BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12445
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P05090|APOD_HUMAN Apolipoprotein D OS=Homo sapiens GN=APOD PE=1 SV=1
Length = 189
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
+Y+G WYE E+ FE G+C+ ANY+ NG +V+N + + G + IEGE
Sbjct: 41 KYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA-DGTVNQIEGEATPVN 98
Query: 132 RSDTSKFFIKF----PSLP 146
++ +K +KF PS P
Sbjct: 99 LTEPAKLEVKFSWFMPSAP 117
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 70
+Y+G WYE E+ FE G+C+ ANY+ NG +V+N + + G + IEGE
Sbjct: 41 KYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA-DGTVNQIEGE 93
>sp|P51910|APOD_MOUSE Apolipoprotein D OS=Mus musculus GN=Apod PE=2 SV=1
Length = 189
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
+Y+G WYE E+ A FE G C+ ANY+ NG V+N + S G + ++GE +
Sbjct: 41 KYLGRWYEIEKIPASFE-KGNCIQANYSLMENGNIEVLNKELSP-DGTMNQVKGEAKQSN 98
Query: 132 RSDTSKFFIK-FPSLPNFP 149
S+ +K ++ FP +P P
Sbjct: 99 VSEPAKLEVQFFPLMPPAP 117
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 72
+Y+G WYE E+ A FE G C+ ANY+ NG V+N + S G + ++GE +
Sbjct: 41 KYLGRWYEIEKIPASFE-KGNCIQANYSLMENGNIEVLNKELSP-DGTMNQVKGEAK 95
>sp|Q8SPI0|APOD_MACFA Apolipoprotein D OS=Macaca fascicularis GN=APOD PE=2 SV=1
Length = 189
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
+Y G WYE E+ FE G+C+ ANY+ + NG +V+N + + G + IEGE
Sbjct: 41 KYFGRWYEIEKIPTTFE-KGRCIQANYSLKENGKIKVLNQELRA-DGTVNQIEGEASPVN 98
Query: 132 RSDTSKFFIKF----PSLP 146
++ +K +KF PS P
Sbjct: 99 ITEPAKLEVKFFWFMPSAP 117
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
+Y G WYE E+ FE G+C+ ANY+ + NG +V+N + + G + IEGE +
Sbjct: 41 KYFGRWYEIEKIPTTFE-KGRCIQANYSLKENGKIKVLNQELRA-DGTVNQIEGEASPVN 98
Query: 76 I 76
I
Sbjct: 99 I 99
>sp|Q32KY0|APOD_BOVIN Apolipoprotein D OS=Bos taurus GN=APOD PE=2 SV=1
Length = 189
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
+Y+G WYE E+ FE G C+ ANY+ + NG V+N + + G + IEGE
Sbjct: 41 KYLGKWYEIEKIPVSFE-KGSCIQANYSLKENGNVEVINKELRA-DGTVNQIEGEATPEN 98
Query: 132 RSDTSKFFIKF----PSLP 146
++ +K +KF PS P
Sbjct: 99 ITEPAKLAVKFFWFMPSAP 117
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 70
+Y+G WYE E+ FE G C+ ANY+ + NG V+N + + G + IEGE
Sbjct: 41 KYLGKWYEIEKIPVSFE-KGSCIQANYSLKENGNVEVINKELRA-DGTVNQIEGE 93
>sp|P51909|APOD_CAVPO Apolipoprotein D OS=Cavia porcellus GN=APOD PE=2 SV=1
Length = 189
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
+Y+G WYE E+ FE G C+ ANY+ + NG +V+N Q G + IEGE
Sbjct: 41 KYLGRWYEIEKIPVSFE-KGNCIQANYSLKENGRVKVLN-QELRPDGTVNQIEGEATHSN 98
Query: 132 RSDTSKFFIKF----PSLP 146
++ +K +KF PS P
Sbjct: 99 ITEPAKLGVKFFQLMPSAP 117
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
+Y+G WYE E+ FE G C+ ANY+ + NG +V+N Q G + IEGE +
Sbjct: 41 KYLGRWYEIEKIPVSFE-KGNCIQANYSLKENGRVKVLN-QELRPDGTVNQIEGEATHSN 98
Query: 76 I 76
I
Sbjct: 99 I 99
>sp|P23593|APOD_RAT Apolipoprotein D OS=Rattus norvegicus GN=Apod PE=1 SV=1
Length = 189
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
+Y+G WYE E+ FE G C+ ANY+ NG +V+N + G + +EGE +
Sbjct: 41 KYLGRWYEIEKIPVSFE-KGNCIQANYSLMENGNIKVLNKELRP-DGTLNQVEGEAKQSN 98
Query: 132 RSDTSKFFIKFPSL 145
S+ +K ++F SL
Sbjct: 99 MSEPAKLEVQFFSL 112
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 72
+Y+G WYE E+ FE G C+ ANY+ NG +V+N + G + +EGE +
Sbjct: 41 KYLGRWYEIEKIPVSFE-KGNCIQANYSLMENGNIKVLNKELRP-DGTLNQVEGEAK 95
>sp|P37153|APOD_RABIT Apolipoprotein D OS=Oryctolagus cuniculus GN=APOD PE=2 SV=1
Length = 189
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
+Y+G WYE E+ FE G C+ ANY+ NG +V+N Q G + IEG+
Sbjct: 42 KYLGRWYEIEKIPVSFE-KGNCIQANYSLMENGNIKVLN-QELRPDGTVNQIEGQATQSN 99
Query: 132 RSDTSKFFIKF 142
++ +K +KF
Sbjct: 100 LTEPAKLGVKF 110
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 70
+Y+G WYE E+ FE G C+ ANY+ NG +V+N Q G + IEG+
Sbjct: 42 KYLGRWYEIEKIPVSFE-KGNCIQANYSLMENGNIKVLN-QELRPDGTVNQIEGQ 94
>sp|P0A901|BLC_ECOLI Outer membrane lipoprotein blc OS=Escherichia coli (strain K12)
GN=blc PE=1 SV=1
Length = 177
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
RY+G WYE R+ FE + V+A Y+ +G V+N + G+ EG+ + G
Sbjct: 38 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTG 97
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 126
RY+G WYE R+ FE + V+A Y+ +G V+N + G+ EG+
Sbjct: 38 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGK 92
>sp|P0A902|BLC_ECO57 Outer membrane lipoprotein blc OS=Escherichia coli O157:H7 GN=blc
PE=3 SV=1
Length = 177
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
RY+G WYE R+ FE + V+A Y+ +G V+N + G+ EG+ + G
Sbjct: 38 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTG 97
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 126
RY+G WYE R+ FE + V+A Y+ +G V+N + G+ EG+
Sbjct: 38 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGK 92
>sp|P49291|LAZA_SCHAM Lazarillo protein OS=Schistocerca americana PE=1 SV=1
Length = 214
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 73 YMGIWYEAERYFAV-FEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR-VF 130
YMG WYE + ++ +E G CV+A Y+ N I VVN+ + T + G
Sbjct: 42 YMGKWYEYAKMGSMPYEEGGVCVTAEYSMSSNNI-TVVNSMKDNTTHEVNTTTGWAEFAS 100
Query: 131 ERSDTSKFFIKFPSLPN 147
E K + FP+ P+
Sbjct: 101 ELHTDGKLSVHFPNSPS 117
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 17 YMGIWYEAERYFAV-FEFAGKCVSANYTNEGNGIYRVVNTQTSSIT 61
YMG WYE + ++ +E G CV+A Y+ N I VVN+ + T
Sbjct: 42 YMGKWYEYAKMGSMPYEEGGVCVTAEYSMSSNNI-TVVNSMKDNTT 86
>sp|Q46036|BLC_CITFR Outer membrane lipoprotein blc OS=Citrobacter freundii PE=3 SV=1
Length = 177
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
RY+G WYE R+ FE V+A Y+ +G V+N + + EG+ + G
Sbjct: 38 RYLGTWYEIARFDHRFERGLDKVTATYSLRDDGGINVINKGYNPDREMWQKTEGKAYFTG 97
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVN 110
RY+G WYE R+ FE V+A Y+ +G V+N
Sbjct: 38 RYLGTWYEIARFDHRFERGLDKVTATYSLRDDGGINVIN 76
>sp|P17281|ENV_SIVCZ Envelope glycoprotein gp160 OS=Simian immunodeficiency virus
(isolate CPZ GAB1) GN=env PE=3 SV=1
Length = 854
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 41 NYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMGIWYEAERYFAV-------FEFAGKC 93
N NE N YR++N T++IT E + I Y A FA+ F GKC
Sbjct: 181 NLGNENN-TYRIINCNTTAITQACPKTSFEP--IPIHYCAPAGFAILKCNDKDFSGKGKC 237
Query: 94 VSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFERSDTSKFFI 140
+ + + +GI VV TQ I G + +RV +S + +I
Sbjct: 238 TNVSTVHCTHGIKPVVTTQL-LINGSLAEGNITVRVENKSKNTDVWI 283
>sp|Q63406|MCF2L_RAT Guanine nucleotide exchange factor DBS OS=Rattus norvegicus
GN=Mcf2l PE=2 SV=3
Length = 1149
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 50 YRVVNTQTSSITGITSNIEGEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVV 109
Y + + GIT N++G+ + IWY A + + + A + NE I +V+
Sbjct: 889 YSYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNE---IRKVL 945
Query: 110 NTQ 112
+Q
Sbjct: 946 TSQ 948
>sp|Q64096|MCF2L_MOUSE Guanine nucleotide exchange factor DBS OS=Mus musculus GN=Mcf2l
PE=1 SV=2
Length = 1149
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 50 YRVVNTQTSSITGITSNIEGEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVV 109
Y + + GIT N++G+ + IWY A + + + A + NE I +V+
Sbjct: 889 YSYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNE---IRKVL 945
Query: 110 NTQ 112
+Q
Sbjct: 946 TSQ 948
>sp|P09464|BBP_PIEBR Bilin-binding protein OS=Pieris brassicae PE=1 SV=2
Length = 189
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 73 YMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFER 132
Y G W+E +Y E GKC A YT EG + +V N I G IEG
Sbjct: 37 YHGKWWEVAKYPNSVEKYGKCGWAEYTPEGKSV-KVSNYHV--IHGKEYFIEGTAYPVGD 93
Query: 133 SDTSKFFIKF 142
S K + K
Sbjct: 94 SKIGKIYHKL 103
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 17 YMGIWYEAERYFAVFEFAGKCVSANYTNEGNGI----YRVVNTQTSSITG 62
Y G W+E +Y E GKC A YT EG + Y V++ + I G
Sbjct: 37 YHGKWWEVAKYPNSVEKYGKCGWAEYTPEGKSVKVSNYHVIHGKEYFIEG 86
>sp|O15068|MCF2L_HUMAN Guanine nucleotide exchange factor DBS OS=Homo sapiens GN=MCF2L
PE=1 SV=2
Length = 1137
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 62 GITSNIEGEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQ 112
GIT N++G+ + IWY A + + + A + NE I +V+ +Q
Sbjct: 900 GITENVKGDAKKFEIWYNAREEVYIVQAPTPEIKAAWVNE---IRKVLTSQ 947
>sp|Q5ECE3|LOPAP_LONON Lopap OS=Lonomia obliqua PE=1 SV=2
Length = 201
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 17 YMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRV 52
Y G WYE +++ E G C S YT + NG+ +V
Sbjct: 38 YQGTWYEIKKFPVANEANGDCGSVEYTPD-NGLLKV 72
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 73 YMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRV 108
Y G WYE +++ E G C S YT + NG+ +V
Sbjct: 38 YQGTWYEIKKFPVANEANGDCGSVEYTPD-NGLLKV 72
>sp|P05882|ENV_HV1Z8 Envelope glycoprotein gp160 OS=Human immunodeficiency virus type 1
group M subtype D (isolate Z84) GN=env PE=3 SV=1
Length = 863
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 39 SANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMGIWYEAERYFAV-------FEFAG 91
SAN +N YR++N TS+IT + E + I Y A FA+ F G
Sbjct: 192 SANTSNTNYTNYRLINCNTSAITQACPKVTFEP--IPIHYCAPAGFAILKCKDKKFNGTG 249
Query: 92 KCVSANYTNEGNGIYRVVNTQ 112
C + +GI VV+TQ
Sbjct: 250 PCKKVSTVQCTHGIRPVVSTQ 270
>sp|Q5M900|B3GL2_XENTR UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 OS=Xenopus
tropicalis GN=b3galnt2 PE=2 SV=1
Length = 488
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 7 RFAYTETSLRYMGIWYEAERYFAVFE-FAGKCVSANYTNEG---NGIYRVVNTQTSSITG 62
RF+ + ++ GIWY+ F + E F G V ++ EG ++RV+ I
Sbjct: 180 RFSPASSGVQVNGIWYKPVEQFILPEGFEGTVVWESHDPEGLLSGNVHRVIVNDGGGIFR 239
Query: 63 ITSNIEGEIRY 73
IT+ EG + Y
Sbjct: 240 ITTVKEGLLPY 250
>sp|P45433|SSRA_ONCMY Translocon-associated protein subunit alpha OS=Oncorhynchus mykiss
GN=ssr1 PE=2 SV=1
Length = 288
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 35 GKCVSANYTN-EGNGIYRVVNTQTSSITGITSNIEGEIRYMGIWYEAERYFAVF 87
G + NY + EGNG + QT +I + ++GE +M I+ AVF
Sbjct: 171 GLVILLNYQDSEGNGFQTAIYNQTVTIVELEEGLDGETIFMYIFLTGLVVLAVF 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,956,851
Number of Sequences: 539616
Number of extensions: 1921267
Number of successful extensions: 4905
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4861
Number of HSP's gapped (non-prelim): 41
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)