RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12445
(150 letters)
>1kt6_A RBP, plasma retinol-binding protein; transport protein; HET: RTL;
1.10A {Bos taurus} SCOP: b.60.1.1 PDB: 1erb_A* 1fem_A*
1fen_A* 1hbp_A* 1fel_A* 1kt4_A* 1kt3_A* 1kt7_A* 1hbq_A
1aqb_A* 1kt5_A* 1rlb_E* 1rbp_A* 1brq_A 1brp_A* 1jyd_A
1jyj_A 2wqa_E* 3bsz_E* 1qab_E* ...
Length = 183
Score = 69.1 bits (168), Expect = 1e-15
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSIT-GITSNIEGEIRVF 130
R+ G WY + F + A ++ + NG + +
Sbjct: 19 RFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGTFT 78
Query: 131 ERSDTSKFFIKFPSLPNFP 149
+ D +KF +K+ + +F
Sbjct: 79 DTEDPAKFKMKYWGVASFL 97
Score = 56.0 bits (134), Expect = 1e-10
Identities = 8/58 (13%), Positives = 16/58 (27%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRY 73
R+ G WY + F + A ++ + NG + +
Sbjct: 19 RFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGT 76
>3fmz_A Retinol-binding protein 4; disease mutation, secreted, sensory
transduction, transport, vision, vitamin A, transport
protein; HET: 2T1; 2.90A {Homo sapiens}
Length = 212
Score = 66.4 bits (161), Expect = 3e-14
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNT-QTSSITGITSNIEGEIRVF 130
R+ G WY + F + A ++ + G + + +
Sbjct: 48 RFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFT 107
Query: 131 ERSDTSKFFIKFPSLPNFP 149
+ D +KF +K+ + +F
Sbjct: 108 DTEDPAKFKMKYWGVASFL 126
Score = 54.8 bits (131), Expect = 4e-10
Identities = 7/47 (14%), Positives = 14/47 (29%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITG 62
R+ G WY + F + A ++ + G +
Sbjct: 48 RFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLN 94
>1z24_A Insecticyanin A form; blue biliprotein, INS-A, chromophore
binding., lipid binding protein; HET: BLV; 2.60A
{Manduca sexta} SCOP: b.60.1.1
Length = 189
Score = 58.7 bits (141), Expect = 1e-11
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRV-- 129
+ G W+E + E GKC A Y +G V N+ S G+ +EG++ +
Sbjct: 22 AFAGAWHEIAKLPLENENQGKCTIAEYKYDGKKA-SVYNSFVS--NGVKEYMEGDLEIAP 78
Query: 130 -FERSDTSKFFIKFPSLPNFP 149
+ + K+ + F
Sbjct: 79 DAKYTKQGKYVMTFKFGQRVV 99
Score = 54.1 bits (129), Expect = 5e-10
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
+ G W+E + E GKC A Y +G V N+ S G+ +EG++
Sbjct: 22 AFAGAWHEIAKLPLENENQGKCTIAEYKYDGKKA-SVYNSFVS--NGVKEYMEGDLEIAP 78
Query: 76 IWYEAE--RYFAVFEFAGKCVSANYT 99
+ +Y F+F + V+
Sbjct: 79 DAKYTKQGKYVMTFKFGQRVVNLVPW 104
>1kxo_A DIGA16; lipocalin, anticalin, genetical engineering, digoxigenin,
ligand binding protein; 1.80A {Pieris brassicae} SCOP:
b.60.1.1 PDB: 1lke_A* 1lnm_A* 1n0s_A* 1t0v_A 1bbp_A*
Length = 184
Score = 57.9 bits (139), Expect = 2e-11
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
+Y G W++ Y GKC A YT EG + ++ S I G EG
Sbjct: 21 QYHGKWWQVAAYPDHITKYGKCGWAEYTPEGKSV---KVSRYSVIHGKEYFSEGTAYPVG 77
Query: 132 RSDTSKFFIKFPSLPNFP 149
S K + +
Sbjct: 78 DSKIGKIYHSYTIGGVTQ 95
Score = 49.0 bits (116), Expect = 5e-08
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
+Y G W++ Y GKC A YT EG + ++ S I G EG +G
Sbjct: 21 QYHGKWWQVAAYPDHITKYGKCGWAEYTPEGKSV---KVSRYSVIHGKEYFSEGTAYPVG 77
Query: 76 IWYEAERYFAVFEFAGKCVSANY 98
+ + + + G +
Sbjct: 78 -DSKIGKIYHSYTIGGVTQEGVF 99
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin,
bathochromic, coloration; HET: AXT D12 EPE; 3.23A
{Homarus gammarus} SCOP: b.60.1.1
Length = 174
Score = 56.7 bits (136), Expect = 6e-11
Identities = 14/72 (19%), Positives = 26/72 (36%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
RY G WY+ ++ +C+ +NY N V T + I+ ++ +
Sbjct: 25 RYAGRWYQTHIIENAYQPVTRCIHSNYEYSTNDYGFKVTTAGFNPNDEYLKIDFKVYPTK 84
Query: 132 RSDTSKFFIKFP 143
+ I P
Sbjct: 85 EFPAAHMLIDAP 96
Score = 52.4 bits (125), Expect = 2e-09
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
RY G WY+ ++ +C+ +NY N V T + I+ ++
Sbjct: 25 RYAGRWYQTHIIENAYQPVTRCIHSNYEYSTNDYGFKVTTAGFNPNDEYLKIDFKVYPTK 84
Query: 76 IWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVV 109
+ A + + + Y V
Sbjct: 85 EFPAA--HMLIDAPSVFAAPYEVIETDYETYSCV 116
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel,
bilin-binding protein, transport protein; HET: STR;
1.80A {Homo sapiens} PDB: 2hzr_A
Length = 174
Score = 55.4 bits (133), Expect = 2e-10
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
+Y G WYE E+ FE G+C+ ANY+ NG +V+N + + G + IEGE
Sbjct: 19 KYPGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA-DGTVNQIEGEATPVN 76
Query: 132 RSDTSKFFIKFPSLP 146
++ +K +KF
Sbjct: 77 LTEPAKLEVKFSWFM 91
Score = 46.6 bits (110), Expect = 3e-07
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
+Y G WYE E+ FE G+C+ ANY+ NG +V+N + + G + IEGE +
Sbjct: 19 KYPGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA-DGTVNQIEGEATPVN 76
>1i4u_A Crustacyanin; lipocalin fold, antiparallel beta barrel, transport
protein; 1.15A {Synthetic} SCOP: b.60.1.1 PDB: 1obq_A
1obu_A 1s2p_A 1h91_A 1gka_A 1s44_A
Length = 181
Score = 54.5 bits (130), Expect = 4e-10
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
Y G+WY+ ++ KCV Y+ +G V+ + + G G++
Sbjct: 30 SYAGVWYQFALTNNPYQLIEKCVRNEYSFDGKQF--VIESTGIAYDGNLLKRNGKLYPNP 87
Query: 132 RSDTSKFFIKFPSLPNFP 149
I + + P
Sbjct: 88 -FGEPHLSIDYENSFAAP 104
Score = 51.8 bits (123), Expect = 4e-09
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEI 71
Y G+WY+ ++ KCV Y+ +G V+ + + G G++
Sbjct: 30 SYAGVWYQFALTNNPYQLIEKCVRNEYSFDGKQF--VIESTGIAYDGNLLKRNGKL 83
>3ebw_A PER A 4 allergen; beta barrel, cockroach; HET: PE4; 2.80A
{Periplaneta americana}
Length = 163
Score = 52.0 bits (124), Expect = 2e-09
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 72 RYMGIWYEAERYFAVFE-FAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVF 130
+Y+G WYE R E C YT + NG+ +V + + I I V
Sbjct: 17 KYVGTWYELFRTPNSDEEDFTNCEYDKYTLDENGVIQVTSVAYT--NSIRGFITSTGTVP 74
Query: 131 ERSDTSKFFIKFPSLP 146
++ +
Sbjct: 75 SWTEDTFDIAYGDDET 90
Score = 48.9 bits (116), Expect = 3e-08
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 16 RYMGIWYEAERYFAVFE-FAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYM 74
+Y+G WYE R E C YT + NG+ +V + ++ G +
Sbjct: 17 KYVGTWYELFRTPNSDEEDFTNCEYDKYTLDENGVIQVTSVAYTNSIRGFITSTGTVPSW 76
Query: 75 GIWYEAERYFAVFEFAG 91
Y ++
Sbjct: 77 TEDTFDIAYGDDETWSS 93
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding
protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB:
2aco_A* 3mbt_A
Length = 177
Score = 49.0 bits (116), Expect = 3e-08
Identities = 19/78 (24%), Positives = 31/78 (39%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
RY+G WYE R+ FE + V+A Y+ +G V+N + G+ EG+
Sbjct: 38 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTG 97
Query: 132 RSDTSKFFIKFPSLPNFP 149
+ + F
Sbjct: 98 APTRAALKVSFFGPFYGG 115
Score = 46.3 bits (109), Expect = 4e-07
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
RY+G WYE R+ FE + V+A Y+ +G V+N + G+ EG+ + G
Sbjct: 38 RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTG 97
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL,
enterobactin, glycoprotein, pyrroli carboxylic acid,
secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A*
3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A
3t1d_A* 3by0_A*
Length = 198
Score = 36.6 bits (84), Expect = 0.001
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 4/83 (4%)
Query: 72 RYMGIWYE----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEI 127
++ G WY + K + Y + + Y V +
Sbjct: 46 QFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVP 105
Query: 128 RVFERSDTSKFFIKFPSLPNFPV 150
T +P L +F V
Sbjct: 106 GSQPGEFTLGNIKSYPGLTSFLV 128
Score = 36.3 bits (83), Expect = 0.002
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 12/87 (13%)
Query: 16 RYMGIWYE----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNT-------QTSSITGIT 64
++ G WY + K + Y + + Y V + T +
Sbjct: 46 QFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVP 105
Query: 65 SNIEGEIRY-MGIWYEAERYFAVFEFA 90
+ GE Y F V +
Sbjct: 106 GSQPGEFTLGNIKSYPGLTSFLVRVVS 132
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus
norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Length = 164
Score = 36.1 bits (83), Expect = 0.001
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 16 RYMGIWYE----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNI---- 67
+++G WYE ++ + + A + + T S + +
Sbjct: 10 KFLGFWYEIAFASKMGTPGLAHKEEKMGAMVVELKENLLALTTTYYSEDHCVLEKVTATE 69
Query: 68 -EGEIRYMGIWYEAERYFAVFE 88
+G ++ ++ V
Sbjct: 70 GDGPAKFQVTRLSGKKEVVVEA 91
>3bx8_A Engineered human lipocalin 2; protein design, ligand binding
protein, de novo protein, protein binding; HET: 1PE
PE5; 2.00A {Homo sapiens} PDB: 3bx7_A* 3dtq_A 3dsz_A*
1l6m_A* 3tf6_A* 1x71_A* 1x89_A* 1x8u_A* 3fw4_A 3fw5_A
3k3l_A* 3pec_A* 3ped_A* 3tzs_A* 1ngl_A 1dfv_A* 1qqs_A*
Length = 178
Score = 35.8 bits (82), Expect = 0.002
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 16 RYMGIWYE----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNT 55
++ G WY R + + Y + + Y V +
Sbjct: 26 QFHGKWYVVGLAGNRILRDDQHPMNMYATIYELKEDKSYNVTSV 69
Score = 35.8 bits (82), Expect = 0.002
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 72 RYMGIWYE----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNT 111
++ G WY R + + Y + + Y V +
Sbjct: 26 QFHGKWYVVGLAGNRILRDDQHPMNMYATIYELKEDKSYNVTSV 69
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel,
siderophore binding protein, N-linked glycosyla
secreted, transport protein; HET: NAG BMA MAN; 1.80A
{Mus musculus} PDB: 2k23_A
Length = 190
Score = 35.1 bits (80), Expect = 0.003
Identities = 12/82 (14%), Positives = 19/82 (23%), Gaps = 8/82 (9%)
Query: 72 RYMGIWYE----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEI 127
++ G WY E + S Y + N Y V +
Sbjct: 26 QFRGRWYVVGLAGNAVQKKTEGSFTMYSTIYELQENNSYNVTSILVRDQDQGCRYWIR-- 83
Query: 128 RVFERSDT-SKFFIKFPSLPNF 148
F S +F +
Sbjct: 84 -TFVPSSRAGQFTLGNMHRYPQ 104
Score = 34.4 bits (78), Expect = 0.007
Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 4/61 (6%)
Query: 16 RYMGIWYE----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEI 71
++ G WY E + S Y + N Y V +
Sbjct: 26 QFRGRWYVVGLAGNAVQKKTEGSFTMYSTIYELQENNSYNVTSILVRDQDQGCRYWIRTF 85
Query: 72 R 72
Sbjct: 86 V 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.003
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 36/117 (30%)
Query: 18 MG------------IWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITS 65
MG +W A+ +F Y G I +V ++T
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHF----------KDTY---GFSILDIVINNPVNLTIHFG 1677
Query: 66 NIEG-EIR--YMGIWYEA-----ERYFAVFEFAGKCVSANYTNEG-NG-IYRVVNTQ 112
+G IR Y + +E + +F+ + ++ YT G + TQ
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS-YTFRSEKGLLSATQFTQ 1733
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase;
HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A*
2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Length = 162
Score = 34.2 bits (78), Expect = 0.007
Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 16 RYMGIWYEA-----ERYFAVFEFAGKCVSANYTNEGNGIYRVVNT-------QTSSITGI 63
+++G W+ A + + A + +G + +T +T ++
Sbjct: 10 KFLGRWFSAGLASNSSWLREKKAALSMAKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQ 69
Query: 64 TSNIEGEIRYMGIWYEAERYFAVFE 88
+ G Y + + +V E
Sbjct: 70 PAGSLGSYSYRSPHWGSTYSVSVVE 94
Score = 33.4 bits (76), Expect = 0.013
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 72 RYMGIWYEA-----ERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 126
+++G W+ A + + A + +G + +T T + +
Sbjct: 10 KFLGRWFSAGLASNSSWLREKKAALSMAKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQ 69
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus
norvegicus}
Length = 184
Score = 33.4 bits (76), Expect = 0.013
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 16 RYMGIWYE----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNT 55
++ G W+ Y + N ++V N+
Sbjct: 21 KFQGEWFVLGLADNTYKREHRPLLHSFITLFKLRDNSEFQVTNS 64
Score = 33.4 bits (76), Expect = 0.013
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 72 RYMGIWYE----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNT 111
++ G W+ Y + N ++V N+
Sbjct: 21 KFQGEWFVLGLADNTYKREHRPLLHSFITLFKLRDNSEFQVTNS 64
>3ebk_A Allergen BLA G 4; beta barrel, cockroach, glycoprotein, secreted;
1.90A {Blattella germanica}
Length = 176
Score = 31.3 bits (70), Expect = 0.070
Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 9/75 (12%)
Query: 72 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
R+ G W + Y + + S T IR
Sbjct: 24 RFRGSW--------IIAAGTSEALTQYK-CWIDRFSYDDALVSKYTDSQGKNRTTIRGRT 74
Query: 132 RSDTSKFFIKFPSLP 146
+ + +KF I +
Sbjct: 75 KFEGNKFTIDYNDKG 89
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.097
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 104 GIYRVVNTQTSSITGITSNIEGEIRVF--ERSDTSKFFIKFPSLPN 147
+ V N S + G+++ + G + + + S N
Sbjct: 1040 HVSEVGNCSGSGMGGVSA-LRGMFKDRFKDEPVQNDILQ--ESFIN 1082
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo
sapiens}
Length = 161
Score = 28.4 bits (63), Expect = 0.65
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 16 RYMGIWYEA-----ERYFAVFEFAGKCVSANYTNEGNGIYRVVNT 55
++ G+WY R F + + G V
Sbjct: 16 KFSGLWYVVSMASDCRVFLGKKDHLSMSTRAIRPTEEGGLHVHME 60
Score = 28.4 bits (63), Expect = 0.65
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 72 RYMGIWYEA-----ERYFAVFEFAGKCVSANYTNEGNGIYRVVNT 111
++ G+WY R F + + G V
Sbjct: 16 KFSGLWYVVSMASDCRVFLGKKDHLSMSTRAIRPTEEGGLHVHME 60
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA
ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces
cerevisiae}
Length = 246
Score = 28.2 bits (62), Expect = 1.0
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 14/105 (13%)
Query: 45 EGNGIYRVVNTQTSSITGITSNIEGEIRYMGIWYEAERY-----FAVFEFAGKCVSANYT 99
EG GI+ + + + T E +WYE + + K V +T
Sbjct: 57 EGTGIFSKSSFGINDLRIFTGENIDEESKKYVWYELLKMLTGHKVYIASLDEKVVFTKWT 116
Query: 100 ---NEGNGIYRVVNTQTSSIT------GITSNIEGEIRVFERSDT 135
+ V+ ++S+I + +GEI +FE +D
Sbjct: 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADK 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.401
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,267,026
Number of extensions: 123103
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 39
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)