Query psy12445
Match_columns 150
No_of_seqs 209 out of 1335
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 19:29:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08212 Lipocalin_2: Lipocali 99.8 7.4E-21 1.6E-25 139.2 8.4 78 69-147 2-79 (143)
2 COG3040 Blc Bacterial lipocali 99.8 7.9E-20 1.7E-24 135.7 6.8 78 69-147 32-109 (174)
3 PF08212 Lipocalin_2: Lipocali 99.7 2.2E-18 4.7E-23 126.1 6.5 68 12-79 1-76 (143)
4 PRK10477 outer membrane lipopr 99.7 1.6E-17 3.4E-22 125.7 7.0 76 69-144 35-110 (177)
5 COG3040 Blc Bacterial lipocali 99.7 9.2E-18 2E-22 124.7 5.5 74 6-79 25-107 (174)
6 PRK10477 outer membrane lipopr 99.7 2.7E-17 5.8E-22 124.4 3.5 75 4-78 26-109 (177)
7 KOG4824|consensus 99.6 2.6E-15 5.6E-20 114.1 6.3 84 59-143 28-117 (224)
8 KOG4824|consensus 99.6 4.7E-15 1E-19 112.7 5.5 80 2-81 32-122 (224)
9 PF00061 Lipocalin: Lipocalin 96.7 0.0034 7.4E-08 44.3 4.9 67 74-144 1-72 (144)
10 PF00061 Lipocalin: Lipocalin 96.5 0.0043 9.2E-08 43.8 4.4 60 18-79 1-72 (144)
11 PF07137 VDE: Violaxanthin de- 86.8 4.8 0.0001 31.1 7.5 70 69-140 35-106 (198)
12 PF07137 VDE: Violaxanthin de- 78.0 15 0.00032 28.4 7.2 39 8-47 30-68 (198)
13 PF07215 DUF1419: Protein of u 68.8 2.5 5.4E-05 29.6 0.9 12 15-26 39-50 (111)
14 PLN02372 violaxanthin de-epoxi 67.0 28 0.0006 30.1 6.9 70 69-139 202-273 (455)
15 PF11032 ApoM: Apolipoprotein 66.7 56 0.0012 25.0 9.0 19 8-26 30-52 (186)
16 PHA02122 hypothetical protein 53.8 31 0.00067 21.4 3.8 27 85-111 35-61 (65)
17 PF03973 Triabin: Triabin; In 52.3 5 0.00011 29.5 0.1 47 4-53 13-60 (148)
18 KOG0277|consensus 32.1 1.6E+02 0.0034 24.2 5.7 54 26-79 15-70 (311)
19 COG0450 AhpC Peroxiredoxin [Po 26.9 43 0.00092 25.9 1.7 35 9-45 23-57 (194)
20 PF12141 DUF3589: Protein of u 25.7 1.2E+02 0.0027 26.8 4.5 78 71-150 59-148 (498)
21 KOG4802|consensus 21.2 1.7E+02 0.0038 25.5 4.4 17 62-78 275-293 (516)
22 PF01344 Kelch_1: Kelch motif; 21.1 1.1E+02 0.0024 16.8 2.3 21 6-28 27-47 (47)
23 TIGR03066 Gem_osc_para_1 Gemma 20.7 3.1E+02 0.0067 19.2 5.9 17 63-79 12-29 (111)
No 1
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=99.84 E-value=7.4e-21 Score=139.17 Aligned_cols=78 Identities=35% Similarity=0.604 Sum_probs=65.5
Q ss_pred cceeEEeEeeeccccceeecccceeeeEEEEecCCceEEEEEeEEecCCCCeEEEEEEEEEeCCCCCcEEEEEeCCCCC
Q psy12445 69 GEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFERSDTSKFFIKFPSLPN 147 (150)
Q Consensus 69 ~~~r~~g~wy~iar~~~~fe~~~~C~~a~Yt~~~dg~i~V~n~~~~~~~g~~~~~~G~a~~~~~~~~akl~V~f~~~p~ 147 (150)
|+.||+|+||||||+|+.||++|.|++++|++.+||.|+|.|+|+. .+|+...+.|+|++.+++.+|||+|+|++.|.
T Consensus 2 Dl~rY~G~WYEiar~p~~~q~~~~~~~a~Yt~~~dg~i~V~n~~~~-~~g~~~~~~g~a~~~~~~~~~~l~V~f~~~~~ 79 (143)
T PF08212_consen 2 DLDRYMGTWYEIARYPNFFQRGCVCVTAEYTLRDDGTISVRNSCRR-PDGKIKTIRGTATVVDPSGPAKLKVRFPGIPF 79 (143)
T ss_dssp -CCCC-EEEEEEEEE--CCCTT-ECEEEEEEE-TTS-EEEEEEEEE-TTTCCCEEEEEEEESSBTTSSEEEEESST---
T ss_pred ChHHcCEeeeEEEEECCcccceeeeeeeeEEEcCCCEEEEEEEEEc-CCCCEEEEEeEEEEcCCCCccEEEEEEecccc
Confidence 6889999999999999999999999999999999999999999987 79999999999999998889999999998443
No 2
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=7.9e-20 Score=135.66 Aligned_cols=78 Identities=29% Similarity=0.454 Sum_probs=71.9
Q ss_pred cceeEEeEeeeccccceeecccceeeeEEEEecCCceEEEEEeEEecCCCCeEEEEEEEEEeCCCCCcEEEEEeCCCCC
Q psy12445 69 GEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFERSDTSKFFIKFPSLPN 147 (150)
Q Consensus 69 ~~~r~~g~wy~iar~~~~fe~~~~C~~a~Yt~~~dg~i~V~n~~~~~~~g~~~~~~G~a~~~~~~~~akl~V~f~~~p~ 147 (150)
++.+|+|+||||||+|+.||++|..++|+|++++|+.|.|.|+|.....++++.++|+|+++++...++|+|+|++ |+
T Consensus 32 dl~~Y~G~WyEvaR~p~~f~~gc~~vtA~Y~l~d~~~I~V~n~c~~~~~~~~~~ieGkA~i~~~~~~a~LkVsF~~-pF 109 (174)
T COG3040 32 DLQRYLGKWYEVARLPMRFEKGCVQVTATYSLRDDGGISVINRCRTGDGGKWSQIEGKAKIVDNATRAKLKVSFFG-PF 109 (174)
T ss_pred chhhcceeeeeeecccchhhhcceeeEeEEEEecCCceEEEeccccCCCCCceeecceEEEecCccccEEEEEecC-Cc
Confidence 8899999999999999999999999999999999999999999976433489999999999998889999999988 43
No 3
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=99.75 E-value=2.2e-18 Score=126.06 Aligned_cols=68 Identities=31% Similarity=0.490 Sum_probs=49.0
Q ss_pred ccccccceeeEEEeecCCccccCceeeeEEEeecCceeEEEEeeeee------eecce--eeccccceeEEeEeee
Q psy12445 12 ETSLRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTS------SITGI--TSNIEGEIRYMGIWYE 79 (150)
Q Consensus 12 ~d~~ry~G~Wyeiar~p~~~~~~~~c~~a~Ytl~~~g~I~V~N~~~~------~i~G~--c~~~~~~~r~~g~wy~ 79 (150)
|||+||||+||||||+|+.||++|.|++|+|++.+++.|.|.|+|.. .+.|. ..+...++++.++|..
T Consensus 1 ~Dl~rY~G~WYEiar~p~~~q~~~~~~~a~Yt~~~dg~i~V~n~~~~~~g~~~~~~g~a~~~~~~~~~~l~V~f~~ 76 (143)
T PF08212_consen 1 VDLDRYMGTWYEIARYPNFFQRGCVCVTAEYTLRDDGTISVRNSCRRPDGKIKTIRGTATVVDPSGPAKLKVRFPG 76 (143)
T ss_dssp --CCCC-EEEEEEEEE--CCCTT-ECEEEEEEE-TTS-EEEEEEEEETTTCCCEEEEEEEESSBTTSSEEEEESST
T ss_pred CChHHcCEeeeEEEEECCcccceeeeeeeeEEEcCCCEEEEEEEEEcCCCCEEEEEeEEEEcCCCCccEEEEEEec
Confidence 79999999999999999999999999999999999999999999974 22342 2233357888888754
No 4
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=99.71 E-value=1.6e-17 Score=125.70 Aligned_cols=76 Identities=25% Similarity=0.392 Sum_probs=71.6
Q ss_pred cceeEEeEeeeccccceeecccceeeeEEEEecCCceEEEEEeEEecCCCCeEEEEEEEEEeCCCCCcEEEEEeCC
Q psy12445 69 GEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFERSDTSKFFIKFPS 144 (150)
Q Consensus 69 ~~~r~~g~wy~iar~~~~fe~~~~C~~a~Yt~~~dg~i~V~n~~~~~~~g~~~~~~G~a~~~~~~~~akl~V~f~~ 144 (150)
|+.||+|+|||||++|+.||++|.|++++|++.+||+|.|.|+|.+..+|..+.+.|+|++.++..+++|+|+|++
T Consensus 35 Dl~ry~G~WYeIar~~~~fe~~~~~~~a~Y~~~~~g~i~V~n~~~~~~~g~~~~~~g~a~~~~~~~~~~~~v~f~~ 110 (177)
T PRK10477 35 DAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQESEGKAYFTGAPTRAALKVSFFG 110 (177)
T ss_pred CHHHhccHHHHhhcCCchhhcCceeEEEEEEECCCCcEEEEEeeEcCCCCCEEEEEEEEEecCCCCCeEEEEEecC
Confidence 8899999999999999999999999999999999999999999987556999999999999888889999999975
No 5
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=9.2e-18 Score=124.67 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=61.5
Q ss_pred eeeeecccccccceeeEEEeecCCccccCceeeeEEEeecCceeEEEEeeeee-------eecceeeccc--cceeEEeE
Q psy12445 6 LRFAYTETSLRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTS-------SITGITSNIE--GEIRYMGI 76 (150)
Q Consensus 6 ~~~~~~~d~~ry~G~Wyeiar~p~~~~~~~~c~~a~Ytl~~~g~I~V~N~~~~-------~i~G~c~~~~--~~~r~~g~ 76 (150)
...+..||++||+|+||||||+|++||++|..++|+|.+++++.|.|.|.|.. ++.|+-.... ..+++.++
T Consensus 25 p~~~~~~dl~~Y~G~WyEvaR~p~~f~~gc~~vtA~Y~l~d~~~I~V~n~c~~~~~~~~~~ieGkA~i~~~~~~a~LkVs 104 (174)
T COG3040 25 PKPVNNFDLQRYLGKWYEVARLPMRFEKGCVQVTATYSLRDDGGISVINRCRTGDGGKWSQIEGKAKIVDNATRAKLKVS 104 (174)
T ss_pred CCcccccchhhcceeeeeeecccchhhhcceeeEeEEEEecCCceEEEeccccCCCCCceeecceEEEecCccccEEEEE
Confidence 45677899999999999999999999999999999999999999999999963 3445433332 45888888
Q ss_pred eee
Q psy12445 77 WYE 79 (150)
Q Consensus 77 wy~ 79 (150)
|+.
T Consensus 105 F~~ 107 (174)
T COG3040 105 FFG 107 (174)
T ss_pred ecC
Confidence 864
No 6
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=99.67 E-value=2.7e-17 Score=124.44 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=61.1
Q ss_pred cceeeeecccccccceeeEEEeecCCccccCceeeeEEEeecCceeEEEEeeeeee-------ecce--eeccccceeEE
Q psy12445 4 SHLRFAYTETSLRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSS-------ITGI--TSNIEGEIRYM 74 (150)
Q Consensus 4 ~~~~~~~~~d~~ry~G~Wyeiar~p~~~~~~~~c~~a~Ytl~~~g~I~V~N~~~~~-------i~G~--c~~~~~~~r~~ 74 (150)
.++..+++||++||||+||||||+|+.||++|.|++|+|++.+++.|.|.|+|... +.|. .+.....+++.
T Consensus 26 ~~~~~~~~fDl~ry~G~WYeIar~~~~fe~~~~~~~a~Y~~~~~g~i~V~n~~~~~~~g~~~~~~g~a~~~~~~~~~~~~ 105 (177)
T PRK10477 26 KGVTVVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQESEGKAYFTGAPTRAALK 105 (177)
T ss_pred CCCcccCccCHHHhccHHHHhhcCCchhhcCceeEEEEEEECCCCcEEEEEeeEcCCCCCEEEEEEEEEecCCCCCeEEE
Confidence 46788999999999999999999999999999999999999999999999998632 2232 12223556777
Q ss_pred eEee
Q psy12445 75 GIWY 78 (150)
Q Consensus 75 g~wy 78 (150)
++|+
T Consensus 106 v~f~ 109 (177)
T PRK10477 106 VSFF 109 (177)
T ss_pred EEec
Confidence 7764
No 7
>KOG4824|consensus
Probab=99.58 E-value=2.6e-15 Score=114.07 Aligned_cols=84 Identities=31% Similarity=0.470 Sum_probs=71.8
Q ss_pred eecceeeccc-----cceeEEeEeeeccccceeecccceeeeEEEEecC-CceEEEEEeEEecCCCCeEEEEEEEEEeCC
Q psy12445 59 SITGITSNIE-----GEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEG-NGIYRVVNTQTSSITGITSNIEGEIRVFER 132 (150)
Q Consensus 59 ~i~G~c~~~~-----~~~r~~g~wy~iar~~~~fe~~~~C~~a~Yt~~~-dg~i~V~n~~~~~~~g~~~~~~G~a~~~~~ 132 (150)
...|.||..+ ++.||+|+|||||++|..||....|.+..|++.. +|+|+|.|.+++++||....++|.|++.+
T Consensus 28 ~~lg~cpnypv~knFnv~RylGrWYEVas~p~~fe~~~gctt~~y~~~nkngkI~Vln~~v~r~dG~~n~ieG~atpvn- 106 (224)
T KOG4824|consen 28 IALGECPNYPVAKNFNVERYLGRWYEVASFPRGFEGKGGCTTGAYTFDNKNGKIHVLNECVHRPDGKINFIEGKATPVN- 106 (224)
T ss_pred EeeccCCCCccccCCChhhhcceeeeeeccccccccCCCceeeeeEecCCCceEEEeeeeeecCCCccceeeeeeeecC-
Confidence 3447899876 8899999999999999999988789999998866 99999999999889999999999999998
Q ss_pred CCCcEEEEEeC
Q psy12445 133 SDTSKFFIKFP 143 (150)
Q Consensus 133 ~~~akl~V~f~ 143 (150)
+.++|+.++|.
T Consensus 107 ~~s~k~e~kf~ 117 (224)
T KOG4824|consen 107 EDSDKAELKFE 117 (224)
T ss_pred CchhhhcceeE
Confidence 44455444443
No 8
>KOG4824|consensus
Probab=99.56 E-value=4.7e-15 Score=112.68 Aligned_cols=80 Identities=26% Similarity=0.374 Sum_probs=65.0
Q ss_pred cccceeeeecccccccceeeEEEeecCCccccCceeeeEEEeecC-ceeEEEEeeeeee-------ecce--eeccc-cc
Q psy12445 2 KKSHLRFAYTETSLRYMGIWYEAERYFAVFEFAGKCVSANYTNEG-NGIYRVVNTQTSS-------ITGI--TSNIE-GE 70 (150)
Q Consensus 2 ~~~~~~~~~~~d~~ry~G~Wyeiar~p~~~~~~~~c~~a~Ytl~~-~g~I~V~N~~~~~-------i~G~--c~~~~-~~ 70 (150)
+++++++++.||++||||+||||||+|..||.+..|++..|++.. ++.|+|.|.|... +.|. |.+.. +.
T Consensus 32 ~cpnypv~knFnv~RylGrWYEVas~p~~fe~~~gctt~~y~~~nkngkI~Vln~~v~r~dG~~n~ieG~atpvn~~s~k 111 (224)
T KOG4824|consen 32 ECPNYPVAKNFNVERYLGRWYEVASFPRGFEGKGGCTTGAYTFDNKNGKIHVLNECVHRPDGKINFIEGKATPVNEDSDK 111 (224)
T ss_pred cCCCCccccCCChhhhcceeeeeeccccccccCCCceeeeeEecCCCceEEEeeeeeecCCCccceeeeeeeecCCchhh
Confidence 468999999999999999999999999999987779999998776 8999999999843 4453 22321 55
Q ss_pred eeEEeEeeecc
Q psy12445 71 IRYMGIWYEAE 81 (150)
Q Consensus 71 ~r~~g~wy~ia 81 (150)
+.+..+|++..
T Consensus 112 ~e~kf~~~~p~ 122 (224)
T KOG4824|consen 112 AELKFEFQEPI 122 (224)
T ss_pred hcceeEEecCc
Confidence 67778888654
No 9
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=96.72 E-value=0.0034 Score=44.33 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=48.1
Q ss_pred EeEeeecccc-----ceeecccceeeeEEEEecCCceEEEEEeEEecCCCCeEEEEEEEEEeCCCCCcEEEEEeCC
Q psy12445 74 MGIWYEAERY-----FAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFERSDTSKFFIKFPS 144 (150)
Q Consensus 74 ~g~wy~iar~-----~~~fe~~~~C~~a~Yt~~~dg~i~V~n~~~~~~~g~~~~~~G~a~~~~~~~~akl~V~f~~ 144 (150)
.|+||+++.. +..+.....|....+++.+++.+.+...... +|.-......+.. ...+++|.+.|..
T Consensus 1 ~G~Wy~v~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~--~~~~g~~~~~~~~ 72 (144)
T PF00061_consen 1 AGKWYEVALASDCPEFEEEKKELKCFPVVIKPLANGNLPVTFTSKR--GGQCVTITVTFKK--TEEPGKFTVEFSE 72 (144)
T ss_dssp SEEEEEEEEEESSGGHHHHHHHTTEEEEEEEEHHTTEEEEEEEEEE--TTEEEEEEEEEEE--EEETTEEEEEEEE
T ss_pred CceeEEEEEEeCCcchhhhccccccEEEEEEeecCCCeEEEEEEec--CCEEEEEEEeEEe--cccCCccceeeec
Confidence 4899999877 3444545689999999878889999888765 4554444434443 3467999999754
No 10
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=96.53 E-value=0.0043 Score=43.82 Aligned_cols=60 Identities=23% Similarity=0.244 Sum_probs=42.1
Q ss_pred ceeeEEEeec-----CCccccCceeeeEEEeecCceeEEEEeeeeeeecceeeccc-------cceeEEeEeee
Q psy12445 18 MGIWYEAERY-----FAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIE-------GEIRYMGIWYE 79 (150)
Q Consensus 18 ~G~Wyeiar~-----p~~~~~~~~c~~a~Ytl~~~g~I~V~N~~~~~i~G~c~~~~-------~~~r~~g~wy~ 79 (150)
+|+||+||.. +..+.....|....+++..++.+.+..... ..+.|.... .+++|...+.+
T Consensus 1 ~G~Wy~v~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~~~~~~~~g~~~~~~~~ 72 (144)
T PF00061_consen 1 AGKWYEVALASDCPEFEEEKKELKCFPVVIKPLANGNLPVTFTSK--RGGQCVTITVTFKKTEEPGKFTVEFSE 72 (144)
T ss_dssp SEEEEEEEEEESSGGHHHHHHHTTEEEEEEEEHHTTEEEEEEEEE--ETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred CceeEEEEEEeCCcchhhhccccccEEEEEEeecCCCeEEEEEEe--cCCEEEEEEEeEEecccCCccceeeec
Confidence 6999999987 455555679999999987787888887663 334454332 55677766543
No 11
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=86.76 E-value=4.8 Score=31.06 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=43.8
Q ss_pred cceeEEeEeeeccccceeecccceeeeEEEEecCCceEEEE-EeEEecCCCCeEEEEEEEE-EeCCCCCcEEEE
Q psy12445 69 GEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVV-NTQTSSITGITSNIEGEIR-VFERSDTSKFFI 140 (150)
Q Consensus 69 ~~~r~~g~wy~iar~~~~fe~~~~C~~a~Yt~~~dg~i~V~-n~~~~~~~g~~~~~~G~a~-~~~~~~~akl~V 140 (150)
+++.|.|+||-++.+-..|. --.|..-+++. +++++-.. |-++..++|......-.-+ +.|++.||.|.-
T Consensus 35 d~~~f~G~Wyit~GlNp~fD-~FdCQ~h~F~~-~~~kl~~~~~wRi~~pdggf~~r~~~q~fvqD~~~Pg~lyn 106 (198)
T PF07137_consen 35 DPKDFEGKWYITAGLNPTFD-TFDCQLHEFHT-EKDKLVGKINWRIPTPDGGFFTRSAVQRFVQDPSQPGILYN 106 (198)
T ss_dssp -GGGG-EEEEEEEESSTTTT-TTSEEEEEEEE-ETTEEEEEEEEEEE-TTS-EEEEEEEEEEEE-SS-TTEEEE
T ss_pred CHhHcCceEEEecCCCCCcc-ccccccceeec-CCCeEEEEEEEEeecCCCCceeccceeEeeeCCCCCceEEe
Confidence 88889999999988865554 23799989987 44566443 3467778887655444444 447888887653
No 12
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=78.03 E-value=15 Score=28.44 Aligned_cols=39 Identities=15% Similarity=0.368 Sum_probs=26.0
Q ss_pred eeecccccccceeeEEEeecCCccccCceeeeEEEeecCc
Q psy12445 8 FAYTETSLRYMGIWYEAERYFAVFEFAGKCVSANYTNEGN 47 (150)
Q Consensus 8 ~~~~~d~~ry~G~Wyeiar~p~~~~~~~~c~~a~Ytl~~~ 47 (150)
.|+.||++.+.|+||-.+-+=..|. --.|..-+++...+
T Consensus 30 ~v~~Fd~~~f~G~Wyit~GlNp~fD-~FdCQ~h~F~~~~~ 68 (198)
T PF07137_consen 30 LVKSFDPKDFEGKWYITAGLNPTFD-TFDCQLHEFHTEKD 68 (198)
T ss_dssp S-S---GGGG-EEEEEEEESSTTTT-TTSEEEEEEEEETT
T ss_pred hhccCCHhHcCceEEEecCCCCCcc-ccccccceeecCCC
Confidence 5889999999999999998866665 23787777776554
No 13
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=68.81 E-value=2.5 Score=29.56 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=9.9
Q ss_pred cccceeeEEEee
Q psy12445 15 LRYMGIWYEAER 26 (150)
Q Consensus 15 ~ry~G~Wyeiar 26 (150)
..|.|.|+||+.
T Consensus 39 ~ly~GeWFEI~e 50 (111)
T PF07215_consen 39 ALYAGEWFEITE 50 (111)
T ss_pred cccccccEEecc
Confidence 349999999974
No 14
>PLN02372 violaxanthin de-epoxidase
Probab=66.98 E-value=28 Score=30.10 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=44.9
Q ss_pred cceeEEeEeeeccccceeecccceeeeEEEEecCCceEEEEE-eEEecCCCCeEEEEEEEE-EeCCCCCcEEE
Q psy12445 69 GEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVN-TQTSSITGITSNIEGEIR-VFERSDTSKFF 139 (150)
Q Consensus 69 ~~~r~~g~wy~iar~~~~fe~~~~C~~a~Yt~~~dg~i~V~n-~~~~~~~g~~~~~~G~a~-~~~~~~~akl~ 139 (150)
+++-+.|+||-++.+-..|. --.|..-+|...+++++-..- -.++.++|........=. +.|+..|+.|.
T Consensus 202 ~~~~f~GsWyivaGlNP~yD-~FdCQ~h~F~~~~~~kl~~nl~wRv~tpdGgF~~Rs~vq~fvqd~~~P~il~ 273 (455)
T PLN02372 202 DTADFNGRWYITSGLNKTFD-TFDCQLHEFTAEDPDKLVGNLNWRINTPDGGFFTRSAVQRFVQDPNQPGILY 273 (455)
T ss_pred CccccCccEEEecCCCCCCC-cccccceeeecCCCCceEEeeEEEEecCCCceEeecceeeeeccCCCCceEE
Confidence 67788999999988754443 236988888877677763322 256677887554322222 33677777554
No 15
>PF11032 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs). ApoM is important in the formation of pre-ss-HDL and also in increasing cholesterol efflux from macrophage foam cells []. Lipoproteins consist of lipids solubilized by apolipoproteins. ApoM lacks an external amphipathic motif and is uniquely secreted to plasma without cleavage of its terminal signal peptide []. ; PDB: 2XKL_A 2WEX_A 2YG2_B 2WEW_A.
Probab=66.66 E-value=56 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=14.2
Q ss_pred eeeccccc----ccceeeEEEee
Q psy12445 8 FAYTETSL----RYMGIWYEAER 26 (150)
Q Consensus 8 ~~~~~d~~----ry~G~Wyeiar 26 (150)
++..+|-+ .|+|+||=||-
T Consensus 30 ~~~~~d~~q~p~~~LGkW~fiAg 52 (186)
T PF11032_consen 30 VTSGLDNTQFPSPLLGKWYFIAG 52 (186)
T ss_dssp EEECCTCCCCCHCCSCEEEEEEE
T ss_pred ccccCCcccCCcccceeEEEEEE
Confidence 45667755 45999999983
No 16
>PHA02122 hypothetical protein
Probab=53.83 E-value=31 Score=21.37 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=18.9
Q ss_pred eeecccceeeeEEEEecCCceEEEEEe
Q psy12445 85 AVFEFAGKCVSANYTNEGNGIYRVVNT 111 (150)
Q Consensus 85 ~~fe~~~~C~~a~Yt~~~dg~i~V~n~ 111 (150)
+.|...++|+..+|.+.-+|.+-+..+
T Consensus 35 hs~~~~gd~v~vn~e~~~ng~l~i~qt 61 (65)
T PHA02122 35 HSFKDDGDEVIVNFELVVNGKLIINQT 61 (65)
T ss_pred EeeccCCCEEEEEEEEEECCEEEEeeE
Confidence 344557789988998888887755433
No 17
>PF03973 Triabin: Triabin; InterPro: IPR005657 This family contains saliva proteins from haematophagous insects that counteract vertebrate host haemostasis events such as coagulation, vasoconstriction and platelet aggregation []. These include: Triabin, a serine-protease inhibitor. It forms a non-covalent complex with thrombin at a molecular ratio of 1:1, and inhibits thrombin-induced platelet aggregation. Pallidipin, an anticollagen induced platelet aggregation factor also found in Triatoma pallidipennis salivary homogenates. Procalin, the major allergen of Triatoma protracta saliva. All members of this family belong to MEROPS proteinase inhibitor family I59, clan IZ. ; GO: 0005488 binding, 0030682 evasion or tolerance of host defense response; PDB: 3EBK_B 1AVG_I.
Probab=52.28 E-value=5 Score=29.49 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=22.1
Q ss_pred cceeeeecccccccc-eeeEEEeecCCccccCceeeeEEEeecCceeEEEE
Q psy12445 4 SHLRFAYTETSLRYM-GIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVV 53 (150)
Q Consensus 4 ~~~~~~~~~d~~ry~-G~Wyeiar~p~~~~~~~~c~~a~Ytl~~~g~I~V~ 53 (150)
......++||++||. |+||.--. ...- ....|-.=.-+.. +|.+.++
T Consensus 13 ~~~~~m~nFd~~kFF~g~WyvTH~-k~~t-~~tvCr~y~t~~~-~G~~~~v 60 (148)
T PF03973_consen 13 QNYKAMSNFDPTKFFKGTWYVTHA-KNGT-SSTVCRKYKTSQK-DGKTKIV 60 (148)
T ss_dssp GC--S-TT--HHHHCSCEEEEECC-SSSG-GCCEEEEEEECTT-T--EEEE
T ss_pred cCCCcccCCChHHccCccEEEEec-cCCC-CCceeeEEEEEEc-CCcEEEE
Confidence 456778999999966 99997432 1211 1236655444443 4444444
No 18
>KOG0277|consensus
Probab=32.12 E-value=1.6e+02 Score=24.20 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=30.6
Q ss_pred ecCCccccCceeeeEE-EeecCceeEEEEeeeeeeecceeeccc-cceeEEeEeee
Q psy12445 26 RYFAVFEFAGKCVSAN-YTNEGNGIYRVVNTQTSSITGITSNIE-GEIRYMGIWYE 79 (150)
Q Consensus 26 r~p~~~~~~~~c~~a~-Ytl~~~g~I~V~N~~~~~i~G~c~~~~-~~~r~~g~wy~ 79 (150)
+|-++++....|++++ |.+...|.+.+....-..-.+.|.... .-+-|.+.|-|
T Consensus 15 qfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse 70 (311)
T KOG0277|consen 15 QFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSE 70 (311)
T ss_pred EecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecC
Confidence 4555556555666655 999999998887543111122333333 33456666653
No 19
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.92 E-value=43 Score=25.90 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=28.8
Q ss_pred eecccccccceeeEEEeecCCccccCceeeeEEEeec
Q psy12445 9 AYTETSLRYMGIWYEAERYFAVFEFAGKCVSANYTNE 45 (150)
Q Consensus 9 ~~~~d~~ry~G~Wyeiar~p~~~~~~~~c~~a~Ytl~ 45 (150)
+..+.+..|.|+|--+-.+|..|.- .|.|....+.
T Consensus 23 ~~~i~l~d~~gkw~VLff~P~DFTf--VCpTEi~af~ 57 (194)
T COG0450 23 FEEITLSDYYGKWVVLFFYPADFTF--VCPTEIIAFA 57 (194)
T ss_pred eeEEechhhcCcEEEEEeccCCCCc--cCcchHHHHH
Confidence 3578889999999999999999998 8877665444
No 20
>PF12141 DUF3589: Protein of unknown function (DUF3589); InterPro: IPR021988 This family of proteins is found in eukaryotes. Proteins in this family are typically between 541 and 717 amino acids in length. The function of this family is not known,
Probab=25.72 E-value=1.2e+02 Score=26.78 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=52.8
Q ss_pred eeEEeEeeeccccceeecc-cce--eeeEEEEecC---CceEEEEEeEEecCCCCeEEEEEE-EEEeCC-----CCCcEE
Q psy12445 71 IRYMGIWYEAERYFAVFEF-AGK--CVSANYTNEG---NGIYRVVNTQTSSITGITSNIEGE-IRVFER-----SDTSKF 138 (150)
Q Consensus 71 ~r~~g~wy~iar~~~~fe~-~~~--C~~a~Yt~~~---dg~i~V~n~~~~~~~g~~~~~~G~-a~~~~~-----~~~akl 138 (150)
..+.-.||..+....+.+. ++. =.+.-|+..+ .-.+.+...++- |..+.++.|+ ..++.. .....-
T Consensus 59 ~~i~k~WfrF~GSSVWLe~ygVh~mvSRViYS~~g~k~~P~iSllyaQvF--DknWnEL~~~~L~vP~~~~~~~~~~~~~ 136 (498)
T PF12141_consen 59 DIIEKHWFRFAGSSVWLEQYGVHLMVSRVIYSPKGIKNQPQISLLYAQVF--DKNWNELKNVELVVPFNDPKKENKSSYK 136 (498)
T ss_pred hHHHhhhhhhcCceEecccCCEEEEEEEEEEcCCCCCCCCEEEEEEEEec--cCCchhccCceEEcccccccccccccce
Confidence 3445689999999999987 332 2567898765 346777777753 8889999994 444322 122233
Q ss_pred EEEeCCCCCCCC
Q psy12445 139 FIKFPSLPNFPV 150 (150)
Q Consensus 139 ~V~f~~~p~~~~ 150 (150)
.++||.+.+||.
T Consensus 137 ~~~fP~~LpIPf 148 (498)
T PF12141_consen 137 SMTFPSFLPIPF 148 (498)
T ss_pred EeeCCeEEEecc
Confidence 488999888884
No 21
>KOG4802|consensus
Probab=21.24 E-value=1.7e+02 Score=25.51 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=12.6
Q ss_pred ceeeccccc--eeEEeEee
Q psy12445 62 GITSNIEGE--IRYMGIWY 78 (150)
Q Consensus 62 G~c~~~~~~--~r~~g~wy 78 (150)
-.||...|+ .+|...|-
T Consensus 275 ~w~P~~sdlPv~~Yki~Ws 293 (516)
T KOG4802|consen 275 VWCPSKSDLPVEKYKITWS 293 (516)
T ss_pred EeCCCCCCCcceeeEEEee
Confidence 468877754 78999885
No 22
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=21.10 E-value=1.1e+02 Score=16.75 Aligned_cols=21 Identities=10% Similarity=-0.057 Sum_probs=15.4
Q ss_pred eeeeecccccccceeeEEEeecC
Q psy12445 6 LRFAYTETSLRYMGIWYEAERYF 28 (150)
Q Consensus 6 ~~~~~~~d~~ry~G~Wyeiar~p 28 (150)
+.-|..+|++ .++|-+++.+|
T Consensus 27 ~~~v~~yd~~--~~~W~~~~~mp 47 (47)
T PF01344_consen 27 TNSVEVYDPE--TNTWEELPPMP 47 (47)
T ss_dssp EEEEEEEETT--TTEEEEEEEES
T ss_pred eeeEEEEeCC--CCEEEEcCCCC
Confidence 4456666666 68999998876
No 23
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=20.65 E-value=3.1e+02 Score=19.22 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=11.9
Q ss_pred eeeccc-cceeEEeEeee
Q psy12445 63 ITSNIE-GEIRYMGIWYE 79 (150)
Q Consensus 63 ~c~~~~-~~~r~~g~wy~ 79 (150)
.+++.. |..++.|+|--
T Consensus 12 s~~~~k~d~~~L~GkW~~ 29 (111)
T TIGR03066 12 DDKDEKIDAKKLVGKWET 29 (111)
T ss_pred CCccccccccceeEEEEE
Confidence 345444 77789999973
Done!