RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12442
(208 letters)
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 177 bits (451), Expect = 5e-57
Identities = 95/164 (57%), Positives = 123/164 (75%), Gaps = 2/164 (1%)
Query: 7 RPAPAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINV 66
RPAP E+ +K +FLIT PT+ T+ +I ELKK+ V +VRVCE TY ++ EGI+V
Sbjct: 26 RPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHV 85
Query: 67 KDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLK 126
D ++DG PS ++VD+W +K FRE+P C+AVHCVAGLGRAPV+VALALIE G+K
Sbjct: 86 LDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMK 145
Query: 127 YEDAVELIRQKRRGAINSKQIAFLEKYKPKSRLKLK--NGQKNS 168
YEDAV+ IRQKRRGA NSKQ+ +LEKY+PK RL+ K NG +N+
Sbjct: 146 YEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNN 189
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 172 bits (437), Expect = 2e-55
Identities = 91/155 (58%), Positives = 117/155 (75%)
Query: 7 RPAPAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINV 66
RPAP E+ +K +FLIT PT+ T+ +I ELKK+ V +VRVCE TY ++ EGI+V
Sbjct: 5 RPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHV 64
Query: 67 KDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLK 126
D ++DG PS ++VD+W +K FRE+P C+AVHCVAGLGRAPV+VALALIE G+K
Sbjct: 65 LDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMK 124
Query: 127 YEDAVELIRQKRRGAINSKQIAFLEKYKPKSRLKL 161
YEDAV+ IRQKRRGA NSKQ+ +LEKY+PK RL+
Sbjct: 125 YEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF 159
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 164 bits (417), Expect = 3e-52
Identities = 63/154 (40%), Positives = 91/154 (59%), Gaps = 7/154 (4%)
Query: 8 PAPAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVK 67
P + F FLI D P+ +P YI EL+ V+++VRVC PTY +K+ GI+V
Sbjct: 13 CDPQKPSRVLFHFLILDAPSPSNLPTYIKELQHRGVRHLVRVCGPTYDATLVKSRGIDVH 72
Query: 68 DLAYEDGTSPSPELVDEWFEFLKSVFRED------PDTCVAVHCVAGLGRAPVMVALALI 121
++DG P+ ++D W + L + P + VHCVAGLGRAP++VALAL+
Sbjct: 73 SWPFDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRAPILVALALV 132
Query: 122 EL-GLKYEDAVELIRQKRRGAINSKQIAFLEKYK 154
E + DA+ LIR+KR+GAIN Q+ ++ KYK
Sbjct: 133 EYGNVSALDAIALIREKRKGAINQTQMHWITKYK 166
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 133 bits (336), Expect = 4e-40
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Query: 18 FKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 77
+ P +P + L V+++V + E G+ + L D P
Sbjct: 15 GRLAGLALPR---LPAHYQFLLDLGVRHLVSLTERGP-PHSDSCPGLTLHRLRIPDFCPP 70
Query: 78 SPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQ 136
+P+ +D + + + V VHC G GR M+A L++ GL DA+ IR+
Sbjct: 71 APDQIDRFVQIVDEANARGE--AVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRR 128
Query: 137 KRRGAI-NSKQIAFLEKYKPKSR 158
R G+I +Q + ++ +++
Sbjct: 129 LRPGSIETYEQEKAVFQFYQRTK 151
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 129 bits (325), Expect = 3e-38
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 17/149 (11%)
Query: 32 PNYILELKKHQVKNVVRVCEP----------TYKVEDLKTEGINVKDLAYEDGTSPSPEL 81
N ILE +K VK V+ + E Y + LK G+ + DG PS
Sbjct: 18 ENEILEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPDGGVPSDS- 76
Query: 82 VDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALI-ELGLKYEDAVELIRQKRRG 140
++ +K + E VHCV G+GR ++A LI GL+ E A++ +R R G
Sbjct: 77 --QFLTIMKWLLSEKE--GNLVHCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPG 132
Query: 141 AINSK-QIAFLEKYKPKSRLKLKNGQKNS 168
A+ + Q FL + + + LKN NS
Sbjct: 133 AVQTYEQEMFLLRVEGMRKSWLKNIYSNS 161
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 124 bits (312), Expect = 2e-34
Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 19 KFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 78
+ + + YI K H V ++R+ + Y + G + DL + DG++P+
Sbjct: 195 RARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPT 254
Query: 79 PELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQK 137
+V E+ + E+ + +AVH AGLGR ++A +++ + + + +R
Sbjct: 255 DAIVKEFLDIC-----ENAEGAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIAWVRIC 309
Query: 138 RRGAINSKQIAFLEKYKPKSRLK 160
R G++ Q FL + L+
Sbjct: 310 RPGSVIGPQQQFLVMKQTNLWLE 332
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 100 bits (251), Expect = 1e-26
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 20/170 (11%)
Query: 15 FKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEP----TYKVEDLKTE----GINV 66
G KF R + ELK ++++ C Y+V +L GI
Sbjct: 48 LPGCKFKDVRRN----VQKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIIT 103
Query: 67 KDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELG-- 124
DG +P E E L + + +H GLGR+ ++ A L+ L
Sbjct: 104 HHHPIADGGTPDIASCCEIMEELTTCLKNYR--KTLIHSYGGLGRSCLVAACLLLYLSDT 161
Query: 125 LKYEDAVELIRQKR-RGAI-NSKQIAFLEKYKPK--SRLKLKNGQKNSCC 170
+ E A++ +R R GAI KQ +L +++ K + L ++ Q S
Sbjct: 162 ISPEQAIDSLRDLRGSGAIQTIKQYNYLHEFRDKLAAHLSSRDSQSRSVS 211
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 93.1 bits (231), Expect = 3e-24
Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 3/125 (2%)
Query: 25 RPTDLTIPNYILELKKHQVKNVVRVC--EPTYKVEDLKTEGINVKDLAYEDGTSPSPELV 82
+ + + + ++ + Y G+ K + T P +V
Sbjct: 38 TSEEDVWTAEQIVKQNPSIGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQTLPPESIV 97
Query: 83 DEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGA 141
E+ + +K + P V VHC G+ R MV L+ LG+ ++A++ + R
Sbjct: 98 QEFIDTVKEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEKARGHK 157
Query: 142 INSKQ 146
I +
Sbjct: 158 IERQN 162
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 90.6 bits (224), Expect = 1e-22
Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 6/135 (4%)
Query: 24 DRPTDLTIPNYILELKKHQVKNVVRVC--EPTYKVEDLKTEGINVKDLAYED-GTSPSPE 80
+R + NY L+ K ++ +V + Y D++ EGI L + G P+ E
Sbjct: 65 NRFHPSMLSNY-LKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTE 123
Query: 81 LVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRR 139
+ + + +P + VHC G R ++ L+E + E AV Q R
Sbjct: 124 NTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARP 183
Query: 140 GAI-NSKQIAFLEKY 153
I + L +
Sbjct: 184 PGIYKGDYLKELFRR 198
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 67.4 bits (165), Expect = 1e-14
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 38 LKKHQVKNVVRVCEPTY------KVEDLKTEGINVKDLAYEDGTS-PSPELVDEWFEFLK 90
+ V+ V+ + E ++ K G+ L+ D T P+ + + +F
Sbjct: 24 VLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFAL 83
Query: 91 SVFREDPDTCVAVHCVAGLGRAPVMVALALI-ELGLKYEDAVELIRQKRRGA-INSKQIA 148
CV VHC AG R+ MVA LI E+A+E I + R I Q+
Sbjct: 84 KYQALG--QCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLE 141
Query: 149 FLEKY 153
L+++
Sbjct: 142 VLKEF 146
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 61.8 bits (149), Expect = 1e-11
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 2/110 (1%)
Query: 31 IPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLK 90
I + + L + + D V +ED P EL+ + E L
Sbjct: 44 IDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFCEDLD 103
Query: 91 SVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLKY--EDAVELIRQKR 138
ED + A+HC AG GR VM+ L+ G ++A++ + R
Sbjct: 104 QWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVR 153
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 58.8 bits (141), Expect = 1e-10
Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 21/170 (12%)
Query: 22 ITDR------PTDLTIPNY---------ILELKKHQVKNVVRVCEPTYKVEDLKTEGINV 66
+T R P D + L+ + V + +Y V
Sbjct: 27 VTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSY---RTAKFHSRV 83
Query: 67 KDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGL- 125
+ ++ +PS + + + ++P VHC+ G + ++V I L
Sbjct: 84 SECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLY 143
Query: 126 -KYEDAVELIRQKR-RGAINSKQIAFLEKYKPKSRLKLKNGQKNSCCLQK 173
AV L+ KR ++ +L K ++
Sbjct: 144 STPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKS 193
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 57.4 bits (138), Expect = 3e-10
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 9/142 (6%)
Query: 34 YILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVF 93
+ + K + V RV + + E + G+ +A D P+PE +D FL
Sbjct: 152 PLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWPTPENIDR---FLAFYR 208
Query: 94 REDPDTCVAVHCVAGLGRAPVMVALALIEL--GLKYEDAVELIRQKRRGAINSKQIAFLE 151
D + H AG+GR + + + + +D + RQ G +
Sbjct: 209 TLPQDAWLHFHSEAGVGRTTAFMVMTDMLKNPSVSLKDILY--RQHEIGGFYYGEFPIKT 266
Query: 152 KYKPKSRLKLKNGQKNSCCLQK 173
K K K K ++ +++
Sbjct: 267 --KDKDSWKTKYYREKIVMIEQ 286
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 55.6 bits (133), Expect = 2e-09
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 8/137 (5%)
Query: 9 APAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKD 68
AE+ L R L + + + K V++ + + ++ G++
Sbjct: 445 NKAEVLKDENSRLNAARGKSLIV-AELDKDKMPIDPKPVKIESVMTEQQLVEKNGLHYYR 503
Query: 69 LAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALI--ELGLK 126
+A D PS +DE F+ + + HC AG GR +A+ + +
Sbjct: 504 IAATDHIWPSAANIDE---FINFTRTMPANAWLHFHCQAGAGRTTAYMAMYDMMKNPDVS 560
Query: 127 YEDAVELIRQKRRGAIN 143
D + RQ G
Sbjct: 561 LGDILS--RQYLLGGNY 575
Score = 53.3 bits (127), Expect = 1e-08
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 34 YILELKKHQVKNVVRVCEPTYKVED--LKTEGINVKDLAYEDGTSPSPELVDEWFEFLKS 91
Y + KK+ + + V V + E+ +K G N L +D P VD++ EF KS
Sbjct: 169 YRFDDKKNVILSPVYVNYNKVRTEEEMVKQHGANYFRLTLQDHFRPDDPDVDKFLEFYKS 228
Query: 92 VFREDPDTCVAVHCVAGLGRA-PVMVALALIELGLKYEDAVELIRQKRRGAINSKQIA 148
+ D + HC AG+GR MV +++ + RQK G ++ +I
Sbjct: 229 L---PKDAWLHYHCYAGMGRTTIFMVMHDILKNAKDVSFDDIIQRQKLIGIVDLSEIP 283
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 53.1 bits (126), Expect = 1e-08
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 38 LKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDP 97
K + + D +V + +D P+ + ++ + K DP
Sbjct: 59 FKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDP 118
Query: 98 DTCVAVHCVAGLGRAPVMVALALIELGL--KYEDAVELIRQKR 138
D +A+H G GR +V+ L+E G ++A+E +R
Sbjct: 119 DHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRR 161
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 51.1 bits (123), Expect = 1e-08
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 37 ELKKHQVKNVVRVC-EPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFRE 95
+L ++++ +++ + P ++D+ I V D E F+
Sbjct: 28 QLGRNKITHIISIHESPQPLLQDITYLRIPVADTPEVPIKK----HFKECINFIHCCRLN 83
Query: 96 DPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRRGA-INS---KQIAFL 150
VH AG+ R+ ++ A + GL + D +E I+ R A N +Q+
Sbjct: 84 G--GNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRPIANPNPGFRQQLEEF 141
Query: 151 EK-YKPKSRLKLK 162
K R +L+
Sbjct: 142 GWASSQKLRRQLE 154
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 50.9 bits (122), Expect = 3e-08
Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 18/139 (12%)
Query: 37 ELKKHQVKNVVRVC---------EPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFE 87
+L + + +VV Y+ L+ GI D + D +
Sbjct: 66 KLIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNPFFDLSV----YFLPVAR 121
Query: 88 FLKSVFREDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRRGAINS-- 144
++++ P V VHC G+ R+ +++A +I + +A++ ++ R NS
Sbjct: 122 YIRAA-LSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNICPNSGF 180
Query: 145 -KQIAFLEKYKPKSRLKLK 162
+Q+ L+ + +
Sbjct: 181 LRQLQVLDNRLGRETGRFA 199
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 49.5 bits (119), Expect = 3e-08
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 37 ELKKHQVK---NVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVF 93
LKK++V NV E + D + I++ DL + S E FEF++
Sbjct: 24 TLKKNKVTHILNVAYGVENAFL-SDFTYKSISILDLPETNILS----YFPECFEFIEEAK 78
Query: 94 REDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRR 139
R+D V VH AG+ RA +++ + + A L++ R
Sbjct: 79 RKD--GVVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNARP 123
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 49.9 bits (120), Expect = 4e-08
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 13/134 (9%)
Query: 37 ELKKHQVKNVVRVC-EPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFRE 95
+L K++V +++ V +E +K I D ++ T E +F+
Sbjct: 27 QLSKNKVTHILSVHDSARPMLEGVKYLCIPAADSPSQNLTR----HFKESIKFIHECRLR 82
Query: 96 DPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRRGA-INS---KQ-IAF 149
VHC+AG+ R+ +++A + +EDA+ +R R A N +Q F
Sbjct: 83 G--ESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSCANPNVGFQRQLQEF 140
Query: 150 LEKYKPKSRLKLKN 163
+ + R LK
Sbjct: 141 EKHEVHQYRQWLKE 154
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo sapiens}
Length = 151
Score = 48.4 bits (116), Expect = 1e-07
Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 23/141 (16%)
Query: 37 ELKKHQVKNVV-------RVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFL 89
EL++ + +V+ R Y+ ++ G+ D D + +F+
Sbjct: 22 ELRRLGITHVLNASHSRWRGTPEAYEGLGIRYLGVEAHDSPAFDMSI----HFQTAADFI 77
Query: 90 KSVFREDPDTCVAVHCVAGLGRAPVMV-ALALIELGLKYEDAVELIRQKRRGAINS---K 145
P + VHC G+ R+ +V A ++ L +A++ ++ R N +
Sbjct: 78 HRA-LSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRGIIPNRGFLR 136
Query: 146 QIAFLEKYKPKSRLKLKNGQK 166
Q+ L++ +L+ G +
Sbjct: 137 QLLALDR-------RLRQGLE 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 1e-07
Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 45/151 (29%)
Query: 17 GFKFL--ITDRPTDLTIP-----------NYILELKKHQVKNVVRVCEPTYKVEDLKTEG 63
GF L + + P +LTI NY + + + E +K + +
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYS-AMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 64 INVKDLAYEDG-------TSPSPELVDEW--FEFLKSVFREDPDTCVAVHCVAG--LG-- 110
+ E G T P+ L+ E FE LKS D A G LG
Sbjct: 1717 YTFRS---EKGLLSATQFTQPALTLM-EKAAFEDLKSKGLIPADATFA-----GHSLGEY 1767
Query: 111 RAPVMVALALIELG-LKYEDAVELIRQKRRG 140
A + +LA + E VE++ RG
Sbjct: 1768 AA--LASLA----DVMSIESLVEVVFY--RG 1790
Score = 38.5 bits (89), Expect = 0.001
Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 58/190 (30%)
Query: 7 RP---APAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEG 63
RP + +E L+ PT +L++ K + EPT
Sbjct: 7 RPLTLSHGSLEHV---LLV---PTASFF--IASQLQEQFNKILP---EPT---------- 45
Query: 64 INVKDLAYEDGTSPSPELV----------------DEWFEFLKSVFREDPDTCVA---VH 104
+ A +D + ELV ++ + L E + + +H
Sbjct: 46 ---EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 105 CVA----GLGRAPVMVALALIELGLKYEDAVELIRQKRRGAINSKQIAFLEKYK-PKSRL 159
+A ++ LI+ Y A + ++ NS A ++L
Sbjct: 103 ALAAKLLQENDTTLVKTKELIK---NYITARIMAKRPFDKKSNS---ALFRAVGEGNAQL 156
Query: 160 KLK-NGQKNS 168
GQ N+
Sbjct: 157 VAIFGGQGNT 166
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 48.4 bits (116), Expect = 2e-07
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 37 ELKKHQVKNVVRVCE--PTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFR 94
L + + V V P + + + V D ED + ++ +++ R
Sbjct: 32 LLVRAGITLCVNVSRQQPGPRAPGVAELRVPVFDDPAEDLLT----HLEPTCAAMEAAVR 87
Query: 95 EDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRR 139
+ V+C G R+ V A + G + A ++++ R
Sbjct: 88 DG--GSCLVYCKNGRSRSAAVCTAYLMRHRGHSLDRAFQMVKSARP 131
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 47.2 bits (113), Expect = 3e-07
Identities = 17/139 (12%), Positives = 48/139 (34%), Gaps = 18/139 (12%)
Query: 37 ELKKHQVKNVVRVCE--PTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFR 94
+ + + +++ V P+ + +++ + +F+ +
Sbjct: 30 YIHNNNISSILLVGIEVPSLFKDQCDILRLDIVSEEGHQLYD----SIPNAIKFIIRSIQ 85
Query: 95 EDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRRGA-INS---KQIAF 149
V + G+ +AP +++A + L + +A ++ I S Q+
Sbjct: 86 RK--EGVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNKVQGLYPLIDIESGFILQLKL 143
Query: 150 LEKYKPKSRLKLKNGQKNS 168
EK +L+ N + +
Sbjct: 144 FEK-----KLEKMNSEGHH 157
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 46.8 bits (112), Expect = 4e-07
Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 37 ELKKHQVK---NVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVF 93
+L+ V+ NV R + + + I V D D + ++ ++F+
Sbjct: 24 DLQNRGVRYILNVTREIDNFFP-GVFEYHNIRVYDEEATDLLA----YWNDTYKFISKAK 78
Query: 94 REDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRR 139
+ + VH G+ R+ ++A A+ E G + A + ++++R
Sbjct: 79 KHG--SKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRT 123
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 47.0 bits (111), Expect = 4e-07
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 3/123 (2%)
Query: 38 LKKHQVKNVVRVCEPTYKVED---LKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFR 94
L+ +++++ +C Y + LK+ GI + E P + D V
Sbjct: 29 LQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLL 88
Query: 95 EDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQKRRGAINSKQIAFLEKYK 154
++ + V +HC G R +V + ++ F+E +
Sbjct: 89 DEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAAKARVSDQRFMEIFD 148
Query: 155 PKS 157
S
Sbjct: 149 VSS 151
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 46.4 bits (111), Expect = 5e-07
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 37 ELKKHQVK---NVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEW---FEFLK 90
L + NV C ++ + + I V+D D + + E++
Sbjct: 24 MLDALGITALLNVSSDCPNHFE-GHYQYKCIPVEDNHKAD-------ISSWFMEAIEYID 75
Query: 91 SVFREDPDTCVAVHCVAGLGRAPVMV-ALALIELGLKYEDAVELIRQKRR 139
+V V VH AG+ R+ + A +++ ++ E+A E ++Q+R
Sbjct: 76 AVKDCR--GRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRS 123
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 47.5 bits (112), Expect = 7e-07
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 41 HQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTC 100
+ ++ + K D++ ++D D P +V L +
Sbjct: 54 YFGVDISSIQAYAKKYSDIQHIRCEIRDFDAFDLRMRLPAVVG----TLYKAVKR-NGGV 108
Query: 101 VAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGAINSKQI 147
VH AG+GRAP + + G K +A +L+ KR I
Sbjct: 109 TYVHSTAGMGRAPAVALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAI 156
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 46.7 bits (111), Expect = 1e-06
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 37 ELKKHQVK---NVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVF 93
L + NV R L + I V+D D +S E +F+ V
Sbjct: 26 FLANLHITALLNVSRRTSEACM-THLHYKWIPVEDSHTADISS----HFQEAIDFIDCVR 80
Query: 94 REDPDTCVAVHCVAGLGRAPVMV-ALALIELGLKYEDAVELIRQKRR 139
+ V VH AG+ R+P + A + + ++A + I+Q+R
Sbjct: 81 EKG--GKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRS 125
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 46.2 bits (110), Expect = 1e-06
Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 37 ELKKHQVKNVVRVCE--PTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFR 94
L+ + +V P + + + + D+ + D + + SV R
Sbjct: 46 LLQARGITCIVNATIEIPNFNWPQFEYVKVPLADMPHAPIGL----YFDTVADKIHSVSR 101
Query: 95 EDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRR 139
+ VHC AG+ R+ + +A + + +A ++ +R
Sbjct: 102 KH--GATLVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARRP 145
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase,
structural genomics, PSI-2, protein structure
initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Length = 155
Score = 45.6 bits (109), Expect = 1e-06
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 37 ELKKHQVKNVVRVCEPT----YKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSV 92
L K ++ ++ V K D + I + D ++ S E EF+
Sbjct: 26 SLAKLGIRYILNVTPNLPNFFEKNGDFHYKQIPISDHWSQN---LSRFF-PEAIEFIDEA 81
Query: 93 FREDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRR 139
++ V VH +AG+ R+ V VA + +L L DA +L+++K+
Sbjct: 82 LSQN--CGVLVHSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKS 127
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 46.2 bits (110), Expect = 1e-06
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 11/107 (10%)
Query: 37 ELKKHQVK---NVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVF 93
L +Q+ NV T ED++ + V D D + + SV
Sbjct: 40 MLSSNQITMVINVSVEVVNTLY-EDIQYMQVPVADSPNSRLCD----FFDPIADHIHSVE 94
Query: 94 REDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRR 139
+ +HC AG+ R+ + +A + + DA + R
Sbjct: 95 MKQ--GRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRP 139
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 45.3 bits (108), Expect = 1e-06
Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 37 ELKKHQVKNVVRVCEPT----YKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSV 92
+++ + V+ V Y+ + + D ++ +E FEF++
Sbjct: 24 TMQRLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQ----YFEEAFEFIEEA 79
Query: 93 FREDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRR 139
+ + +HC AG+ R+ +++A + + DA + ++ KR
Sbjct: 80 HQCG--KGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP 125
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 45.8 bits (109), Expect = 2e-06
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 21/139 (15%)
Query: 38 LKKHQVKNVVRVCE-----------PTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWF 86
L+K + +V+ E YK + GI D + ++ +
Sbjct: 49 LQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSA----YFERAA 104
Query: 87 EFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE-LGLKYEDAVELIRQKRRGAINS- 144
+F+ + V VHC G R+P +V L+ + + A+ ++RQ R N
Sbjct: 105 DFIDQA-LAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIGPNDG 163
Query: 145 --KQ-IAFLEKYKPKSRLK 160
Q ++ + +LK
Sbjct: 164 FLAQLCQLNDRLAKEGKLK 182
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 45.4 bits (108), Expect = 2e-06
Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 37 ELKKHQVKNVVRVCEPT----YKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSV 92
+++ + V+ V Y+ + + D ++ +E FEF++
Sbjct: 28 TMQRLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQ----YFEEAFEFIEEA 83
Query: 93 FREDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRR 139
+ + +HC AG+ R+ +++A + + DA + ++ KR
Sbjct: 84 HQCG--KGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP 129
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 42.6 bits (101), Expect = 1e-05
Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 14/113 (12%)
Query: 35 ILELKKHQVK---NVVRVCEPTYKV----EDLKTEGINVKDLAYEDGTSPSPELVDEWFE 87
+ L+KH + + + E + + + +++ D E+ E
Sbjct: 26 LPVLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADNPVENIIR----FFPMTKE 81
Query: 88 FLKSVFREDPDTCVAVHCVAGLGRAP-VMVALALIELGLKYEDAVELIRQKRR 139
F+ + V VH AG+ R+ ++A + G+KY DA ++++R
Sbjct: 82 FIDGSLQMG--GKVLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERRF 132
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 42.8 bits (101), Expect = 1e-05
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 14/112 (12%)
Query: 36 LELKKHQVKNVVRVC--EPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVF 93
+ + K V+ + + T ++ I + D D + D+ FL
Sbjct: 50 APSSEVKFKYVLNLTMDKYTLPNSNINIIHIPLVDDTTTDISK----YFDDVTAFLSKCD 105
Query: 94 REDPDTCVAVHCVAGLGRAP------VMVALALIELGLKYEDAVELIRQKRR 139
+ + V VH AG+ R+ +M L + +R R
Sbjct: 106 QRN--EPVLVHSAAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMRDLRG 155
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 42.6 bits (100), Expect = 1e-05
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 12/124 (9%)
Query: 37 ELKKHQVKNVVRVC----EPTYKVED--LKTEGINVKDLAYEDGTSPSPELVDEWFEFLK 90
LK+ V V+ + + + E + G++ + D +P E V+ +F +
Sbjct: 35 LLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPV-DWQNPKVEDVEAFFAAM- 92
Query: 91 SVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQKRRGAINSKQIAFL 150
+ V VHC+A RA L ++ G A + AI K A L
Sbjct: 93 ---DQHKGKDVLVHCLAN-YRASAFAYLYQLKQGQNPNMAQTMTPWNDELAIYPKWQALL 148
Query: 151 EKYK 154
+
Sbjct: 149 TEVS 152
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Length = 219
Score = 42.8 bits (101), Expect = 2e-05
Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 37 ELKKHQVKNVVRVCEPT---------YKVEDLKTEGINVKDLAYEDGTSPSPELVDEWF- 86
L+K +V+ Y+ D++ G+ DL D + +F
Sbjct: 74 RLQKAGFTHVLNAAHGRWNVDTGPDYYRDMDIQYHGVEADDLPTFD--------LSVFFY 125
Query: 87 ---EFLKSVFREDPDTCVAVHCVAGLGRAPVMV-ALALIELGLKYEDAVELIRQKRRGAI 142
F+ + + + VHCV G R+ +V A +I + DA++ + + R
Sbjct: 126 PAAAFIDRALSD-DHSKILVHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNRCVLP 184
Query: 143 NS---KQIAFLEK--YKPKSRLKLKNGQKNS 168
N KQ+ L+K + + R + ++G++
Sbjct: 185 NRGFLKQLRELDKQLVQQRRRSQRQDGEEED 215
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 42.0 bits (99), Expect = 3e-05
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 25/141 (17%)
Query: 36 LELKKHQVKNVVRVC--EPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVF 93
+ + K V+ + + T ++ I + D D + D+ FL
Sbjct: 67 APSSEVKFKYVLNLTMDKYTLPNSNINIIHIPLVDDTTTDISK----YFDDVTAFLSKCD 122
Query: 94 REDPDTCVAVHCVAGLGRAP------VMVALALIELGLKYEDAVELIRQKRRGA-INS-- 144
+ + V VHC AG+ R+ +M L + +R R N
Sbjct: 123 QRN--EPVLVHCAAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMRDLRGAFVENPSF 180
Query: 145 -KQIAFLEKYKPKSRLKLKNG 164
+QI +EKY + KNG
Sbjct: 181 KRQI--IEKY-----VIDKNG 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 8e-05
Identities = 34/239 (14%), Positives = 61/239 (25%), Gaps = 65/239 (27%)
Query: 4 KDIRPAPAEI----EFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVR-----VCEPTY 54
KD++ P I E I ++ + + + +V+ V Y
Sbjct: 36 KDVQDMPKSILSKEEIDH----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 55 K--VEDLKTEG----------INVKDLAYEDGTS------PSPELVDEWFEFLKSVFRE- 95
K + +KTE I +D Y D + + L+ E
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK----LRQALLEL 147
Query: 96 DPDTCVAVHCVAGLGRAPVMVALAL---------------IELGLKYEDAVELIRQKRRG 140
P V + V G G+ + + L L ++
Sbjct: 148 RPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 141 AINSKQIAFLEKYKPKSRLKLKNGQKNSCCLQKRRGAINSKQIAFLEKYKPKSRLKLKN 199
+ +L++ + Q + RR K L L N
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQA-----ELRR--------LLKSKPYENCLLVLLN 252
Score = 31.7 bits (71), Expect = 0.18
Identities = 40/242 (16%), Positives = 65/242 (26%), Gaps = 83/242 (34%)
Query: 10 PAEIE--FKGFK-FLITDRPTDLTIPNYILEL-----KKHQVKNVV-----------RVC 50
PAE F F P IP +L L K V VV +
Sbjct: 368 PAEYRKMFDRLSVF-----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 51 EPTYKVEDL----KTEGINVKDL------AYE-----DGTSPSPELVDE-WFEFLKSVFR 94
E T + + K + N L Y D P +D+ ++ +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----- 477
Query: 95 EDPDTCVAVHCVAGLGRAPVMVALALIELGLKYEDAVELIRQK-RRGAINSKQIAF---- 149
H + + M ++ L ++ + QK R +
Sbjct: 478 -------GHH-LKNIEHPERMTLFRMVFLDFRF------LEQKIRHDSTAWNASGSILNT 523
Query: 150 ---LEKYKPKSRLKLKNGQKNSCCLQKRRGAINSKQIAFLEKYKPKSRLKLKNGQKNSCC 206
L+ YK N ++ AI + FL K + K +
Sbjct: 524 LQQLKFYK-------PYICDNDPKYERLVNAI----LDFLPKIEENLIC-----SKYTDL 567
Query: 207 LQ 208
L+
Sbjct: 568 LR 569
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 39.0 bits (91), Expect = 4e-04
Identities = 13/103 (12%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 38 LKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDP 97
+ V+ V E + + + +E + + +L + + +
Sbjct: 61 KELLPFDVVINVAEEANDLRM-QVPAVEYHHYRWEHDSQIALDL-PSLTSIIHAATTKR- 117
Query: 98 DTCVAVHCVAGLGR-APVMVALALIELGLKYEDAVELIRQKRR 139
+ +H GL R A +++A + L + +L++ +
Sbjct: 118 -EKILIHAQCGLSRSATLIIAYIMKYHNLSLRHSYDLLKSRAD 159
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 39.3 bits (92), Expect = 5e-04
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 79 PELVDEWFEFLKSV---FREDPDTCVAVHCVAGLGRAPVMVAL-ALIELGLKYED----- 129
P + + +V ++ + + VHC AG GR +AL ++E +K E
Sbjct: 496 PAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILER-VKAEGLLDVF 554
Query: 130 -AVELIRQKRRGAINSK-QIAFL 150
AV+ +R +R + + Q F
Sbjct: 555 QAVKSLRLQRPHMVQTLEQYEFC 577
Score = 28.9 bits (65), Expect = 1.3
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 87 EFLKSV-FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIRQK 137
+FLK V + VHC AG+GR + + A++ + + E V IR +
Sbjct: 210 KFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDAMMAM-MHAEQKVDVFEFVSRIRNQ 268
Query: 138 RRGAI-NSKQIAFL 150
R + Q F+
Sbjct: 269 RPQMVQTDMQYTFI 282
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 36.6 bits (85), Expect = 0.005
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 26/131 (19%)
Query: 42 QVKNVVRVCEPTY-----KVEDLKT-EGINVKDLAY----EDGTSPSPELVDEWFEFLKS 91
V + P Y KV D + + ++ + E G + E +F+
Sbjct: 433 VVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGF---IDFIGQ 489
Query: 92 V---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYED------AVELIRQKRRG 140
V + + VHC AG+GR V + L ++E ++YE V+ +R +R
Sbjct: 490 VHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLER-MRYEGVVDMFQTVKTLRTQRPA 548
Query: 141 AINSK-QIAFL 150
+ ++ Q
Sbjct: 549 MVQTEDQYQLC 559
Score = 28.5 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 87 EFLKSV-FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIRQK 137
FL+ V D + VHC AG+GR + + A++E +K+E V +R +
Sbjct: 196 AFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLER-MKHEKTVDIYGHVTCMRSQ 254
Query: 138 RRGAINSKQ 146
R + ++
Sbjct: 255 RNYMVQTED 263
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 35.9 bits (83), Expect = 0.007
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 86 FEFLKSV--FREDPDTCVAVHCVAGLGRAPVMVAL-ALIELGLKYED------AVELIRQ 136
FE + + D VH G A ++ AL L + L+ E+ ++I
Sbjct: 505 FELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQ-LENENAVDVFQVAKMINL 563
Query: 137 KRRGAINSK-QIAFL 150
R G Q F+
Sbjct: 564 MRPGVFTDIEQYQFI 578
Score = 28.5 bits (64), Expect = 1.6
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 87 EFLKSV-FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIRQK 137
F++ P+T V VHC AG+GR + + ++++ +K + ++ IR +
Sbjct: 215 TFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQ-IKDKSTVNVLGFLKHIRTQ 273
Query: 138 RRGAINSKQ 146
R + +++
Sbjct: 274 RNYLVQTEE 282
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 33.9 bits (78), Expect = 0.026
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 103 VHCVAGLGRAPVMVAL-ALIELGLKYED------AVELIRQKRRGAINSK-QIAFL 150
+HC G + + AL L+E + E+ V+ +R+ R G +++ Q FL
Sbjct: 544 IHCRDGSQQTGIFCALLNLLES-AETEEVVDIFQVVKALRKARLGMVSTFEQYQFL 598
Score = 27.8 bits (62), Expect = 3.0
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 87 EFLKSV-FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIRQK 137
+ + V + + + VH AG+GR + + A++E L+ E+ V +R++
Sbjct: 210 KLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEG-LEAENKVDVYGYVVKLRRQ 268
Query: 138 RRGAI-NSKQIAFL 150
R + Q +
Sbjct: 269 RCLMVQVEAQYILI 282
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase,
CDC25 phosphatase, rhodanese, C-MYC epitope,
oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Length = 152
Score = 32.3 bits (73), Expect = 0.046
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 64 INVKDLAYEDGT------SPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVM-- 115
I+ +D + G P+ +E +E L E+ HC L RAP
Sbjct: 28 IDCRDSDRDCGFIVNSINMPTISCTEEMYEKLAKTLFEEKKELAVFHCAQSLVRAPKGAN 87
Query: 116 -VALALIELGLKYEDAVEL 133
ALA +LG L
Sbjct: 88 RFALAQKKLGYVLPAVYVL 106
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 32.3 bits (74), Expect = 0.080
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 87 EFLKSVFREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDAVEL--------IRQ 136
E L + + T + VHC AG+GR ++ A + ++ + ++Q
Sbjct: 211 ELLSVI-KNCVTTSPILVHCSAGIGRTGTLIGAYAALLH-IERGILTDSTVYSIVAAMKQ 268
Query: 137 KRRGAI 142
KR G +
Sbjct: 269 KRFGMV 274
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 29.6 bits (67), Expect = 0.24
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 31 IPNYILELKK----HQVKNVVRVCEPTYKVEDLK 60
+YILE+++ + K + Y V++L+
Sbjct: 39 GISYILEMEEETSGYGFKPKYDGEDLAYTVKNLR 72
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 30.3 bits (69), Expect = 0.38
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 79 PELVDEWFEFLKSVFREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYE------DA 130
P D+ F+ + R + + HC AG+GR+ ++ + ++ L + + D
Sbjct: 220 PSQPDDLLTFISYM-RHIHRSGPIITHCSAGIGRSGTLICIDVVLGL-ISQDLDFDISDL 277
Query: 131 VELIRQKRRGAI 142
V +R +R G +
Sbjct: 278 VRCMRLQRHGMV 289
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 30.2 bits (69), Expect = 0.40
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 87 EFLKSV---FREDPDTCVAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIRQ 136
+ +V ++ + + VHC AG GR AL ++E +K E V+ +R
Sbjct: 162 NIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLER-VKAEGILDVFQTVKSLRL 220
Query: 137 KRRGAI 142
+R +
Sbjct: 221 QRPHMV 226
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC,
hydrolase; 1.54A {Homo sapiens}
Length = 287
Score = 29.9 bits (68), Expect = 0.44
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 87 EFLKSVFREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYE------DAVELIRQKR 138
EF+ V D+ V VHC AG+GR V+V + + L + D V +R +R
Sbjct: 197 EFVNYVRSLRVDSEPVLVHCSAGIGRTGVLVTMETAMCL-TERNLPIYPLDIVRKMRDQR 255
Query: 139 RGAI 142
+
Sbjct: 256 AMMV 259
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A
{Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Length = 382
Score = 29.8 bits (68), Expect = 0.54
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 77 PSPELVDEWFEFLKSVFREDPD------TCVAVHCVAGLGRAPV 114
P + + ++ R + D TCV + GLG P
Sbjct: 193 PDASVAGLMVKEIEKY-RGNKDSIGGVVTCVVRNLPTGLG-EPC 234
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta
tetrameric PROT protein structure initiative; 2.80A
{Campylobacter jejuni} SCOP: d.258.1.1
Length = 370
Score = 29.4 bits (67), Expect = 0.74
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 8/45 (17%)
Query: 76 SPSPELVDEWFEFLKSVFREDPD------TCVAVHCVAGLGRAPV 114
P+L ++ + + R D + GLG +
Sbjct: 180 CLDPKLESDFKNEILNA-RNSKDSVGAAVFTKVSGMLIGLG-EVL 222
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.1
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 20/41 (48%)
Query: 39 KKHQVKNVVRVCEPTYKVED-LKTEGINVKDLAYEDGTSPS 78
+K +K K++ LK Y D ++P+
Sbjct: 18 EKQALK----------KLQASLKL---------YADDSAPA 39
Score = 26.1 bits (56), Expect = 6.1
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 165 QKNSCCLQKRRGAINSKQIAFLEKYKPKS--RLKLK 198
+K + L+K + + L+ Y S L +K
Sbjct: 18 EKQA--LKKLQAS--------LKLYADDSAPALAIK 43
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 28.7 bits (65), Expect = 1.3
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 77 PSPELVDEWFEFLKSV--FREDPDTCVAVHCVAGLGRAPVMVAL-ALIELGLKYEDA--- 130
P+ + +F+ V + +HC AG+GR +AL L++ ++ +
Sbjct: 193 PTANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQH-IRDHEFVDI 251
Query: 131 ---VELIRQKRRGAI-NSKQIAFL 150
V +R R + +Q F+
Sbjct: 252 LGLVSEMRSYRMSMVQTEEQYIFI 275
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 28.7 bits (65), Expect = 1.4
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 9/45 (20%)
Query: 63 GINVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPD-TCVA-VHC 105
GI + P + +D + DP + +A VH
Sbjct: 103 GIAHHAYDCGEVARPDVQAIDA-------ILNADPTISHIAMVHS 140
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 28.4 bits (64), Expect = 1.5
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 87 EFLKSV---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIR 135
+ + V V VHC AG+GR +A + LK E V +R
Sbjct: 207 QLMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIATSIGCQQ-LKEEGVVDALSIVCQLR 265
Query: 136 QKRRGAI-NSKQIAFL 150
R G + S+Q F+
Sbjct: 266 VDRGGMVQTSEQYEFV 281
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 28.4 bits (64), Expect = 1.5
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 103 VHCVAGLGRAPVMVAL-ALIELGLKYE------DAVELIRQKRRGAI 142
VHC AG+GR +L + L+ V +R +R +I
Sbjct: 238 VHCSAGIGRTGTFCSLDICLAQ-LEELGTLNVFQTVSRMRTQRAFSI 283
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 28.4 bits (64), Expect = 1.7
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 87 EFLKSV-FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYE------DAVELIRQK 137
F+++ R + + VHC AG+GR+ + L +++ + V +R++
Sbjct: 222 RFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDRILQQ-INTSDYVDIFGIVYAMRKE 280
Query: 138 RRGAI-NSKQIAFL 150
R + +Q +
Sbjct: 281 RVWMVQTEQQYICI 294
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase,
complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella
pneumoniae subsp} PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Length = 258
Score = 28.2 bits (62), Expect = 1.8
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 41 HQVKNVVRVCEPTY-KVEDLKTEGINVKDLAYEDGTSPSPELVDEWFEFLKSV 92
+ + D +T V+ + DG+ ++ W ++V
Sbjct: 52 YYQTTIPLKDAAIMANCPDAQTRRKWVQRILDHDGSHGEDGGIEAWLRLGEAV 104
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 28.3 bits (63), Expect = 1.9
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 80 ELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIELGLKY--EDAVELIRQK 137
+ V + +HC+ G+GR M A +++ E R
Sbjct: 296 DRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRDS 355
Query: 138 RRG 140
R
Sbjct: 356 RNN 358
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 28.1 bits (63), Expect = 2.2
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 87 EFLKSV---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIR 135
+ V + VHC AG+GR +A + LK V +R
Sbjct: 218 RLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQ-LKARGEVDILGIVCQLR 276
Query: 136 QKRRGAI 142
R G I
Sbjct: 277 LDRGGMI 283
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 28.0 bits (63), Expect = 2.3
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 87 EFLKSVFRE--DPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIRQ 136
+F + V + +C + VHC G GR + + ++ K +E +R
Sbjct: 211 DFRRKV-NKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGVKEIDIAATLEHVRD 269
Query: 137 KRRGAI 142
+R G +
Sbjct: 270 QRPGLV 275
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: NAD EPE; 2.12A {Shewanella
denitrificans}
Length = 375
Score = 28.1 bits (63), Expect = 2.5
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 31 IPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYE--DGTSPSP--ELVDEWF 86
+ + + + VV + + ++ + L + K P VDE
Sbjct: 41 LDTVLEQERTDANDFVVFLVDDVHQHKPL-AARVPNKAHDLVIYVNVDDEPTTVQVDELT 99
Query: 87 EFLKSVFREDPDTCVAV 103
+K+ + P + V +
Sbjct: 100 AQVKAFNTKLPVSVVGL 116
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 27.9 bits (63), Expect = 2.5
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 87 EFLKSV-FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIRQK 137
F++ V F P+ + VHC AG GR +A+ ++++ + E V +R +
Sbjct: 199 GFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFIAIDTMLDM-AENEGVVDIFNCVRELRAQ 257
Query: 138 RRGAI-NSKQIAFL 150
R + +Q F+
Sbjct: 258 RVNLVQTEEQYVFV 271
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 27.7 bits (62), Expect = 2.6
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 87 EFLKSV---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIR 135
F V ++ P + VHC AG+GR +A+ LI ++ E+ V +R
Sbjct: 222 NFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIAIDRLIYQ-IENENTVDVYGIVYDLR 280
Query: 136 QKRRGAI 142
R +
Sbjct: 281 MHRPLMV 287
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 27.6 bits (62), Expect = 2.9
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 87 EFLKSV-FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIRQK 137
F++ P+T V VHC AG+GR + + ++++ +K + ++ IR +
Sbjct: 233 TFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQ-IKDKSTVNVLGFLKHIRTQ 291
Query: 138 RRGAI-NSKQIAFL 150
R + +Q F+
Sbjct: 292 RNYLVQTEEQYIFI 305
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 27.6 bits (62), Expect = 3.1
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 87 EFLKSVFRE--DPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIRQ 136
+FLK V + + VHC AG+GR V + A++++ + E V IR
Sbjct: 212 KFLKKV-KACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDM-MHSERKVDVYGFVSRIRA 269
Query: 137 KRRGAI-NSKQIAFL 150
+R + Q F+
Sbjct: 270 QRCQMVQTDMQYVFI 284
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase,
rhodanese-like family, structural genomics, PSI-2,
protein structure initiative; HET: MSE; 1.80A
{Saccharomyces cerevisiae} PDB: 3fs5_A*
Length = 169
Score = 27.0 bits (59), Expect = 3.2
Identities = 15/99 (15%), Positives = 22/99 (22%), Gaps = 15/99 (15%)
Query: 64 INVKDLAYEDGTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVAL---AL 120
+ + EL E V HC+ R P L +L
Sbjct: 73 WHYAYSRLKQDPEYLRELKHRLLEKQAD---GRGALNVIFHCMLSQQRGPSAAMLLLRSL 129
Query: 121 IELGLKYEDAVELIRQKRRGAINSKQIAFLEKYKPKSRL 159
L L RG + + Y +
Sbjct: 130 DTAELSRCRLWVL-----RGGFS----RWQSVYGDDESV 159
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP;
1.65A {Bacillus circulans}
Length = 428
Score = 27.5 bits (62), Expect = 3.4
Identities = 5/49 (10%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 59 LKTEGINVKDLAYEDGTSP----SPELVDEWFEFLKSVFREDPDTCVAV 103
+ + + L T P + ++ + L+S +++
Sbjct: 1 MNLDQAEITALTKRFET-PFYLYDGDFIEAHYRQLRSRTNPAIQFYLSL 48
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 27.3 bits (61), Expect = 3.5
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 103 VHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIRQKRRGAI 142
VH AG+GR +A + L+ E +RQ R G I
Sbjct: 236 VHSSAGIGRTGCFIATSICCQQ-LRQEGVVDILKTTCQLRQDRGGMI 281
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Length = 161
Score = 26.9 bits (59), Expect = 3.7
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 77 PSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVM 115
E V+++ V + V HC R P M
Sbjct: 68 HMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRM 106
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 27.3 bits (61), Expect = 4.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 87 EFLKSV--FREDPDTCVAVHCVAGLGRAPVMVAL-ALIELGLKYE------DAVELIRQK 137
+F+ V R + V VHC AG+GR V++ + + L ++ D V +R +
Sbjct: 224 DFVCHVRNKRAGKEEPVVVHCSAGIGRTGVLITMETAMCL-IECNQPVYPLDIVRTMRDQ 282
Query: 138 RRGAI 142
R I
Sbjct: 283 RAMMI 287
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 27.2 bits (60), Expect = 4.2
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 87 EFLKSV---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA---------VE 132
FL + P + VHC AG+GR ++ + L+E + + ++
Sbjct: 431 SFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMEN-ISTKGLDCDIDIQKTIQ 489
Query: 133 LIRQKRRGAI-NSKQIAFL 150
++R +R G + Q F+
Sbjct: 490 MVRAQRSGMVQTEAQYKFI 508
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 27.2 bits (61), Expect = 4.3
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 87 EFLKSV---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYE------DAVELIR 135
+F+++V P VHC AG+GR +AL +++ L + AV +R
Sbjct: 203 QFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQ-LDSKDSVDIYGAVHDLR 261
Query: 136 QKRRGAI-NSKQIAFL 150
R + Q +L
Sbjct: 262 LHRVHMVQTECQYVYL 277
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 27.1 bits (60), Expect = 4.6
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 87 EFLKSV---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA---------VE 132
+FL+ V D V VHC AG+GR + + LI++ ++ + ++
Sbjct: 437 DFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDI-IREKGVDCDIDVPKTIQ 495
Query: 133 LIRQKRRGAI-NSKQIAFL 150
++R +R G + Q +
Sbjct: 496 MVRSQRSGMVQTEAQYRSI 514
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 26.9 bits (60), Expect = 5.0
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 87 EFLKSV---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA------VELIR 135
FL V +PD +HC AG+GR+ + + L ++ D + +R
Sbjct: 194 NFLFKVRESGSLNPDHGPAVIHCSAGIGRSGTFSLVDTCLVL-MEKGDDINIKQVLLNMR 252
Query: 136 QKRRGAI 142
+ R G I
Sbjct: 253 KYRMGLI 259
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 27.0 bits (60), Expect = 5.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 103 VHCVAGLGRAPVMVALALIELGLKYE----DAVELIRQKRRG 140
+H AG+GR ++ + + D V +R +R G
Sbjct: 239 IHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG 280
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 27.1 bits (60), Expect = 5.3
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 78 SPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIEL 123
E V+++ +F DP+T + + + P +
Sbjct: 305 PLEKVEQFLS----IFNLDPETIFDLKPLDPTVKVPFPTPTTIGAA 346
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB:
1gwz_A
Length = 284
Score = 26.9 bits (60), Expect = 5.4
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 87 EFLKSV---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA---------VE 132
FL + P + VH AG+GR ++ + L+E + + ++
Sbjct: 189 SFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMEN-ISTKGLDCDIDIQKTIQ 247
Query: 133 LIRQKRRGAI 142
++R +R G +
Sbjct: 248 MVRAQRSGMV 257
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 26.9 bits (60), Expect = 5.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 103 VHCVAGLGRAPVMVAL-ALIELGLKYE------DAVELIRQKRRGAI 142
VHC AG+GR V++ +I L++ + L+R++R I
Sbjct: 257 VHCSAGVGRTGVLILSELMIYC-LEHNEKVEVPMMLRLLREQRMFMI 302
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler
syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET:
FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A*
1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A*
3fjo_A* 1b1c_A*
Length = 618
Score = 26.9 bits (60), Expect = 6.0
Identities = 4/37 (10%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 78 SPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPV 114
LV++ + + D D ++++ +
Sbjct: 268 DSALVNQLGK----ILGADLDVVMSLNNLDEESNKKH 300
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 26.5 bits (59), Expect = 7.0
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 87 EFLKSV---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA---------VE 132
+FL+ V D V VHC AG+GR + + LI++ ++ + ++
Sbjct: 224 DFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDI-IREKGVDCDIDVPKTIQ 282
Query: 133 LIRQKRRGAI 142
++R +R G +
Sbjct: 283 MVRSQRSGMV 292
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 26.1 bits (57), Expect = 8.5
Identities = 25/124 (20%), Positives = 37/124 (29%), Gaps = 9/124 (7%)
Query: 6 IRPAPAEIEFKGFKFLITDRPTDLTIPNYILELKKHQVKNVVRVCEPTYKVEDLKTEGIN 65
+ P E + ++ LT I + H V V TY + +K
Sbjct: 63 LLPISGTNEAGKVDTIFSNESIVLT-EEMIEKTPNHCV--VYSGISNTYLNQCMKKTNRT 119
Query: 66 VKDLAYED---GTSPSPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPVMVALALIE 122
+ L D + P ++ V V GLGR + VA
Sbjct: 120 LVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANV---AVLGLGRVGMSVARKFAA 176
Query: 123 LGLK 126
LG K
Sbjct: 177 LGAK 180
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 26.4 bits (58), Expect = 9.3
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 87 EFLKSV---FREDPDTC-VAVHCVAGLGRAPVMVAL-ALIELGLKYEDA---------VE 132
FL + P + VH AG+GR ++ + L+E + + ++
Sbjct: 431 SFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMEN-ISTKGLDCDIDIQKTIQ 489
Query: 133 LIRQKRRGAI 142
++R +R G +
Sbjct: 490 MVRAQRSGMV 499
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD,
oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB:
3qft_A*
Length = 458
Score = 26.1 bits (58), Expect = 9.8
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 78 SPELVDEWFEFLKSVFREDPDTCVAVHCVAGLGRAPV 114
LV++ + L D D ++++ +
Sbjct: 108 DSALVNQLGKILG----ADLDVVMSLNNLDEESNKKH 140
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Length = 443
Score = 26.0 bits (58), Expect = 9.9
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 53 TYKVEDLKTEGINVKDLAYEDGTSP----SPELVDEWFEFLKSVFRE-DPDTCVAV 103
Y+ L E +++ ++A GT P S ++ F F + D A+
Sbjct: 27 EYRNGVLHAENVSLPEIAKAVGT-PFYVYSRATIERHFRVFHDAFADMDTLVTYAL 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,202,770
Number of extensions: 191222
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 111
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)