vr~~R~~~~-~~~q~~~l~~~~~~~~ 158 (208)
.+||+|+++||||. .+|++++|++++|..||.+. .++|+.-+.+|...+-
T Consensus 120 RtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~ 171 (183)
T KOG1719|consen 120 RTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIV 171 (183)
T ss_pred CccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHH
Confidence 99999999999997 89999999999999999974 8899999999988773
No 11
>KOG1717|consensus
Probab=99.85 E-value=1.1e-20 Score=147.80 Aligned_cols=134 Identities=20% Similarity=0.283 Sum_probs=111.2
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEecCCCCCcccc-ccCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhhhCCCCcEEEE
Q psy12442 27 TDLTIPNYILELKKHQVKNVVRVCEPTYKVEDL-KTEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFREDPDTCVAVH 104 (208)
Q Consensus 27 ~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~-~~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~~~~~~vlVH 104 (208)
|....+...+.|+++||++|||+++.. +..+ ....+.|..||+.|+... ....|.+++.+|++... ++..||||
T Consensus 182 g~a~ds~NldvLkk~gI~yviNVTpnl--pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArs--k~cgvLVH 257 (343)
T KOG1717|consen 182 GCAKDSTNLDVLKKYGIKYVINVTPNL--PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARS--KNCGVLVH 257 (343)
T ss_pred ccccccccHHHHHhcCceEEEecCCCC--cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhc--cCCcEEEe
Confidence 556777899999999999999998742 1222 233588999999996544 56789999999999944 56779999
Q ss_pred cCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHhCCCC-CCHHHHHHHHHHhHhhhhhhccC
Q psy12442 105 CVAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGA-INSKQIAFLEKYKPKSRLKLKNG 164 (208)
Q Consensus 105 C~~G~~RSg~~~~~~l~~-~~~~~~~a~~~vr~~R~~~-~~~~q~~~l~~~~~~~~~~~~~~ 164 (208)
|.+|++||+|++++|||. ...++.+|+++|+.++..+ +|-.|+.||.+|+..+.+.....
T Consensus 258 ClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s~~~ 319 (343)
T KOG1717|consen 258 CLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLESRCD 319 (343)
T ss_pred eeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccCccc
Confidence 999999999999999997 8999999999999998775 57899999999999986555443
No 12
>KOG1716|consensus
Probab=99.84 E-value=5.6e-20 Score=150.59 Aligned_cols=130 Identities=25% Similarity=0.301 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCC-CCHHHHHHHHHHHHhhhhhCCCCcEEEEc
Q psy12442 27 TDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTS-PSPELVDEWFEFLKSVFREDPDTCVAVHC 105 (208)
Q Consensus 27 ~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~-p~~~~~~~~~~~i~~~l~~~~~~~vlVHC 105 (208)
|....+.+.+.++++||++|+|+.............++.|..+|+.|... .....+.+.+.+|+.+. ..++.|||||
T Consensus 85 g~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~--~~~~~vlVHC 162 (285)
T KOG1716|consen 85 GSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAR--EKGGKVLVHC 162 (285)
T ss_pred cCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHH--hCCCeEEEEc
Confidence 33446778899999999999999885332211222278999999999544 44568999999999984 4689999999
Q ss_pred CCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHhCCCC-CCHHHHHHHHHHhHhhh
Q psy12442 106 VAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGA-INSKQIAFLEKYKPKSR 158 (208)
Q Consensus 106 ~~G~~RSg~~~~~~l~~-~~~~~~~a~~~vr~~R~~~-~~~~q~~~l~~~~~~~~ 158 (208)
.+|++||+++++||||+ .+|++++|+++|+++|+.+ +|.+++.+|.+|+..+.
T Consensus 163 ~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~ 217 (285)
T KOG1716|consen 163 QAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLS 217 (285)
T ss_pred CCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhc
Confidence 99999999999999998 8999999999999999997 68999999999999884
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.83 E-value=9.1e-20 Score=135.11 Aligned_cols=113 Identities=26% Similarity=0.294 Sum_probs=78.7
Q ss_pred CceEEEeCCCCC------CCHHHHHHHHHhCCCcEEEEecCCC----C----CccccccCCeEEEEeecCCCCCCCHHHH
Q psy12442 17 GFKFLITDRPTD------LTIPNYILELKKHQVKNVVRVCEPT----Y----KVEDLKTEGINVKDLAYEDGTSPSPELV 82 (208)
Q Consensus 17 ~~~~~~~~~p~~------~~~~~~~~~l~~~gi~~Vv~l~~~~----~----~~~~~~~~g~~~~~~p~~d~~~p~~~~~ 82 (208)
..+++++.+||- .++..|++.|+++|++.||.+.+.. | -.+.+...|+.|+|+|++|..+|+.+..
T Consensus 40 ~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~ 119 (168)
T PF05706_consen 40 SGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAA 119 (168)
T ss_dssp SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHH
T ss_pred cceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHH
Confidence 468999999993 6899999999999999999999831 1 1356678899999999999999987777
Q ss_pred HHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHc--CCCHHHHH
Q psy12442 83 DEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIEL--GLKYEDAV 131 (208)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~--~~~~~~a~ 131 (208)
..++..+...+. .++.|+|||.+|.||||+++|++|+.. .+++++|+
T Consensus 120 ~~i~~eL~~~L~--~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 120 WQILEELAARLE--NGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHH--TT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHH--cCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 777777777765 588999999999999999999999874 58999886
No 14
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.81 E-value=6.9e-19 Score=144.61 Aligned_cols=138 Identities=14% Similarity=0.238 Sum_probs=104.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCC-------CCCcc--------------------------------
Q psy12442 17 GFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEP-------TYKVE-------------------------------- 57 (208)
Q Consensus 17 ~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~-------~~~~~-------------------------------- 57 (208)
..+||++++|...+..++|+.+++.++..||+|+.. .|-+.
T Consensus 90 ~~~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e~kc~~~YWP~~~~~~~~~g~f~V~~~~~~~~~~~~~~~l~l~ 169 (298)
T PHA02740 90 EQKFICIINLCEDACDKFLQALSDNKVQIIVLISRHADKKCFNQFWSLKEGCVITSDKFQIETLEIIIKPHFNLTLLSLT 169 (298)
T ss_pred CCcEEEecCCchhhHHHHHHHHHhcCCCEEEEccccccccccccCCCCCCCCeEEECCEEEEEEEEEecCCEEEEEEEEE
Confidence 568999999999999999999999999999999862 22110
Q ss_pred -----ccccCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhh-------hCCCCcEEEEcCCCCCcHHHHHHHHHHH--
Q psy12442 58 -----DLKTEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFR-------EDPDTCVAVHCVAGLGRAPVMVALALIE-- 122 (208)
Q Consensus 58 -----~~~~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~-------~~~~~~vlVHC~~G~~RSg~~~~~~l~~-- 122 (208)
.-....++|..|| |++.| +...+.+|+..|++... ....+||+|||++|+||||++||..++.
T Consensus 170 ~~~~~~r~V~Hfqyt~WP--d~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~ 247 (298)
T PHA02740 170 DKFGQAQKISHFQYTAWP--ADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATE 247 (298)
T ss_pred cCCCCcEEEEEEeecCCC--CCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHH
Confidence 0001123444555 65544 67788888888776431 1235799999999999999999988642
Q ss_pred ----cCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHhHh
Q psy12442 123 ----LGLKYEDAVELIRQKRRGAIN-SKQIAFLEKYKPK 156 (208)
Q Consensus 123 ----~~~~~~~a~~~vr~~R~~~~~-~~q~~~l~~~~~~ 156 (208)
...+..+++..+|++|+++++ ..||.|+++.-..
T Consensus 248 ~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~ 286 (298)
T PHA02740 248 FDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCYHLIAA 286 (298)
T ss_pred HHhcCcccHHHHHHHHHhhCccccCCHHHHHHHHHHHHH
Confidence 346889999999999999985 5999999875433
No 15
>KOG2283|consensus
Probab=99.80 E-value=3.8e-19 Score=151.42 Aligned_cols=150 Identities=22% Similarity=0.382 Sum_probs=127.3
Q ss_pred CCCCCceeeeeeCceEEEeCCCCC-------CCHHHHHHHHH--hCCCcEEEEec-CCCCCccccccCCeEEEEeecCCC
Q psy12442 5 DIRPAPAEIEFKGFKFLITDRPTD-------LTIPNYILELK--KHQVKNVVRVC-EPTYKVEDLKTEGINVKDLAYEDG 74 (208)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~l~--~~gi~~Vv~l~-~~~~~~~~~~~~g~~~~~~p~~d~ 74 (208)
...-+.++++|.+.|+|+++.|.+ ..+.+-..+|. ..+--.|.||+ +..|+...+.. ++..++|+|+
T Consensus 7 ~~~~~DLDltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g---~V~~~~~~Dh 83 (434)
T KOG2283|consen 7 NEGGFDLDLTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHG---RVARFGFDDH 83 (434)
T ss_pred hhccccccceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCcccccc---ceeecCCCCC
Confidence 445678999999999999999997 35556666663 33566799999 77788777763 5777999999
Q ss_pred CCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCC--CHHHHHHHHHHhC---C---CCCCHHH
Q psy12442 75 TSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGL--KYEDAVELIRQKR---R---GAINSKQ 146 (208)
Q Consensus 75 ~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~--~~~~a~~~vr~~R---~---~~~~~~q 146 (208)
.+|+.+.+..|++.++.|+..++...|+|||.+|.+|||++++|||+..++ ++++|++++.++| . +...++|
T Consensus 84 ~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq 163 (434)
T KOG2283|consen 84 NPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQ 163 (434)
T ss_pred CCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchh
Confidence 999999999999999999999999999999999999999999999998654 5899999999999 3 2347899
Q ss_pred HHHHHHHhHhh
Q psy12442 147 IAFLEKYKPKS 157 (208)
Q Consensus 147 ~~~l~~~~~~~ 157 (208)
.+|+++|...+
T Consensus 164 ~RYv~Y~~~~l 174 (434)
T KOG2283|consen 164 RRYVGYFSRVL 174 (434)
T ss_pred hHHHHHHHHHh
Confidence 99999999853
No 16
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.79 E-value=3e-18 Score=141.52 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=103.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCC---------CCCcc----------------------cc------
Q psy12442 17 GFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEP---------TYKVE----------------------DL------ 59 (208)
Q Consensus 17 ~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~---------~~~~~----------------------~~------ 59 (208)
..+||++++|...+..++|..+++.++..||+|+.. .|-+. .+
T Consensus 92 ~~~fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~ 171 (303)
T PHA02742 92 KGRFICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKKIKSFRNYAVTNLC 171 (303)
T ss_pred CCeEEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCCeeeccccCCCCCCCceEEEEEEEEEEEEEEcCCEEEEEEE
Confidence 468999999999999999999999999999999862 11100 00
Q ss_pred ----------ccCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhhh----------CCCCcEEEEcCCCCCcHHHHHHH
Q psy12442 60 ----------KTEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFRE----------DPDTCVAVHCVAGLGRAPVMVAL 118 (208)
Q Consensus 60 ----------~~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~----------~~~~~vlVHC~~G~~RSg~~~~~ 118 (208)
....++|..| +|+..| +...+.+|+..+++.... ...+||+|||++|+||||++||.
T Consensus 172 l~~~~~~~~r~V~h~~y~~W--pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~ai 249 (303)
T PHA02742 172 LTDTNTGASLDIKHFAYEDW--PHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAI 249 (303)
T ss_pred EEECCCCceEEEEEEEECCC--CCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHH
Confidence 0011234444 465555 567888888888764211 12479999999999999999998
Q ss_pred HHHH------cCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHhHhh
Q psy12442 119 ALIE------LGLKYEDAVELIRQKRRGAIN-SKQIAFLEKYKPKS 157 (208)
Q Consensus 119 ~l~~------~~~~~~~a~~~vr~~R~~~~~-~~q~~~l~~~~~~~ 157 (208)
..+. ...+..+++..+|++|+++++ ..|+.|+++.-..+
T Consensus 250 d~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y 295 (303)
T PHA02742 250 DICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIF 295 (303)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHHHHHHHHHH
Confidence 7642 245788999999999999985 59999998654443
No 17
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.78 E-value=3.5e-18 Score=136.05 Aligned_cols=137 Identities=20% Similarity=0.335 Sum_probs=103.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC---------CCccc---------------------c-------
Q psy12442 17 GFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT---------YKVED---------------------L------- 59 (208)
Q Consensus 17 ~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~---------~~~~~---------------------~------- 59 (208)
..+||+++.|...+.+++|..+++.+++.||.|++.. |-+.. +
T Consensus 40 ~~~fI~tQ~P~~~t~~~FW~mv~~~~~~~IV~l~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~i 119 (231)
T cd00047 40 PKAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTELVEKGREKCAQYWPEEEGSLTYGDITVTLVSEEKLDDYTVRTLKL 119 (231)
T ss_pred CcceEEcCCCChhhHHHHHHHHHhcCCCEEEEccccccCCCccCccCCCCCCCCeEecCEEEEEEEEEEcCCEEEEEEEE
Confidence 6889999999999999999999999999999998621 11110 0
Q ss_pred ------ccCCeEEEE-eecCCCCCC-CHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHH------cCC
Q psy12442 60 ------KTEGINVKD-LAYEDGTSP-SPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE------LGL 125 (208)
Q Consensus 60 ------~~~g~~~~~-~p~~d~~~p-~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~------~~~ 125 (208)
....+.+++ ..|+|...| ....+.+++..++.......++||+|||.+|+||||++||++++. ..+
T Consensus 120 ~~~~~~~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~ 199 (231)
T cd00047 120 SNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVV 199 (231)
T ss_pred EECCCCCceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCC
Confidence 000112222 224565555 447788888888776322347899999999999999999998753 258
Q ss_pred CHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q psy12442 126 KYEDAVELIRQKRRGAI-NSKQIAFLEKY 153 (208)
Q Consensus 126 ~~~~a~~~vr~~R~~~~-~~~q~~~l~~~ 153 (208)
++.+++..+|++|++++ +..|+.|++..
T Consensus 200 ~~~~~v~~iR~~R~~~v~~~~Qy~f~~~~ 228 (231)
T cd00047 200 DIFQTVKELRSQRPGMVQTEEQYIFLYRA 228 (231)
T ss_pred CHHHHHHHHHhccccccCCHHHHHHHHHH
Confidence 99999999999999998 56999999875
No 18
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.78 E-value=8.2e-18 Score=139.39 Aligned_cols=139 Identities=15% Similarity=0.220 Sum_probs=102.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC----------CCcc----c------------------------
Q psy12442 17 GFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT----------YKVE----D------------------------ 58 (208)
Q Consensus 17 ~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~----------~~~~----~------------------------ 58 (208)
..+||++++|...+..++|..+++.++..||+|+... |-+. .
T Consensus 92 ~~~yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~~~~~~~~~l 171 (312)
T PHA02747 92 DKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCLNEDGNIDMEDFRIETLKTSVRAKYILTLI 171 (312)
T ss_pred CCeEEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCCcccccccCCCCCCCCeEeeeEEEEEEEEEecCCeEEEEE
Confidence 5689999999999999999999999999999998622 1100 0
Q ss_pred ----------cccCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhhh---------CCCCcEEEEcCCCCCcHHHHHHH
Q psy12442 59 ----------LKTEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFRE---------DPDTCVAVHCVAGLGRAPVMVAL 118 (208)
Q Consensus 59 ----------~~~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~---------~~~~~vlVHC~~G~~RSg~~~~~ 118 (208)
.....++|..| +|+..| +...+.+|+..++..... ...+||+|||++|+||||++||+
T Consensus 172 ~l~~~~~~~~r~V~h~~y~~W--pd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcai 249 (312)
T PHA02747 172 EITDKILKDSRKISHFQCSEW--FEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAV 249 (312)
T ss_pred EEEECCCCCceEEEEEEECCC--CCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHH
Confidence 00011233344 565555 566788888777654321 11379999999999999999998
Q ss_pred HHHH------cCCCHHHHHHHHHHhCCCCCC-HHHHHHH---HHHhHhh
Q psy12442 119 ALIE------LGLKYEDAVELIRQKRRGAIN-SKQIAFL---EKYKPKS 157 (208)
Q Consensus 119 ~l~~------~~~~~~~a~~~vr~~R~~~~~-~~q~~~l---~~~~~~~ 157 (208)
.++. ...+..+++..+|++|+++++ ..|+.|+ ++.-..+
T Consensus 250 di~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~ 298 (312)
T PHA02747 250 DICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYF 298 (312)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Confidence 8642 346889999999999999985 5999999 7654433
No 19
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.77 E-value=7.9e-18 Score=140.05 Aligned_cols=139 Identities=21% Similarity=0.263 Sum_probs=104.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC--------CCcc----------------------cc-------
Q psy12442 17 GFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT--------YKVE----------------------DL------- 59 (208)
Q Consensus 17 ~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~--------~~~~----------------------~~------- 59 (208)
..+||++++|...+..++|+.+++.++..||+|++.. |-+. .+
T Consensus 112 ~~~fIaTQ~Pl~~T~~dFW~MIwe~~v~vIVMLt~~~e~~~kc~~YWP~~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~l 191 (323)
T PHA02746 112 ANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTDIDDDDEKCFELWTKEEDSELAFGRFVAKILDIIEELSFTKTRLMI 191 (323)
T ss_pred CCeEEEeCCCChhhHHHHHHHHHhhCCCEEEEecccccCCccCCCCCCCCCCCCeEEcCEEEEEEEEEEcCCeEEEEEEE
Confidence 4789999999999999999999999999999998521 1100 00
Q ss_pred ---------ccCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhhh---------CCCCcEEEEcCCCCCcHHHHHHHHH
Q psy12442 60 ---------KTEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFRE---------DPDTCVAVHCVAGLGRAPVMVALAL 120 (208)
Q Consensus 60 ---------~~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~---------~~~~~vlVHC~~G~~RSg~~~~~~l 120 (208)
....++|..|| |++.| ....+.+++..+++.... ...+||+|||++|+||||++||..+
T Consensus 192 ~~~~~~~~r~V~h~~y~~Wp--d~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~ 269 (323)
T PHA02746 192 TDKISDTSREIHHFWFPDWP--DNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDN 269 (323)
T ss_pred EECCCCCceEEEEEEECCCC--CCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHH
Confidence 01123344454 65555 567888888888765321 1137999999999999999999876
Q ss_pred H----H--cCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHhHhh
Q psy12442 121 I----E--LGLKYEDAVELIRQKRRGAIN-SKQIAFLEKYKPKS 157 (208)
Q Consensus 121 ~----~--~~~~~~~a~~~vr~~R~~~~~-~~q~~~l~~~~~~~ 157 (208)
+ . ...+..+++..+|++|+++++ ..|+.|+++.-...
T Consensus 270 ~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~~ 313 (323)
T PHA02746 270 ALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYA 313 (323)
T ss_pred HHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHHHHHHHH
Confidence 4 2 347889999999999999985 59999999765444
No 20
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.77 E-value=8.6e-18 Score=135.99 Aligned_cols=135 Identities=20% Similarity=0.333 Sum_probs=104.1
Q ss_pred eCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC---------CCccc----------------------------
Q psy12442 16 KGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT---------YKVED---------------------------- 58 (208)
Q Consensus 16 ~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~---------~~~~~---------------------------- 58 (208)
...+||+++.|...+.+++|..+++.++..||+|++.. |-+..
T Consensus 67 ~~~~fI~tQ~P~~~t~~dFW~mv~~~~~~~IVmL~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~ 146 (258)
T smart00194 67 GPKAYIATQGPLPSTVEDFWRMVWEEKVTTIVMLTELEEKGREKCAQYWPEEEEPLTYGDITVTLKSVEKVDDYTIRTLE 146 (258)
T ss_pred CccceEEeCCCchHHHHHHHHHHHhcCCCEEEEeccceeCCEeeccccCCCCCCcceECCEEEEEEEEEecCCEEEEEEE
Confidence 46789999999999999999999999999999998721 11100
Q ss_pred ---------cccCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHH------
Q psy12442 59 ---------LKTEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE------ 122 (208)
Q Consensus 59 ---------~~~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~------ 122 (208)
.....++|..| +|+..| +...+.+++..++..... .++||+|||.+|+||||++||++++.
T Consensus 147 v~~~~~~~~~~v~~~~y~~W--~d~~~P~~~~~~~~~i~~v~~~~~~-~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~ 223 (258)
T smart00194 147 VTNTGCSETRTVTHYHYTNW--PDHGVPESPKSILDLVRAVRKSQST-STGPIVVHCSAGVGRTGTFIAIDILLQQLEAG 223 (258)
T ss_pred EEECCCCCcEEEEEEeeCCC--CCCCCCCCHHHHHHHHHHHHHhhcc-CCCCEEEEeCCCCCccchhhHHHHHHHHHHHc
Confidence 00111233344 466666 667888888888876321 26899999999999999999998752
Q ss_pred cCCCHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q psy12442 123 LGLKYEDAVELIRQKRRGAI-NSKQIAFLEKY 153 (208)
Q Consensus 123 ~~~~~~~a~~~vr~~R~~~~-~~~q~~~l~~~ 153 (208)
..++..+++..+|++|++++ +..|+.|++..
T Consensus 224 ~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~~~ 255 (258)
T smart00194 224 KEVDIFEIVKELRSQRPGMVQTEEQYIFLYRA 255 (258)
T ss_pred CCCCHHHHHHHHHhccccccCCHHHHHHHHHH
Confidence 35799999999999999998 45999999864
No 21
>PHA02738 hypothetical protein; Provisional
Probab=99.76 E-value=8.6e-18 Score=139.64 Aligned_cols=139 Identities=21% Similarity=0.269 Sum_probs=103.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC---------CCcc----------------------cc------
Q psy12442 17 GFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT---------YKVE----------------------DL------ 59 (208)
Q Consensus 17 ~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~---------~~~~----------------------~~------ 59 (208)
..+||++++|...+..++|..+++.++..||+|+... |-+. .+
T Consensus 89 ~~kfI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~~~kc~~YWp~~~~~~~~~g~f~V~~~~~~~~~~~~~~~l~ 168 (320)
T PHA02738 89 KKKFICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDVEQGSIRFGKFKITTTQVETHPHYVKSTLL 168 (320)
T ss_pred CceeEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCCeeeccccCCCCCCCceEeccEEEEEEEEEecCCeEEEEEE
Confidence 4589999999999999999999999999999998621 1110 00
Q ss_pred ---------ccCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhhh------------CCCCcEEEEcCCCCCcHHHHHH
Q psy12442 60 ---------KTEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFRE------------DPDTCVAVHCVAGLGRAPVMVA 117 (208)
Q Consensus 60 ---------~~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~------------~~~~~vlVHC~~G~~RSg~~~~ 117 (208)
....++|..| +|+..| +...+.+|+..|++.... ...+||+|||.+|+||||++||
T Consensus 169 l~~~~~~~r~V~h~~y~~W--pd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFca 246 (320)
T PHA02738 169 LTDGTSATQTVTHFNFTAW--PDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCV 246 (320)
T ss_pred EEeCCCCcEEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhH
Confidence 0011334445 465555 567888888887764320 1147999999999999999999
Q ss_pred HHHHH------cCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHhHhh
Q psy12442 118 LALIE------LGLKYEDAVELIRQKRRGAIN-SKQIAFLEKYKPKS 157 (208)
Q Consensus 118 ~~l~~------~~~~~~~a~~~vr~~R~~~~~-~~q~~~l~~~~~~~ 157 (208)
..++. ...+..+++..+|++|+++++ ..|+.|+++.-..+
T Consensus 247 idi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y 293 (320)
T PHA02738 247 VDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRY 293 (320)
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHH
Confidence 87642 346889999999999999985 59999998755444
No 22
>KOG0792|consensus
Probab=99.75 E-value=1.4e-17 Score=150.31 Aligned_cols=137 Identities=20% Similarity=0.290 Sum_probs=107.4
Q ss_pred eCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC---------CCc------------------------------
Q psy12442 16 KGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT---------YKV------------------------------ 56 (208)
Q Consensus 16 ~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~---------~~~------------------------------ 56 (208)
...++|++++|...|..++|+.+|+.|++.|++|+.+. |-+
T Consensus 936 ~e~~YIA~QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~EggR~KchqYWPr~~~~t~~ygrf~v~~~~~~~t~~y~tr~m 1015 (1144)
T KOG0792|consen 936 IENRYIACQGPLPHTCTDFWQMVWEQGSTLIVMLTTEVEGGRVKCHQYWPRLGHETMEYGRFQVTCVFEQQTTCYVTREM 1015 (1144)
T ss_pred eeEEEEEecCCCcchHHHHHHHHHhcCceEEEEEeehhhcCeeccccccCCCCccceeccceEEEEEEecccccEEEEeE
Confidence 35789999999999999999999999999999998631 111
Q ss_pred --------cccccCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHH----HH-
Q psy12442 57 --------EDLKTEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALAL----IE- 122 (208)
Q Consensus 57 --------~~~~~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l----~~- 122 (208)
+.-....++|..|| |+++| +.+.|++|++.|+.... ..+.||+|||+||+||||+++.+.+ ++
T Consensus 1016 ~l~~~~t~eeR~V~hLQYtaWP--DHg~P~D~~~FL~FleevrsvR~-~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~ 1092 (1144)
T KOG0792|consen 1016 TLKDLQTREERTVWHLQYTAWP--DHGVPDDPNDFLDFLEEVRSVRR-GTNPPILVHCSAGIGRTGVLILMETALCLLEH 1092 (1144)
T ss_pred EEeeccCCceeeeeeeeecccc--cCCCCCChHHHHHHHHHHHHHhc-cCCCCeEEEccCCCCcceehHHHHHHHHHHhc
Confidence 11112246777777 76555 67899999999988743 2366999999999999999887554 44
Q ss_pred -cCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHhH
Q psy12442 123 -LGLKYEDAVELIRQKRRGAIN-SKQIAFLEKYKP 155 (208)
Q Consensus 123 -~~~~~~~a~~~vr~~R~~~~~-~~q~~~l~~~~~ 155 (208)
..++..+.+..||.+|-.+|+ .+||.|+++.--
T Consensus 1093 Ne~vdi~divr~mR~QR~~mVQT~~QYkFVyevil 1127 (1144)
T KOG0792|consen 1093 NEPVDILDIVRTMRDQRAMMVQTLSQYKFVYEVIL 1127 (1144)
T ss_pred CCCCCHHHHHHHHHHHHhhhccchHHhhHHHHHHH
Confidence 457888999999999999995 599999997543
No 23
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.72 E-value=1.1e-16 Score=122.87 Aligned_cols=99 Identities=27% Similarity=0.384 Sum_probs=82.4
Q ss_pred cccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHH--cCCCHHHHHHHH
Q psy12442 57 EDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE--LGLKYEDAVELI 134 (208)
Q Consensus 57 ~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~--~~~~~~~a~~~v 134 (208)
......++++.++|+.|+.+|+...+.+++++|+.... .+++|+|||.+|+|||||+++||||. ..+..++++..+
T Consensus 66 ~~~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~--~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~ 143 (180)
T COG2453 66 AIEENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALS--KGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVK 143 (180)
T ss_pred ceeccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHh--cCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 44556689999999999999999999999999999854 56699999999999999999999997 367888999999
Q ss_pred HHhCCCCC-CHHHHHHHHHHhHhh
Q psy12442 135 RQKRRGAI-NSKQIAFLEKYKPKS 157 (208)
Q Consensus 135 r~~R~~~~-~~~q~~~l~~~~~~~ 157 (208)
+.+|++.+ ...|+.+..+.....
T Consensus 144 ~~~r~~~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 144 RRRRPGAVVTEIQHLFELEQELFR 167 (180)
T ss_pred HhcCCcccccHHHHHHHHHHHHHH
Confidence 99999654 456666666555443
No 24
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.72 E-value=1.9e-16 Score=135.22 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=103.7
Q ss_pred CceEEEeCCCCC--CCHHHHHHHHHhCCCcEEEEecCC---------CCCc---------------c------cccc---
Q psy12442 17 GFKFLITDRPTD--LTIPNYILELKKHQVKNVVRVCEP---------TYKV---------------E------DLKT--- 61 (208)
Q Consensus 17 ~~~~~~~~~p~~--~~~~~~~~~l~~~gi~~Vv~l~~~---------~~~~---------------~------~~~~--- 61 (208)
..++++++.|++ .++.++|..++++++..||+|+.. .|.. + .+..
T Consensus 333 k~~aIa~QYP~nt~eTieDFWrMVWEn~~~VIVMLT~l~E~g~~KC~pYW~~s~tYGdItVts~seesls~g~iIR~f~L 412 (535)
T PRK15375 333 KPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYFRGSYTFGEVHTNSQKVSSASQGEAIDQYNM 412 (535)
T ss_pred ccceEeccCCCCchhhHHHHHHHHHHcCCCEEEEeeccccCcccccCccCCCcceeccEEEEEEEEEeccCCceEEEEEE
Confidence 346999999976 789999999999999999999872 1200 0 0000
Q ss_pred -------C-Ce-EEEEeecCCCCCC-CHHHHHHHHHHHHhhhhhC-------CCCcEEEEcCCCCCcHHHHHHHHHHH--
Q psy12442 62 -------E-GI-NVKDLAYEDGTSP-SPELVDEWFEFLKSVFRED-------PDTCVAVHCVAGLGRAPVMVALALIE-- 122 (208)
Q Consensus 62 -------~-g~-~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~~-------~~~~vlVHC~~G~~RSg~~~~~~l~~-- 122 (208)
. .+ +|+...|+|+.+| ....+..+++.|+...... +..+.+|||++|+||||++||++++.
T Consensus 413 ~Ik~~E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~ 492 (535)
T PRK15375 413 QLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDN 492 (535)
T ss_pred EEecCCceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhcc
Confidence 0 01 2333346787665 4566888888887652211 11234799999999999999999987
Q ss_pred cCCCHHHHHHHHHHhCCC-CCC-HHHHHHHHHHhHhh
Q psy12442 123 LGLKYEDAVELIRQKRRG-AIN-SKQIAFLEKYKPKS 157 (208)
Q Consensus 123 ~~~~~~~a~~~vr~~R~~-~~~-~~q~~~l~~~~~~~ 157 (208)
...+.++++..+|..|++ +++ .+|+.+|++.+.++
T Consensus 493 ~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 493 PHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred ccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHHH
Confidence 346999999999999999 885 59999999998876
No 25
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.64 E-value=2.6e-15 Score=119.24 Aligned_cols=136 Identities=25% Similarity=0.414 Sum_probs=103.7
Q ss_pred eCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC---------CCc----------------c-c-----------
Q psy12442 16 KGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT---------YKV----------------E-D----------- 58 (208)
Q Consensus 16 ~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~---------~~~----------------~-~----------- 58 (208)
.+..||+++.|...+.+++|..+.+.+++.||.|+... |-+ . .
T Consensus 40 ~~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~~~~e~~~~~~~~y~P~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~ 119 (235)
T PF00102_consen 40 NGKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLCSFDESGDEKCDQYWPLKEGESLKFGDYTVKCKEKIEENSKHYTVR 119 (235)
T ss_dssp STEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEESBSEETTEESS--TSTSSSSSEEEETTEEEEEEEEEEEEESSEEEE
T ss_pred chhhheeecccccccccceehheeeccccceecccccccccccccccccccccccccccccccccccccccccccceEEe
Confidence 48899999999999999999999999999999998631 100 0 0
Q ss_pred -------------cccCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHH--
Q psy12442 59 -------------LKTEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE-- 122 (208)
Q Consensus 59 -------------~~~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~-- 122 (208)
.....++|. .|+++..| ....+.++++.+.... ....+|++|||.+|.||||++|++.++.
T Consensus 120 ~l~v~~~~~~~~~~~v~~~~~~--~W~~~~~P~~~~~~~~~~~~v~~~~-~~~~~pivVhc~~G~gRsg~f~~~~~~~~~ 196 (235)
T PF00102_consen 120 KLEVTNGKSKKKSRTVTHFHYT--NWPDDGVPPSPESFLDFIRKVNKSK-DDPNGPIVVHCSDGVGRSGTFCAIDILIEQ 196 (235)
T ss_dssp EEEEEETTTTEEEEEEEEEEEE--SSSSSSSGSSSHHHHHHHHHHHHHH-STTSSEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred eccccccccccccccccceeee--eccccccccccchhhhhhhhccccc-cCCccceEeecccccccccccccchhhccc
Confidence 000112333 44565555 5677888888887764 3467899999999999999999988752
Q ss_pred ----cCCCHHHHHHHHHHhCCCCC-CHHHHHHHHHHh
Q psy12442 123 ----LGLKYEDAVELIRQKRRGAI-NSKQIAFLEKYK 154 (208)
Q Consensus 123 ----~~~~~~~a~~~vr~~R~~~~-~~~q~~~l~~~~ 154 (208)
...+..+++..+|++|++++ +..|+.|++..-
T Consensus 197 ~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~~~ 233 (235)
T PF00102_consen 197 LKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYMAV 233 (235)
T ss_dssp HHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHhhCCCccCCHHHHHHHHHHH
Confidence 24789999999999999998 569999998753
No 26
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.62 E-value=3.2e-15 Score=117.47 Aligned_cols=140 Identities=20% Similarity=0.205 Sum_probs=96.5
Q ss_pred eeeeCceEEEeCCCCCCCHHHHHHHHHhCCC--cEEEEecCCC---------CCc-------------------------
Q psy12442 13 IEFKGFKFLITDRPTDLTIPNYILELKKHQV--KNVVRVCEPT---------YKV------------------------- 56 (208)
Q Consensus 13 ~~~~~~~~~~~~~p~~~~~~~~~~~l~~~gi--~~Vv~l~~~~---------~~~------------------------- 56 (208)
|....+.||++++|...+.+++|+.++.+.. ..||+|.... |-+
T Consensus 87 ik~~~~~yIAtQgP~~~t~ddFW~mvw~n~~~~gvIVmLt~l~E~~rekc~qYWp~~~~~~~~~G~~v~~~~~~e~~~d~ 166 (302)
T COG5599 87 IKTPRGKYIATQGPKPETIDDFWKMVWHNVPNNGVIVMLTSLPEYNREKCDQYWPLGYDDTLIIGLRVIKQKKYELFNDN 166 (302)
T ss_pred eecCCCceEEecCCCCchHHHHHHHHHhcCCCceEEEEecChHHHhHHHHhhhCCCCcCcceeeeeEEEEEecccccccc
Confidence 3334577999999999999999999999877 8999998620 100
Q ss_pred --------------cccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhC-CCCcEEEEcCCCCCcHHHHHHHHHH
Q psy12442 57 --------------EDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFRED-PDTCVAVHCVAGLGRAPVMVALALI 121 (208)
Q Consensus 57 --------------~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~-~~~~vlVHC~~G~~RSg~~~~~~l~ 121 (208)
.......++|. .|.|...|+.. ...+.++...... ..+|++|||+||+||||||+|...+
T Consensus 167 ~~~~~~f~L~~~~~~~k~Ihhf~y~--nW~D~~~p~i~---sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~l 241 (302)
T COG5599 167 IVNVHNFELTSINGPPKKIHHFQYI--NWVDFNVPDIR---SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDIL 241 (302)
T ss_pred eeeeeecccccCCCCccEEEEEEec--CccccCCcCHH---HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHH
Confidence 00011123333 34587777544 4444444443232 5799999999999999999998865
Q ss_pred H---cC---------CC---HHHHHHHHHHhCCCCCC-HHHHHHHHHHhHhh
Q psy12442 122 E---LG---------LK---YEDAVELIRQKRRGAIN-SKQIAFLEKYKPKS 157 (208)
Q Consensus 122 ~---~~---------~~---~~~a~~~vr~~R~~~~~-~~q~~~l~~~~~~~ 157 (208)
. .. ++ ..+.+..+|++|-.+++ -.|+.||++.-..+
T Consensus 242 l~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l 293 (302)
T COG5599 242 LRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLEL 293 (302)
T ss_pred HhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3 11 11 13667789999988885 59999999877665
No 27
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.61 E-value=3.5e-15 Score=103.84 Aligned_cols=88 Identities=27% Similarity=0.449 Sum_probs=68.6
Q ss_pred EEEeecCCCCCC-CHHHHHHHHHHHHhhhhhC-CCCcEEEEcCCCCCcHHHHHHHHHHHc----C---CCHHHHHHHHHH
Q psy12442 66 VKDLAYEDGTSP-SPELVDEWFEFLKSVFRED-PDTCVAVHCVAGLGRAPVMVALALIEL----G---LKYEDAVELIRQ 136 (208)
Q Consensus 66 ~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~~-~~~~vlVHC~~G~~RSg~~~~~~l~~~----~---~~~~~a~~~vr~ 136 (208)
|...+|+|...| ..+.+.+++..++...... .++||+|||.+|+||||++++++++.. + .+..+++..+|+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 444445565555 4478888888888775422 368999999999999999999998741 2 578899999999
Q ss_pred hCCCCCC-HHHHHHHHHH
Q psy12442 137 KRRGAIN-SKQIAFLEKY 153 (208)
Q Consensus 137 ~R~~~~~-~~q~~~l~~~ 153 (208)
+|+++++ ..|+.|+++.
T Consensus 85 ~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 85 QRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhCCcHHHHHHHHHH
Confidence 9999884 5899998865
No 28
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.61 E-value=3.5e-15 Score=103.84 Aligned_cols=88 Identities=27% Similarity=0.449 Sum_probs=68.6
Q ss_pred EEEeecCCCCCC-CHHHHHHHHHHHHhhhhhC-CCCcEEEEcCCCCCcHHHHHHHHHHHc----C---CCHHHHHHHHHH
Q psy12442 66 VKDLAYEDGTSP-SPELVDEWFEFLKSVFRED-PDTCVAVHCVAGLGRAPVMVALALIEL----G---LKYEDAVELIRQ 136 (208)
Q Consensus 66 ~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~~-~~~~vlVHC~~G~~RSg~~~~~~l~~~----~---~~~~~a~~~vr~ 136 (208)
|...+|+|...| ..+.+.+++..++...... .++||+|||.+|+||||++++++++.. + .+..+++..+|+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 444445565555 4478888888888775422 368999999999999999999998741 2 578899999999
Q ss_pred hCCCCCC-HHHHHHHHHH
Q psy12442 137 KRRGAIN-SKQIAFLEKY 153 (208)
Q Consensus 137 ~R~~~~~-~~q~~~l~~~ 153 (208)
+|+++++ ..|+.|+++.
T Consensus 85 ~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 85 QRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhCCcHHHHHHHHHH
Confidence 9999884 5899998865
No 29
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.61 E-value=2.7e-15 Score=113.10 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHhCCCcEEEEecCCCCCc---cccccCCeEEEEeecCCCCC----CCHHHHHHHHHHHHhhhhhCCCCcE
Q psy12442 29 LTIPNYILELKKHQVKNVVRVCEPTYKV---EDLKTEGINVKDLAYEDGTS----PSPELVDEWFEFLKSVFREDPDTCV 101 (208)
Q Consensus 29 ~~~~~~~~~l~~~gi~~Vv~l~~~~~~~---~~~~~~g~~~~~~p~~d~~~----p~~~~~~~~~~~i~~~l~~~~~~~v 101 (208)
.+.+..+.+|+++|+++||+|+.+.... ..+...|++++++++..... .+.+.+.++++.+.+- ...||
T Consensus 19 ~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~----~n~Pv 94 (164)
T PF03162_consen 19 QPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP----RNYPV 94 (164)
T ss_dssp S--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G----GG-SE
T ss_pred CCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC----CCCCE
Confidence 3446788999999999999999875432 23467899999999776543 3455666666655432 46899
Q ss_pred EEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhHhh
Q psy12442 102 AVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQKRRGAINSKQIAFLEKYKPKS 157 (208)
Q Consensus 102 lVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~vr~~R~~~~~~~q~~~l~~~~~~~ 157 (208)
||||..|..|||+++++|....||+...|++.++.--.........+|+..|...+
T Consensus 95 LiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~f~~~~~~~~~~~fIe~f~~~~ 150 (164)
T PF03162_consen 95 LIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRRFAGPKIRYLDEQFIELFDVEL 150 (164)
T ss_dssp EEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHGGG--HHHHHHHHT-----
T ss_pred EEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHHhcCCCCcHHHHHHHHhcCcce
Confidence 99999999999999999996699999999999887433334556778888887665
No 30
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.57 E-value=6.8e-14 Score=102.42 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHhCCCcEEEEecCCCCC---cc------ccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCC
Q psy12442 28 DLTIPNYILELKKHQVKNVVRVCEPTYK---VE------DLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPD 98 (208)
Q Consensus 28 ~~~~~~~~~~l~~~gi~~Vv~l~~~~~~---~~------~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~ 98 (208)
+...+++++.|+++||++|||++..... +. .....|+.|+++|+.... ++.+.+..|.+.++. ..
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-~~~~~v~~f~~~~~~-----~~ 86 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-ITPDDVETFRAAIGA-----AE 86 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-CCHHHHHHHHHHHHh-----CC
Confidence 3455678899999999999999974211 11 123469999999977654 456667777776653 36
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHhCC
Q psy12442 99 TCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQKRR 139 (208)
Q Consensus 99 ~~vlVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~vr~~R~ 139 (208)
+|||+||.+|. ||+.+.+.++...|++.+++++..+..-.
T Consensus 87 ~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~~~~G~ 126 (135)
T TIGR01244 87 GPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRAQAAGY 126 (135)
T ss_pred CCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 89999999999 99999988887799999999999877653
No 31
>KOG0793|consensus
Probab=99.54 E-value=2.7e-14 Score=124.56 Aligned_cols=133 Identities=18% Similarity=0.321 Sum_probs=101.6
Q ss_pred eCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC---------CCc------------------------------
Q psy12442 16 KGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT---------YKV------------------------------ 56 (208)
Q Consensus 16 ~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~---------~~~------------------------------ 56 (208)
+.--+|++++|...+++++|+.+|+.|+..||+|+... |-+
T Consensus 801 R~paYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Engv~qc~rYWPdeGselyhiyEV~LVSEHIWceDfLVRSFY 880 (1004)
T KOG0793|consen 801 RNPAYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENGVRQCYRYWPDEGSELYHIYEVNLVSEHIWCEDFLVRSFY 880 (1004)
T ss_pred CccceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcchhhhhhcCCCCCcceeeeEEeeeehhhhhhhhHHHHHHH
Confidence 34568899999999999999999999999999999731 100
Q ss_pred -------cccccCCeEEEEeecCC-CCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHH----cC
Q psy12442 57 -------EDLKTEGINVKDLAYED-GTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE----LG 124 (208)
Q Consensus 57 -------~~~~~~g~~~~~~p~~d-~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~----~~ 124 (208)
+.-+...|.|+.| ++ +.+.+...+++|..-|++.++.. .-||+|||++|.||||+.|+..++. .|
T Consensus 881 LKNlqtseTRTvTQFHfLSW--p~egvPasarslLdFRRKVNK~YRGR-ScpIiVH~sdGaGRTG~YiliDmvl~Rm~kG 957 (1004)
T KOG0793|consen 881 LKNLQTSETRTVTQFHFLSW--PDEGVPASARSLLDFRRKVNKCYRGR-SCPIIVHCSDGAGRTGTYILIDMVLNRMAKG 957 (1004)
T ss_pred Hhhcccccceeeeeeeeecc--cccCCccchHHHHHHHHHhhhhccCC-CCceEEEccCCCCccceeeeHHHHHHHHhcc
Confidence 1111113444555 46 44557789999999999998653 6799999999999999998877642 33
Q ss_pred ---CCHHHHHHHHHHhCCCCCCH-HHHHHHH
Q psy12442 125 ---LKYEDAVELIRQKRRGAINS-KQIAFLE 151 (208)
Q Consensus 125 ---~~~~~a~~~vr~~R~~~~~~-~q~~~l~ 151 (208)
++.-..++++|.+|++++.+ .|.+|+.
T Consensus 958 akeIDIaATlEHlRDQR~GmVaTkdQFef~l 988 (1004)
T KOG0793|consen 958 AKEIDIAATLEHLRDQRPGMVATKDQFEFAL 988 (1004)
T ss_pred chhhhHHHHHHHHhhcCCcceeehhhhHHHH
Confidence 46667789999999999954 7878776
No 32
>KOG0791|consensus
Probab=99.54 E-value=1e-13 Score=113.61 Aligned_cols=140 Identities=20% Similarity=0.251 Sum_probs=103.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC---------CCc------------------c---cc-------
Q psy12442 17 GFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT---------YKV------------------E---DL------- 59 (208)
Q Consensus 17 ~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~---------~~~------------------~---~~------- 59 (208)
..-|+++++|...+.+++|+.+++..+..||.|+... |-+ . .|
T Consensus 164 ~~~fIAtQGPlp~t~~~fW~mvwq~~~~~IVmlt~~~e~~R~kc~~ywP~~~~~~~~gdi~V~~v~e~~~~~w~ir~~~l 243 (374)
T KOG0791|consen 164 PREFIATQGPLPETRDDFWKMVWQQKSHIIVMLTKCNEKGRVKCDEYWPDEEVPVAYGDITVTMVSEESLDEWTIREFRL 243 (374)
T ss_pred cceEEEeeCCCCCChhHHHHHHHHhhcceEEEEeecccccchhhhhhcccccccceeccEEEEEechhhcCCceEEEEee
Confidence 4568999999999999999999999999999997521 000 0 00
Q ss_pred c-----cCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHc------CCCH
Q psy12442 60 K-----TEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIEL------GLKY 127 (208)
Q Consensus 60 ~-----~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~------~~~~ 127 (208)
. ..-.+++..-|+|+++| +...+.+|+..+.+.+.. ..+|++|||.+|+|||||++|...+.+ -.+.
T Consensus 244 ~~~~~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~-~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi 322 (374)
T KOG0791|consen 244 NYAGESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDT-SKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDI 322 (374)
T ss_pred ecccccceeEEEEEeeccccCCCCCchhHHHHHHHHHhhccc-CCCceeEEeecccccccchHhHHHHHHHhcccccccH
Confidence 0 00013333445588877 456788888888887654 478999999999999999999886542 2355
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHhHhh
Q psy12442 128 EDAVELIRQKRRGAINS-KQIAFLEKYKPKS 157 (208)
Q Consensus 128 ~~a~~~vr~~R~~~~~~-~q~~~l~~~~~~~ 157 (208)
..++..+|+.|+.++++ .||-||++.-...
T Consensus 323 ~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~ 353 (374)
T KOG0791|consen 323 FGVVLELRSARMLMVQTEDQYVFLHQCVLES 353 (374)
T ss_pred HHHHHHhhhccccccchHHHHHHHHHHHHHH
Confidence 67788889999999865 9999999766555
No 33
>KOG0790|consensus
Probab=99.48 E-value=8e-14 Score=116.43 Aligned_cols=137 Identities=18% Similarity=0.334 Sum_probs=95.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC---------CCc--------------------------c-------
Q psy12442 20 FLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT---------YKV--------------------------E------- 57 (208)
Q Consensus 20 ~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~---------~~~--------------------------~------- 57 (208)
+|++++=...++.++|..+++.+-..||+-..+. |-+ .
T Consensus 326 yIAtQGCL~nTVnDFW~MvwQENsrVIVMtTkE~ERgK~KC~~YWPee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~ 405 (600)
T KOG0790|consen 326 YIATQGCLQNTVNDFWRMVWQENSRVIVMTTKEVERGKSKCVKYWPEEGALEEYGVMRVRNVKESDTHDYTLRELKVSKL 405 (600)
T ss_pred eeehhhHHHHHHHHHHHHHHhccceEEEEehhhhhcccccccccCCcccchhhcCceEEEeccccccccceehheeeccc
Confidence 5666655557888999999998888888776420 100 0
Q ss_pred ---ccccCCeEEEEeecCCCCCC-CHHHHHHHHHHHHhhhh-hCCCCcEEEEcCCCCCcHHHHHHHHHH----H-cC---
Q psy12442 58 ---DLKTEGINVKDLAYEDGTSP-SPELVDEWFEFLKSVFR-EDPDTCVAVHCVAGLGRAPVMVALALI----E-LG--- 124 (208)
Q Consensus 58 ---~~~~~g~~~~~~p~~d~~~p-~~~~~~~~~~~i~~~l~-~~~~~~vlVHC~~G~~RSg~~~~~~l~----~-~~--- 124 (208)
.....-.+|+.+-|+||++| ++..++.|++.|+.-.. ...-+||+|||+||+|||||++...++ . .|
T Consensus 406 ~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc 485 (600)
T KOG0790|consen 406 GNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDC 485 (600)
T ss_pred cCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCC
Confidence 00111135555666698777 45689999999876532 123479999999999999998876543 2 44
Q ss_pred -CCHHHHHHHHHHhCCCCCCH-HHHHHHHHHhHh
Q psy12442 125 -LKYEDAVELIRQKRRGAINS-KQIAFLEKYKPK 156 (208)
Q Consensus 125 -~~~~~a~~~vr~~R~~~~~~-~q~~~l~~~~~~ 156 (208)
++....++.||++|.+++++ .||+|++.--+.
T Consensus 486 ~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Avqh 519 (600)
T KOG0790|consen 486 DIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVQH 519 (600)
T ss_pred cccHHHHHHHHHHHhcchhhhHHhHHHHHHHHHH
Confidence 46778899999999999976 999999854333
No 34
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.43 E-value=8.2e-13 Score=99.88 Aligned_cols=118 Identities=22% Similarity=0.380 Sum_probs=62.9
Q ss_pred eeCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCCCC--ccccccCCeEEEEeecCCCCCCCHHHHH---------
Q psy12442 15 FKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYK--VEDLKTEGINVKDLAYEDGTSPSPELVD--------- 83 (208)
Q Consensus 15 ~~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~--~~~~~~~g~~~~~~p~~d~~~p~~~~~~--------- 83 (208)
.++++++.+..|+..+ +++++.|.++||++||+|+.+..- .......|++++++|+.+........+.
T Consensus 16 ir~g~lyRS~~l~~lt-~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLT-EADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADA 94 (164)
T ss_dssp S-TTSEEEES--TT---HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHH
T ss_pred ecCCcEEecCCcCcCC-HHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccch
Confidence 5678899999998877 557788899999999999984210 1112234899999998775443111111
Q ss_pred --HHHHH-----------HHhh---hhhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Q psy12442 84 --EWFEF-----------LKSV---FREDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELI 134 (208)
Q Consensus 84 --~~~~~-----------i~~~---l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~v 134 (208)
.+... +.++ +...+ +|+||||.+|+.|||.++|..|...|.+.+++++.+
T Consensus 95 ~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~~~I~~DY 160 (164)
T PF13350_consen 95 PRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPDEDIIADY 160 (164)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCHHHHHHHH
Confidence 11111 1111 11233 799999999999999999998888999999887654
No 35
>KOG4228|consensus
Probab=99.43 E-value=9.2e-13 Score=120.57 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=107.7
Q ss_pred eCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC-------CC---------------------------------
Q psy12442 16 KGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT-------YK--------------------------------- 55 (208)
Q Consensus 16 ~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~-------~~--------------------------------- 55 (208)
...-|++++.|...++.++|+.++++++++||+|++.. |-
T Consensus 893 ~~~~fivtq~PL~~T~~DFWrmi~d~~~tsiVmL~~l~~~~~C~qyw~~~g~~~yg~i~Ve~~~~~~~~~~t~r~f~i~n 972 (1087)
T KOG4228|consen 893 QPKAFIVTQGPLAETVEDFWRMIWDQNVTSIVMLTELKHPEKCPQYWPPEGSQRYGPIEVEDMNEHINPQYTAREFGVTN 972 (1087)
T ss_pred CcceEEEecCCcccchHHHHHHhhccceeEEEEecccCcccccccccCCcCceecCcEEEEecccccchhhhhhhheeee
Confidence 46779999999999999999999999999999998731 00
Q ss_pred ---ccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHH------cCCC
Q psy12442 56 ---VEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE------LGLK 126 (208)
Q Consensus 56 ---~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~------~~~~ 126 (208)
........++|..||..+..+.....+.........+.+....+|+.|||.+|.||||++||+-++. .-++
T Consensus 973 ~~~~~~r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vD 1052 (1087)
T KOG4228|consen 973 EREKQSRTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVD 1052 (1087)
T ss_pred ccccCceEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCcee
Confidence 0001112357778886654444455666666666666555558999999999999999999977642 2367
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHhHh
Q psy12442 127 YEDAVELIRQKRRGAINS-KQIAFLEKYKPK 156 (208)
Q Consensus 127 ~~~a~~~vr~~R~~~~~~-~q~~~l~~~~~~ 156 (208)
..++++.+|..||+++++ .||+|+++-..+
T Consensus 1053 Vfq~vk~Lr~~rp~mv~t~~QY~fcYdv~~~ 1083 (1087)
T KOG4228|consen 1053 VFQTVKTLRFQRPGMVDTSDQYQFCYDVALE 1083 (1087)
T ss_pred eehhhhhhhhcCccccCcHHHHHHHHHHHHH
Confidence 889999999999999976 999999976544
No 36
>KOG4228|consensus
Probab=99.34 E-value=3.2e-12 Score=117.11 Aligned_cols=140 Identities=19% Similarity=0.278 Sum_probs=101.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCC---------CCCc-------------------------------
Q psy12442 17 GFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEP---------TYKV------------------------------- 56 (208)
Q Consensus 17 ~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~---------~~~~------------------------------- 56 (208)
...||++++|..++..++|+.+++.+-..||++... .|-+
T Consensus 607 ~n~yIaaQgP~~eTv~DFWRMVWEq~S~~IVMvTnl~E~~r~kC~qYWP~~t~~yGdi~V~~~~~~~~a~y~iRtf~l~~ 686 (1087)
T KOG4228|consen 607 PNAYIAAQGPRPETVGDFWRMVWEQKSAGIVMVTNLEEFSRVKCAQYWPEGTETYGDIKVTLVQTKPLAEYGIRTFALKK 686 (1087)
T ss_pred cccceeccCCcccchHHHHHHheeccCCcEEEEecccccccccccccCCCCccccccccccceeeeeeccceEEeeeccc
Confidence 467999999999999999999999999999988752 1111
Q ss_pred --cccccCCeEEEEeecCCCCCCC-HHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHH----H--cCCCH
Q psy12442 57 --EDLKTEGINVKDLAYEDGTSPS-PELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALI----E--LGLKY 127 (208)
Q Consensus 57 --~~~~~~g~~~~~~p~~d~~~p~-~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~----~--~~~~~ 127 (208)
+.....--+++...|+|+..|. ...++.|+..++.+. ....||++|||+||+||||++++..-| + ...+.
T Consensus 687 ~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~-p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdi 765 (1087)
T KOG4228|consen 687 QGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFN-PPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDI 765 (1087)
T ss_pred cCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCC-CcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccce
Confidence 0000000133333466877764 467788888877762 223599999999999999998875543 2 34567
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHhHhh
Q psy12442 128 EDAVELIRQKRRGAINS-KQIAFLEKYKPKS 157 (208)
Q Consensus 128 ~~a~~~vr~~R~~~~~~-~q~~~l~~~~~~~ 157 (208)
-..+..+|.+|..++++ +||-|+++-..+.
T Consensus 766 y~~v~~lR~QR~~mVQt~eQYiFi~~AllE~ 796 (1087)
T KOG4228|consen 766 YGHVKTLRRQRNNMVQTEEQYIFIHEALLEA 796 (1087)
T ss_pred echhHHHHhccccccccHHHHHHHHHHHHHH
Confidence 78889999999999975 9999999765544
No 37
>PLN02727 NAD kinase
Probab=99.34 E-value=9.9e-12 Score=112.86 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHhCCCcEEEEecCCCCC--------ccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCC
Q psy12442 28 DLTIPNYILELKKHQVKNVVRVCEPTYK--------VEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDT 99 (208)
Q Consensus 28 ~~~~~~~~~~l~~~gi~~Vv~l~~~~~~--------~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~ 99 (208)
+....++++++.++|+++|||++++..+ .+.....|++|+++|+.+...|+.+.+.+|.+.+++- ...
T Consensus 267 gQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~s----lpk 342 (986)
T PLN02727 267 GQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDS----SKK 342 (986)
T ss_pred CCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhh----cCC
Confidence 3556678899999999999999985432 1233457999999999888889999999999998442 378
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHH
Q psy12442 100 CVAVHCVAGLGRAPVMVALALIE 122 (208)
Q Consensus 100 ~vlVHC~~G~~RSg~~~~~~l~~ 122 (208)
|||+||.+|.+|+|+++|+|+..
T Consensus 343 PVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 343 PIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred CEEEECCCCCchHHHHHHHHHHH
Confidence 99999999999999999999976
No 38
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.33 E-value=1.7e-11 Score=86.26 Aligned_cols=85 Identities=22% Similarity=0.337 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHhCCCcEEEEecCCCCC---------ccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCC
Q psy12442 28 DLTIPNYILELKKHQVKNVVRVCEPTYK---------VEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPD 98 (208)
Q Consensus 28 ~~~~~~~~~~l~~~gi~~Vv~l~~~~~~---------~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~ 98 (208)
+....++++.|++.|+++|||++..... .+.....|+.|+++|+... .++.+.+..|.+.+++. .
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~~-----~ 86 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG-AITEEDVEAFADALESL-----P 86 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT-T--HHHHHHHHHHHHTT-----T
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC-CCCHHHHHHHHHHHHhC-----C
Confidence 3556789999999999999999975322 1345678999999997764 46778888888887764 5
Q ss_pred CcEEEEcCCCCCcHHHHHHHH
Q psy12442 99 TCVAVHCVAGLGRAPVMVALA 119 (208)
Q Consensus 99 ~~vlVHC~~G~~RSg~~~~~~ 119 (208)
+|||+||..|. |++++.++.
T Consensus 87 ~Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 87 KPVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp TSEEEE-SCSH-HHHHHHHHH
T ss_pred CCEEEECCCCh-hHHHHHHHH
Confidence 79999999995 988776653
No 39
>KOG0789|consensus
Probab=99.23 E-value=2.4e-10 Score=98.38 Aligned_cols=139 Identities=21% Similarity=0.280 Sum_probs=93.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCC---------CCcc------cccc---------------------
Q psy12442 18 FKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPT---------YKVE------DLKT--------------------- 61 (208)
Q Consensus 18 ~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~---------~~~~------~~~~--------------------- 61 (208)
..||+++.|...+.+++|..+.+.++..||.|+... |.+. .+..
T Consensus 167 ~~~I~tQ~Pl~~t~~dFW~mv~~~k~~~Ivml~~~~E~~~~kc~~Y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (415)
T KOG0789|consen 167 RTAILTQAPLSKTTEDFWRMVFEEKVESVVLLCSDEELGAAECASYFPSKRGVKLTFLEFGKKFVENRKVEMKQQDQTST 246 (415)
T ss_pred cCceecCCCCcccHHHHHHHHHHcCCCEEEEecchhhccHHHHhhcCcccCCCeeeecccceeEEEeeeeecccccccce
Confidence 579999999777778999999999999999999621 1000 0000
Q ss_pred ---------C---C----eEEEEeecCCCCCCC-HHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHH--H
Q psy12442 62 ---------E---G----INVKDLAYEDGTSPS-PELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALI--E 122 (208)
Q Consensus 62 ---------~---g----~~~~~~p~~d~~~p~-~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~--~ 122 (208)
. . ..|+...|+|+.+|. ...+..++.. .........+|++|||.+|+||||++++...+ .
T Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~~~~WPd~~~p~~~~~~l~~~~~-~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~ 325 (415)
T KOG0789|consen 247 VGLLLLVLPEGLEISSSVVHYHYINWPDHGAPDSVKSILPLLRQ-SVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIE 325 (415)
T ss_pred eeEEEeecCCCccccceEEEEeeCCCccccCCcchHHHHHHHHh-hhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 0 0 233333455665554 4444544443 11111334689999999999999999986632 1
Q ss_pred --c---CCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHhHhh
Q psy12442 123 --L---GLKYEDAVELIRQKRRGAIN-SKQIAFLEKYKPKS 157 (208)
Q Consensus 123 --~---~~~~~~a~~~vr~~R~~~~~-~~q~~~l~~~~~~~ 157 (208)
. ..+..+.+..+|.+|+++++ ..|+.|++.....+
T Consensus 326 ~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~~~ 366 (415)
T KOG0789|consen 326 LQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYAATLKY 366 (415)
T ss_pred HhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Confidence 2 23477888899999999995 48988988766654
No 40
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=4.9e-09 Score=73.21 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=79.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCCCC---------ccccccCCeEEEEeecCCCCCCCHHHHHHHHH
Q psy12442 17 GFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYK---------VEDLKTEGINVKDLAYEDGTSPSPELVDEWFE 87 (208)
Q Consensus 17 ~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~---------~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~ 87 (208)
+.++-++. ....+|++.++.+|.++|||.++...+ .......|+.|.++|+... ..+.+.+..|.+
T Consensus 7 ~d~lsVsg----Qi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~-~iT~~dV~~f~~ 81 (130)
T COG3453 7 NDRLSVSG----QISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG-GITEADVEAFQR 81 (130)
T ss_pred ccceeecC----CCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC-CCCHHHHHHHHH
Confidence 34454444 444578899999999999999874322 1345677999999996653 356778999998
Q ss_pred HHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Q psy12442 88 FLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELIR 135 (208)
Q Consensus 88 ~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~vr 135 (208)
.+++. ++|||.||+.| .||-++-..-....||+.+++..+=+
T Consensus 82 Al~ea-----egPVlayCrsG-tRs~~ly~~~~~~~gm~~de~~a~g~ 123 (130)
T COG3453 82 ALDEA-----EGPVLAYCRSG-TRSLNLYGLGELDGGMSRDEIEALGQ 123 (130)
T ss_pred HHHHh-----CCCEEeeecCC-chHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88876 79999999999 77755544444447999988876543
No 41
>KOG2386|consensus
Probab=99.02 E-value=1.9e-09 Score=90.45 Aligned_cols=143 Identities=20% Similarity=0.313 Sum_probs=113.8
Q ss_pred eeCceEEEeCCCCCC-------------CHHHHHHHHHhC--CCcEEEEecC--CCCCccccccCCeEEEEeecCCCC-C
Q psy12442 15 FKGFKFLITDRPTDL-------------TIPNYILELKKH--QVKNVVRVCE--PTYKVEDLKTEGINVKDLAYEDGT-S 76 (208)
Q Consensus 15 ~~~~~~~~~~~p~~~-------------~~~~~~~~l~~~--gi~~Vv~l~~--~~~~~~~~~~~g~~~~~~p~~d~~-~ 76 (208)
....||+....|.+. ...+.+..|+.+ .|.-+|+|.. ..|+.+.+...|+.|+.+....+. .
T Consensus 21 ~~~~rfi~~K~pL~~~~~~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~v 100 (393)
T KOG2386|consen 21 IDDTRFIPFKTPLNSSYSTKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVV 100 (393)
T ss_pred cccceEEEEecccCCCCCcCCCCCccccCHHHHHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccC
Confidence 445778888887542 334555666554 6778889887 346678888899999999877744 7
Q ss_pred CCHHHHHHHHHHHHhhhh--hCCCCcEEEEcCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q psy12442 77 PSPELVDEWFEFLKSVFR--EDPDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGAIN-SKQIAFLEK 152 (208)
Q Consensus 77 p~~~~~~~~~~~i~~~l~--~~~~~~vlVHC~~G~~RSg~~~~~~l~~-~~~~~~~a~~~vr~~R~~~~~-~~q~~~l~~ 152 (208)
|....+..|+..++.+.. ..++.-|+|||.+|+.|||.++++||+. .+|+..+|++.+...|+..+. ...+.-|+.
T Consensus 101 p~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~ 180 (393)
T KOG2386|consen 101 PRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYS 180 (393)
T ss_pred CCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhh
Confidence 888899999999988876 5678899999999999999999999997 789999999999999988875 466777776
Q ss_pred HhHhh
Q psy12442 153 YKPKS 157 (208)
Q Consensus 153 ~~~~~ 157 (208)
.....
T Consensus 181 ~~~~~ 185 (393)
T KOG2386|consen 181 RYHDI 185 (393)
T ss_pred ccccc
Confidence 65544
No 42
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=99.01 E-value=4.7e-10 Score=83.45 Aligned_cols=63 Identities=29% Similarity=0.538 Sum_probs=47.8
Q ss_pred ccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHH
Q psy12442 56 VEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALI 121 (208)
Q Consensus 56 ~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~ 121 (208)
.......|+.|+++|+.|+..|..+.+++|+.++... .++..+.+||.+|.|||.++.++|.|
T Consensus 85 ~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~---p~~~~l~fhC~~G~GRTTt~Mv~~~l 147 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSL---PKDTWLHFHCQAGRGRTTTFMVMYDL 147 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS----TT-EEEEE-SSSSHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445677999999999999999999999999999886 35789999999999999988887754
No 43
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.98 E-value=6.9e-09 Score=75.53 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=80.3
Q ss_pred CHHHHHHHHHhCCCcEEEEecCC-CCCcc---c-cc-cCCeEEEEeecCC--CCCCCHHHHHHHHHHHHhhhhhCCCCcE
Q psy12442 30 TIPNYILELKKHQVKNVVRVCEP-TYKVE---D-LK-TEGINVKDLAYED--GTSPSPELVDEWFEFLKSVFREDPDTCV 101 (208)
Q Consensus 30 ~~~~~~~~l~~~gi~~Vv~l~~~-~~~~~---~-~~-~~g~~~~~~p~~d--~~~p~~~~~~~~~~~i~~~l~~~~~~~v 101 (208)
++....+...++|-+++|++... .+... . .+ ...+.+-++..+| ...|...++...++|+++| +...|+
T Consensus 20 Pl~~~ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~w---p~~apl 96 (172)
T COG5350 20 PLSVIAETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEW---PRFAPL 96 (172)
T ss_pred hHHHHHHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcC---ccccce
Confidence 36667777789999999999873 11110 0 00 0123333444344 3578889999999999997 346899
Q ss_pred EEEcCCCCCcHHH--HHHHHHHHcCCCHHHHHHHHHHhCCCC-CCH
Q psy12442 102 AVHCVAGLGRAPV--MVALALIELGLKYEDAVELIRQKRRGA-INS 144 (208)
Q Consensus 102 lVHC~~G~~RSg~--~~~~~l~~~~~~~~~a~~~vr~~R~~~-~~~ 144 (208)
||||++|+|||.. +++++.+...++..++.+.++..+|.+ +|+
T Consensus 97 lIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~ 142 (172)
T COG5350 97 LIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNP 142 (172)
T ss_pred eeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCCh
Confidence 9999999999974 344444567899999999999999998 565
No 44
>KOG1572|consensus
Probab=98.98 E-value=1.3e-08 Score=79.30 Aligned_cols=143 Identities=15% Similarity=0.221 Sum_probs=94.3
Q ss_pred eeeeeeCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCCCCcc---ccccCCeEEEEeecCCCC----CCCHHHHH
Q psy12442 11 AEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVE---DLKTEGINVKDLAYEDGT----SPSPELVD 83 (208)
Q Consensus 11 ~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~---~~~~~g~~~~~~p~~d~~----~p~~~~~~ 83 (208)
+..+....-++.+.+|.. .++.+|+.++.++||.|+.+.|..+ .+...+++++++-++... .|......
T Consensus 58 lnFs~V~~~lyRSg~P~~----~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~ 133 (249)
T KOG1572|consen 58 LNFSMVDNGLYRSGFPRP----ENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPD 133 (249)
T ss_pred ccccccccceeecCCCCc----cchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChH
Confidence 333434344555555554 4678899999999999999876543 456778999999877644 33322222
Q ss_pred HHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhHhh
Q psy12442 84 EWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQKRRGAINSKQIAFLEKYKPKS 157 (208)
Q Consensus 84 ~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~vr~~R~~~~~~~q~~~l~~~~~~~ 157 (208)
+.+....+.+-...+.|+||||..|..|||+++++.....+|+....++..+..-...-..-.++|+..|....
T Consensus 134 ~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa~sk~r~~d~~Fie~fd~~~ 207 (249)
T KOG1572|consen 134 HSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFAGSKGRRVDLRFIEMFDTNP 207 (249)
T ss_pred HHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhccchhHHHHHHHHHHhcccc
Confidence 22222222222446899999999999999999999884488998888876655432222234456676666554
No 45
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.42 E-value=6e-07 Score=72.31 Aligned_cols=45 Identities=27% Similarity=0.374 Sum_probs=35.4
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCCCHHHH-HHHHHHhCCCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGLKYEDA-VELIRQKRRGA 141 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~~~~a-~~~vr~~R~~~ 141 (208)
+++|||+||.+|..|||.++|+|+...+++.+++ -+++..-+++.
T Consensus 135 e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~ 180 (249)
T COG2365 135 ENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGE 180 (249)
T ss_pred ccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccc
Confidence 3599999999999999999999999877766644 45555555554
No 46
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.04 E-value=0.0017 Score=47.58 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=46.2
Q ss_pred eEEEEeecCCCCCCCHHHHHHHHHHHHhhhhh-CCCCcEEEEcCCCCCc----HHHHHHHHHHH-cCCCHHHHHHHHHHh
Q psy12442 64 INVKDLAYEDGTSPSPELVDEWFEFLKSVFRE-DPDTCVAVHCVAGLGR----APVMVALALIE-LGLKYEDAVELIRQK 137 (208)
Q Consensus 64 ~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~-~~~~~vlVHC~~G~~R----Sg~~~~~~l~~-~~~~~~~a~~~vr~~ 137 (208)
+.|..+- .|.+|.....+-+|+..+++.++. ...+..+|||.+.-.+ ++.++++|+|. .+|++++|++-+.+.
T Consensus 32 l~Y~~F~-~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~ 110 (141)
T PF14671_consen 32 LVYENFY-ADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASI 110 (141)
T ss_dssp S----SS-S------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTT
T ss_pred EEEeccc-CcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc
Confidence 3444443 788888999999999999999874 2347889999876555 56788899886 899999999998776
Q ss_pred C
Q psy12442 138 R 138 (208)
Q Consensus 138 R 138 (208)
-
T Consensus 111 ~ 111 (141)
T PF14671_consen 111 Q 111 (141)
T ss_dssp T
T ss_pred C
Confidence 3
No 47
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=96.71 E-value=0.056 Score=47.23 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=60.3
Q ss_pred HhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCCC---CHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHH
Q psy12442 39 KKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP---SPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVM 115 (208)
Q Consensus 39 ~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~p---~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~ 115 (208)
.......||++.+........ .....++++|+..+-.. ....+.+++.++...+...++.+|+|+|..|..-|+.+
T Consensus 315 ~~~~~~~vI~~s~~~~~~~~~-~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgV 393 (451)
T PF04179_consen 315 LESEFDCVINCSESPTPKESW-PKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGV 393 (451)
T ss_pred cCCCcCEEEEcCCCccccccc-CCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHH
Confidence 456788899998765432222 33568999998775443 24566777777777766556889999999999999988
Q ss_pred HHHHHHH
Q psy12442 116 VALALIE 122 (208)
Q Consensus 116 ~~~~l~~ 122 (208)
+.+.|+.
T Consensus 394 aLaILc~ 400 (451)
T PF04179_consen 394 ALAILCK 400 (451)
T ss_pred HHHHHHH
Confidence 8888875
No 48
>KOG4471|consensus
Probab=95.79 E-value=0.018 Score=51.00 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=20.8
Q ss_pred hCCCCcEEEEcCCCCCcHHHHHHHH
Q psy12442 95 EDPDTCVAVHCVAGLGRAPVMVALA 119 (208)
Q Consensus 95 ~~~~~~vlVHC~~G~~RSg~~~~~~ 119 (208)
+..+.+|||||+.|-.||+.+++..
T Consensus 371 e~~~~sVlVHCSDGWDRT~QlvsLA 395 (717)
T KOG4471|consen 371 ESESRSVLVHCSDGWDRTAQLVSLA 395 (717)
T ss_pred hcCCceEEEEcCCCccchHHHHHHH
Confidence 4567899999999999999777643
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=95.28 E-value=0.16 Score=34.65 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=20.2
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
.++.+|+|+|..| .||... +.+|...|++
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYLKERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHHHHhCCc
Confidence 4567999999988 788653 4455556653
No 50
>PLN02160 thiosulfate sulfurtransferase
Probab=94.26 E-value=0.27 Score=35.79 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=19.6
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
.++.+|+|+|..| .||... +..|...|++
T Consensus 79 ~~~~~IivyC~sG-~RS~~A-a~~L~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKA-TTELVAAGYK 107 (136)
T ss_pred CCCCcEEEECCCc-HHHHHH-HHHHHHcCCC
Confidence 3567999999998 788654 4444445653
No 51
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=92.99 E-value=1 Score=30.43 Aligned_cols=28 Identities=36% Similarity=0.447 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
++.+|+|+|..| .||.. ++..|...|++
T Consensus 60 ~~~~ivv~C~~G-~rs~~-aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKE-GSSQF-VAELLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCC-CcHHH-HHHHHHHcCce
Confidence 567999999998 57754 44455456653
No 52
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=92.26 E-value=0.74 Score=31.40 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=42.7
Q ss_pred HHHHHHhCCCcEEEEecCC-CCCccccccCCeE-EEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCc
Q psy12442 34 YILELKKHQVKNVVRVCEP-TYKVEDLKTEGIN-VKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGR 111 (208)
Q Consensus 34 ~~~~l~~~gi~~Vv~l~~~-~~~~~~~~~~g~~-~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~R 111 (208)
....+...+-..||++++. .|..... .. ..++|+.+.... ..... .+.+.+++|+|.+| .|
T Consensus 11 ~~~~~~~~~~~~liDvR~~~e~~~~~i----~~~~~~ip~~~~~~~--------~~~~~----~~~~~~ivv~C~~G-~r 73 (110)
T COG0607 11 EAALLLAGEDAVLLDVREPEEYERGHI----PGAAINIPLSELKAA--------ENLLE----LPDDDPIVVYCASG-VR 73 (110)
T ss_pred HHHHhhccCCCEEEeccChhHhhhcCC----Ccceeeeecccchhh--------hcccc----cCCCCeEEEEeCCC-CC
Confidence 3455566677889999885 1211111 12 556664442110 00000 23578999999999 67
Q ss_pred HHHHHHHHHHHcCCCH
Q psy12442 112 APVMVALALIELGLKY 127 (208)
Q Consensus 112 Sg~~~~~~l~~~~~~~ 127 (208)
|+. ++.+|...|++.
T Consensus 74 S~~-aa~~L~~~G~~~ 88 (110)
T COG0607 74 SAA-AAAALKLAGFTN 88 (110)
T ss_pred hHH-HHHHHHHcCCcc
Confidence 744 666666666543
No 53
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=92.00 E-value=1.1 Score=37.52 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 80 ELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
..+.++...+.+.+...++.+|+|+|.+| .||.. ++.+|...|++
T Consensus 153 ~~~~~~~~~l~~~~~~~kdk~IvvyC~~G-~Rs~~-aa~~L~~~Gf~ 197 (314)
T PRK00142 153 ETFREFPPWVEENLDPLKDKKVVMYCTGG-IRCEK-ASAWMKHEGFK 197 (314)
T ss_pred HHhhhhHHHHHHhcCCCCcCeEEEECCCC-cHHHH-HHHHHHHcCCC
Confidence 33444444444333334678999999888 67744 56666666664
No 54
>PRK01415 hypothetical protein; Validated
Probab=92.00 E-value=0.97 Score=36.43 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcH
Q psy12442 33 NYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRA 112 (208)
Q Consensus 33 ~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RS 112 (208)
+++..+-+..=..||++++. .++.. -++| +...++...+.++...+........+.+|+++|.+| .||
T Consensus 117 ~e~~~ll~~~~~vvIDVRn~----~E~~~-----Ghi~--gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgG-iRs 184 (247)
T PRK01415 117 KDWDEFITKQDVIVIDTRND----YEVEV-----GTFK--SAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGG-IRC 184 (247)
T ss_pred HHHHHHHhCCCcEEEECCCH----HHHhc-----CCcC--CCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCC-hHH
Confidence 44544444444568888873 22221 1222 222233444544444443322234678999999888 677
Q ss_pred HHHHHHHHHHcCCC
Q psy12442 113 PVMVALALIELGLK 126 (208)
Q Consensus 113 g~~~~~~l~~~~~~ 126 (208)
. .++.+|...|+.
T Consensus 185 ~-kAa~~L~~~Gf~ 197 (247)
T PRK01415 185 E-KSTSLLKSIGYD 197 (247)
T ss_pred H-HHHHHHHHcCCC
Confidence 4 455666666654
No 55
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=91.69 E-value=2.6 Score=28.94 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=18.7
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.+.+|+|+|..|. ||.. ++..|...|+
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHHHHCCC
Confidence 4579999999985 7743 4555555666
No 56
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=91.66 E-value=0.43 Score=40.55 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=18.9
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHH
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALA 119 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~ 119 (208)
..+..|||||..|.+||+.++++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ 252 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLA 252 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHH
Confidence 578899999999999998877644
No 57
>KOG1089|consensus
Probab=90.91 E-value=0.48 Score=42.37 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=19.9
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHH
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALA 119 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~ 119 (208)
.+-+|||||..|.+||..++++.
T Consensus 343 ~~~sVlvhcsdGwDrT~qV~SLa 365 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTCQVSSLA 365 (573)
T ss_pred CCCeEEEEccCCcchhHHHHHHH
Confidence 56899999999999999887754
No 58
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.41 E-value=1.2 Score=38.14 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=18.8
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 99 TCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 99 ~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
.+|+|||..| .||.. ++..|...|++
T Consensus 333 ~~Ivv~C~sG-~RS~~-Aa~~L~~~G~~ 358 (370)
T PRK05600 333 DNVVVYCASG-IRSAD-FIEKYSHLGHE 358 (370)
T ss_pred CcEEEECCCC-hhHHH-HHHHHHHcCCC
Confidence 4899999999 77754 55666556653
No 59
>PRK05320 rhodanese superfamily protein; Provisional
Probab=89.70 E-value=2.7 Score=34.08 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 80 ELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
..+.++...+.......++.+|+++|..| .||.. ++.+|...|++
T Consensus 157 ~~f~~~~~~l~~~~~~~kdk~IvvyC~~G-~Rs~~-Aa~~L~~~Gf~ 201 (257)
T PRK05320 157 DKFTEFPEALAAHRADLAGKTVVSFCTGG-IRCEK-AAIHMQEVGID 201 (257)
T ss_pred hHhhhhHHHHHhhhhhcCCCeEEEECCCC-HHHHH-HHHHHHHcCCc
Confidence 33444433333332222567999999998 57744 56666666664
No 60
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=89.64 E-value=4.3 Score=28.37 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCcEEEEecCCC-CC-ccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCC
Q psy12442 32 PNYILELKKHQVKNVVRVCEPT-YK-VEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGL 109 (208)
Q Consensus 32 ~~~~~~l~~~gi~~Vv~l~~~~-~~-~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~ 109 (208)
++..+.+.+..-..||+++++. |. ...+. .-+++|+.+...+..+ ..+...+.... .+..+|+|+|..|
T Consensus 4 ~el~~~l~~~~~~~vIDvR~~~e~~~~ghIp----gA~~ip~~~~~~~~~~--~~~~~~l~~~~--~~~~~ivv~C~~G- 74 (117)
T cd01522 4 AEAWALLQADPQAVLVDVRTEAEWKFVGGVP----DAVHVAWQVYPDMEIN--PNFLAELEEKV--GKDRPVLLLCRSG- 74 (117)
T ss_pred HHHHHHHHhCCCeEEEECCCHHHHhcccCCC----CceecchhhccccccC--HHHHHHHHhhC--CCCCeEEEEcCCC-
Confidence 3444555554456789998742 22 11111 1234443332111000 12223332222 3567899999888
Q ss_pred CcHHHHHHHHHHHcCC
Q psy12442 110 GRAPVMVALALIELGL 125 (208)
Q Consensus 110 ~RSg~~~~~~l~~~~~ 125 (208)
.||... +..|...|.
T Consensus 75 ~rs~~a-a~~L~~~G~ 89 (117)
T cd01522 75 NRSIAA-AEAAAQAGF 89 (117)
T ss_pred ccHHHH-HHHHHHCCC
Confidence 577553 444445554
No 61
>KOG1530|consensus
Probab=87.40 E-value=3.5 Score=29.76 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=39.4
Q ss_pred HHHHHHhCCCcEEEEecCCCCCccccccCCe-EEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcH
Q psy12442 34 YILELKKHQVKNVVRVCEPTYKVEDLKTEGI-NVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRA 112 (208)
Q Consensus 34 ~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~-~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RS 112 (208)
....|-+.+-...|+++++ +++...++ .-+.+|.--........=.+|.+.+.... ......++|+|..| .||
T Consensus 29 qvk~L~~~~~~~llDVRep----eEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~k-p~~d~eiIf~C~SG-~Rs 102 (136)
T KOG1530|consen 29 QVKNLLQHPDVVLLDVREP----EEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSK-PPHDKEIIFGCASG-VRS 102 (136)
T ss_pred HHHHHhcCCCEEEEeecCH----HHhhccCCcceEeccccccccccccCCHHHHHHhcccC-CCCCCcEEEEeccC-cch
Confidence 3455556666888899883 44444333 23445532111111111233444444331 23345899999999 687
Q ss_pred HH
Q psy12442 113 PV 114 (208)
Q Consensus 113 g~ 114 (208)
..
T Consensus 103 ~~ 104 (136)
T KOG1530|consen 103 LK 104 (136)
T ss_pred hH
Confidence 54
No 62
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=86.83 E-value=2.4 Score=29.66 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=21.5
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
.++.+|+|+|..| ++++..++..|...|++
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTLRYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHHHHcCCC
Confidence 3578999999998 56666666666556654
No 63
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=84.49 E-value=9.9 Score=25.50 Aligned_cols=28 Identities=39% Similarity=0.640 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
++.+|+|.|..| .||.. ++.+|.+.|++
T Consensus 57 ~~~~vv~~c~~g-~rs~~-~~~~l~~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQ-VAQWLLRQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHH-HHHHHHHcCCc
Confidence 467999999988 57744 45555556654
No 64
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=82.37 E-value=4.9 Score=27.12 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=18.3
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
++.+|+|+|..|. ||. .++..|...|..
T Consensus 65 ~~~~ivv~c~~g~-~s~-~~~~~l~~~G~~ 92 (106)
T cd01519 65 KDKELIFYCKAGV-RSK-AAAELARSLGYE 92 (106)
T ss_pred CCCeEEEECCCcH-HHH-HHHHHHHHcCCc
Confidence 4679999999884 553 344444446653
No 65
>KOG2836|consensus
Probab=81.64 E-value=0.91 Score=32.96 Aligned_cols=28 Identities=61% Similarity=1.164 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHhhhhhhccC--CCCcchh
Q psy12442 144 SKQIAFLEKYKPKSRLKLKNG--QKNSCCL 171 (208)
Q Consensus 144 ~~q~~~l~~~~~~~~~~~~~~--~~~~~~~ 171 (208)
..|+.||..|...++|+++++ +.++|++
T Consensus 143 ~kql~~lekyrpk~rlr~k~~~gh~~~ccv 172 (173)
T KOG2836|consen 143 SKQLLYLEKYRPKMRLRFKDPNGHKNSCCV 172 (173)
T ss_pred HHHHHHHHHhCccceeeccCCCCCcccccc
Confidence 467889999999999999884 5666664
No 66
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=81.03 E-value=14 Score=24.79 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCcEEEEecCC-CCCccccccCCeEEEEeecCC----CCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCC
Q psy12442 33 NYILELKKHQVKNVVRVCEP-TYKVEDLKTEGINVKDLAYED----GTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVA 107 (208)
Q Consensus 33 ~~~~~l~~~gi~~Vv~l~~~-~~~~~~~~~~g~~~~~~p~~d----~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~ 107 (208)
+..+.+ ...=..||+++.. .|....+. | -+++|+.. ........+.......... ...+..|+|+|..
T Consensus 4 el~~~l-~~~~~~liD~R~~~~~~~~hI~--g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~yc~~ 76 (113)
T PF00581_consen 4 ELKEML-ENESVLLIDVRSPEEYERGHIP--G--AVNIPFPSLDPDEPSLSEDKLDEFLKELGKK--IDKDKDIVFYCSS 76 (113)
T ss_dssp HHHHHH-TTTTEEEEEESSHHHHHHSBET--T--EEEEEGGGGSSSSSBCHHHHHHHHHHHHTHG--STTTSEEEEEESS
T ss_pred HHHhhh-hCCCeEEEEeCCHHHHHcCCCC--C--Ccccccccccccccccccccccccccccccc--ccccccceeeeec
Confidence 334444 6677788898873 22222222 2 36666532 2222333444433333222 3456789999966
Q ss_pred CCCcHHHHHHH
Q psy12442 108 GLGRAPVMVAL 118 (208)
Q Consensus 108 G~~RSg~~~~~ 118 (208)
| .|++..+++
T Consensus 77 ~-~~~~~~~~~ 86 (113)
T PF00581_consen 77 G-WRSGSAAAA 86 (113)
T ss_dssp S-CHHHHHHHH
T ss_pred c-cccchhHHH
Confidence 6 566554444
No 67
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=80.51 E-value=6.9 Score=29.27 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=19.6
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.++.+|+|.|..|..||.. ++..|...|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~-aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN-AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH-HHHHHHhcCC
Confidence 3578999999998777765 3333334554
No 68
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=78.42 E-value=16 Score=25.76 Aligned_cols=41 Identities=24% Similarity=0.142 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCC------Cc----cccccCCeEEEEeec
Q psy12442 31 IPNYILELKKHQVKNVVRVCEPTY------KV----EDLKTEGINVKDLAY 71 (208)
Q Consensus 31 ~~~~~~~l~~~gi~~Vv~l~~~~~------~~----~~~~~~g~~~~~~p~ 71 (208)
++.+++.|+++||+.||+++...+ .. ..+...|+.|.+.|-
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~ 52 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPE 52 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechh
Confidence 567889999999999999886332 22 234456899999873
No 69
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=76.05 E-value=40 Score=28.00 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 72 EDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 72 ~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
.+-..|..+.|.+|...+.+.+....+.+|+.-|.+|+ |. =-+.+||...|+.
T Consensus 146 ~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~~~GF~ 198 (308)
T COG1054 146 EGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMKENGFK 198 (308)
T ss_pred cCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHHHhcch
Confidence 35556788899999999988776667789999999997 43 2355666666653
No 70
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=75.70 E-value=9.6 Score=22.46 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=25.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q psy12442 107 AGLGRAPVMVALALIELGLKYEDAVELIRQKR 138 (208)
Q Consensus 107 ~G~~RSg~~~~~~l~~~~~~~~~a~~~vr~~R 138 (208)
.|++|...-++.-|++.|.+++.-...++..|
T Consensus 17 tgLd~etL~ici~L~e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 17 TGLDRETLSICIELCENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHhC
Confidence 38999988888888999999986666666554
No 71
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=75.08 E-value=6 Score=26.21 Aligned_cols=29 Identities=31% Similarity=0.197 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
+..||+|.|..|...++..++..|...|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCc
Confidence 46799999999854444555555555554
No 72
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=74.65 E-value=26 Score=24.44 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=19.4
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
..+.+|+|+|..| .||.. ++..|...|+
T Consensus 70 ~~~~~ivv~C~~G-~rs~~-aa~~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRG-NDSQT-AVRKLKELGL 97 (122)
T ss_pred CCCCcEEEECCCC-CcHHH-HHHHHHHcCC
Confidence 4578999999998 47753 4444555666
No 73
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=73.99 E-value=26 Score=24.06 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCCCcHHHHH
Q psy12442 97 PDTCVAVHCVAGLGRAPVMV 116 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~ 116 (208)
...+|+|||..|-.||...+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCCEEEEECCCCCcccHHHH
Confidence 35689999998767876544
No 74
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=72.58 E-value=23 Score=30.06 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
++.+|+|+|..|-.||+.++ .+|...|+
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa-~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ-QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH-HHHHHcCC
Confidence 56799999987768887754 33434454
No 75
>PRK07411 hypothetical protein; Validated
Probab=65.75 E-value=19 Score=31.09 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
++.+|+|+|..|. ||.. ++..|...|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHHcCCC
Confidence 4678999998874 7744 45555556664
No 76
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=65.68 E-value=19 Score=31.92 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=18.7
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.+.+++|+|..|. ||.. ++.+|...|+
T Consensus 448 ~~~~iivyC~~G~-rS~~-aa~~L~~~G~ 474 (482)
T PRK01269 448 QSKTYLLYCDRGV-MSRL-QALYLREQGF 474 (482)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHHcCC
Confidence 4679999999994 7654 4555555555
No 77
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=65.27 E-value=6.5 Score=32.27 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=17.9
Q ss_pred CCCCCcHH-HHHHHHHHHcCCCHHHHHHH
Q psy12442 106 VAGLGRAP-VMVALALIELGLKYEDAVEL 133 (208)
Q Consensus 106 ~~G~~RSg-~~~~~~l~~~~~~~~~a~~~ 133 (208)
..|+|||| |++++.+ .|++.++|.++
T Consensus 165 iPGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 165 IPGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred ccCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 46999999 4455433 48888877653
No 78
>smart00400 ZnF_CHCC zinc finger.
Probab=64.77 E-value=9.7 Score=22.78 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=24.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Q psy12442 101 VAVHCVAGLGRAPVMVALALIELGLKYEDAVELI 134 (208)
Q Consensus 101 vlVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~v 134 (208)
=..||.+ -|..|-++..+....+.+..+|++.+
T Consensus 22 n~~~Cf~-cg~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 22 QFFHCFG-CGAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CEEEEeC-CCCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 4578875 46677766665555899999999875
No 79
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=63.82 E-value=12 Score=24.83 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=18.4
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
.+.+|+|+|..| .||.. ++.+|...|++
T Consensus 55 ~~~~iv~~c~~G-~rs~~-aa~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDG-VRADM-TASWLAQMGWE 82 (95)
T ss_pred CCCeEEEECCCC-ChHHH-HHHHHHHcCCE
Confidence 357899999988 56654 44445446653
No 80
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=63.55 E-value=14 Score=25.24 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=19.0
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.++.+|+|.|..|....+..++..|...|.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~ 91 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGF 91 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCC
Confidence 357899999998864333444444444565
No 81
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=62.16 E-value=66 Score=24.29 Aligned_cols=27 Identities=15% Similarity=-0.030 Sum_probs=18.2
Q ss_pred CCCCCCHHHHHHHHHhCCCcEEEEecC
Q psy12442 25 RPTDLTIPNYILELKKHQVKNVVRVCE 51 (208)
Q Consensus 25 ~p~~~~~~~~~~~l~~~gi~~Vv~l~~ 51 (208)
+|.+......++.|+++||++.+-+..
T Consensus 15 gp~~~~t~~~l~~L~~~~ikaTfFv~g 41 (191)
T TIGR02764 15 SWGNDYTEPILDTLKEYDVKATFFLSG 41 (191)
T ss_pred CCCcccHHHHHHHHHHcCCCEEEEecc
Confidence 355555566777888888887776653
No 82
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=61.37 E-value=13 Score=24.77 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=17.4
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.+.+|+|+|..| .||. .++..|...|+
T Consensus 60 ~~~~ivv~c~~g-~~s~-~~~~~l~~~G~ 86 (103)
T cd01447 60 EDKPFVFYCASG-WRSA-LAGKTLQDMGL 86 (103)
T ss_pred CCCeEEEEcCCC-CcHH-HHHHHHHHcCh
Confidence 567999999887 5664 34444434554
No 83
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=60.69 E-value=12 Score=26.40 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=16.1
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHH
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALI 121 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~ 121 (208)
+...+|+|||..+-.||+. ++.+|.
T Consensus 66 ~~~~~vv~yC~~sg~rs~~-aa~~L~ 90 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPR-MARHLR 90 (121)
T ss_pred CCCCEEEEECCCccccHHH-HHHHHH
Confidence 3578999999733377755 444443
No 84
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=60.65 E-value=9.8 Score=30.85 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=17.7
Q ss_pred CCCCCcHHH-HHHHHHHHcCCCHHHHHHH
Q psy12442 106 VAGLGRAPV-MVALALIELGLKYEDAVEL 133 (208)
Q Consensus 106 ~~G~~RSg~-~~~~~l~~~~~~~~~a~~~ 133 (208)
..|+||||+ ++++. ..|++.++|.++
T Consensus 159 iPGiSRSG~TI~a~l--~~G~~r~~Aa~f 185 (255)
T TIGR00753 159 IPGVSRSGSTISGGL--FIGLNRKAAAEF 185 (255)
T ss_pred ccCCCCchHHHHHHH--HcCCCHHHHHHH
Confidence 469999994 44443 357777777653
No 85
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=59.90 E-value=53 Score=22.41 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=13.6
Q ss_pred CCCcEEEEcCCCCCcHHHH
Q psy12442 97 PDTCVAVHCVAGLGRAPVM 115 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~ 115 (208)
...+|+|+|..+-.|+...
T Consensus 61 ~~~~iv~yC~~~~~r~~~a 79 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSA 79 (113)
T ss_pred CCCeEEEEeecCCcchHHH
Confidence 4578999998554677554
No 86
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=59.62 E-value=15 Score=25.02 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=18.1
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.+.+|+|+|..| .||... +..|...|+
T Consensus 57 ~~~~vvlyC~~G-~rS~~a-a~~L~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAG-RQSGMA-KDILLDMGY 83 (101)
T ss_pred CCCeEEEEeCCC-HHHHHH-HHHHHHcCC
Confidence 456899999998 477543 444545555
No 87
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=59.39 E-value=11 Score=30.85 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=18.2
Q ss_pred cCCCCCcHH-HHHHHHHHHcCCCHHHHHHH
Q psy12442 105 CVAGLGRAP-VMVALALIELGLKYEDAVEL 133 (208)
Q Consensus 105 C~~G~~RSg-~~~~~~l~~~~~~~~~a~~~ 133 (208)
...|+|||| |+.++. ..|++.++|.++
T Consensus 162 liPGiSRSG~TI~~~l--~~G~~r~~Aa~f 189 (268)
T PRK00281 162 LIPGTSRSGATISGGL--LLGLSREAAAEF 189 (268)
T ss_pred hCCCCCccHHHHHHHH--HcCCCHHHHHHH
Confidence 347999999 444443 367777777653
No 88
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=56.36 E-value=49 Score=22.57 Aligned_cols=27 Identities=48% Similarity=0.547 Sum_probs=16.9
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
++.+|+|+|..| .||.. ++..|-..|.
T Consensus 77 ~~~~iv~yc~~g-~~s~~-~~~~l~~~G~ 103 (118)
T cd01449 77 PDKPVIVYCGSG-VTACV-LLLALELLGY 103 (118)
T ss_pred CCCCEEEECCcH-HHHHH-HHHHHHHcCC
Confidence 567999999887 35544 3333333555
No 89
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=55.84 E-value=12 Score=30.47 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=15.5
Q ss_pred cEEEEcCCCCCcHHHHHH
Q psy12442 100 CVAVHCVAGLGRAPVMVA 117 (208)
Q Consensus 100 ~vlVHC~~G~~RSg~~~~ 117 (208)
.|.|=|.+|..||.+++=
T Consensus 245 TIaIGCTGGqHRSV~iae 262 (286)
T COG1660 245 TIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred EEEEccCCCccchHHHHH
Confidence 678899999999988764
No 90
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=55.53 E-value=20 Score=23.97 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 98 DTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 98 ~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
+.+|+|+|..|. ||+.++ ..|...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a-~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFA-AFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHH-HHHHHcCC
Confidence 578999999885 665543 34444555
No 91
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=54.58 E-value=52 Score=27.48 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 99 TCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 99 ~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
..|+|+|..|-.||..+ +.+|...|+
T Consensus 75 ~~vvvyC~~gG~RS~~a-a~~L~~~G~ 100 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSL-AWLLAQIGF 100 (311)
T ss_pred CcEEEEECCCChHHHHH-HHHHHHcCC
Confidence 34999997665788764 344444554
No 92
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=54.34 E-value=23 Score=23.43 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=19.1
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
.++.+|+|+|..| .||+. ++.+|...|.+
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQELLALGGK 82 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHHHHcCCC
Confidence 3567899999876 57754 44455556653
No 93
>PRK09875 putative hydrolase; Provisional
Probab=53.50 E-value=1.3e+02 Score=24.91 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=29.9
Q ss_pred CCCceeeeeeCceEEEeCCCCC--C--------CHHHHHHHHHhCCCcEEEEecCC
Q psy12442 7 RPAPAEIEFKGFKFLITDRPTD--L--------TIPNYILELKKHQVKNVVRVCEP 52 (208)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~p~~--~--------~~~~~~~~l~~~gi~~Vv~l~~~ 52 (208)
+|..+.+++-.-.+++...|-. . .....+..+++.|+++||+++..
T Consensus 2 ~~~~lG~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~ 57 (292)
T PRK09875 2 SFDPTGYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNR 57 (292)
T ss_pred ChhhCCcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCC
Confidence 4666677766666665554321 1 12345667789999999999864
No 94
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=53.19 E-value=68 Score=21.61 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=18.1
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
.+.+++|+|..|. ||. .++..|...|++
T Consensus 57 ~~~~ivv~c~~g~-~s~-~a~~~L~~~G~~ 84 (108)
T PRK00162 57 FDTPVMVMCYHGN-SSQ-GAAQYLLQQGFD 84 (108)
T ss_pred CCCCEEEEeCCCC-CHH-HHHHHHHHCCch
Confidence 4678999999884 553 344444445653
No 95
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=52.67 E-value=28 Score=23.91 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=17.4
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.+.+|+|+|..| .||... +..|...|+
T Consensus 59 ~~~~IVlyC~~G-~rS~~a-a~~L~~~G~ 85 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQA-KEILSEMGY 85 (104)
T ss_pred CCCeEEEEeCCC-hHHHHH-HHHHHHcCC
Confidence 456899999887 566543 444444554
No 96
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=51.08 E-value=74 Score=25.88 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=17.6
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.++.+|+|+|..|. ++++++.+|...|+
T Consensus 229 ~~~~~ii~yC~~G~--~A~~~~~~l~~~G~ 256 (281)
T PRK11493 229 SFDRPIIASCGSGV--TAAVVVLALATLDV 256 (281)
T ss_pred CCCCCEEEECCcHH--HHHHHHHHHHHcCC
Confidence 35679999998875 33444444444555
No 97
>KOG3824|consensus
Probab=50.08 E-value=1.1e+02 Score=25.84 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=45.8
Q ss_pred ccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhC--------------CCCcEEEEc-CCCCCcHHHH-HHHHHHHc
Q psy12442 60 KTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFRED--------------PDTCVAVHC-VAGLGRAPVM-VALALIEL 123 (208)
Q Consensus 60 ~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~--------------~~~~vlVHC-~~G~~RSg~~-~~~~l~~~ 123 (208)
+..-|+...+-+-.+.+|.++.+..-++.+.+|+... .-.-|+||= ..|-|||.-+ .-..||..
T Consensus 315 EaGrfRttQVyVG~hiPp~P~dv~~qmq~fv~WLNsE~~~tlhPve~AAlAHYKLV~iHPF~DGNGRTsRLLmNlilMra 394 (472)
T KOG3824|consen 315 EAGRFRTTQVYVGRHIPPSPEDVMEQMQDFVDWLNSESTLTLHPVERAALAHYKLVLIHPFTDGNGRTSRLLMNLILMRA 394 (472)
T ss_pred cccceeeeeEEecCCCCCChHHHHHHHHHHHHHhccccccccChHHHHHHhhheeEEEeccccCCchHHHHHHHHHHHhc
Confidence 3334555566656678888888888777777887521 124678885 4699999854 44566778
Q ss_pred CCCH
Q psy12442 124 GLKY 127 (208)
Q Consensus 124 ~~~~ 127 (208)
|..+
T Consensus 395 GyPP 398 (472)
T KOG3824|consen 395 GYPP 398 (472)
T ss_pred CCCC
Confidence 8754
No 98
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=49.64 E-value=30 Score=24.42 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=18.6
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHH-cCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIE-LGL 125 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~-~~~ 125 (208)
.++.+|+|.|..|-.||..++ ++++ .|.
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 456899999986556776443 4444 565
No 99
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=49.60 E-value=1.7e+02 Score=25.04 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=51.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHH------hhh
Q psy12442 20 FLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLK------SVF 93 (208)
Q Consensus 20 ~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~------~~l 93 (208)
-++..|-++.........|+..|.+.|.++..- -..|...|.... .....+...+..+...+. +.+
T Consensus 59 ~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG---~~~W~~~g~p~~-----~~~~~s~~~~~~y~r~i~l~~~g~~~q 130 (376)
T PRK08762 59 EIVLICASGTRSAHAAATLRELGYTRVASVAGG---FSAWKDAGLPLE-----RPRLLTDEQDERYSRHLRLPEVGEEGQ 130 (376)
T ss_pred eEEEEcCCCcHHHHHHHHHHHcCCCceEeecCc---HHHHHhcCCccc-----cccCCCHHHHHHHHHhcchhhcCHHHH
Confidence 344555555544556678899999988877652 234444443332 222223333333333221 011
Q ss_pred hhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 94 REDPDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 94 ~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
..-.+.+|+|. |.|-.|..++.+|...|+
T Consensus 131 ~~l~~~~Vlvv---G~GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 131 RRLLEARVLLI---GAGGLGSPAALYLAAAGV 159 (376)
T ss_pred HHHhcCcEEEE---CCCHHHHHHHHHHHHcCC
Confidence 12245678887 777778888888876553
No 100
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=49.46 E-value=20 Score=29.34 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=15.9
Q ss_pred CCCCcHH-HHHHHHHHHcCCCHHHHHH
Q psy12442 107 AGLGRAP-VMVALALIELGLKYEDAVE 132 (208)
Q Consensus 107 ~G~~RSg-~~~~~~l~~~~~~~~~a~~ 132 (208)
.|.|||| |+.++.+ .|++.++|.+
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aae 189 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAE 189 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHH
Confidence 6899999 5666554 3555665544
No 101
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=49.33 E-value=43 Score=27.65 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=15.6
Q ss_pred cEEEEcCCCCCcHHHHHH
Q psy12442 100 CVAVHCVAGLGRAPVMVA 117 (208)
Q Consensus 100 ~vlVHC~~G~~RSg~~~~ 117 (208)
.|.|=|.+|..||++++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 688999999999988664
No 102
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=48.89 E-value=24 Score=23.90 Aligned_cols=35 Identities=14% Similarity=0.414 Sum_probs=22.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHh
Q psy12442 102 AVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQK 137 (208)
Q Consensus 102 lVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~vr~~ 137 (208)
..||.+ -|.+|-++..+.-..+++..+|++++.+.
T Consensus 54 ~~~Cf~-Cg~~Gd~i~~v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGGDVIDFVMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE-HHHHHHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCCcHHhHHHHHhCCCHHHHHHHHHHH
Confidence 789985 67888766665444899999999998764
No 103
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=48.36 E-value=36 Score=22.18 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.+.+++|+|..| .|| ..++.+|...|.
T Consensus 55 ~~~~ivv~c~~g-~~s-~~a~~~l~~~G~ 81 (96)
T cd01444 55 RDRPVVVYCYHG-NSS-AQLAQALREAGF 81 (96)
T ss_pred CCCCEEEEeCCC-ChH-HHHHHHHHHcCC
Confidence 577999999955 454 334444544554
No 104
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=48.33 E-value=1.7e+02 Score=24.72 Aligned_cols=102 Identities=12% Similarity=-0.007 Sum_probs=52.4
Q ss_pred EEEeCCCCCC--CHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCC-CCCHHHHHHHHHHHHhhh---
Q psy12442 20 FLITDRPTDL--TIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGT-SPSPELVDEWFEFLKSVF--- 93 (208)
Q Consensus 20 ~~~~~~p~~~--~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~-~p~~~~~~~~~~~i~~~l--- 93 (208)
+++..+.|+. +.-...+.|++.|....+--.+...+.+.+...|+.+..++..... ......+......+...+
T Consensus 5 ~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
T PRK12446 5 VFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAY 84 (352)
T ss_pred EEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3444445553 4445567777777766666655555555566668888888743211 112222222222222111
Q ss_pred h-hCCCCcEEEEcCCCCCcHHHHHHHHHH
Q psy12442 94 R-EDPDTCVAVHCVAGLGRAPVMVALALI 121 (208)
Q Consensus 94 ~-~~~~~~vlVHC~~G~~RSg~~~~~~l~ 121 (208)
. -....|=+||+.+|.---..+.++.++
T Consensus 85 ~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~ 113 (352)
T PRK12446 85 VRIRKLKPDVIFSKGGFVSVPVVIGGWLN 113 (352)
T ss_pred HHHHhcCCCEEEecCchhhHHHHHHHHHc
Confidence 1 123567888887765433344555543
No 105
>PRK10302 hypothetical protein; Provisional
Probab=47.99 E-value=1.5e+02 Score=24.22 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=55.4
Q ss_pred CceeeeeeCceEEEeCCCCCCCHHH-HHHHHHhCCCcEEEEecC-------------------CCCCccccccCCeEEEE
Q psy12442 9 APAEIEFKGFKFLITDRPTDLTIPN-YILELKKHQVKNVVRVCE-------------------PTYKVEDLKTEGINVKD 68 (208)
Q Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~l~~~gi~~Vv~l~~-------------------~~~~~~~~~~~g~~~~~ 68 (208)
.++-|+.++..|. .+...+. ..+.|+++||..|+.=.. ...+........+-|++
T Consensus 125 ~~~AvEfRh~sW~-----~~~~~~~~l~~lL~~~~~~~v~~D~~~~~~~~~~~~~~~daq~~~~~~P~~~~~T~~~~yvR 199 (272)
T PRK10302 125 FTYGVEVRHPEFF-----AKGEAEQALNRGLHQRGVNRVILDSRPVHAARPHSEAIRDAQRKKPKVPVHAVVTADNPLVR 199 (272)
T ss_pred CCEEEEccCHHHc-----CCchhHHHHHHHHHHcCCEEEecCccccccCCCCcHHHHHHhhcCCCCCCCeecCCCcEEEE
Confidence 3455556666665 2222333 336899999998865542 11212222223556666
Q ss_pred eecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHH
Q psy12442 69 LAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAP 113 (208)
Q Consensus 69 ~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg 113 (208)
+--.+....+.+.+..+.+.|.+|. ....--|.+|+..+ +.+.
T Consensus 200 lhG~~~~~y~~~~L~~wa~~i~~w~-~~~~~yvff~n~~~-~~A~ 242 (272)
T PRK10302 200 FIGSDDMAQNLELFQVWLQKLPQWH-QTTTPYLFIHTPDI-AQAP 242 (272)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCch-hhHH
Confidence 5433333346778999999999883 22344677787765 4443
No 106
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=47.01 E-value=39 Score=22.32 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=17.7
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
+.+.+|+|+|..| .||.. ++..|.+.|.
T Consensus 52 ~~~~~iv~~c~~g-~~s~~-~~~~L~~~g~ 79 (99)
T cd01527 52 VGANAIIFHCRSG-MRTQQ-NAERLAAISA 79 (99)
T ss_pred CCCCcEEEEeCCC-chHHH-HHHHHHHcCC
Confidence 3567999999988 45543 4444444454
No 107
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=45.18 E-value=32 Score=20.57 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=15.0
Q ss_pred HHHHHHH-cCCCHHHHHHHHHH
Q psy12442 116 VALALIE-LGLKYEDAVELIRQ 136 (208)
Q Consensus 116 ~~~~l~~-~~~~~~~a~~~vr~ 136 (208)
+...||. .|++.++|++.++.
T Consensus 18 AkgiLm~~~g~~e~~A~~~Lr~ 39 (56)
T PF03861_consen 18 AKGILMARYGLSEDEAYRLLRR 39 (56)
T ss_dssp HHHHHHHHHT--HHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHH
Confidence 3456676 89999999999886
No 108
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=44.97 E-value=1e+02 Score=27.72 Aligned_cols=96 Identities=8% Similarity=0.025 Sum_probs=53.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCCCCcccc-ccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhC
Q psy12442 18 FKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDL-KTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFRED 96 (208)
Q Consensus 18 ~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~-~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~ 96 (208)
.-++.|..||+.. +...+.+..+||..|+.-++.+.+-..+ ...-++|+.+++++....-.+.+..+++-.-+.+
T Consensus 164 ~ilgLTASPGs~~-ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L--- 239 (542)
T COG1111 164 LILGLTASPGSDL-EKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPL--- 239 (542)
T ss_pred eEEEEecCCCCCH-HHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHH---
Confidence 4577888888754 6777888999999999998865443332 2223566666544432222222222222222222
Q ss_pred CCCcEEEEcCCCCCcHHHHHHH
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVAL 118 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~ 118 (208)
....+..-|.. +++-..+.+.
T Consensus 240 ~~~g~~~~~~~-~~~kdl~~~~ 260 (542)
T COG1111 240 KELGVIESSSP-VSKKDLLELR 260 (542)
T ss_pred HHcCceeccCc-ccHhHHHHHH
Confidence 23346666665 6665544443
No 109
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=44.16 E-value=62 Score=22.59 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCC
Q psy12442 32 PNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVA 107 (208)
Q Consensus 32 ~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~ 107 (208)
.+..+.|.+.|.+..|-..............++.+..+|+.....+. . ...+...+..++......+-+|||..
T Consensus 8 ~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~Dvv~~~~ 81 (160)
T PF13579_consen 8 RELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPL-R-LLRFLRRLRRLLAARRERPDVVHAHS 81 (160)
T ss_dssp HHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGG-G-HCCHHHHHHHHCHHCT---SEEEEEH
T ss_pred HHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhh-h-hHHHHHHHHHHHhhhccCCeEEEecc
Confidence 35567888888766655544332233345668999999876653211 1 12233344444422356778999877
No 110
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=44.00 E-value=25 Score=23.06 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=13.1
Q ss_pred cEEEEcCCCCCcHHHHHH
Q psy12442 100 CVAVHCVAGLGRAPVMVA 117 (208)
Q Consensus 100 ~vlVHC~~G~~RSg~~~~ 117 (208)
.|+|.|.+|.|=| ++++
T Consensus 2 kilvvCg~G~gtS-~ml~ 18 (87)
T cd05567 2 KIVFACDAGMGSS-AMGA 18 (87)
T ss_pred EEEEECCCCccHH-HHHH
Confidence 5899999999865 4444
No 111
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=41.70 E-value=25 Score=23.72 Aligned_cols=18 Identities=28% Similarity=0.704 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q psy12442 98 DTCVAVHCVAGLGRAPVMV 116 (208)
Q Consensus 98 ~~~vlVHC~~G~~RSg~~~ 116 (208)
...||+-|.+|++ |..++
T Consensus 3 ~~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLV 20 (95)
T ss_pred ccEEEEECCCchh-HHHHH
Confidence 3579999999998 55544
No 112
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=40.88 E-value=17 Score=24.78 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=8.7
Q ss_pred CcEEEEcCCC
Q psy12442 99 TCVAVHCVAG 108 (208)
Q Consensus 99 ~~vlVHC~~G 108 (208)
..++|||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 5899999877
No 113
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=39.68 E-value=1.5e+02 Score=25.14 Aligned_cols=101 Identities=10% Similarity=0.055 Sum_probs=57.4
Q ss_pred EEEeCCCCCCCHHHHHHHHHhC-CCcEEEEecCCCCCc------cccccCCeEE---EEeecCC-CCCCCHHHHHHHHHH
Q psy12442 20 FLITDRPTDLTIPNYILELKKH-QVKNVVRVCEPTYKV------EDLKTEGINV---KDLAYED-GTSPSPELVDEWFEF 88 (208)
Q Consensus 20 ~~~~~~p~~~~~~~~~~~l~~~-gi~~Vv~l~~~~~~~------~~~~~~g~~~---~~~p~~d-~~~p~~~~~~~~~~~ 88 (208)
+++..+|.=-.++-.+..|+++ ++..++..+...++. ..+...|+.. ..+.+.. ......+.+...+..
T Consensus 5 ~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (365)
T TIGR03568 5 VVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTIIG 84 (365)
T ss_pred EEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHHHHHHH
Confidence 3444445444556667778764 799998888866542 2333334422 1222222 122234566666666
Q ss_pred HHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHH
Q psy12442 89 LKSVFREDPDTCVAVHCVAGLGRAPVMVALAL 120 (208)
Q Consensus 89 i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l 120 (208)
+.+.+...+..-|+||......-.++++|.++
T Consensus 85 ~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~ 116 (365)
T TIGR03568 85 FSDAFERLKPDLVVVLGDRFEMLAAAIAAALL 116 (365)
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHHHh
Confidence 66666655567899998555444566666665
No 114
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=39.45 E-value=2e+02 Score=24.86 Aligned_cols=70 Identities=11% Similarity=0.247 Sum_probs=41.3
Q ss_pred cccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy12442 57 EDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQ 136 (208)
Q Consensus 57 ~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~vr~ 136 (208)
..+...|+.|..+|+.+...++.+.+.+.+. .+-.-|+|.=+.|-+.-.++...-+ +++++.+|+
T Consensus 122 GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~--------~~tk~v~IQRSrGYs~R~sl~i~~I-------~~~i~~vk~ 186 (403)
T PF06838_consen 122 GSLKEFGIKYREVPLTEDGTIDWEAIKKALK--------PNTKMVLIQRSRGYSWRPSLTIEEI-------KEIIKFVKE 186 (403)
T ss_dssp SSTGGGT-EEEE--B-TTSSB-HHHHHHHHH--------TTEEEEEEE-S-TTSSS----HHHH-------HHHHHHHHH
T ss_pred CChHHhCceeEEEeecCCCCcCHHHHHHhhc--------cCceEEEEecCCCCCCCCCCCHHHH-------HHHHHHHHh
Confidence 4556779999999998877777555544443 1345788888888776666655544 789999999
Q ss_pred hCCCC
Q psy12442 137 KRRGA 141 (208)
Q Consensus 137 ~R~~~ 141 (208)
..|..
T Consensus 187 ~~p~~ 191 (403)
T PF06838_consen 187 INPDV 191 (403)
T ss_dssp H-TTS
T ss_pred hCCCe
Confidence 99985
No 115
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=38.87 E-value=58 Score=26.89 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=15.4
Q ss_pred cEEEEcCCCCCcHHHHHH
Q psy12442 100 CVAVHCVAGLGRAPVMVA 117 (208)
Q Consensus 100 ~vlVHC~~G~~RSg~~~~ 117 (208)
.|.|=|.+|..||.+++-
T Consensus 247 ~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred EEEEecCCCcccHHHHHH
Confidence 588999999999987654
No 116
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=38.41 E-value=10 Score=21.41 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=18.1
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
-++|.|+|-|.-|+ .|..+.+.+++.+|
T Consensus 6 lp~GVIlVF~lVgl--v~i~iva~~iYRKw 33 (43)
T PF08114_consen 6 LPGGVILVFCLVGL--VGIGIVALFIYRKW 33 (43)
T ss_pred CCCCeeeehHHHHH--HHHHHHHHHHHHHH
Confidence 47899999998886 34444444444443
No 117
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=38.35 E-value=42 Score=27.27 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=18.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHH
Q psy12442 106 VAGLGRAPVMVALALIELGLKYEDAVEL 133 (208)
Q Consensus 106 ~~G~~RSg~~~~~~l~~~~~~~~~a~~~ 133 (208)
..|+||||+-+++- +..|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~-l~~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAG-LLLGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHH-HHCCCCHHHHHHH
Confidence 46999999644443 3467777777653
No 118
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=37.15 E-value=2.4e+02 Score=26.03 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=13.6
Q ss_pred CCCCcEEEEcCCCCCcHHH
Q psy12442 96 DPDTCVAVHCVAGLGRAPV 114 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~ 114 (208)
.++.+|+|+|..|. |++.
T Consensus 221 ~~~~~VVvYC~sG~-rAa~ 238 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGF 238 (610)
T ss_pred CCCCCEEEECCCCh-HHHH
Confidence 35679999999985 5553
No 119
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=36.90 E-value=1.5e+02 Score=24.77 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCCCHH
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGLKYE 128 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~~~ 128 (208)
.+-||.+||..|. +.|.=++.+|.+.|.+++
T Consensus 154 TG~pI~~H~~~g~-~~~~e~~~il~e~Gv~~~ 184 (308)
T PF02126_consen 154 TGAPISTHTGRGT-RMGLEQLDILEEEGVDPS 184 (308)
T ss_dssp HT-EEEEEESTTG-TCHHHHHHHHHHTT--GG
T ss_pred hCCeEEEcCCCCC-cCHHHHHHHHHHcCCChh
Confidence 4789999998774 356666666666777654
No 120
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=36.54 E-value=1.1e+02 Score=19.35 Aligned_cols=30 Identities=43% Similarity=0.572 Sum_probs=17.9
Q ss_pred hCCCCcEEEEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 95 EDPDTCVAVHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 95 ~~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
..++.+|+|+|..| .|+ ..++.+|...|..
T Consensus 53 ~~~~~~iv~~c~~g-~~a-~~~~~~l~~~G~~ 82 (100)
T smart00450 53 LDKDKPVVVYCRSG-NRS-AKAAWLLRELGFK 82 (100)
T ss_pred CCCCCeEEEEeCCC-cHH-HHHHHHHHHcCCC
Confidence 34678999999554 455 3344444445543
No 121
>PHA03338 US22 family homolog; Provisional
Probab=36.19 E-value=37 Score=28.01 Aligned_cols=39 Identities=18% Similarity=0.417 Sum_probs=27.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHH--cCCCHHHHHHHHHHhCCC
Q psy12442 102 AVHCVAGLGRAPVMVALALIE--LGLKYEDAVELIRQKRRG 140 (208)
Q Consensus 102 lVHC~~G~~RSg~~~~~~l~~--~~~~~~~a~~~vr~~R~~ 140 (208)
-+||.+|++-||.+.-.+.+. .+..++....++......
T Consensus 160 pihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HGe 200 (344)
T PHA03338 160 PIHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHGE 200 (344)
T ss_pred EeccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccCc
Confidence 459999999999888766543 666666555666555433
No 122
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=35.83 E-value=2.2e+02 Score=22.48 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCcEEEEecC-CC--CCc-------cccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEE
Q psy12442 33 NYILELKKHQVKNVVRVCE-PT--YKV-------EDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVA 102 (208)
Q Consensus 33 ~~~~~l~~~gi~~Vv~l~~-~~--~~~-------~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vl 102 (208)
+.++..++.|+...+++.. .. ++. +.+...|...+.++ +-.....++.+.+++..+.+.. ++-++-
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~v~~li~~l~~~~---~~~~~~ 194 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK-DTVGLATPEEVAELVKALREAL---PDVPLG 194 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec-hhcCCcCHHHHHHHHHHHHHhC---CCCeEE
Confidence 4456678999999999954 22 222 23345566666665 2244566677888888877653 237899
Q ss_pred EEcCCCCC
Q psy12442 103 VHCVAGLG 110 (208)
Q Consensus 103 VHC~~G~~ 110 (208)
+||+.-.|
T Consensus 195 ~H~Hn~~g 202 (265)
T cd03174 195 LHTHNTLG 202 (265)
T ss_pred EEeCCCCC
Confidence 99976444
No 123
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=34.48 E-value=77 Score=19.86 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=17.7
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELG 124 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~ 124 (208)
.++.+|+|+|..| .|+ ..++.+|...|
T Consensus 48 ~~~~~vv~~c~~~-~~a-~~~~~~l~~~G 74 (89)
T cd00158 48 DKDKPIVVYCRSG-NRS-ARAAKLLRKAG 74 (89)
T ss_pred CCCCeEEEEeCCC-chH-HHHHHHHHHhC
Confidence 4678999999986 344 44555554454
No 124
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=34.34 E-value=91 Score=24.37 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHH
Q psy12442 98 DTCVAVHCVAGLGRAPVMVALALI 121 (208)
Q Consensus 98 ~~~vlVHC~~G~~RSg~~~~~~l~ 121 (208)
.|.|+| .|+||||.+.-++-|
T Consensus 39 ~gkv~V---~G~GkSG~Igkk~Aa 59 (202)
T COG0794 39 KGKVFV---TGVGKSGLIGKKFAA 59 (202)
T ss_pred CCcEEE---EcCChhHHHHHHHHH
Confidence 567777 589999998766654
No 125
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=32.39 E-value=1.3e+02 Score=24.39 Aligned_cols=29 Identities=14% Similarity=0.022 Sum_probs=16.9
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.++.+|+|.|..| +++++.++..|...|+
T Consensus 85 ~~d~~VVvyc~~~-~~~a~~~~~~l~~~G~ 113 (281)
T PRK11493 85 NQDKHLVVYDEGN-LFSAPRAWWMLRTFGV 113 (281)
T ss_pred CCCCEEEEECCCC-CchHHHHHHHHHHhcC
Confidence 3567999999766 4444433333333554
No 126
>PRK15043 transcriptional regulator MirA; Provisional
Probab=31.63 E-value=1.6e+02 Score=23.81 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=41.1
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHH-cCCCHHHH--------HHHHHHhC-----CCCCCHHHHHHHHHHhHhh
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDA--------VELIRQKR-----RGAINSKQIAFLEKYKPKS 157 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~-~~~~~~~a--------~~~vr~~R-----~~~~~~~q~~~l~~~~~~~ 157 (208)
..+.++|+-|..|.+++.....+++.. .|+..+-. =+.+..+. ....++.|++++..|++.-
T Consensus 160 ~~~~~~Ll~~~~~~~~~~lwl~a~~l~~~g~~v~vl~~~~~~~~pelf~~~~~~~~~~~~~t~~q~~~~~~w~~~g 235 (243)
T PRK15043 160 KQGKDALVVGWNIHDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQG 235 (243)
T ss_pred cCCCCEEEEeCCCCCcHHHHHHHHHHhcCCceEEEeCCcccccChhhcCCCeEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 456789999999999999888877765 66543211 11222222 1234679999999998754
No 127
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=30.25 E-value=95 Score=20.02 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=16.9
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.+.+|++.|..| .|+ ..++..|...|.
T Consensus 50 ~~~~vvl~c~~g-~~a-~~~a~~L~~~G~ 76 (90)
T cd01524 50 KDKEIIVYCAVG-LRG-YIAARILTQNGF 76 (90)
T ss_pred CCCcEEEEcCCC-hhH-HHHHHHHHHCCC
Confidence 467899999986 344 334444444554
No 128
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=29.75 E-value=32 Score=22.40 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=11.9
Q ss_pred cEEEEcCCCCCcHHH
Q psy12442 100 CVAVHCVAGLGRAPV 114 (208)
Q Consensus 100 ~vlVHC~~G~~RSg~ 114 (208)
+|++-|.+|+|=|-.
T Consensus 1 kIlvvC~~Gi~TS~~ 15 (90)
T PF02302_consen 1 KILVVCGSGIGTSLM 15 (90)
T ss_dssp EEEEEESSSSHHHHH
T ss_pred CEEEECCChHHHHHH
Confidence 489999999976643
No 129
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=28.31 E-value=2.1e+02 Score=20.01 Aligned_cols=29 Identities=21% Similarity=0.105 Sum_probs=19.4
Q ss_pred eEEEEeecCCCCCCCHHHHHHHHHHHHhh
Q psy12442 64 INVKDLAYEDGTSPSPELVDEWFEFLKSV 92 (208)
Q Consensus 64 ~~~~~~p~~d~~~p~~~~~~~~~~~i~~~ 92 (208)
..+.+|+++|......+.+.+..+.|...
T Consensus 93 ~~~~~w~i~DP~~~~~~~f~~~~~~I~~~ 121 (126)
T TIGR02689 93 EIFEDWQLEDPDGQSIEVFRRVRDEIKER 121 (126)
T ss_pred ceeecCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 34567888886545667777777776654
No 130
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=28.15 E-value=1.4e+02 Score=24.87 Aligned_cols=46 Identities=24% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhCCCcEEEEecCCC--------CC-----ccccccCCe-EEEEeecCCC
Q psy12442 29 LTIPNYILELKKHQVKNVVRVCEPT--------YK-----VEDLKTEGI-NVKDLAYEDG 74 (208)
Q Consensus 29 ~~~~~~~~~l~~~gi~~Vv~l~~~~--------~~-----~~~~~~~g~-~~~~~p~~d~ 74 (208)
..+.+.++.|.+.|++.|+.+...- |+ .+.+...|+ .|..+|..+.
T Consensus 241 P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~ 300 (316)
T PF00762_consen 241 PSTEDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLND 300 (316)
T ss_dssp SBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT
T ss_pred ccHHHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCC
Confidence 4678889999999999999997520 11 244556678 8899997765
No 131
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=27.69 E-value=1.1e+02 Score=22.27 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.+.+|+|+|..| ..+..++..|...|.
T Consensus 48 ~~~~vVv~c~~g--~~a~~aa~~L~~~G~ 74 (145)
T cd01535 48 AAERYVLTCGSS--LLARFAAADLAALTV 74 (145)
T ss_pred CCCCEEEEeCCC--hHHHHHHHHHHHcCC
Confidence 467999999885 344455555544443
No 132
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=27.42 E-value=2.3e+02 Score=20.07 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=15.7
Q ss_pred eEEEEeecCCCCCCC------HHHHHHHHHHHHh
Q psy12442 64 INVKDLAYEDGTSPS------PELVDEWFEFLKS 91 (208)
Q Consensus 64 ~~~~~~p~~d~~~p~------~~~~~~~~~~i~~ 91 (208)
..+.+|+++|...-. .+.+.+..+.|..
T Consensus 91 ~~~~~w~i~DP~~~~g~~~~~~~~~~~~~~~I~~ 124 (129)
T TIGR02691 91 VKREHWGLDDPARAEGTEEEKWAVFRRVRDEIKE 124 (129)
T ss_pred CeEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456689888853323 4445555555544
No 133
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=26.99 E-value=92 Score=28.70 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=27.9
Q ss_pred ccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcH
Q psy12442 58 DLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRA 112 (208)
Q Consensus 58 ~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RS 112 (208)
.|+..|+.|.. |++.+ +.+.+.+.++.+.. .++|++|||..=+|+-
T Consensus 233 ~f~~~G~~~~~-~vDGh---d~~~l~~al~~ak~-----~~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 233 FFEELGFNYIG-PVDGH---DLLELIETLKNAKK-----LKGPVFLHIQTKKGKG 278 (617)
T ss_pred hHHHcCCcEEc-ccCCC---CHHHHHHHHHHHhc-----CCCCEEEEEEecCCCC
Confidence 36667877765 65444 33444444444332 3579999999866664
No 134
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=26.80 E-value=46 Score=23.85 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcH
Q psy12442 81 LVDEWFEFLKSVFREDPDTCVAVHCVAGLGRA 112 (208)
Q Consensus 81 ~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RS 112 (208)
.+...++.+...- ....+.++|||+...+-.
T Consensus 80 aI~~va~~La~~~-~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 80 AIAEVAEQLAQYG-AWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHHHHHHHCC---S-TT-EEEES-SS--GG
T ss_pred HHHHHHHHHHHhc-cCCCCcEEEECCCCChHH
Confidence 4566666655431 123578999998776543
No 135
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=26.70 E-value=1.3e+02 Score=24.60 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=34.9
Q ss_pred HHhhhhhCCCCcEEEEcCCCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q psy12442 89 LKSVFREDPDTCVAVHCVAGLGRAPVMVALAL-IELGLKYEDAVELIRQKRRGAI--NSKQIAFLEKY 153 (208)
Q Consensus 89 i~~~l~~~~~~~vlVHC~~G~~RSg~~~~~~l-~~~~~~~~~a~~~vr~~R~~~~--~~~q~~~l~~~ 153 (208)
|-+.+..+...|+.|-|++| +-|++-|+. ++...+.+++-+.+.+.|-..| +..-..++..-
T Consensus 105 Ii~~~~~~d~rPLwi~~WGG---~ntlAqAL~~i~~~~~~~~~~~~~~Klrvy~I~dQDdtg~wIr~~ 169 (260)
T PF07632_consen 105 IIEALDKDDPRPLWILVWGG---TNTLAQALWDIKETRSPEEAARFVSKLRVYSISDQDDTGAWIRKN 169 (260)
T ss_dssp HHHHHHSS-SS-EEEEESS----SHHHHHHHHHHHHHS-HHHHHHHHHTEEEEEES--SHHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEecCC---HHHHHHHHHHHHHhcCHHHHHHHHhhEEEEeccCCcchhhHHHHh
Confidence 33333345678999999999 456665554 4566777777777777775544 22225555533
No 136
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=25.86 E-value=87 Score=25.64 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=24.0
Q ss_pred cccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcC
Q psy12442 57 EDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCV 106 (208)
Q Consensus 57 ~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~ 106 (208)
..|+..|+.|+- |++.+ +.+.+.+.++.+.+ -.+||+||..
T Consensus 229 ~lFe~LG~~Y~G-PiDGH---dl~~Li~~l~~~K~-----~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYIG-PIDGH---DLEELIEVLENAKD-----IDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEEE-EEETT----HHHHHHHHHHHCC-----SSSEEEEEEE
T ss_pred HHHHHcCCeEEe-ccCCC---CHHHHHHHHHHHhc-----CCCCEEEEEe
Confidence 567777888864 43444 33444444444443 4799999963
No 137
>KOG1004|consensus
Probab=25.81 E-value=1.8e+02 Score=23.05 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=27.8
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHH
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQ 136 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~-~~~~~~~a~~~vr~ 136 (208)
-+|.|+|||..- +...+++-+||. ..++.++++..+++
T Consensus 184 lNGriWV~ae~~--~~t~~i~~~l~~~e~~td~~q~~~~k~ 222 (230)
T KOG1004|consen 184 LNGRIWVKAETL--SDTLIIANILMNCEFMTDTQQRIMVKQ 222 (230)
T ss_pred cCceEEEeccCc--chHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 468999999753 455666777887 78998887755543
No 138
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=25.65 E-value=91 Score=18.53 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=13.1
Q ss_pred HHHHcCCCHHHHHHHHHH
Q psy12442 119 ALIELGLKYEDAVELIRQ 136 (208)
Q Consensus 119 ~l~~~~~~~~~a~~~vr~ 136 (208)
-||..|+|.-+|+..|..
T Consensus 22 ~LMaqGmSsgEAI~~VA~ 39 (51)
T PF03701_consen 22 ELMAQGMSSGEAIAIVAQ 39 (51)
T ss_pred HHHHhcccHHHHHHHHHH
Confidence 356778888888877654
No 139
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=25.53 E-value=3.3e+02 Score=21.23 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCCcEEEEecCCC-CCc-------cccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEE
Q psy12442 32 PNYILELKKHQVKNVVRVCEPT-YKV-------EDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAV 103 (208)
Q Consensus 32 ~~~~~~l~~~gi~~Vv~l~~~~-~~~-------~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlV 103 (208)
.+.++..+++|....+++.... ++. +.+...|...+.++ +-.+.-.+..+.+++..+.+.+ ++.++-+
T Consensus 111 ~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~v~~lv~~~~~~~---~~~~l~~ 186 (237)
T PF00682_consen 111 EEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA-DTVGIMTPEDVAELVRALREAL---PDIPLGF 186 (237)
T ss_dssp HHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS-S-HHHHHHHHHHHHHHS---TTSEEEE
T ss_pred HHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee-CccCCcCHHHHHHHHHHHHHhc---cCCeEEE
Confidence 3456777899999988886532 222 22334467777777 3344556677888888887764 2378999
Q ss_pred EcCCCCCc
Q psy12442 104 HCVAGLGR 111 (208)
Q Consensus 104 HC~~G~~R 111 (208)
||+.-.|=
T Consensus 187 H~Hnd~Gl 194 (237)
T PF00682_consen 187 HAHNDLGL 194 (237)
T ss_dssp EEBBTTS-
T ss_pred EecCCccc
Confidence 98875443
No 140
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=25.52 E-value=1.8e+02 Score=24.16 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=16.8
Q ss_pred CCCCcEEEEcCCCCCcHHHHHHHHHHHcCC
Q psy12442 96 DPDTCVAVHCVAGLGRAPVMVALALIELGL 125 (208)
Q Consensus 96 ~~~~~vlVHC~~G~~RSg~~~~~~l~~~~~ 125 (208)
.++.+|+|+|..|+ ++++++..|-..|+
T Consensus 267 ~~~~~iv~yC~sG~--~A~~~~~~L~~~G~ 294 (320)
T PLN02723 267 SLDSPIVASCGTGV--TACILALGLHRLGK 294 (320)
T ss_pred CCCCCEEEECCcHH--HHHHHHHHHHHcCC
Confidence 35679999998864 33434333333554
No 141
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=24.48 E-value=2.4e+02 Score=24.50 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=58.3
Q ss_pred eCceEEEeCCCCCCCH-HHHHHHHHhCCCcEEEEecCCCCC--ccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhh
Q psy12442 16 KGFKFLITDRPTDLTI-PNYILELKKHQVKNVVRVCEPTYK--VEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSV 92 (208)
Q Consensus 16 ~~~~~~~~~~p~~~~~-~~~~~~l~~~gi~~Vv~l~~~~~~--~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~ 92 (208)
..+|+...+.||+.-. .---+++++..-..-|.+.++..+ ...+...|++....|.-|..... -.+..++..+.++
T Consensus 91 ~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~-~df~~mla~L~~a 169 (396)
T COG1448 91 AEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKG-LDFDGMLADLKTA 169 (396)
T ss_pred HhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeecccccccc-ccHHHHHHHHHhC
Confidence 3567777888887533 334567788888888888887643 35678889999998877754332 3455666666554
Q ss_pred hhhCCCCcEEEEc
Q psy12442 93 FREDPDTCVAVHC 105 (208)
Q Consensus 93 l~~~~~~~vlVHC 105 (208)
..+.-||.|+
T Consensus 170 ---~~~~vvLLH~ 179 (396)
T COG1448 170 ---PEGSVVLLHG 179 (396)
T ss_pred ---CCCCEEEEec
Confidence 3567788885
No 142
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=24.19 E-value=2.7e+02 Score=24.09 Aligned_cols=83 Identities=20% Similarity=0.188 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhCC-CcEEEEecCCCCCccc----cccCCeEE--EEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEE
Q psy12442 30 TIPNYILELKKHQ-VKNVVRVCEPTYKVED----LKTEGINV--KDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVA 102 (208)
Q Consensus 30 ~~~~~~~~l~~~g-i~~Vv~l~~~~~~~~~----~~~~g~~~--~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vl 102 (208)
-++-.+..+.+++ +..+|..+...++.+. +...++.. +.+.+-+......+....++..+.+.+.+...--|+
T Consensus 18 Kmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~Vl 97 (383)
T COG0381 18 KMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVL 97 (383)
T ss_pred HHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 4555677787776 9999999998774322 22222322 111112223344566777777777777766677999
Q ss_pred EEcCCCCCcHHHHH
Q psy12442 103 VHCVAGLGRAPVMV 116 (208)
Q Consensus 103 VHC~~G~~RSg~~~ 116 (208)
||= .++.+++
T Consensus 98 VhG----DT~t~lA 107 (383)
T COG0381 98 VHG----DTNTTLA 107 (383)
T ss_pred EeC----CcchHHH
Confidence 996 4544444
No 143
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=23.69 E-value=4e+02 Score=21.65 Aligned_cols=88 Identities=14% Similarity=-0.011 Sum_probs=43.7
Q ss_pred EEEeCCCCCCCH-H-HHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCC-CCCHHHH------HHHHHHHH
Q psy12442 20 FLITDRPTDLTI-P-NYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGT-SPSPELV------DEWFEFLK 90 (208)
Q Consensus 20 ~~~~~~p~~~~~-~-~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~-~p~~~~~------~~~~~~i~ 90 (208)
|+++...++... . ...+.|.+.|....+-..+...........|+.+..++..... ......+ ...+..+.
T Consensus 4 ~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~l~ 83 (348)
T TIGR01133 4 VLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQAR 83 (348)
T ss_pred EEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHHHH
Confidence 445555554332 2 5678888888776554332222122223357888888754321 1111111 11222233
Q ss_pred hhhhhCCCCcEEEEcCCCC
Q psy12442 91 SVFREDPDTCVAVHCVAGL 109 (208)
Q Consensus 91 ~~l~~~~~~~vlVHC~~G~ 109 (208)
++++ +.+|=+|||..+.
T Consensus 84 ~~i~--~~~pDvVi~~~~~ 100 (348)
T TIGR01133 84 RILK--KFKPDAVIGFGGY 100 (348)
T ss_pred HHHH--hcCCCEEEEcCCc
Confidence 3333 3568888887653
No 144
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=23.64 E-value=98 Score=24.93 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=40.5
Q ss_pred CCceeeeeeCceEEEeCCCCCCCHHHHHHHHHhCCCcEEEEecCCCC----CccccccCCeEEEEee
Q psy12442 8 PAPAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTY----KVEDLKTEGINVKDLA 70 (208)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~gi~~Vv~l~~~~~----~~~~~~~~g~~~~~~p 70 (208)
+..++..+....++++.+|-.. +.+.+.+++++|+.||+=..-.. .-+.....|+..+-+-
T Consensus 162 ~~~~~~g~~~~~iia~~GPfs~--e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 162 TPESALGFPPKNIIAMQGPFSK--ELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred CccccCCCChhhEEEEeCCCCH--HHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 3344555678889999977754 57778899999999998765211 1133445566666553
No 145
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=23.49 E-value=2e+02 Score=23.34 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcHHHHH
Q psy12442 80 ELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMV 116 (208)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RSg~~~ 116 (208)
..|...++...+ -+.||.|||......+-.++
T Consensus 112 ~~F~~ql~lA~~-----~~lPviIH~R~A~~d~~~iL 143 (256)
T COG0084 112 EVFEAQLELAKE-----LNLPVIIHTRDAHEDTLEIL 143 (256)
T ss_pred HHHHHHHHHHHH-----cCCCEEEEccccHHHHHHHH
Confidence 344444444443 36788888877554444333
No 146
>PLN02150 terpene synthase/cyclase family protein
Probab=23.16 E-value=1e+02 Score=20.81 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHh-------------CCCCCCHHHHHHHHHHhHhh
Q psy12442 112 APVMVALALIELGLKYEDAVELIRQK-------------RRGAINSKQIAFLEKYKPKS 157 (208)
Q Consensus 112 Sg~~~~~~l~~~~~~~~~a~~~vr~~-------------R~~~~~~~q~~~l~~~~~~~ 157 (208)
.++-+-||+-++|.+.++|.+.++.. ++..+...+.+.+-++....
T Consensus 6 vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~ 64 (96)
T PLN02150 6 VANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLI 64 (96)
T ss_pred chHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 45667788888999999998776542 22233445555555555444
No 147
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=22.83 E-value=1.1e+02 Score=20.39 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHhhhhhCCCCcEEEE
Q psy12442 76 SPSPELVDEWFEFLKSVFREDPDTCVAVH 104 (208)
Q Consensus 76 ~p~~~~~~~~~~~i~~~l~~~~~~~vlVH 104 (208)
.|+.+.+++|+..-..+. ..||++|
T Consensus 61 ~Pt~EevDdfL~~y~~l~----~qPvv~H 85 (85)
T PF12091_consen 61 EPTQEEVDDFLGGYDALM----QQPVVLH 85 (85)
T ss_pred CCCHHHHHHHHHHHHHHH----hCCeecC
Confidence 477888888888776663 4688887
No 148
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=22.72 E-value=71 Score=21.57 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=13.8
Q ss_pred cEEEEcCCCCCcHHHHH
Q psy12442 100 CVAVHCVAGLGRAPVMV 116 (208)
Q Consensus 100 ~vlVHC~~G~~RSg~~~ 116 (208)
.||+-|.+|+|-|-.+-
T Consensus 3 KIL~aCG~GvgSS~~ik 19 (93)
T COG3414 3 KILAACGNGVGSSTMIK 19 (93)
T ss_pred EEEEECCCCccHHHHHH
Confidence 69999999999885433
No 149
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=22.64 E-value=4.4e+02 Score=21.70 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecC
Q psy12442 33 NYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYE 72 (208)
Q Consensus 33 ~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~ 72 (208)
+....|.+.|....+-..........+...|+.++.++..
T Consensus 20 ~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~ 59 (357)
T PRK00726 20 ALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSG 59 (357)
T ss_pred HHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEecc
Confidence 5667788888877665554322233334458888888754
No 150
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.45 E-value=4.7e+02 Score=22.01 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCcEEEEecCCC-CCc-------cccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEE
Q psy12442 33 NYILELKKHQVKNVVRVCEPT-YKV-------EDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVH 104 (208)
Q Consensus 33 ~~~~~l~~~gi~~Vv~l~~~~-~~~-------~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVH 104 (208)
..++..++.|....+++.... +++ +.....|...+.+. +-.+.-.+..+.+.+..+.+.+ ++.-++-+|
T Consensus 118 ~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~-DT~G~~~P~~v~~~v~~l~~~l--~~~i~ig~H 194 (333)
T TIGR03217 118 QHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIV-DSAGAMLPDDVRDRVRALKAVL--KPETQVGFH 194 (333)
T ss_pred HHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEc-cCCCCCCHHHHHHHHHHHHHhC--CCCceEEEE
Confidence 444555666666555554321 111 12233455555554 2244455666777777776653 234689999
Q ss_pred cCCCCCcH
Q psy12442 105 CVAGLGRA 112 (208)
Q Consensus 105 C~~G~~RS 112 (208)
|+.-.|=+
T Consensus 195 ~HnnlGla 202 (333)
T TIGR03217 195 AHHNLSLA 202 (333)
T ss_pred eCCCCchH
Confidence 98765544
No 151
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=22.45 E-value=3e+02 Score=19.68 Aligned_cols=30 Identities=23% Similarity=0.033 Sum_probs=16.3
Q ss_pred CCCCcEEEEcCC-CCCcHHHHHHHHHHHcCC
Q psy12442 96 DPDTCVAVHCVA-GLGRAPVMVALALIELGL 125 (208)
Q Consensus 96 ~~~~~vlVHC~~-G~~RSg~~~~~~l~~~~~ 125 (208)
.++.+|+|.|.. +-+..++.+...|-..|.
T Consensus 93 ~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~ 123 (138)
T cd01445 93 DLDKHLIATDGDDLGGFTACHIALAARLCGH 123 (138)
T ss_pred CCCCeEEEECCCCCcchHHHHHHHHHHHcCC
Confidence 356799999975 224444443332322554
No 152
>PRK05114 hypothetical protein; Provisional
Probab=22.13 E-value=1.1e+02 Score=18.65 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=13.4
Q ss_pred HHHHcCCCHHHHHHHHHH
Q psy12442 119 ALIELGLKYEDAVELIRQ 136 (208)
Q Consensus 119 ~l~~~~~~~~~a~~~vr~ 136 (208)
-||..|+|.-+|+..|.+
T Consensus 22 ~LMaqGmSsgEAI~~VA~ 39 (59)
T PRK05114 22 ELMAQGMSSGEAIALVAE 39 (59)
T ss_pred HHHHccccHHHHHHHHHH
Confidence 356788888888887654
No 153
>PRK13530 arsenate reductase; Provisional
Probab=22.00 E-value=2.8e+02 Score=19.74 Aligned_cols=29 Identities=3% Similarity=-0.013 Sum_probs=17.5
Q ss_pred eEEEEeecCCCCCCCHHHHHHHHHHHHhh
Q psy12442 64 INVKDLAYEDGTSPSPELVDEWFEFLKSV 92 (208)
Q Consensus 64 ~~~~~~p~~d~~~p~~~~~~~~~~~i~~~ 92 (208)
....+|+++|...-+.+.+....+.|...
T Consensus 96 ~~~~~w~i~DP~~~~~~~f~~~~~~I~~~ 124 (133)
T PRK13530 96 VKRVHWGFDDPAGKEWSEFQRVRDEIGER 124 (133)
T ss_pred ceEEECCCCCCCCCcHHHHHHHHHHHHHH
Confidence 34568888885434455666666655444
No 154
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=21.96 E-value=1.5e+02 Score=27.11 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=22.8
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQKR 138 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l~~~~~~~~~a~~~vr~~R 138 (208)
-|.||+|--.+|-|--|. +.-++.++.-+.+.+.|
T Consensus 151 iGyPVlIKAsaGGGGKGM-------Rvv~~~~e~~e~l~sar 185 (645)
T COG4770 151 IGYPVLIKASAGGGGKGM-------RVVETPEEFAEALESAR 185 (645)
T ss_pred cCCcEEEEeccCCCCCce-------EeecCHHHHHHHHHHHH
Confidence 388999999887765553 23346666666665554
No 155
>COG1438 ArgR Arginine repressor [Transcription]
Probab=21.91 E-value=3.4e+02 Score=20.14 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHhCCCcEEEEecCCC-----CCccccc-cCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEE
Q psy12442 29 LTIPNYILELKKHQVKNVVRVCEPT-----YKVEDLK-TEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVA 102 (208)
Q Consensus 29 ~~~~~~~~~l~~~gi~~Vv~l~~~~-----~~~~~~~-~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vl 102 (208)
.+-++..+.|+++|++ |+=..-+ ...-.+. ..|-.++.+|-+...++.......+.+++... ...+.-++
T Consensus 21 ~TQ~Elv~~L~~~Gi~--vTQaTvSRDlkelglvKv~~~~g~~~Y~l~~~~~~~~~~~~~~~~~~~v~~v--d~~~~~iv 96 (150)
T COG1438 21 STQEELVELLQEEGIE--VTQATVSRDLKELGLVKVRNEKGTYVYSLPAELGVPPTSKLKRYLKDLVLSI--DRNGNLIV 96 (150)
T ss_pred CCHHHHHHHHHHcCCe--EehHHHHHHHHHcCCEEecCCCCcEEEEeCCccCCCchhhHHHHHHHHheee--ccCCcEEE
Confidence 3456777888999998 3332211 1011111 22334467774444444433332233333333 34578899
Q ss_pred EEcCCCCCcHHHHHHHHHHHcCCC
Q psy12442 103 VHCVAGLGRAPVMVALALIELGLK 126 (208)
Q Consensus 103 VHC~~G~~RSg~~~~~~l~~~~~~ 126 (208)
+|-..| ++..+|.++=..+++
T Consensus 97 lkT~PG---~A~~ia~~lD~~~~~ 117 (150)
T COG1438 97 LKTSPG---AAQLIARLLDSLAKD 117 (150)
T ss_pred EEeCCc---hHHHHHHHHHhcCch
Confidence 999999 666677666444443
No 156
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=21.89 E-value=1.4e+02 Score=23.98 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=10.9
Q ss_pred CCCcEEEEcCCCCCc
Q psy12442 97 PDTCVAVHCVAGLGR 111 (208)
Q Consensus 97 ~~~~vlVHC~~G~~R 111 (208)
-+.||.|||....+.
T Consensus 126 ~~~Pv~iH~r~a~~~ 140 (258)
T PRK11449 126 YDLPVILHSRRTHDK 140 (258)
T ss_pred hCCCEEEEecCccHH
Confidence 378999999864433
No 157
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=21.75 E-value=5.9e+02 Score=22.89 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=20.9
Q ss_pred CCCCCCCH-HHHHHHHHhCCCcEEEEecCCC
Q psy12442 24 DRPTDLTI-PNYILELKKHQVKNVVRVCEPT 53 (208)
Q Consensus 24 ~~p~~~~~-~~~~~~l~~~gi~~Vv~l~~~~ 53 (208)
+.|...+. +-..+.|+++||++|+-+-...
T Consensus 3 ~~~~~~~~~~~l~~~L~~~GV~~vFg~pG~~ 33 (557)
T PRK08199 3 STPRARTGGQILVDALRANGVERVFCVPGES 33 (557)
T ss_pred cccccCcHHHHHHHHHHHcCCCEEEeCCCcc
Confidence 34444443 3456888999999999997643
No 158
>PLN02321 2-isopropylmalate synthase
Probab=21.71 E-value=6.6e+02 Score=23.42 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCcEEEEecCCCC--C-------ccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEE
Q psy12442 33 NYILELKKHQVKNVVRVCEPTY--K-------VEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAV 103 (208)
Q Consensus 33 ~~~~~l~~~gi~~Vv~l~~~~~--~-------~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlV 103 (208)
+.++..+++|...|.--++..+ + .+.+...|...+.+| +-.+.-.+..+.+.++.+.+.+....+-++-+
T Consensus 214 ~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~-DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~v 292 (632)
T PLN02321 214 DMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIP-DTVGYTLPSEFGQLIADIKANTPGIENVIIST 292 (632)
T ss_pred HHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEec-ccccCCCHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 3455667888753333333211 1 123345577777776 22444555667777777765432222356899
Q ss_pred EcCCCCCc
Q psy12442 104 HCVAGLGR 111 (208)
Q Consensus 104 HC~~G~~R 111 (208)
||+.-.|-
T Consensus 293 H~HND~Gl 300 (632)
T PLN02321 293 HCQNDLGL 300 (632)
T ss_pred EeCCCCCH
Confidence 99874433
No 159
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=21.67 E-value=1.1e+02 Score=23.84 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=16.5
Q ss_pred HHHHH-cCCCHHHHHHHHHH
Q psy12442 118 LALIE-LGLKYEDAVELIRQ 136 (208)
Q Consensus 118 ~~l~~-~~~~~~~a~~~vr~ 136 (208)
..||. +|++.++|++++|.
T Consensus 152 glLM~~~g~sE~EAy~~lR~ 171 (194)
T COG3707 152 GLLMKRRGLSEEEAYKLLRR 171 (194)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 56776 89999999999987
No 160
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=21.63 E-value=1.6e+02 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCCCcHHHHHHHHH
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVALAL 120 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~~~l 120 (208)
..|-|.|+|..|.|-|.+....-+
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlal 43 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQAL 43 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHH
Confidence 578999999999999976555444
No 161
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.53 E-value=88 Score=18.92 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=12.8
Q ss_pred HHHcCCCHHHHHHHHHH
Q psy12442 120 LIELGLKYEDAVELIRQ 136 (208)
Q Consensus 120 l~~~~~~~~~a~~~vr~ 136 (208)
||..|+|.-+|+..|.+
T Consensus 23 lMaeGmSsGEAIa~VA~ 39 (60)
T COG3140 23 LMAEGMSSGEAIALVAQ 39 (60)
T ss_pred HHHccccchhHHHHHHH
Confidence 56678888888877654
No 162
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=21.40 E-value=2.8e+02 Score=24.11 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=63.7
Q ss_pred CCHHHHHHHH---HhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCCCCHHHHHH------------HHHHHHhhh
Q psy12442 29 LTIPNYILEL---KKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDE------------WFEFLKSVF 93 (208)
Q Consensus 29 ~~~~~~~~~l---~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~p~~~~~~~------------~~~~i~~~l 93 (208)
.+++..++.+ -++|..+|.+|+.-.. .......-++- .|++=+.+|..+.+.. |...+.+..
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLStGgd-l~eiR~~ii~~--s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa 151 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLSTGGD-LHEIREWIIRN--SPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVEKQA 151 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEecccCCC-HHHHHHHHHhc--CCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHHHHH
Confidence 3555555554 5899999999987321 11111111111 2222333443333222 222222221
Q ss_pred hhCCCCcEEEEcC----------------CCCCcHHHHHHHHHHHcC-C-----CHHHHHHHHHH----------hCCCC
Q psy12442 94 REDPDTCVAVHCV----------------AGLGRAPVMVALALIELG-L-----KYEDAVELIRQ----------KRRGA 141 (208)
Q Consensus 94 ~~~~~~~vlVHC~----------------~G~~RSg~~~~~~l~~~~-~-----~~~~a~~~vr~----------~R~~~ 141 (208)
++.=.-+-|||. .=+||-|.+.++|++..+ - .+++.++.+++ .||+.
T Consensus 152 -~~GVdfmTIHaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtlSLGDglRPG~ 230 (432)
T COG0422 152 -EQGVDFMTIHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLSLGDGLRPGC 230 (432)
T ss_pred -HhCCcEEEeehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeeeeccCCCCCCc
Confidence 111245778882 236899999999998743 1 45666766664 68997
Q ss_pred C---C-HHHHHHHHHH
Q psy12442 142 I---N-SKQIAFLEKY 153 (208)
Q Consensus 142 ~---~-~~q~~~l~~~ 153 (208)
+ + ..|..-|...
T Consensus 231 i~DA~D~aQ~~EL~tl 246 (432)
T COG0422 231 IADANDEAQFAELITL 246 (432)
T ss_pred ccCCccHHHHHHHHHH
Confidence 6 2 2555555543
No 163
>PRK14738 gmk guanylate kinase; Provisional
Probab=21.16 E-value=2.7e+02 Score=21.32 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=24.4
Q ss_pred CCCCCceeeeeeCceEEEeCCCCCCCHHHHHHHHHhCC
Q psy12442 5 DIRPAPAEIEFKGFKFLITDRPTDLTIPNYILELKKHQ 42 (208)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~g 42 (208)
||-||..+-..+ .++++..+|++.-=......|.+.+
T Consensus 1 ~~~~~~~~~~~~-~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 1 MMNPWLFNKPAK-PLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCccccCCCCC-CeEEEEECcCCCCHHHHHHHHHhcC
Confidence 567887776665 5567777787765555666666554
No 164
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.12 E-value=75 Score=21.30 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=12.2
Q ss_pred cEEEEcCCCCCcHHH
Q psy12442 100 CVAVHCVAGLGRAPV 114 (208)
Q Consensus 100 ~vlVHC~~G~~RSg~ 114 (208)
.|+|-|.+|++=|-.
T Consensus 4 kILvvCgsG~~TS~m 18 (94)
T PRK10310 4 KIIVACGGAVATSTM 18 (94)
T ss_pred eEEEECCCchhHHHH
Confidence 599999999986644
No 165
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=21.12 E-value=1.4e+02 Score=27.57 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=28.5
Q ss_pred ccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcCCCCCcH
Q psy12442 58 DLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRA 112 (208)
Q Consensus 58 ~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~~G~~RS 112 (208)
.|+..|+.|+- |++.| +.+.+...++.+++ -++||+||...=+|+-
T Consensus 238 lFeelGf~YiG-PiDGH---ni~~Li~~Lk~~kd-----~~gPvllHv~T~KGKG 283 (627)
T COG1154 238 LFEELGFNYIG-PIDGH---NLEELIPTLKNAKD-----LKGPVLLHVVTKKGKG 283 (627)
T ss_pred hHHHhCCeeEC-CcCCC---CHHHHHHHHHHHhc-----CCCCEEEEEEecCCCC
Confidence 55666777753 43444 34455555555544 4789999998765554
No 166
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=20.92 E-value=2.8e+02 Score=19.50 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCCCCcHHHHHHHHHHH-cC----CCHHHHHHHHHHhCCCC
Q psy12442 106 VAGLGRAPVMVALALIE-LG----LKYEDAVELIRQKRRGA 141 (208)
Q Consensus 106 ~~G~~RSg~~~~~~l~~-~~----~~~~~a~~~vr~~R~~~ 141 (208)
..|--|||.+++..++. .| .+.+++.+.+...-.+-
T Consensus 68 ~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA~~~ 108 (121)
T TIGR01550 68 NNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVATGE 108 (121)
T ss_pred ccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHHCCC
Confidence 46889999988877765 45 35677777776654444
No 167
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=20.73 E-value=3e+02 Score=19.37 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=30.1
Q ss_pred HHcCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhHhh
Q psy12442 121 IELGLKYEDAVELIRQKRRGAINSKQIAFLEKYKPKS 157 (208)
Q Consensus 121 ~~~~~~~~~a~~~vr~~R~~~~~~~q~~~l~~~~~~~ 157 (208)
+..|++.++.++.++..-..-+...-..+|.+|....
T Consensus 51 ~~~G~~~e~i~~~L~~~S~~~lP~~v~~~i~~w~~~~ 87 (129)
T PF13625_consen 51 ASAGLTAEEIIEFLERYSKNPLPQNVEQSIEDWARRY 87 (129)
T ss_pred HHcCCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 3579999999999998776666666778888888766
No 168
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.73 E-value=91 Score=21.45 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=10.4
Q ss_pred cEEEEcCCCCCcH
Q psy12442 100 CVAVHCVAGLGRA 112 (208)
Q Consensus 100 ~vlVHC~~G~~RS 112 (208)
.||+-|.+|.+-|
T Consensus 3 kILlvCg~G~STS 15 (104)
T PRK09590 3 KALIICAAGMSSS 15 (104)
T ss_pred EEEEECCCchHHH
Confidence 5899999999433
No 169
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.68 E-value=5.2e+02 Score=21.79 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCcEEEEecCCC-CCc-------cccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEE
Q psy12442 33 NYILELKKHQVKNVVRVCEPT-YKV-------EDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVH 104 (208)
Q Consensus 33 ~~~~~l~~~gi~~Vv~l~~~~-~~~-------~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVH 104 (208)
..++..++.|....+++.... +++ ......|...+.+. +-.+.-.+..+.+.+..+.+.+ +++-++-+|
T Consensus 119 ~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~-DT~G~~~P~~v~~~v~~l~~~l--~~~i~ig~H 195 (337)
T PRK08195 119 QHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV-DSAGALLPEDVRDRVRALRAAL--KPDTQVGFH 195 (337)
T ss_pred HHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC-CCCCCCCHHHHHHHHHHHHHhc--CCCCeEEEE
Confidence 334445555555555554321 111 12233455555554 2244455667777777776653 246789999
Q ss_pred cCCCCCcH
Q psy12442 105 CVAGLGRA 112 (208)
Q Consensus 105 C~~G~~RS 112 (208)
|+.-.|=+
T Consensus 196 ~HnnlGla 203 (337)
T PRK08195 196 GHNNLGLG 203 (337)
T ss_pred eCCCcchH
Confidence 98755543
No 170
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=20.37 E-value=3.7e+02 Score=20.04 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhCCCcEEEEecCCCCCccccccCCeEEEEeecCCCCCCCHHHHHHHHHHHHhhhhhCCCCcEEEEcC
Q psy12442 29 LTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCV 106 (208)
Q Consensus 29 ~~~~~~~~~l~~~gi~~Vv~l~~~~~~~~~~~~~g~~~~~~p~~d~~~p~~~~~~~~~~~i~~~l~~~~~~~vlVHC~ 106 (208)
..-.+.+..+++.||.+||.-... +....+.... + .| .....+..+.+..+++..++. |-.|.|=..
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq~~~-~~~~~~yps~--~--~~-~~~~~~~~d~l~~~L~~A~~~-----Gmkv~~Gl~ 86 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQWTG-YGGFAFYPSK--L--SP-GGFYMPPVDLLEMILDAADKY-----GMKVFVGLY 86 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEee-cCCcccCCcc--c--cC-ccccCCcccHHHHHHHHHHHc-----CCEEEEeCC
Confidence 344567888999999999966442 2222211111 1 11 122234556777777776654 545555443
No 171
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=20.02 E-value=2.2e+02 Score=22.74 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=22.9
Q ss_pred CCCcEEEEcCCCCCcHHHHHH--HHHHHc-CCCHH
Q psy12442 97 PDTCVAVHCVAGLGRAPVMVA--LALIEL-GLKYE 128 (208)
Q Consensus 97 ~~~~vlVHC~~G~~RSg~~~~--~~l~~~-~~~~~ 128 (208)
..++++|-..+|-|=|.+++. ++++.. +.+++
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~ 46 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPE 46 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGG
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChH
Confidence 578999999999999998876 456663 35543
Done!