RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12446
         (77 letters)



>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
          Length = 166

 Score = 60.4 bits (147), Expect = 3e-13
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 28 LHLAYHELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
          L L   EL+++ V ++VRVC PTY  E L+  GI V D  ++DG  P 
Sbjct: 29 LPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPP 76


>gnl|CDD|240399 PTZ00393, PTZ00393, protein tyrosine phosphatase; Provisional.
          Length = 241

 Score = 41.1 bits (96), Expect = 9e-06
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 28  LHLAYHELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPS 75
           L L   E+K + V ++VR CE TY   ++ + GINV +L + DG +P+
Sbjct: 105 LPLYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPT 152


>gnl|CDD|218634 pfam05555, DUF762, Coxiella burnetii protein of unknown function
          (DUF762).  This family consists several of several
          uncharacterized proteins from the bacterium Coxiella
          burnetii. Coxiella burnetii is the causative agent of
          the Q fever disease.
          Length = 247

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGI 61
          +L+  ++ N ++  E  +K E LK E I
Sbjct: 65 KLEIPEIINSIKAVENVFKKEGLKDEEI 92


>gnl|CDD|132308 TIGR03264, met_CoM_red_C, methyl-coenzyme M reductase I operon
           protein C.  Members of this protein family are protein
           C, a non-structural protein, of the operon for methyl
           coenzyme M reductase, also called coenzyme-B
           sulfoethylthiotransferase (EC 2.8.4.1). That enzyme,
           with alpha, beta, and gamma subunits, catalyzes the last
           step in methanogenesis; it has several modified sites,
           so accessory proteins are expected. Several methanogens
           have encode two such enzymes, designated I and II; this
           protein occurs only operons of type I. The precise
           function is unknown [Energy metabolism, Methanogenesis].
          Length = 194

 Score = 25.1 bits (55), Expect = 3.9
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 13  YKTVTLYHGVNLENHLHLAYHELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDL 66
           +K   ++ G N+++H+      + KH     + VC+     ED    G+  + +
Sbjct: 102 HKLAVIHLG-NVKSHIIYKARLILKHVDIPAIIVCQAPVDFEDFAKIGVKTRAV 154


>gnl|CDD|193533 cd05657, M42_glucanase_like, M42 Peptidase, Endoglucanase-like
           subfamily.  Peptidase M42 family, glucanase (endo-1
           4-beta-glucanase or endoglucanase)-like subfamily.
           Proteins in this subfamily are co-catalytic
           metallopeptidases, found in archaea and bacteria. They
           show similarity to cellulase and endo-1,4-beta-glucanase
           (endoglucanase) which typically bind two zinc or cobalt
           atoms. Some of the enzymes exhibit typical
           aminopeptidase specificity, whereas others are also
           capable of N-terminal deblocking activity, i.e.
           hydrolyzing acylated N-terminal residues. Many of these
           enzymes are assembled either as tetrahedral dodecamers
           or as octahedral tetracosameric structures, with the
           active site located on the inside such that substrate
           sizes are limited, indicating function as possible
           peptide scavengers.
          Length = 336

 Score = 24.0 bits (53), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 44  VRVCEPTYKVEDLKTEGINVKD 65
           VR+ E     ED++  GINV D
Sbjct: 137 VRIDEKVKSKEDVEALGINVGD 158


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0729    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,834,477
Number of extensions: 284097
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 9
Length of query: 77
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 31
Effective length of database: 8,897,318
Effective search space: 275816858
Effective search space used: 275816858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)