BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12446
(77 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54DU9|TP4AA_DICDI Probable protein tyrosine phosphatase type IVA A OS=Dictyostelium
discoideum GN=DDB_G0292024 PE=3 SV=1
Length = 166
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 25 ENHLHLAYHELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
+++L L +ELKK+ V ++VR C+PTY E L+ GI V D+ + DG SP
Sbjct: 30 DDNLPLYINELKKYNVSHLVRACDPTYSTEPLQAIGIQVHDMPFADGGSP 79
>sp|Q5R7J8|TP4A1_PONAB Protein tyrosine phosphatase type IVA 1 OS=Pongo abelii GN=PTP4A1
PE=2 SV=1
Length = 173
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
ELKK+ V +VRVCE TY ++ EGI+V D ++DG PS
Sbjct: 36 ELKKYGVTTIVRVCEATYDTALVEKEGIHVLDWPFDDGAPPS 77
>sp|Q78EG7|TP4A1_RAT Protein tyrosine phosphatase type IVA 1 OS=Rattus norvegicus
GN=Ptp4a1 PE=1 SV=1
Length = 173
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
ELKK+ V +VRVCE TY ++ EGI+V D ++DG PS
Sbjct: 36 ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS 77
>sp|Q63739|TP4A1_MOUSE Protein tyrosine phosphatase type IVA 1 OS=Mus musculus GN=Ptp4a1
PE=1 SV=1
Length = 173
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
ELKK+ V +VRVCE TY ++ EGI+V D ++DG PS
Sbjct: 36 ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS 77
>sp|Q9TSM6|TP4A1_MACFA Protein tyrosine phosphatase type IVA 1 OS=Macaca fascicularis
GN=PTP4A1 PE=1 SV=1
Length = 173
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
ELKK+ V +VRVCE TY ++ EGI+V D ++DG PS
Sbjct: 36 ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS 77
>sp|Q93096|TP4A1_HUMAN Protein tyrosine phosphatase type IVA 1 OS=Homo sapiens GN=PTP4A1
PE=1 SV=2
Length = 173
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
ELKK+ V +VRVCE TY ++ EGI+V D ++DG PS
Sbjct: 36 ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPS 77
>sp|Q6P9X4|TP4A2_RAT Protein tyrosine phosphatase type IVA 2 OS=Rattus norvegicus
GN=Ptp4a2 PE=2 SV=1
Length = 167
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
ELKK+ V +VRVC+ TY ++ EGI+V D ++DG P
Sbjct: 33 ELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDGAPP 73
>sp|O70274|TP4A2_MOUSE Protein tyrosine phosphatase type IVA 2 OS=Mus musculus GN=Ptp4a2
PE=1 SV=1
Length = 167
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
ELKK+ V +VRVC+ TY ++ EGI+V D ++DG P
Sbjct: 33 ELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDGAPP 73
>sp|Q12974|TP4A2_HUMAN Protein tyrosine phosphatase type IVA 2 OS=Homo sapiens GN=PTP4A2
PE=1 SV=1
Length = 167
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
ELKK+ V +VRVC+ TY ++ EGI+V D ++DG P
Sbjct: 33 ELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDGAPP 73
>sp|Q9D658|TP4A3_MOUSE Protein tyrosine phosphatase type IVA 3 OS=Mus musculus GN=Ptp4a3
PE=1 SV=1
Length = 173
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
+LKK+ VVRVCE TY L+ +GI V D ++DG P
Sbjct: 36 DLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPFDDGAPP 76
>sp|A2VDT1|TP4A3_BOVIN Protein tyrosine phosphatase type IVA 3 OS=Bos taurus GN=PTP4A3
PE=2 SV=1
Length = 173
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
+LKK+ VVRVCE TY L+ +GI V D ++DG P
Sbjct: 36 DLKKYGATTVVRVCEVTYDKAPLEKDGITVVDWPFDDGAPP 76
>sp|O75365|TP4A3_HUMAN Protein tyrosine phosphatase type IVA 3 OS=Homo sapiens GN=PTP4A3
PE=1 SV=2
Length = 173
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
+LKK+ VVRVCE TY L+ +GI V D ++DG P
Sbjct: 36 DLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPFDDGAPP 76
>sp|Q9UNH5|CC14A_HUMAN Dual specificity protein phosphatase CDC14A OS=Homo sapiens
GN=CDC14A PE=1 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 35 LKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
KKH V VVR+ + Y+ + G DL + DG++PS
Sbjct: 216 FKKHNVTAVVRLNKKIYEAKRFTDAGFEHYDLFFIDGSTPS 256
>sp|Q86IL4|TP4AB_DICDI Probable protein tyrosine phosphatase type IVA B OS=Dictyostelium
discoideum GN=DDB_G0272662 PE=3 SV=4
Length = 163
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 35 LKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
+KK+ N+VR CE Y EG+ + +L ++DG P
Sbjct: 37 MKKNSCINIVRCCEINYDASLF--EGVKIHELCFKDGNVP 74
>sp|Q9P7H1|FLP1_SCHPO Tyrosine-protein phosphatase CDC14 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=clp1 PE=1 SV=1
Length = 537
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 38 HQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSP 74
++VK +VR+ P Y + + GI K++ +EDGT P
Sbjct: 225 NKVKLIVRLNGPLYDKKTFENVGIRHKEMYFEDGTVP 261
>sp|Q6PFY9|CC14B_MOUSE Dual specificity protein phosphatase CDC14B OS=Mus musculus
GN=Cdc14b PE=2 SV=1
Length = 485
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 21 GVNLENHLHLAYHE---------LKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDG 71
G + + L YH+ K H V ++R+ + Y + G + DL + DG
Sbjct: 229 GPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFPDG 288
Query: 72 TSPS 75
++P+
Sbjct: 289 STPA 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,875,655
Number of Sequences: 539616
Number of extensions: 1052058
Number of successful extensions: 2397
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2382
Number of HSP's gapped (non-prelim): 18
length of query: 77
length of database: 191,569,459
effective HSP length: 48
effective length of query: 29
effective length of database: 165,667,891
effective search space: 4804368839
effective search space used: 4804368839
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)