BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12445
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HZQ|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod) In
Complex With Progesterone
pdb|2HZR|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod)
Length = 174
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
+Y G WYE E+ FE G+C+ ANY+ NG +V+N + + G + IEGE
Sbjct: 19 KYPGRWYEIEKIPTTFE-NGRCIQANYSLXENGKIKVLNQELRA-DGTVNQIEGEATPVN 76
Query: 132 RSDTSKFFIKF----PSLP 146
++ +K +KF PS P
Sbjct: 77 LTEPAKLEVKFSWFXPSAP 95
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 70
+Y G WYE E+ FE G+C+ ANY+ NG +V+N + + G + IEGE
Sbjct: 19 KYPGRWYEIEKIPTTFE-NGRCIQANYSLXENGKIKVLNQELRA-DGTVNQIEGE 71
>pdb|3MBT|A Chain A, Structure Of Monomeric Blc From E. Coli
Length = 168
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
RY+G WYE R+ FE + V+A Y+ +G V+N + G+ EG+ + G
Sbjct: 20 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTG 79
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 126
RY+G WYE R+ FE + V+A Y+ +G V+N + G+ EG+
Sbjct: 20 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGK 74
>pdb|2ACO|A Chain A, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
pdb|2ACO|B Chain B, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
Length = 173
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 45 EGNGIYRVVNTQTSSITGITSNIEGEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNG 104
E +Y+ + + +N + + RY+G WYE R+ FE + V+A Y+ +G
Sbjct: 8 ESTSLYKKAGSTPPRGVTVVNNFDAK-RYLGTWYEIARFDHRFERGLEKVTATYSLRDDG 66
Query: 105 IYRVVNTQTSSITGITSNIEGE 126
V+N + G+ EG+
Sbjct: 67 GLNVINKGYNPDRGMWQQSEGK 88
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
RY+G WYE R+ FE + V+A Y+ +G V+N + G+ EG+ + G
Sbjct: 34 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTG 93
>pdb|1QWD|A Chain A, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
pdb|1QWD|B Chain B, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
Length = 177
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 45 EGNGIYRVVNTQTSSITGITSNIEGEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNG 104
E +Y+ ++ + +N + + RY+G WYE R+ FE + V+A Y+ +G
Sbjct: 12 ESTSLYKKSSSTPPRGVTVVNNFDAK-RYLGTWYEIARFDHRFERGLEKVTATYSLRDDG 70
Query: 105 IYRVVNTQTSSITGITSNIEGE 126
V+N + G+ EG+
Sbjct: 71 GLNVINKGYNPDRGMWQQSEGK 92
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
RY+G WYE R+ FE + V+A Y+ +G V+N + G+ EG+ + G
Sbjct: 38 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTG 97
>pdb|1BBP|A Chain A, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution.
pdb|1BBP|B Chain B, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution.
pdb|1BBP|C Chain C, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution.
pdb|1BBP|D Chain D, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution
Length = 173
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 73 YMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFER 132
Y G W+E +Y E GKC A YT EG + +V N I G IEG
Sbjct: 22 YHGKWWEVAKYPNSVEKYGKCGWAEYTPEGKSV-KVSNYHV--IHGKEYFIEGTAYPVGD 78
Query: 133 SDTSKFFIKF 142
S K + K
Sbjct: 79 SKIGKIYHKL 88
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 17 YMGIWYEAERYFAVFEFAGKCVSANYTNEGNGI----YRVVNTQTSSITG 62
Y G W+E +Y E GKC A YT EG + Y V++ + I G
Sbjct: 22 YHGKWWEVAKYPNSVEKYGKCGWAEYTPEGKSVKVSNYHVIHGKEYFIEG 71
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 61 TGITSNIEGEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGIT 120
GIT N++G+ + IWY A + + + A + NE I +V+ +Q + +
Sbjct: 279 VGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNE---IRKVLTSQLQACREAS 335
Query: 121 SNIEGEIRVFERSDT 135
+ R E+S +
Sbjct: 336 QH-----RALEQSHS 345
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 61 TGITSNIEGEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGIT 120
GIT N++G+ + IWY A + + + A + NE I +V+ +Q + +
Sbjct: 279 VGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNE---IRKVLTSQLQACREAS 335
Query: 121 SNIEGEIRVFERSDT 135
+ R E+S +
Sbjct: 336 QH-----RALEQSHS 345
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 61 TGITSNIEGEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGIT 120
GIT N++G+ + IWY A + + + A + NE I +V+ +Q + +
Sbjct: 279 VGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNE---IRKVLTSQLQACREAS 335
Query: 121 SNIEGEIRVFERSDT 135
+ R E+S +
Sbjct: 336 QH-----RALEQSHS 345
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 61 TGITSNIEGEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGIT 120
GIT N++G+ + IWY A + + + A + N I +V+ +Q + +
Sbjct: 279 VGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWV---NAIRKVLTSQLQACREAS 335
Query: 121 SNIEGEIRVFERSDT 135
+ R E+S +
Sbjct: 336 QH-----RALEQSHS 345
>pdb|1T0V|A Chain A, Nmr Solution Structure Of The Engineered Lipocalin
Flua(R95k) Northeast Structural Genomics Target Or17
Length = 184
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGI 49
+Y G W+E +Y + GKC A YT EG +
Sbjct: 21 QYHGKWWEVAKYPSPNGKYGKCGWAEYTPEGKSV 54
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGI 105
+Y G W+E +Y + GKC A YT EG +
Sbjct: 21 QYHGKWWEVAKYPSPNGKYGKCGWAEYTPEGKSV 54
>pdb|1N0S|A Chain A, Engineered Lipocalin Flua In Complex With Fluorescein
pdb|1N0S|B Chain B, Engineered Lipocalin Flua In Complex With Fluorescein
Length = 184
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGI 49
+Y G W+E +Y + GKC A YT EG +
Sbjct: 21 QYHGKWWEVAKYPSPNGKYGKCGWAEYTPEGKSV 54
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGI 105
+Y G W+E +Y + GKC A YT EG +
Sbjct: 21 QYHGKWWEVAKYPSPNGKYGKCGWAEYTPEGKSV 54
>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 433
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 69 GEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 128
G++ M ++ E RY +F K V ++ +G IY+V +T+T + + SN+ G
Sbjct: 87 GQLVKMLLYTEVTRYL---DF--KVVEGSFVYKGGKIYKVPSTETEA---LASNLMG--- 135
Query: 129 VFERSDTSKFFI 140
+FE+ KF +
Sbjct: 136 MFEKRRFRKFLV 147
>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide
Dissociation Inhibitor (Gdi) In Complex With A
Geranylgeranyl (Gg) Peptide
Length = 449
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 69 GEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 128
G++ M ++ E RY K V ++ +G IY+V +T+T + + SN+ G
Sbjct: 87 GQLVKMLLYTEVTRYLDF-----KVVEGSFVYKGGKIYKVPSTETEA---LASNLMG--- 135
Query: 129 VFERSDTSKFFI 140
+FE+ KF +
Sbjct: 136 MFEKRRFRKFLV 147
>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 447
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 69 GEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 128
G++ M ++ E RY K V ++ +G IY+V +T+T + + SN+ G
Sbjct: 85 GQLVKMLLYTEVTRYLDF-----KVVEGSFVYKGGKIYKVPSTETEA---LASNLMG--- 133
Query: 129 VFERSDTSKFFI 140
+FE+ KF +
Sbjct: 134 MFEKRRFRKFLV 145
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 40 ANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMGIWYEAERYFAVFEFAG 91
A+ N+ N +VNT T G + EGE+ Y I E F AG
Sbjct: 27 AHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAG 78
>pdb|1KXO|A Chain A, Engineered Lipocalin Diga16 : Apo-Form
pdb|1LKE|A Chain A, Engineered Lipocalin Diga16 In Complex With Digoxigenin
pdb|1LNM|A Chain A, Anticalin Diga16 In Complex With Digitoxigenin
Length = 184
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGI 49
+Y G W++ Y GKC A YT EG +
Sbjct: 21 QYHGKWWQVAAYPDHITKYGKCGWAEYTPEGKSV 54
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGI 105
+Y G W++ Y GKC A YT EG +
Sbjct: 21 QYHGKWWQVAAYPDHITKYGKCGWAEYTPEGKSV 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,397,383
Number of Sequences: 62578
Number of extensions: 165508
Number of successful extensions: 407
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 34
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)