RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12442
(208 letters)
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 201 bits (512), Expect = 3e-66
Identities = 73/158 (46%), Positives = 101/158 (63%), Gaps = 3/158 (1%)
Query: 6 IRPAPAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGIN 65
I +IE+ FKFLI D P+ +P YI EL+++ V ++VRVC PTY E L+ GI
Sbjct: 4 IECKDRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIE 63
Query: 66 VKDLAYEDGTSPSPELVDEWFEFLKSVFRED--PDTCVAVHCVAGLGRAPVMVALALIEL 123
V D ++DG P ++D W L F + P +AVHCVAGLGRAP++VALAL+E
Sbjct: 64 VHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEY 123
Query: 124 G-LKYEDAVELIRQKRRGAINSKQIAFLEKYKPKSRLK 160
G ++ DAV +R+KR+GAIN Q+ FL+KYKP+ +
Sbjct: 124 GGMEPLDAVGFVREKRKGAINQTQLQFLKKYKPRKKAA 161
>gnl|CDD|240399 PTZ00393, PTZ00393, protein tyrosine phosphatase; Provisional.
Length = 241
Score = 148 bits (376), Expect = 7e-45
Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 10/164 (6%)
Query: 10 PAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDL 69
P +IE K LI D PT+ +P YI E+K + V ++VR CE TY ++ + GINV +L
Sbjct: 84 PTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHEL 143
Query: 70 AYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLKYED 129
+ DG +P+ ++V W + +V + + VAVHCVAGLGRAPV+ ++ LIE G+ D
Sbjct: 144 IFPDGDAPTVDIVSNWLTIVNNVIKNN--RAVAVHCVAGLGRAPVLASIVLIEFGMDPID 201
Query: 130 AVELIRQKRRGAINSKQIAFLEKYKPKSRLKLKNGQKNSCCLQK 173
A+ IR +R+GAIN +Q+ FL+ YK K + K CL+K
Sbjct: 202 AIVFIRDRRKGAINKRQLQFLKAYKKKKKKK--------NCLRK 237
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 57.5 bits (139), Expect = 1e-10
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 46 VVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHC 105
+ + Y V + +GI V L DGT P E +D+ +F++ + V VHC
Sbjct: 55 ELELLGALYNVAIEENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKK--VVVHC 112
Query: 106 VAGLGR-APVMVALALIELGL-KYEDAVELIRQKRRGAINSKQIAFLEKYKPKSRLK-LK 162
G+GR V+ A ++ GL ++A+ + R++R GA+ ++ E + R K L
Sbjct: 113 QGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPGAVVTEIQHLFELEQELFRKKELT 172
Query: 163 NGQKNSC 169
+ N
Sbjct: 173 AYESNKL 179
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 55.0 bits (133), Expect = 2e-09
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 79 PELVDEWFEFLKSVFRE---DPDTCVAVHCVAGLGRAPVMVALALIELGLKYE------D 129
PE + ++ V + + VHC AG+GR +A+ ++ L+ E
Sbjct: 146 PESPKSLLDLIRKVRKSQADPRSGPIVVHCSAGVGRTGTFIAIDILLQQLEAEGEVDVFQ 205
Query: 130 AVELIRQKRRGAINS-KQIAFL 150
V+ +R +R G + + +Q FL
Sbjct: 206 IVKELRSQRPGMVQTEEQYIFL 227
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 50.4 bits (121), Expect = 1e-08
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 79 PELVDEWFEFLKSVFRE----DPDTCVAVHCVAGLGRAPVMVALALIELGLKYE------ 128
PE D E L++V + + V VHC AG+GR VA+ ++ L+ E
Sbjct: 16 PESPDSILELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDI 75
Query: 129 -DAVELIRQKRRGAINSK-QIAFL 150
D V+ +R +R G + ++ Q FL
Sbjct: 76 FDTVKELRSQRPGMVQTEEQYLFL 99
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 50.4 bits (121), Expect = 1e-08
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 79 PELVDEWFEFLKSVFRE----DPDTCVAVHCVAGLGRAPVMVALALIELGLKYE------ 128
PE D E L++V + + V VHC AG+GR VA+ ++ L+ E
Sbjct: 16 PESPDSILELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDI 75
Query: 129 -DAVELIRQKRRGAINSK-QIAFL 150
D V+ +R +R G + ++ Q FL
Sbjct: 76 FDTVKELRSQRPGMVQTEEQYLFL 99
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 47.3 bits (113), Expect = 3e-07
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 38 LKKHQVK---NVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFR 94
L+K + NV R + + GI V+D T+ S L E EF+ +
Sbjct: 14 LEKLGITHVINVTREVPNSNLNSGILYLGIPVED---NHETNISKYL-PEAVEFIDDAIQ 69
Query: 95 EDPDTCVAVHCVAGLGR-APVMVALALIELGLKYEDAVELIRQKRRGAIN 143
+ V VHC AG+ R A +++A + L +A +++ RR I+
Sbjct: 70 KGGK--VLVHCQAGISRSATLIIAYLMKTRNLSLNEAYSFVKE-RRPIIS 116
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 45.3 bits (108), Expect = 2e-06
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 37 ELKKHQVKNVVRVCE----PTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSV 92
LKK + +V+ V + + D + + DL +D S DE +F+
Sbjct: 22 LLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQD---ISKYF-DEAVDFIDDA 77
Query: 93 FREDPDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRR 139
+ V VHC+AG+ R+ +V L++ LGL +A E ++ +R
Sbjct: 78 REKG--GKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRP 123
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 42.3 bits (100), Expect = 9e-05
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 101 VAVHCVAGLGRAPVMVALALI--ELGLKYEDAVELIRQKRRGA-INSKQIAFLEKYKPKS 157
V VHC G GR+ +++A L+ + L E+ ++ I+Q R+ A +N +Q+ LEK +
Sbjct: 178 VVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237
Query: 158 RLKLKN 163
+L +
Sbjct: 238 KLNIHK 243
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 40.7 bits (96), Expect = 9e-05
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 37 ELKKHQVK---NVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVF 93
LKK + NV P Y D G+ + D T SP E EF++
Sbjct: 21 LLKKLGITHVINVTNEV-PNYNGSDFTYLGVPIDD---NTETKISPYF-PEAVEFIEDAE 75
Query: 94 REDPDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGAIN 143
+ V VHC AG+ R+ ++ L++ + DA + ++ RR I+
Sbjct: 76 SKG--GKVLVHCQAGVSRSATLIIAYLMKTRNMSLNDAYDFVKD-RRPIIS 123
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 38.8 bits (91), Expect = 0.001
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 79 PELVDEWFEFLKSVF--REDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVEL--- 133
PE + + +++V + + VHC AG+GR +A+ ++ L+ V++
Sbjct: 173 PESPESILDLIRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEI 232
Query: 134 ---IRQKRRGAINSK-QIAFL 150
+R +R G + ++ Q FL
Sbjct: 233 VKELRSQRPGMVQTEEQYIFL 253
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 34.0 bits (78), Expect = 0.024
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 64 INVKDLAYED--GTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALI 121
++ D+A D +P V +F R P + +HC AG+ R+ A ALI
Sbjct: 60 LHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAP---LLIHCYAGISRST---AAALI 113
Query: 122 ELGLKYED 129
D
Sbjct: 114 AALALAPD 121
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 31.0 bits (71), Expect = 0.28
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 86 FEFLKSV--FREDPDTC-VAVHCVAGLGRAPVMVA----LALIELGLKY--EDAVELIRQ 136
+ L+ V ++ P + + VHC AG+GR +A L +E V+ +R
Sbjct: 151 LDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRS 210
Query: 137 KRRGAINSKQ 146
+R G + +++
Sbjct: 211 QRPGMVQTEE 220
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 31.2 bits (71), Expect = 0.39
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 62 EGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALAL 120
G +++L E+ SPE ++ +E L DP++ V G G AP V A+
Sbjct: 396 RGKGLEELTLEELQKFSPEFDEDVYEAL------DPESSVEKRDAKG-GTAPEEVLQAI 447
>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 163
Score = 30.2 bits (69), Expect = 0.40
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 89 LKSVFRE--DPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVE 132
+++ DPD V HC AG R V AL L LG+ E +
Sbjct: 112 YRALLELLADPDGPVLFHCTAGKDRTGVAAALLLSLLGVPRETIMA 157
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 29.8 bits (67), Expect = 0.79
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 29 LTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYE---DGTSPSPELVDEW 85
L I +++ KK+++ N V +++ + + Y D P +
Sbjct: 148 LIIGLRVIKQKKYELFNDNIVNVHNFELTSINGPPKKIHHFQYINWVDFNVPD---IRSL 204
Query: 86 FEFLKSVFREDPDTC-VAVHCVAGLGRAPVMVALALI 121
E + S+ T + VHC AG+GR +AL ++
Sbjct: 205 TEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDIL 241
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 30.3 bits (69), Expect = 0.80
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 116 VALALIELGLKYEDAVELIRQKRRGAINSKQIAFLE 151
V LAL + G+ E+A EL+R+K A + FLE
Sbjct: 364 VMLALRKKGMGREEAHELVREKAMKAWE-QGKEFLE 398
>gnl|CDD|206020 pfam13849, Y_phosphatase_m, Myotubularin Y_phosphatase-like. This
short region is highly conserved and seems to be common
to many myotubularin proteins with protein tyrosine
pyrophosphate activity. As the family has a number of
highly conserved residues such as histidine, cysteine,
glutamine and aspartate, it is possible that this
represents a catalytic core of the active enzymatic part
of the proteins.
Length = 55
Score = 27.5 bits (62), Expect = 0.83
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 99 TCVAVHCVAGLGRAPVMVALALIEL 123
+ V VHC G R + +LA + L
Sbjct: 1 SSVLVHCSDGWDRTSQLSSLAQLLL 25
>gnl|CDD|180276 PRK05820, deoA, thymidine phosphorylase; Reviewed.
Length = 440
Score = 29.4 bits (67), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 129 DAVELIRQKRRGAINSK-QIAFL 150
A E+IR+KR G S +I +
Sbjct: 3 LAQEIIRKKRDGGALSDEEIDWF 25
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7. Histone deacetylase 7 is a
class IIa Zn-dependent enzyme that catalyzes hydrolysis
of an N(6)-acetyl-lysine residue of a histone to yield a
deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
Histone deacetylases usually act via association with
DNA binding proteins to target specific chromatin
regions. Class IIa histone deacetylases are
signal-dependent co-repressors, having N-terminal
regulatory domain with two or three conserved serine
residues; phosphorylation of these residues is important
for ability to shuttle between the nucleus and cytoplasm
and act as transcriptional co-repressors. HDAC7 is
involved in regulation of myocyte migration and
differentiation. Known interaction partners of class IIa
HDAC7 are myocyte enhancer factors - MEF2A, -2C, and
-2D, 14-3-3 proteins, SMRT and N-CoR co-repressors,
HDAC3, ETA (endothelin receptor). This enzyme is also
involved in the development of the immune system as well
as brain and heart development. Multiple alternatively
spliced transcript variants encoding several isoforms
have been found for this gene.
Length = 378
Score = 29.2 bits (65), Expect = 1.4
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 157 SRLKLKNGQKNSC-CLQKRRGAINSKQIAFLEKY------KPKSRLKLKNGQ 201
SRL+ + G ++ C CL+ R+ ++ Q E++ P SRLKL NG+
Sbjct: 36 SRLQ-ERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGK 86
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 29.2 bits (65), Expect = 1.6
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 31/113 (27%)
Query: 54 YKVEDLKTEGIN------VKDLAYEDGTSPS-PELVDEWFEFL----------------K 90
Y V +L N +K AYED P +++ +F+ +
Sbjct: 165 YAVTNLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGE 224
Query: 91 SVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAV----ELIRQKRR 139
++ +E P + VHC AGL RA A+ I + E A+ ++R R+
Sbjct: 225 NIVKEPP---ILVHCSAGLDRAGAFCAID-ICISKYNERAIIPLLSIVRDLRK 273
>gnl|CDD|193533 cd05657, M42_glucanase_like, M42 Peptidase, Endoglucanase-like
subfamily. Peptidase M42 family, glucanase (endo-1
4-beta-glucanase or endoglucanase)-like subfamily.
Proteins in this subfamily are co-catalytic
metallopeptidases, found in archaea and bacteria. They
show similarity to cellulase and endo-1,4-beta-glucanase
(endoglucanase) which typically bind two zinc or cobalt
atoms. Some of the enzymes exhibit typical
aminopeptidase specificity, whereas others are also
capable of N-terminal deblocking activity, i.e.
hydrolyzing acylated N-terminal residues. Many of these
enzymes are assembled either as tetrahedral dodecamers
or as octahedral tetracosameric structures, with the
active site located on the inside such that substrate
sizes are limited, indicating function as possible
peptide scavengers.
Length = 336
Score = 28.6 bits (65), Expect = 2.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 44 KNV-VRVCEPTYKVEDLKTEGINVKD-LAYEDGTSPSPELVDEWFEFLKSVFREDPDTCV 101
N+ VR+ E ED++ GINV D +A++ P E+ + F+KS +D V
Sbjct: 133 DNMEVRIDEKVKSKEDVEALGINVGDFVAFD----PRTEITES--GFIKSRHLDD-KASV 185
Query: 102 AV 103
A+
Sbjct: 186 AI 187
>gnl|CDD|215960 pfam00509, Hemagglutinin, Haemagglutinin. Hemagglutinin from
influenza virus causes membrane fusion of the viral
membrane with the host membrane. Fusion occurs after the
host cell internalises the virus by endocytosis. The
drop of pH causes release of a hydrophobic fusion
peptide and a large conformational change leading to
membrane fusion.
Length = 550
Score = 28.9 bits (65), Expect = 2.3
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 149 FLEKYKPKSRLK---LKNGQKNSCCLQKRRGAINSKQ-------IAFLE--KYKPKSRLK 196
+ S + L G + C Q +G IN+ + IA E KY LK
Sbjct: 256 KISGRSHSSGIIKSDLPIGNCETKC-QTPKGGINTSKPFQNVSPIAIGECPKYVKSKSLK 314
Query: 197 LKNGQKN 203
L G +N
Sbjct: 315 LATGLRN 321
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 28.4 bits (64), Expect = 2.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 73 DGTSPSPELVDEWFEFLK 90
+G +P LV++W E LK
Sbjct: 416 EGKPANPALVEKWLERLK 433
>gnl|CDD|183362 PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional.
Length = 429
Score = 28.3 bits (63), Expect = 3.2
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 15 FKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAY 71
++G KF + P L +P YI+E +V+ +DL G+ D+ Y
Sbjct: 266 YRGLKFTLVS-PPTLEMPAYIVEQISRN-GHVIEQT------DDLA-AGLRGADVVY 313
>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 480
Score = 27.7 bits (62), Expect = 4.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 105 CVAGLGRAPVMVALALIELG 124
VAGLG + A AL+ELG
Sbjct: 20 VVAGLGVSGFAAADALLELG 39
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 27.4 bits (61), Expect = 4.5
Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 11/118 (9%)
Query: 51 EPTYKVEDLKTEGIN---VKDLAYED-GTSPSPELVDEWFEFLKSVFREDPDTCVAVHCV 106
E VE IN + +E + P+ E E L + + + V +HC
Sbjct: 85 ESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLADAENGPVLIHCT 144
Query: 107 AGLGRAPVMVALALIELGLKYEDAVEL-------IRQKRRGAINSKQIAFLEKYKPKS 157
AG R ++ AL +G E +RRG + L+ + K
Sbjct: 145 AGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKLLDDLEKKL 202
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 27.6 bits (62), Expect = 4.7
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 59 LKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHC 105
+ G V L E G + PE V+ E L D VH
Sbjct: 99 AERYGAEVVVLEVEWGEAVDPEEVE---EALDK--DPDIKAVAVVHN 140
>gnl|CDD|188234 TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1,
subtype I-B/HMARI. This domain is found in the
C-terminal 2/3 of a family of CRISPR associated
proteins of the Hmari subtype. Except for the two
sequences from halophilic archaea this domain contains
a pair of CXXC motifs [Mobile and extrachromosomal
element functions, Other].
Length = 393
Score = 27.4 bits (61), Expect = 5.4
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 23/93 (24%)
Query: 18 FKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTE----------GINVK 67
+KF TD+P Y L+K +CE YK + + G N
Sbjct: 8 YKFYTTDKPG------YSPGLEKKNAWKNYPICEDCYKDVLIGRKFIEECLDRRFGGNTY 61
Query: 68 DLAYEDGTSPSP-------ELVDEWFEFLKSVF 93
L GT E + + +EF K+ F
Sbjct: 62 KLPIIPGTIFPKVAQDLYKEEIKKIYEFRKNDF 94
>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. This group has the characteristic
catalytic and structural zinc sites of the
zinc-dependent alcohol dehydrogenases. Alcohol
dehydrogenase in the liver converts ethanol and NAD+ to
acetaldehyde and NADH, while in yeast and some other
microorganisms ADH catalyzes the conversion acetaldehyde
to ethanol in alcoholic fermentation. ADH is a member of
the medium chain alcohol dehydrogenase family (MDR),
which has a NAD(P)(H)-binding domain in a Rossmann fold
of a beta-alpha form. The NAD(H)-binding region is
comprised of 2 structurally similar halves, each of
which contacts a mononucleotide. A GxGxxG motif after
the first mononucleotide contact half allows the close
contact of the coenzyme with the ADH backbone. The
N-terminal catalytic domain has a distant homology to
GroES. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit, a
catalytic zinc at the active site and a structural zinc
in a lobe of the catalytic domain. NAD(H)-binding occurs
in the cleft between the catalytic and coenzyme-binding
domains at the active site, and coenzyme binding induces
a conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 345
Score = 26.8 bits (60), Expect = 8.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 101 VAVHCVAGLGRAPVMVALAL 120
VAVH G+G + VM+A AL
Sbjct: 169 VAVHGCGGVGLSAVMIASAL 188
>gnl|CDD|182755 PRK10816, PRK10816, DNA-binding transcriptional regulator PhoP;
Provisional.
Length = 223
Score = 26.6 bits (59), Expect = 8.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 118 LALIELGLKYEDAVELIRQKRRGAIN 143
+A+++LGL ED + LIR+ R ++
Sbjct: 47 IAIVDLGLPDEDGLSLIRRWRSNDVS 72
>gnl|CDD|203311 pfam05706, CDKN3, Cyclin-dependent kinase inhibitor 3 (CDKN3).
This family consists of cyclin-dependent kinase
inhibitor 3 or kinase associated phosphatase proteins
from several mammalian species. The cyclin-dependent
kinase (Cdk)-associated protein phosphatase (KAP) is a
human dual specificity protein phosphatase that
dephosphorylates Cdk2 on threonine 160 in a
cyclin-dependent manner.
Length = 168
Score = 26.5 bits (58), Expect = 9.4
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 37 ELKKHQVKNVVRVCE----PTYKVEDL----KTEGINVKDLAYEDGTSPSPELVDEWFEF 88
ELK ++++ C Y+V +L + GI DG +P E E
Sbjct: 66 ELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEE 125
Query: 89 LKSVFREDPDTCVAVHCVAGLGRAPVMVALALIEL 123
L + + T + HC GLGR+ ++ A L+ L
Sbjct: 126 LTTCLKNYRKTLI--HCYGGLGRSCLVAACLLLYL 158
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 26.9 bits (60), Expect = 9.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 116 VALALIELGLKYEDAVELIRQKRRGAINSKQIAFLEKYKPKSRLK 160
V +AL+E G+ E+A E++R+ GA + LE R+
Sbjct: 363 VLIALVERGMGREEAYEIVRELAMGAAEVDEPDLLEFLLADERIT 407
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,624,960
Number of extensions: 1004717
Number of successful extensions: 1060
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1048
Number of HSP's successfully gapped: 50
Length of query: 208
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 115
Effective length of database: 6,812,680
Effective search space: 783458200
Effective search space used: 783458200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)