RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12446
         (77 letters)



>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa
          {Human (Homo sapiens), pr-1 [TaxId: 9606]}
          Length = 152

 Score = 36.2 bits (83), Expect = 9e-05
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query: 33 HELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPE 77
           ELKK+ V  +VRVCE TY    ++ EGI+V D  ++DG  PS +
Sbjct: 27 EELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQ 71


>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 182

 Score = 35.4 bits (81), Expect = 2e-04
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 23 NLENHLHLAYHELKKHQVKNVVRVCEPTYKVEDLKTEGINVKDLAYEDGTSPSPE 77
            ++         K H V  ++R+ +  Y  +     G +  DL + DG++P+  
Sbjct: 42 YHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDA 96


>d1juga_ d.2.1.2 (A:) Lysozyme {Australian echidna (Tachyglossus
          aculeatus) [TaxId: 9261]}
          Length = 125

 Score = 23.3 bits (50), Expect = 3.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 7  ICRTLDYKTVTLYHGVNLENHLHLAYHE 34
          +C+ L  + +  Y  + L N +  A+HE
Sbjct: 8  LCKNLVAQGMNGYQHITLPNWVCTAFHE 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 293,279
Number of extensions: 11056
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 6
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)