RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12445
         (150 letters)



>d1kt7a_ b.60.1.1 (A:) Retinol binding protein {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 175

 Score = 57.9 bits (139), Expect = 6e-12
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 72  RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTS-SITGITSNIEGEIRVF 130
           R+ G WY   +      F    + A ++ + NG            +       +      
Sbjct: 19  RFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGTFT 78

Query: 131 ERSDTSKFFIKFPSLPNFP 149
           +  D +KF +K+  + +F 
Sbjct: 79  DTEDPAKFKMKYWGVASFL 97



 Score = 48.3 bits (114), Expect = 2e-08
 Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 1/61 (1%)

Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTS-SITGITSNIEGEIRYM 74
          R+ G WY   +      F    + A ++ + NG            +       +    + 
Sbjct: 19 RFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGTFT 78

Query: 75 G 75
           
Sbjct: 79 D 79


>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus
           gammarus) [TaxId: 6707]}
          Length = 181

 Score = 57.1 bits (137), Expect = 1e-11
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 72  RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
            Y G+WY+       ++   KCV   Y+ +G     V+ +   +  G      G++    
Sbjct: 30  SYAGVWYQFALTNNPYQLIEKCVRNEYSFDGKQF--VIESTGIAYDGNLLKRNGKLYPNP 87

Query: 132 RSDTSKFFIKFPSLPNFP 149
                   I + +    P
Sbjct: 88  -FGEPHLSIDYENSFAAP 104



 Score = 52.9 bits (126), Expect = 6e-10
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 72
           Y G+WY+       ++   KCV   Y+ +G     V+ +   +  G      G++ 
Sbjct: 30 SYAGVWYQFALTNNPYQLIEKCVRNEYSFDGKQF--VIESTGIAYDGNLLKRNGKLY 84


>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia
           coli [TaxId: 562]}
          Length = 167

 Score = 55.2 bits (132), Expect = 7e-11
 Identities = 19/72 (26%), Positives = 31/72 (43%)

Query: 72  RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
           RY+G WYE  R+   FE   + V+A Y+   +G   V+N   +   G+    EG+     
Sbjct: 29  RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTG 88

Query: 132 RSDTSKFFIKFP 143
               +   + F 
Sbjct: 89  APTRAALKVSFF 100



 Score = 52.9 bits (126), Expect = 5e-10
 Identities = 21/72 (29%), Positives = 33/72 (45%)

Query: 16  RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
           RY+G WYE  R+   FE   + V+A Y+   +G   V+N   +   G+    EG+  + G
Sbjct: 29  RYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTG 88

Query: 76  IWYEAERYFAVF 87
               A    + F
Sbjct: 89  APTRAALKVSFF 100


>d1gkab_ b.60.1.1 (B:) Alpha-crustacyanin {European lobster (Homarus
           gammarus) [TaxId: 6707]}
          Length = 174

 Score = 52.2 bits (124), Expect = 9e-10
 Identities = 15/75 (20%), Positives = 28/75 (37%)

Query: 72  RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
           RY G WY+       ++   +C+ +NY    N     V T   +       I+ ++   +
Sbjct: 25  RYAGRWYQTHIIENAYQPVTRCIHSNYEYSTNDYGFKVTTAGFNPNDEYLKIDFKVYPTK 84

Query: 132 RSDTSKFFIKFPSLP 146
               +   I  PS+ 
Sbjct: 85  EFPAAHMLIDAPSVF 99



 Score = 47.2 bits (111), Expect = 5e-08
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 72
          RY G WY+       ++   +C+ +NY    N     V T   +       I+ ++ 
Sbjct: 25 RYAGRWYQTHIIENAYQPVTRCIHSNYEYSTNDYGFKVTTAGFNPNDEYLKIDFKVY 81


>d1z24a1 b.60.1.1 (A:1-189) Insecticyanin {Tobacco hornworm (Manduca
           sexta) [TaxId: 7130]}
          Length = 189

 Score = 51.4 bits (122), Expect = 2e-09
 Identities = 12/78 (15%), Positives = 24/78 (30%)

Query: 72  RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
            + G W+E  +     E  GKC  A Y  +G       +  ++ +              +
Sbjct: 22  AFAGAWHEIAKLPLENENQGKCTIAEYKYDGKKASVYNSFVSNGVKEYMEGDLEIAPDAK 81

Query: 132 RSDTSKFFIKFPSLPNFP 149
            +   K+ + F       
Sbjct: 82  YTKQGKYVMTFKFGQRVV 99



 Score = 47.2 bits (111), Expect = 8e-08
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 16  RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
            + G W+E  +     E  GKC  A Y  +G     V N+  S   G+   +EG++    
Sbjct: 22  AFAGAWHEIAKLPLENENQGKCTIAEYKYDGKKA-SVYNSFVS--NGVKEYMEGDLEIAP 78

Query: 76  IWYEAE--RYFAVFEFAGKCVSANY--TNEGNGIYRVVNTQTSSITG 118
                +  +Y   F+F  + V+            Y +          
Sbjct: 79  DAKYTKQGKYVMTFKFGQRVVNLVPWVLATDYKNYAINYNCDYHPDK 125


>d1kxoa_ b.60.1.1 (A:) Bilin-binding protein {Cabbage butterfly
          (Pieris brassicae) [TaxId: 7116]}
          Length = 171

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
          +Y G W++   Y       GKC  A YT EG  +     ++ S I G     EG    +G
Sbjct: 21 QYHGKWWQVAAYPDHITKYGKCGWAEYTPEGKSV---KVSRYSVIHGKEYFSEGTAYPVG 77

Query: 76 IWYEAERYFAVFEFAGKCVSANY 98
                + +  +   G      +
Sbjct: 78 DSKIG-KIYHSYTIGGVTQEGVF 99


>d1avgi_ b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug (Triatoma
           pallidipennis) [TaxId: 30077]}
          Length = 142

 Score = 42.0 bits (98), Expect = 3e-06
 Identities = 9/78 (11%), Positives = 14/78 (17%), Gaps = 4/78 (5%)

Query: 73  YMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFER 132
           + G WY A            C     +        V               +      + 
Sbjct: 21  FNGTWYLAHGPGV--TSPAVCQKFTTSGSKGFTQIVEIGYNK--FESNVKFQCNQVDNKN 76

Query: 133 SDTSKFFIKFPSLPNFPV 150
            +   F  K      F  
Sbjct: 77  GEQYSFKCKSSDNTEFEA 94



 Score = 35.0 bits (80), Expect = 0.001
 Identities = 6/55 (10%), Positives = 9/55 (16%), Gaps = 4/55 (7%)

Query: 17 YMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEI 71
          + G WY A            C     +        V               +   
Sbjct: 21 FNGTWYLAHGPGV--TSPAVCQKFTTSGSKGFTQIVEIGYNK--FESNVKFQCNQ 71


>d1lf7a_ b.60.1.1 (A:) Complement protein C8gamma {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 171

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 8/75 (10%), Positives = 17/75 (22%), Gaps = 4/75 (5%)

Query: 72  RYMGIWYEAERY---FAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 128
           ++ G W           + E   +  +        G    V+T    + GI   +     
Sbjct: 17  QFAGTWLLVAVGSAGRFLQEQGHRAEATTLHVAPQGTAMAVST-FRKLDGICWQVRQLYG 75

Query: 129 VFERSDTSKFFIKFP 143
                       +  
Sbjct: 76  DTGVLGRFLLQARGA 90



 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 4/60 (6%)

Query: 16 RYMGIWYEAERY---FAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 72
          ++ G W           + E   +  +        G    V+T    + GI   +     
Sbjct: 17 QFAGTWLLVAVGSAGRFLQEQGHRAEATTLHVAPQGTAMAVST-FRKLDGICWQVRQLYG 75


>d1x71a1 b.60.1.1 (A:4-177) Neutrophil gelatinase-associated
           lipocalin (NGAL) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 174

 Score = 39.1 bits (90), Expect = 5e-05
 Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 4/83 (4%)

Query: 72  RYMGIWYEAERY----FAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEI 127
           ++ G WY             +   K  +  Y  + +  Y V +                 
Sbjct: 23  QFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVP 82

Query: 128 RVFERSDTSKFFIKFPSLPNFPV 150
                  T      +P L ++ V
Sbjct: 83  GSQPGEFTLGNIKSYPGLTSYLV 105



 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 22/122 (18%)

Query: 16  RYMGIWYEAERY----FAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEI 71
           ++ G WY             +   K  +  Y  + +  Y V +                 
Sbjct: 23  QFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVL--------------- 67

Query: 72  RYMGIWYEAERYFAVFEFAGKC---VSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 128
                     R F      G+       +Y    + + RVV+T  +    +      + R
Sbjct: 68  FRKKKCDYWIRTFVPGSQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNR 127

Query: 129 VF 130
            +
Sbjct: 128 EY 129


>d1epba_ b.60.1.1 (A:) Retinoic acid-binding protein {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 160

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 4/59 (6%)

Query: 16 RYMGIWYE----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 70
          +++G WYE    ++          + + A        +  +  T  S    +   +   
Sbjct: 8  KFLGFWYEIAFASKMGTPGLAHKEEKMGAMVVELKENLLALTTTYYSEDHCVLEKVTAT 66


>d1pm1x_ b.60.1.1 (X:) Nitrophorin 2 (prolixin-s) {Rhodnius prolixus
           [TaxId: 13249]}
          Length = 180

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 9/72 (12%), Positives = 20/72 (27%)

Query: 73  YMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFER 132
           + G WY         +   +  S+    E +G  +      ++    +    GE ++   
Sbjct: 19  FSGKWYVTHFLDKDPQVTDQYCSSFTPRESDGTVKEALYHYNANKKTSFYNIGEGKLESS 78

Query: 133 SDTSKFFIKFPS 144
                   K   
Sbjct: 79  GLQYTAKYKTVD 90



 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 6/48 (12%), Positives = 15/48 (31%)

Query: 17 YMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGIT 64
          + G WY         +   +  S+    E +G  +      ++    +
Sbjct: 19 FSGKWYVTHFLDKDPQVTDQYCSSFTPRESDGTVKEALYHYNANKKTS 66


>d1exsa_ b.60.1.1 (A:) beta-Lactoglobulin {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 160

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 6/85 (7%), Positives = 16/85 (18%), Gaps = 10/85 (11%)

Query: 72  RYMGIWYE------AERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEG 125
           +  G W+                   K           G   ++  +        +    
Sbjct: 14  KVAGTWHTVAMAVSDVSLLDAKSSPLKAYVEGLKPTPEGDLEILLQKR--ENDKCAQEVL 71

Query: 126 EIRVFERSDTSKFFIKFPSLPNFPV 150
             +  +    + F I         +
Sbjct: 72  LAKKTD--IPAVFKINALDENQLFL 94



 Score = 35.6 bits (81), Expect = 8e-04
 Identities = 4/48 (8%), Positives = 9/48 (18%), Gaps = 6/48 (12%)

Query: 16 RYMGIWYE------AERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQT 57
          +  G W+                   K           G   ++  + 
Sbjct: 14 KVAGTWHTVAMAVSDVSLLDAKSSPLKAYVEGLKPTPEGDLEILLQKR 61


>d1gm6a_ b.60.1.1 (A:) Salivary lipocalin {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 158

 Score = 36.4 bits (83), Expect = 4e-04
 Identities = 6/84 (7%), Positives = 18/84 (21%), Gaps = 10/84 (11%)

Query: 72  RYMGIWYEAERY-----FAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 126
           +  G WY                + +    +     N        +  +           
Sbjct: 10  KIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDFYA--- 66

Query: 127 IRVFERSDTSKFFIKFPSLPNFPV 150
             V ++     + + +     F +
Sbjct: 67  --VCDKVGDGVYTVAYYGENKFRL 88



 Score = 35.2 bits (80), Expect = 0.001
 Identities = 9/81 (11%), Positives = 18/81 (22%), Gaps = 8/81 (9%)

Query: 16 RYMGIWYEAERY-----FAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 70
          +  G WY                + +    +     N        +  +          +
Sbjct: 10 KIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDFYAVCD 69

Query: 71 IRYMG---IWYEAERYFAVFE 88
              G   + Y  E  F + E
Sbjct: 70 KVGDGVYTVAYYGENKFRLLE 90


>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 156

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 6/69 (8%), Positives = 15/69 (21%), Gaps = 6/69 (8%)

Query: 16 RYMGIWYEAERYFAVFEF------AGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEG 69
          +  G WY      +            +           G   ++  +  +       I  
Sbjct: 10 KVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIA 69

Query: 70 EIRYMGIWY 78
          E   +   +
Sbjct: 70 EKTKIPAVF 78


>d1jzua_ b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturnix
           coturnix) [TaxId: 9091]}
          Length = 157

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 11/84 (13%), Positives = 19/84 (22%), Gaps = 9/84 (10%)

Query: 72  RYMGIWYE-----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 126
              G WY         +F   +   K   A  +  G    +V               E  
Sbjct: 8   EIAGKWYVVALASNTEFFLREKDKMKMAMARISFLGEDELKVSYAVPK--PNGCRKWETT 65

Query: 127 IRVFERSDTSKFFIKFPSLPNFPV 150
            +     D  + +    +     V
Sbjct: 66  FKKTS--DDGEVYYSEEAKKKVEV 87



 Score = 32.5 bits (73), Expect = 0.009
 Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 5/47 (10%)

Query: 16 RYMGIWYE-----AERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQT 57
             G WY         +F   +   K   A  +  G    +V     
Sbjct: 8  EIAGKWYVVALASNTEFFLREKDKMKMAMARISFLGEDELKVSYAVP 54


>d1x8qa_ b.60.1.1 (A:) Nitrophorin 4 {Rhodnius prolixus [TaxId:
           13249]}
          Length = 184

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 75  GIWYEAE-RYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRV 129
            +WY  +       +   +  +A      +G  +         T  T     E++V
Sbjct: 21  DVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQV 76



 Score = 34.0 bits (77), Expect = 0.003
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 19 GIWYEAE-RYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 72
           +WY  +       +   +  +A      +G  +         T  T     E++
Sbjct: 21 DVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQ 75


>d1ew3a_ b.60.1.1 (A:) Lipocalin allergen {Horse (Equus caballus),
           equ c 1 [TaxId: 9796]}
          Length = 159

 Score = 32.5 bits (73), Expect = 0.008
 Identities = 15/122 (12%), Positives = 27/122 (22%), Gaps = 12/122 (9%)

Query: 16  RYMGIWYEAERYFAVFEF-----AGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIE-- 68
           +  G WY       V E      + +          N           +       +   
Sbjct: 10  KISGEWYSIFLASDVKEKIEENGSMRVFVDVIRALDNSSLYAEYQTKVNGECTEFPMVFD 69

Query: 69  --GEIRYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGE 126
              E     + Y+    F + EF        Y    +        Q         ++  E
Sbjct: 70  KTEEDGVYSLNYDGYNVFRISEFENDEHIILYLVNFDKDR---PFQLFEFYAREPDVSPE 126

Query: 127 IR 128
           I+
Sbjct: 127 IK 128


>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 158

 Score = 32.2 bits (72), Expect = 0.010
 Identities = 8/74 (10%), Positives = 17/74 (22%), Gaps = 5/74 (6%)

Query: 16 RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRYMG 75
          +  G W+         E   +  S         +  +   + S          GE R + 
Sbjct: 14 KLNGDWFSIVVASNKREKIEENGSMRVF-----MQHIDVLENSLGFKFRIKENGECRELY 68

Query: 76 IWYEAERYFAVFEF 89
          +          +  
Sbjct: 69 LVAYKTPEDGEYFV 82



 Score = 31.8 bits (71), Expect = 0.014
 Identities = 8/79 (10%), Positives = 23/79 (29%)

Query: 72  RYMGIWYEAERYFAVFEFAGKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIRVFE 131
           +  G W+         E   +  S     +   +          I       E  +  ++
Sbjct: 14  KLNGDWFSIVVASNKREKIEENGSMRVFMQHIDVLENSLGFKFRIKENGECRELYLVAYK 73

Query: 132 RSDTSKFFIKFPSLPNFPV 150
             +  ++F+++     F +
Sbjct: 74  TPEDGEYFVEYDGGNTFTI 92


>d1znda1 b.60.1.1 (A:1-157) Major urinary
          protein/alpha-2u-globulin {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 157

 Score = 30.3 bits (67), Expect = 0.054
 Identities = 5/59 (8%), Positives = 10/59 (16%), Gaps = 2/59 (3%)

Query: 16 RYMGIWYEAERYFAVFEFA--GKCVSANYTNEGNGIYRVVNTQTSSITGITSNIEGEIR 72
          +  G W+         E                     +V    +      S +     
Sbjct: 14 KINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVAD 72


>d2ogka1 d.77.1.2 (A:4-144) Hypothetical protein AF2318
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 141

 Score = 24.7 bits (54), Expect = 3.8
 Identities = 4/24 (16%), Positives = 9/24 (37%)

Query: 123 IEGEIRVFERSDTSKFFIKFPSLP 146
             GE+ +    D     ++  + P
Sbjct: 103 YLGEVSLTSGGDPIAVKLRLVTYP 126


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 561,352
Number of extensions: 23547
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 37
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)