RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12445
(150 letters)
>gnl|CDD|225582 COG3040, Blc, Bacterial lipocalin [Cell envelope biogenesis, outer
membrane].
Length = 174
Score = 34.3 bits (79), Expect = 0.009
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 63 ITSNIEGEIRYMGIWYEAERYFAVFEFAGKCVSANYT-NEGNGIYRVVNTQTSSITGITS 121
+N + + RY+G WYE R FE V+A Y+ + GI V+N + G S
Sbjct: 27 PVNNFDLQ-RYLGKWYEVARLPMRFEKGCVQVTATYSLRDDGGI-SVINRCRTGDGGKWS 84
Query: 122 NIEGEIRVFERSDTSKFFIKFP 143
IEG+ ++ + + +K + F
Sbjct: 85 QIEGKAKIVDNATRAKLKVSFF 106
Score = 30.1 bits (68), Expect = 0.27
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYT-NEGNGIYRVVNTQTSSITGITSNIEGE 70
RY+G WYE R FE V+A Y+ + GI V+N + G S IEG+
Sbjct: 35 RYLGKWYEVARLPMRFEKGCVQVTATYSLRDDGGI-SVINRCRTGDGGKWSQIEGK 89
>gnl|CDD|182489 PRK10477, PRK10477, outer membrane lipoprotein Blc; Provisional.
Length = 177
Score = 33.9 bits (78), Expect = 0.015
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVN 54
RY+G WYE R+ FE + V+A Y+ +G V+N
Sbjct: 38 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVIN 76
Score = 33.9 bits (78), Expect = 0.015
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVN 110
RY+G WYE R+ FE + V+A Y+ +G V+N
Sbjct: 38 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVIN 76
>gnl|CDD|116798 pfam08212, Lipocalin_2, Lipocalin-like domain. Lipocalins are
transporters for small hydrophobic molecules, such as
lipids, steroid hormones, bilins, and retinoids. The
structure is an eight-stranded beta barrel.
Length = 140
Score = 33.0 bits (76), Expect = 0.019
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
RYMG WYE R FE V+A YT +G V N + G EG+ +V +
Sbjct: 5 RYMGTWYEIARLPMRFERGCVDVTATYTLRDDGTIAVTNR-CRTPDGKWKTAEGKAKVAD 63
Query: 132 RSDTSKFFIKFP 143
+K + F
Sbjct: 64 PGSNAKLKVSFF 75
Score = 31.9 bits (73), Expect = 0.065
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNT 55
RYMG WYE R FE V+A YT +G V N
Sbjct: 5 RYMGTWYEIARLPMRFERGCVDVTATYTLRDDGTIAVTNR 44
>gnl|CDD|182391 PRK10341, PRK10341, DNA-binding transcriptional activator TdcA;
Provisional.
Length = 312
Score = 29.8 bits (67), Expect = 0.46
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 79 EAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFERSDTSKF 138
+ E YF V K T G V+ +++ SIT N+ EI
Sbjct: 44 DIEDYFGVELIVRKNTGVTLTPAGQ----VLLSRSESITREMKNMVNEINGMSSEAVVDV 99
Query: 139 FIKFPSLPNFPV 150
FPSL F
Sbjct: 100 SFGFPSLIGFTF 111
>gnl|CDD|233216 TIGR00970, leuA_yeast, 2-isopropylmalate synthase, yeast type. A
larger family of homologous proteins includes
homocitrate synthase, distinct lineages of
2-isopropylmalate synthase, several distinct,
uncharacterized, orthologous sets in the Archaea, and
other related enzymes. This model describes a family of
2-isopropylmalate synthases as found in yeasts and in a
minority of studied bacteria [Amino acid biosynthesis,
Pyruvate family].
Length = 564
Score = 29.1 bits (65), Expect = 0.94
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 43 TNEGNGIYRVVNTQTSSITGITSNIEG-EIRYMGIW-YEAERYFAVFEFAGKCVSANYTN 100
T+ G + R + + SS+ ++ EG E+ I AE Y A E + Y
Sbjct: 396 TDHGLDLPRRLQIEFSSVVQDIADGEGGELSPKEISDLFAEEYLAPVEPLERISQHVYAA 455
Query: 101 EGNGIYRVVNTQTSSITGITSNIEG 125
+ +G T T I G+ ++IEG
Sbjct: 456 DDDGTGTTSITATVKINGVETDIEG 480
Score = 28.0 bits (62), Expect = 2.2
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 24 AERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEG 69
AE Y A E + Y + +G T T I G+ ++IEG
Sbjct: 435 AEEYLAPVEPLERISQHVYAADDDGTGTTSITATVKINGVETDIEG 480
>gnl|CDD|149199 pfam07984, DUF1693, Domain of unknown function (DUF1693). This
family contains many hypothetical proteins. It also
includes four nematode prion-like proteins. This domain
has been identified as part of the
nucleotidyltransferase superfamily.
Length = 320
Score = 28.2 bits (63), Expect = 1.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 124 EGEIRVFERSDTSKFFIKFPSL 145
E EI+ ER S+FFI FP +
Sbjct: 244 ETEIKTLERYMCSRFFIDFPDI 265
>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 342
Score = 27.5 bits (61), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 61 TGITSNIEGEIRYMGIWYEAERYFA 85
T +S+ EGE+ M +W++ E Y+A
Sbjct: 299 TSSSSSREGEVHKMVLWFDVECYYA 323
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 27.4 bits (60), Expect = 3.2
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 31 FEFAGKCVSANYTNEGNGIYRVVNTQTSSI 60
+F+ +S + + EG I+RV++T ++
Sbjct: 287 SDFSLHILSLDASTEGTYIWRVIHTANKNV 316
Score = 27.4 bits (60), Expect = 3.2
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 87 FEFAGKCVSANYTNEGNGIYRVVNTQTSSI 116
+F+ +S + + EG I+RV++T ++
Sbjct: 287 SDFSLHILSLDASTEGTYIWRVIHTANKNV 316
>gnl|CDD|233955 TIGR02627, rhamnulo_kin, rhamnulokinase. This model describes
rhamnulokinase, an enzyme that catalyzes the second step
in rhamnose catabolism.
Length = 454
Score = 27.0 bits (60), Expect = 3.8
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 21/55 (38%)
Query: 40 ANYTNEG--NGIYRVVNTQTSSITGITSNIEGEIRYMGIWY--EAERYFAVFEFA 90
AN TNEG +G YRV+ NI MG+W R + +
Sbjct: 273 ANITNEGGADGRYRVLK-----------NI------MGLWLLQRVCRERDINDLP 310
>gnl|CDD|146915 pfam04513, Baculo_PEP_C, Baculovirus polyhedron envelope protein,
PEP, C terminus. Polyhedra are large crystalline
occlusion bodies containing nucleopolyhedrovirus
virions, and surrounded by an electron-dense structure
called the polyhedron envelope or polyhedron calyx. The
polyhedron envelope (associated) protein PEP is thought
to be an integral part of the polyhedron envelope. PEP
is concentrated at the surface of polyhedra, and is
thought to be important for the proper formation of the
periphery of polyhedra. It is thought that PEP may
stabilise polyhedra and protect them from fusion or
aggregation.
Length = 140
Score = 25.8 bits (57), Expect = 6.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 43 TNEGNGIYRVVNTQTSSITGITSNIEG 69
NE + ++N TSS+T I S +
Sbjct: 84 RNELTNLNSILNNLTSSVTNINSTLNN 110
Score = 25.8 bits (57), Expect = 6.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 99 TNEGNGIYRVVNTQTSSITGITSNIEG 125
NE + ++N TSS+T I S +
Sbjct: 84 RNELTNLNSILNNLTSSVTNINSTLNN 110
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 26.0 bits (58), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 33 FAGKCVSANYTNEGNGIYRV 52
AG+C+SA T+ G RV
Sbjct: 361 VAGRCISA--THIAFGSTRV 378
Score = 26.0 bits (58), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 89 FAGKCVSANYTNEGNGIYRV 108
AG+C+SA T+ G RV
Sbjct: 361 VAGRCISA--THIAFGSTRV 378
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.401
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,392,929
Number of extensions: 633368
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 25
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)