BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12446
         (77 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X24|A Chain A, Prl-1 (Ptp4a)
 pdb|1X24|B Chain B, Prl-1 (Ptp4a)
          Length = 180

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
          ELKK+ V  +VRVCE TY    ++ EGI+V D  ++DG  PS
Sbjct: 56 ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS 97


>pdb|1ZCL|A Chain A, Prl-1 C104s Mutant In Complex With Sulfate
 pdb|1ZCL|B Chain B, Prl-1 C104s Mutant In Complex With Sulfate
          Length = 180

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
          ELKK+ V  +VRVCE TY    ++ EGI+V D  ++DG  PS
Sbjct: 56 ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS 97


>pdb|3RZ2|A Chain A, Crystal Of Prl-1 Complexed With Peptide
 pdb|3RZ2|B Chain B, Crystal Of Prl-1 Complexed With Peptide
          Length = 189

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
          ELKK+ V  +VRVCE TY    ++ EGI+V D  ++DG  PS
Sbjct: 56 ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS 97


>pdb|1ZCK|A Chain A, Native Structure Prl-1 (Ptp4a1)
 pdb|1ZCK|B Chain B, Native Structure Prl-1 (Ptp4a1)
 pdb|1ZCK|C Chain C, Native Structure Prl-1 (Ptp4a1)
          Length = 154

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 33 HELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
           ELKK+ V  +VRVCE TY    ++ EGI+V D  ++DG  PS
Sbjct: 29 EELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS 71


>pdb|1RXD|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
          4a1
 pdb|1RXD|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
          4a1
 pdb|1RXD|C Chain C, Crystal Structure Of Human Protein Tyrosine Phosphatase
          4a1
          Length = 159

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 33 HELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
           ELKK+ V  +VRVCE TY    ++ EGI+V D  ++DG  PS
Sbjct: 34 EELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS 76


>pdb|1XM2|A Chain A, Crystal Structure Of Human Prl-1
 pdb|1XM2|B Chain B, Crystal Structure Of Human Prl-1
 pdb|1XM2|C Chain C, Crystal Structure Of Human Prl-1
 pdb|1XM2|D Chain D, Crystal Structure Of Human Prl-1
 pdb|1XM2|E Chain E, Crystal Structure Of Human Prl-1
 pdb|1XM2|F Chain F, Crystal Structure Of Human Prl-1
          Length = 173

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
          ELKK+ V  +VRVCE TY    ++ EGI+V D  ++DG  PS
Sbjct: 36 ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS 77


>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
          Major
 pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
          Major
          Length = 167

 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
          EL+   V+++VRVC PTY    +K+ GI+V    ++DG  P+
Sbjct: 42 ELQHRGVRHLVRVCGPTYDATLVKSRGIDVHSWPFDDGAPPT 83


>pdb|1V3A|A Chain A, Structure Of Human Prl-3, The Phosphatase Associated
          With Cancer Metastasis
          Length = 173

 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
          +LKK+    VVRVCE TY    L+ +GI V D  ++DG  P
Sbjct: 36 DLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPFDDGAPP 76


>pdb|1R6H|A Chain A, Solution Structure Of Human Prl-3
          Length = 172

 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
          +LKK+    VVRVCE TY    L+ +GI V D  ++DG  P
Sbjct: 39 DLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPFDDGAPP 79


>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
          Length = 348

 Score = 28.9 bits (63), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 19  YHGVNLENHLHLAYHELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
           YH  + E ++       K H V  ++R+ +  Y  +     G +  DL + DG++P+
Sbjct: 202 YHQHSPETYIQY----FKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPT 254


>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
 pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
          Length = 348

 Score = 28.9 bits (63), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 19  YHGVNLENHLHLAYHELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
           YH  + E ++       K H V  ++R+ +  Y  +     G +  DL + DG++P+
Sbjct: 202 YHQHSPETYIQY----FKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPT 254


>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
           Hepatocyte Growth Factor-Regulated Tyrosine Kinase
           Substrate (Hgs-Hrs) At 1.48 A Resolution
 pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
           Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
           Resolution
          Length = 226

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 32  YHELKKHQVKNVVRVCEPTYKVEDLKTEG 60
           Y  + K  ++  VRVCEP Y+  + K EG
Sbjct: 198 YSTIPKFGIEKEVRVCEPCYEQLNRKAEG 226


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,545,717
Number of Sequences: 62578
Number of extensions: 85509
Number of successful extensions: 206
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 15
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)