RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12446
(77 letters)
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa,
MSGPP, unknown function; HET: MSE EPE; 2.30A
{Leishmania major}
Length = 167
Score = 52.7 bits (126), Expect = 2e-10
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 24 LENHLHLAYHELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPE 77
++L EL+ V+++VRVC PTY +K+ GI+V ++DG P+
Sbjct: 32 SPSNLPTYIKELQHRGVRHLVRVCGPTYDATLVKSRGIDVHSWPFDDGAPPTRA 85
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 44.7 bits (106), Expect = 1e-07
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 27 HLHLAYHELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPE 77
L Y L V+++V + E G+ + L D P+P+
Sbjct: 24 RLPAHYQFLLDLGVRHLVSLTERGP-PHSDSCPGLTLHRLRIPDFCPPAPD 73
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 42.3 bits (99), Expect = 1e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPE 77
ELKK+ V +VRVCE TY ++ EGI+V D ++DG PS +
Sbjct: 35 ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQ 78
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase,
dual specific phosphatase, COMP with peptide,
hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 41.2 bits (96), Expect = 4e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 34 ELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPE 77
ELKK+ V +VRVCE TY ++ EGI+V D ++DG PS +
Sbjct: 56 ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQ 99
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 41.0 bits (96), Expect = 4e-06
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 34 ELKKHQVKNVVRVCEP----------TYKVEDLKTEGINVKDLAYEDGTSPSPE 77
E +K VK V+ + E Y + LK G+ + DG PS
Sbjct: 23 EWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPDGGVPSDS 76
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 40.4 bits (94), Expect = 1e-05
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPE 77
++ K H V ++R+ + Y + G + DL + DG++P+
Sbjct: 202 YHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDA 256
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 37.0 bits (85), Expect = 1e-04
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 34 ELKKHQVKNVVRVCEP----TYKVEDLKTE----GINVKDLAYEDGTSPSPE 77
ELK ++++ C Y+V +L GI DG +P
Sbjct: 66 ELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIA 117
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 32.6 bits (74), Expect = 0.005
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 18 LYHGVNLENHLHLAYHELKKHQ-VKNVVRVC--EPTYKVEDLKTEGINVKDLAYEDGTSP 74
L+ V E + A +K++ + ++ + Y G+ K + T P
Sbjct: 33 LFAYVTSEEDVWTAEQIVKQNPSIGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQTLP 92
Query: 75 SPE 77
Sbjct: 93 PES 95
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.059
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 20/41 (48%)
Query: 36 KKHQVKNVVRVCEPTYKVED-LKTEGINVKDLAYEDGTSPS 75
+K +K K++ LK Y D ++P+
Sbjct: 18 EKQALK----------KLQASLKL---------YADDSAPA 39
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 29.3 bits (65), Expect = 0.077
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 30 LAYHELKKHQVKNVVRVC--EPTYKVEDLKTEGINVKDLAYED-GTSPSPE 77
Y + K ++ +V + Y D++ EGI L + G P+ E
Sbjct: 73 SNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTE 123
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta
estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus
musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A*
1g3m_A*
Length = 297
Score = 26.3 bits (58), Expect = 0.87
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
L + Y ++K+ + VV++ E
Sbjct: 186 KNSRVLFMFYEDMKEDIRREVVKLIE 211
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 26.0 bits (57), Expect = 1.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
+N L + Y EL++ +V R+C
Sbjct: 186 GKDNFLFITYEELQQDLQGSVERICG 211
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 25.9 bits (57), Expect = 1.1
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
++ L+L Y ++KK + + ++ +
Sbjct: 194 DMHRILYLFYEDIKKDPKREIEKILK 219
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 25.9 bits (57), Expect = 1.2
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
+ L+L Y ++KK+ + ++ E
Sbjct: 187 DKHRILYLFYEDMKKNPKHEIQKLAE 212
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform
B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A
{Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Length = 299
Score = 25.9 bits (57), Expect = 1.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
+N L + Y EL++ +V R+C
Sbjct: 188 GKDNFLFITYEELQQDLQGSVERICG 213
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 25.8 bits (57), Expect = 1.3
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
+ L L Y ++K+ + +V +
Sbjct: 185 DRHQILFLFYEDIKRDPKHEIRKVMQ 210
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human
cytosolic sulfotransferase, resveratrol, SGC, cytoplasm,
lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens}
PDB: 2z5f_A*
Length = 298
Score = 25.9 bits (57), Expect = 1.3
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
L L Y ++K++ + + ++
Sbjct: 187 EEHPILFLYYEDMKENPKEEIKKIIR 212
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 25.8 bits (57), Expect = 1.3
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
+N L L+Y ELK+ + + ++C+
Sbjct: 183 EEKNFLLLSYEELKQDTGRTIEKICQ 208
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 25.5 bits (56), Expect = 1.7
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
N L L Y ++ + V V ++
Sbjct: 187 MDSNVLFLKYEDMHRDLVTMVEQLAR 212
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 25.6 bits (56), Expect = 1.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
N L + Y ELKK + R+ E
Sbjct: 219 NPNKVLFVTYEELKKQTEVEMKRIAE 244
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 25.5 bits (56), Expect = 1.9
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
L+L Y ++K++ + ++ +
Sbjct: 184 KEYRILYLFYEDMKENPKCEIQKILK 209
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive
cooperativity, two substrate binding sites; HET: A3P
NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A*
3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A*
3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Length = 295
Score = 25.2 bits (55), Expect = 2.4
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 23 NLENHLHLAYHELKKHQVKNVVRVCE 48
L+L Y ++K++ + + ++ E
Sbjct: 184 RTHPVLYLFYEDMKENPKREIQKILE 209
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase;
2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB:
1ksl_A 1ksv_A*
Length = 234
Score = 24.4 bits (54), Expect = 4.1
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 25 ENHLHLAYHELKKHQVKNVVRVCEPT-YKVEDLK 57
+ L E + HQVK R+ V +L
Sbjct: 174 PTQVRLTISEGRYHQVK---RMFAAVGNHVVELH 204
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural
genomics, lyase; 1.59A {Haemophilus influenzae} SCOP:
d.265.1.3 d.66.1.5
Length = 243
Score = 24.4 bits (54), Expect = 4.2
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 25 ENHLHLAYHELKKHQVKNVVRVCEPT-YKVEDLK 57
+ +++L E + HQVK R+ KV L
Sbjct: 173 DYNVNLTISEGRYHQVK---RMFAALGNKVVGLH 203
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB:
3hyo_A* 3ibq_A*
Length = 282
Score = 24.4 bits (54), Expect = 4.8
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 7 ICRTLDYKTVTLYHGVNLENHLHL 30
+ T+ GV L + L
Sbjct: 246 VAETIAQNRTDDRQGVALGDLLQA 269
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 23.6 bits (51), Expect = 8.9
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 25 ENHLHLAYHELKKHQVKNVVRVCE 48
+ L + Y +LK V + E
Sbjct: 194 ADVLTMRYEDLKGDPVARFSEIVE 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,201,988
Number of extensions: 56846
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 31
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)