BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12447
(551 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 273/547 (49%), Positives = 341/547 (62%), Gaps = 133/547 (24%)
Query: 1 PECQQTSDKWSRAPPPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVT 60
PE Q TS++WSR PPPEL+P + + FQQ+ +E+Y G+P+PGMPG+Q+ PVP+VRMFGVT
Sbjct: 52 PENQTTSERWSRPPPPELDPSKHNLEFQQLDVENYLGQPLPGMPGAQIGPVPVVRMFGVT 111
Query: 61 MEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVE 120
MEGNSVCCHVHGF PY Y+ AP +F HC ++AL++ +IAD+R NKD +QEAVLMVE
Sbjct: 112 MEGNSVCCHVHGFCPYFYIEAPSQFEEHHCEKLQKALDQKVIADIRNNKDNVQEAVLMVE 171
Query: 121 IVQKQTVFGFWGEELENFLKIT----------------ESVFPTFPTHTYKAFESNIDFD 164
+V+K + G+ G++ + ++KI+ E + +AFE+NIDFD
Sbjct: 172 LVEKLNIHGYNGDKKQRYIKISVTLPRFVAAASRLLKKEVIMSEIDFQDCRAFENNIDFD 231
Query: 165 IRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPC-VSRCQLEIDVSTDDIVSHAPEE 223
IRFMVD D+VGCNWIE+P G W++R H ++P SRCQ+E+D
Sbjct: 232 IRFMVDTDVVGCNWIELPMGHWRIRNSH-----SKPLPESRCQIEVD------------- 273
Query: 224 IDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGAS 283
V+ D +SH PEGEWSKVAP RILSFDIECAGRKGIFP+ DP+IQIANM I QG
Sbjct: 274 --VAFDRFISHEPEGEWSKVAPFRILSFDIECAGRKGIFPEAKIDPVIQIANMVIRQGER 331
Query: 284 ENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNT 343
E F++NVFTLN CAPI+GSQV+C ET++LDKWSAF+
Sbjct: 332 EP-FIRNVFTLNECAPIIGSQVLCHDKETQMLDKWSAFV--------------------- 369
Query: 344 CAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFT 403
RE+DPDI TGYNI NFDFPYL+NRA HL V+NF
Sbjct: 370 --------------------------REVDPDILTGYNINNFDFPYLLNRAAHLKVRNFE 403
Query: 404 FLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVI 463
+LGR+K+IRSVIK+ +QSKQMG+REN+ +NFEG
Sbjct: 404 YLGRIKNIRSVIKEQMLQSKQMGRRENQYVNFEG-------------------------- 437
Query: 464 KDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQH 523
RV FDLLFVLLR+YKLRSYTLN+VSYHFLQEQKEDV H
Sbjct: 438 ----------------------RVPFDLLFVLLRDYKLRSYTLNAVSYHFLQEQKEDVHH 475
Query: 524 SIISDLQ 530
SII+DLQ
Sbjct: 476 SIITDLQ 482
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1
PE=1 SV=2
Length = 1107
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 220/540 (40%), Positives = 290/540 (53%), Gaps = 137/540 (25%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTG--EPIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R PP L+P+ + ++FQQ+ I+HY G +P+PG P VP++R FGVT EG SV
Sbjct: 78 RWLRPTPPALDPQTEPLIFQQLEIDHYVGPAQPVPGGPPPSRGSVPVLRAFGVTDEGFSV 137
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F H + LN AI D RG ++ AVL VE+ +++
Sbjct: 138 CCHIHGFAPYFYTPAPPGFGPEHMGDLQRELNLAISRDSRGGRELTGPAVLAVELCSRES 197
Query: 127 VFGFWGEELENFLKITES----VFPT------------FPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT + V P T ++ +E+N+DF+IRFMVD
Sbjct: 198 MFGYHGHGPSPFLRITVALPRLVAPARRLLEQGIRVAGLGTPSFAPYEANVDFEIRFMVD 257
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ LR + K ++CQLE DV D+VSH
Sbjct: 258 TDIVGCNWLELPAGKYALRLKEK--------ATQCQLEADVLWSDVVSHP---------- 299
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E
Sbjct: 300 -----PEGPWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP----- 349
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGS 350
F++ TL CAPI+G+
Sbjct: 350 -------------------------------------------FLRLALTLRPCAPILGA 366
Query: 351 QVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKD 410
+V + E +LL WS FIR +DPD+ TGYNIQNFD PYLI+RA+ L V+ F FLGRV
Sbjct: 367 KVQSYEKEEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPFLGRVAG 426
Query: 411 IRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQS 470
+ S I+DS QSKQ G+R+ K + + +GRV+
Sbjct: 427 LCSNIRDSSFQSKQTGRRDTKVV-----------------SMVGRVQ------------- 456
Query: 471 KQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
D+L VLLREYKLRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 457 ------------------MDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 498
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/540 (40%), Positives = 287/540 (53%), Gaps = 137/540 (25%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTG--EPIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R PP L+P+ + ++FQQ+ I+HY P+PG P VPI+R FGVT EG SV
Sbjct: 77 RWLRPAPPALDPQMEPLIFQQLEIDHYVAPARPLPGAPPPSQDSVPILRAFGVTNEGVSV 136
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F H + L+ AI D RG K+ AVL VE+ +++
Sbjct: 137 CCHIHGFAPYFYTPAPPGFGPEHLSELQRELSAAISRDQRGGKELTGPAVLAVELCSRES 196
Query: 127 VFGFWGEELENFLKITESV----------------FPTFPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT ++ T ++ +E+N+DF+IRFMVD
Sbjct: 197 MFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRLAGLGTPSFAPYEANVDFEIRFMVD 256
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ LR + K + CQLE DV D++SH
Sbjct: 257 TDIVGCNWLELPAGKYILRPEGK--------ATLCQLEADVLWSDVISHP---------- 298
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEGEW ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E
Sbjct: 299 -----PEGEWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP----- 348
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGS 350
F++ TL CAPI+G+
Sbjct: 349 -------------------------------------------FLRLALTLRPCAPILGA 365
Query: 351 QVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKD 410
+V + E +LL WS FIR +DPD+ TGYNIQNFD PYLI+RA+ L V F LGRV
Sbjct: 366 KVQSYEREEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVPGFPLLGRVIG 425
Query: 411 IRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQS 470
+RS I++S QS+Q G+R++K + + +GRV+
Sbjct: 426 LRSNIRESSFQSRQTGRRDSKVV-----------------SMVGRVQ------------- 455
Query: 471 KQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
D+L VLLREYKLRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 456 ------------------MDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 497
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/540 (38%), Positives = 286/540 (52%), Gaps = 137/540 (25%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTGE--PIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R L+P + ++FQQ+ I+HY G P+PG P + VPI+R FGVT EG SV
Sbjct: 74 RWKRPALCALDPNTEPLIFQQLEIDHYVGSAVPLPGGPPTSCNSVPILRAFGVTDEGFSV 133
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F + H + L+ AI D RG K+ AVL +E+ +++
Sbjct: 134 CCHIHGFAPYFYTPAPPGFGAEHLSDLQRELSTAISRDQRGGKELSGPAVLAIELCSRES 193
Query: 127 VFGFWGEELENFLKITESV----------------FPTFPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT ++ P T ++ +E+N+DF+IRFMVD
Sbjct: 194 MFGYHGHGPSPFLRITLALPRLVAPARRLLEQGIRVPGLGTPSFAPYEANVDFEIRFMVD 253
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ R + K ++CQLE+DV D++SH
Sbjct: 254 ADIVGCNWLELPAGKYVWRTEKK--------ATQCQLEVDVLWSDVISHP---------- 295
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG+W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E
Sbjct: 296 -----PEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP----- 345
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGS 350
F++ TL CAPI+G+
Sbjct: 346 -------------------------------------------FLRLALTLRPCAPILGA 362
Query: 351 QVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKD 410
+V + E +LL W FI +DPD+ TGYNIQNFD PYLI+RA+ L V F FLGRV
Sbjct: 363 KVQSYEREEDLLQAWPNFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTG 422
Query: 411 IRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQS 470
+RS I+DS QS+Q+G+R++K + + +GRV+ +
Sbjct: 423 LRSNIRDSSFQSRQVGRRDSKVV-----------------SMVGRVQ----------MDM 455
Query: 471 KQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
Q+ RE+K LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 456 LQVLLREHK---------------------LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 494
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1
PE=1 SV=2
Length = 1105
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/540 (38%), Positives = 284/540 (52%), Gaps = 137/540 (25%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTGE--PIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R L+P + ++FQQ+ I+HY G P+P P VPI+R FGVT EG SV
Sbjct: 76 RWRRPTLRALDPSTEPLIFQQLEIDHYVGSAPPLPEGPLPSRNSVPILRAFGVTDEGFSV 135
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+ GF+PY Y AP F + H ++ LN AI D RG K+ AVL +E+ +++
Sbjct: 136 CCHIQGFAPYFYTPAPPGFGAEHLSELQQELNAAISRDQRGGKELSGPAVLAIELCSRES 195
Query: 127 VFGFWGEELENFLKITESV----------------FPTFPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT ++ P T ++ +E+N+DF+IRFMVD
Sbjct: 196 MFGYHGHGPSPFLRITLALPRLMAPARRLLEQGVRVPGLGTPSFAPYEANVDFEIRFMVD 255
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ R + K + CQLE+DV D++SH
Sbjct: 256 ADIVGCNWLELPAGKYVRRAEKK--------ATLCQLEVDVLWSDVISHP---------- 297
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG+W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E
Sbjct: 298 -----PEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP----- 347
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGS 350
F++ TL CAPI+G+
Sbjct: 348 -------------------------------------------FLRLALTLRPCAPILGA 364
Query: 351 QVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKD 410
+V + E +LL W+ FI +DPD+ TGYNIQNFD PYLI+RA+ L V F FLGRV
Sbjct: 365 KVQSYEREEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTG 424
Query: 411 IRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQS 470
+RS I+DS QS+Q+G+R++K I + +GRV+ +
Sbjct: 425 LRSNIRDSSFQSRQVGRRDSKVI-----------------SMVGRVQ----------MDM 457
Query: 471 KQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
Q+ RE+K LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 458 LQVLLREHK---------------------LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 496
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus
GN=Pold1 PE=2 SV=1
Length = 1103
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/540 (38%), Positives = 284/540 (52%), Gaps = 137/540 (25%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTGE--PIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R P L+P + ++FQQ+ I+HY G P+P P + VPI+R FGVT EG SV
Sbjct: 74 RWLRPTPLALDPSTEPLIFQQLEIDHYVGTSPPLPEGPPASRNSVPILRAFGVTDEGFSV 133
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F + H + LN AI D RG K+ AVL +E+ +++
Sbjct: 134 CCHIHGFAPYFYTPAPPGFGAEHLSELQRELNAAISRDQRGGKELSGPAVLAIELCSRES 193
Query: 127 VFGFWGEELENFLKITESV----------------FPTFPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT ++ P T ++ +E+N+DF+IRFMVD
Sbjct: 194 MFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLGTPSFAPYEANVDFEIRFMVD 253
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ R + K + CQLE+DV D++SH
Sbjct: 254 ADIVGCNWLELPAGKYVRRAEKK--------ATLCQLEVDVLWSDVISHP---------- 295
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG+W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E
Sbjct: 296 -----PEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP----- 345
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGS 350
F++ TL CAPI+G+
Sbjct: 346 -------------------------------------------FLRLALTLRPCAPILGA 362
Query: 351 QVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKD 410
+V + E +LL W+ FI +DPD+ TGYNIQNFD PYLI+RA+ L V F FLGRV
Sbjct: 363 KVQSYEREEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTG 422
Query: 411 IRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQS 470
+RS I+DS QS+Q+G+R++K + + +GRV+ +
Sbjct: 423 LRSNIRDSSFQSRQVGRRDSKVV-----------------SMVGRVQ----------MDM 455
Query: 471 KQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
Q+ RE K LR Y TLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 456 LQVLLREYK----------------LRSY-----TLNAVSFHFLGEQKEDVQHSIITDLQ 494
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 325 bits (832), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 191/543 (35%), Positives = 277/543 (51%), Gaps = 146/543 (26%)
Query: 10 WSRAPPPELNPKEDKIVFQQISIEHY-TGEPIPGMPGSQLKPVPIVRMFGVTMEGNSVCC 68
WSR P +L P + ++FQQ+ +++ EP+PGMPG ++ P+P +R+FGVT EGNSV C
Sbjct: 85 WSRKPVQDLVPHKKPLIFQQLEVDYTEIKEPVPGMPGPKVGPLPAIRLFGVTKEGNSVLC 144
Query: 69 HVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAI-IADMRGNKDEIQEAVLMVEIVQKQTV 127
VHGF PY ++S P F C++ K LN ++ ++ + N+ +I+ V+ ++I +K+++
Sbjct: 145 KVHGFLPYFFISCPPGFTEADCKSLKHDLNESMKMSSNQSNEKDIENIVVSIDIEKKKSI 204
Query: 128 FGFWGEELENFLKITESVFPTF--------------------PTHTYKAFESNIDFDIRF 167
G+ L +F++IT + P F P Y+ +ESNI F +RF
Sbjct: 205 MGYNPNPLSDFIRIT-LILPKFVTRCREIFESGRHHFTIPGQPFRQYQTYESNILFALRF 263
Query: 168 MVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVS 227
++D I GC+WIE+P ++L + VS CQ+E+D S + I+S +S
Sbjct: 264 LIDKGITGCSWIELPANTYKL---------SETPVSTCQIEVDTSLETIIS-------LS 307
Query: 228 TDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIF 287
DD +P AP RILSFDIECAGRKG+FP+P DP+IQI+N+ + G +E F
Sbjct: 308 DDD----SP-------APYRILSFDIECAGRKGVFPEPEKDPVIQISNIVKNNGDAEP-F 355
Query: 288 VKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPI 347
+KN+FTL C+ IVG+ VI K E +LL +W F
Sbjct: 356 IKNIFTLKGCSSIVGAHVIPHKREEDLLREWRKF-------------------------- 389
Query: 348 VGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGR 407
+ ++DPD+ GYNI NFD PYLI+RA+ L + F LGR
Sbjct: 390 ---------------------VIKVDPDVIIGYNIVNFDIPYLISRARQLKIPEFALLGR 428
Query: 408 VKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSF 467
+K S IK + S +G RE+K I+ G
Sbjct: 429 IKTTISKIKSTRFSSSNLGTRESKEISMPG------------------------------ 458
Query: 468 IQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIIS 527
R FDL+ + R++KL SY+LN+VS HFL+EQKEDV SIIS
Sbjct: 459 ------------------RTQFDLMQAIQRDHKLTSYSLNNVSAHFLKEQKEDVHFSIIS 500
Query: 528 DLQ 530
DLQ
Sbjct: 501 DLQ 503
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 319 bits (818), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 204/553 (36%), Positives = 269/553 (48%), Gaps = 153/553 (27%)
Query: 2 ECQQTSDKWSRAP-PPELNPKEDKIVFQQISIEHYTGEP----IPGMPGSQLKPVPIVRM 56
E + S W+R P P I+FQQ+ I+ E +PG G PI+RM
Sbjct: 71 ERESRSSAWARPPLSPAYLSNSQSIIFQQLEIDSIIAESHKELLPGSSGQ----APIIRM 126
Query: 57 FGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMR-GNKD-EIQE 114
FGVT EGNSVCC VHGF PY Y++ P F ++L MR NK+ ++ +
Sbjct: 127 FGVTREGNSVCCFVHGFEPYFYIACPPGMGPDDISNFHQSLE----GRMRESNKNAKVPK 182
Query: 115 AVLMVEIVQKQTVFGFWGEELENFLKITESVFPT-----------------FPTHTYKAF 157
V +E+VQK+++ + ++ + FLKIT ++ PT +++ +
Sbjct: 183 FVKRIEMVQKRSIMYYQQQKSQTFLKITVAL-PTMVASCRGILDRGLQIDGLGMKSFQTY 241
Query: 158 ESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIV 217
ESNI F +RFMVD DIVG NWIE+P GK++ N +S CQLE D++
Sbjct: 242 ESNILFVLRFMVDCDIVGGNWIEVPTGKYK---------KNARTLSYCQLEFHCLYSDLI 292
Query: 218 SHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMC 277
SHA E GE+SK+AP R+LSFDIECAGRKG FP+ HDP+IQIAN+
Sbjct: 293 SHAAE---------------GEYSKMAPFRVLSFDIECAGRKGHFPEAKHDPVIQIANLV 337
Query: 278 ISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKN 337
QG ++ FV+NV TL +CAPIVG V+ +TE E+L W I
Sbjct: 338 TLQG-EDHPFVRNVMTLKSCAPIVGVDVMSFETEREVLLAWRDLI--------------- 381
Query: 338 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHL 397
R++DPDI GYNI FD PYLI RA L
Sbjct: 382 --------------------------------RDVDPDIIIGYNICKFDLPYLIERAATL 409
Query: 398 GVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVK 457
G++ F LGRVK+ R ++DS S+Q G RE+K EG
Sbjct: 410 GIEEFPLLGRVKNSRVRVRDSTFSSRQQGIRESKETTIEG-------------------- 449
Query: 458 DIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQ 517
R FDL+ + R++KL SY+LNSVS HFL EQ
Sbjct: 450 ----------------------------RFQFDLIQAIHRDHKLSSYSLNSVSAHFLSEQ 481
Query: 518 KEDVQHSIISDLQ 530
KEDV HSII+DLQ
Sbjct: 482 KEDVHHSIITDLQ 494
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 198/541 (36%), Positives = 263/541 (48%), Gaps = 142/541 (26%)
Query: 9 KWSR-APPPELNPKEDK-IVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R A P +L + + FQQ+ I++ GE + + P I+R+FGVT EG+SV
Sbjct: 85 RWRRPALPADLASGCSRNVAFQQLEIDYVIGESHKVLLPNSSGPAAILRIFGVTREGHSV 144
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CC VHGF PY Y+S P F + L + R + + V +E+VQKQT
Sbjct: 145 CCQVHGFEPYFYISCPMGMGPDDISRFHQTLEGRMKDSNRNSN--VPRFVKRIELVQKQT 202
Query: 127 VFGFWGEELENFLKITESVFPT-----------------FPTHTYKAFESNIDFDIRFMV 169
+ + ++ + FLKI ++ PT + ++ +ESNI F +RFM+
Sbjct: 203 IMHYQPQQSQPFLKIVVAL-PTMVASCRGILERGITIEGLGSKSFLTYESNILFALRFMI 261
Query: 170 DNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTD 229
D +IVG NWIE+P GK+ + +S CQLE+D D+VSHA E
Sbjct: 262 DCNIVGGNWIEVPAGKYMKAAR---------IMSYCQLELDCLYSDLVSHAAE------- 305
Query: 230 DIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVK 289
GE SK+AP RILSFDIECAGRKG FP+P HDP+IQIAN+ QG + FV+
Sbjct: 306 --------GEHSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQP-FVR 356
Query: 290 NVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVG 349
NV TL +C+PIVG V+ TE ++L W FI
Sbjct: 357 NVMTLKSCSPIVGVDVMSFDTERDVLLAWRDFI--------------------------- 389
Query: 350 SQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVK 409
RE+DPDI GYNI FD PYLI RA+ L + F LGR++
Sbjct: 390 --------------------REVDPDIIIGYNICKFDLPYLIERAEVLKIVEFPILGRIR 429
Query: 410 DIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQ 469
+ R ++D+ S+Q G RE+K + EG
Sbjct: 430 NSRVRVRDTTFSSRQYGMRESKDVAVEG-------------------------------- 457
Query: 470 SKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDL 529
RV FDLL + R+YKL SY+LNSVS HFL EQKEDV HSIISDL
Sbjct: 458 ----------------RVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISDL 501
Query: 530 Q 530
Q
Sbjct: 502 Q 502
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 296 bits (757), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 196/544 (36%), Positives = 265/544 (48%), Gaps = 149/544 (27%)
Query: 9 KWSRAP-PPELNPKEDKIVFQQISIEHYT----GEPIPGMPGSQLKPVPIVRMFGVTMEG 63
KW+R P + ++FQQ+ I++ GE +P G PV I+R+FGVT EG
Sbjct: 43 KWTRPPLSAGYVAQSRSVLFQQLEIDYVIAESHGELLPNSSG----PVAIIRIFGVTKEG 98
Query: 64 NSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQ 123
+SVCC+VHGF PY Y+ P F + L + R + + + V +E+VQ
Sbjct: 99 HSVCCNVHGFEPYFYICCPPGMGPDDISHFHQTLEGRMREANRNSN--VGKFVRRIEMVQ 156
Query: 124 KQTVFGFWGEELENFLKITESVFPT-----------------FPTHTYKAFESNIDFDIR 166
++++ + + FLKI ++ PT ++ +ESN+ F +R
Sbjct: 157 RRSIMYYQQSNSQPFLKIVVAL-PTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALR 215
Query: 167 FMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDV 226
FM+D +IVG NWI IP GK++ + +S CQLE D +++SHAPE
Sbjct: 216 FMIDCNIVGGNWIGIPAGKYKKTAK---------SLSYCQLEFDCLYSELISHAPE---- 262
Query: 227 STDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENI 286
GE+SK+AP RILSFDIECAGRKG FP+P HDP+IQIAN+ QG +
Sbjct: 263 -----------GEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQP- 310
Query: 287 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAP 346
F++NV TL +C+PIVG V+ +TE E+L W FI
Sbjct: 311 FIRNVMTLKSCSPIVGVDVMPFETEREVLLAWRDFI------------------------ 346
Query: 347 IVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLG 406
RE+DPDI GYNI FD PYLI RA +L + F LG
Sbjct: 347 -----------------------REVDPDIIIGYNICKFDLPYLIERALNLKIAEFPILG 383
Query: 407 RVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDS 466
R+++ R +KD+ S+Q G RE+K + EG
Sbjct: 384 RIRNSRVRVKDTTFSSRQYGTRESKEVAVEG----------------------------- 414
Query: 467 FIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSII 526
RV FDLL V+ R+YKL SY+LNSVS HFL EQKEDV HSII
Sbjct: 415 -------------------RVTFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSII 455
Query: 527 SDLQ 530
SDLQ
Sbjct: 456 SDLQ 459
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 190/543 (34%), Positives = 258/543 (47%), Gaps = 163/543 (30%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSVCC 68
+W R P +NP++D I FQQI E +T GS VP +R+FGVT GNS+
Sbjct: 82 QWQRPALPAINPEKDDIYFQQIDSEEFT-------EGS----VPSIRLFGVTDNGNSILV 130
Query: 69 HVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVF 128
HV GF PY YV AP F F + L D N I + I K+ ++
Sbjct: 131 HVVGFLPYFYVKAPVGFRPEMLERFTQDL------DATCNGGVIDHCI----IEMKENLY 180
Query: 129 GFWGEELENFLKIT---------------------ESVFPTFPTHTYKAFESNIDFDIRF 167
GF G E F+KI E +FP T FESN + +RF
Sbjct: 181 GFQGNEKSPFIKIFTTNPRILSRARNVFERGEFNFEELFPVGVGVT--TFESNTQYLLRF 238
Query: 168 MVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVS 227
M+D D+VG NWI +P K+Q R Q++ SN CQ+E ++ D++S E
Sbjct: 239 MIDCDVVGMNWIHLPASKYQFRYQNRVSN--------CQIEAWINYKDLISLPAE----- 285
Query: 228 TDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIF 287
G+WSK+APLRI+SFDIECAGRKG+FPDP+ DP+IQIA++ ++Q F
Sbjct: 286 ----------GQWSKMAPLRIMSFDIECAGRKGVFPDPSIDPVIQIASI-VTQYGDSTPF 334
Query: 288 VKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPI 347
V+NVF ++TC+ IVG+QV + + E+L WS F+
Sbjct: 335 VRNVFCVDTCSQIVGTQVYEFQNQAEMLSSWSKFV------------------------- 369
Query: 348 VGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGR 407
R++DPD+ GYNI NFD PYL++RAK L + NF LGR
Sbjct: 370 ----------------------RDVDPDVLIGYNICNFDIPYLLDRAKSLRIHNFPLLGR 407
Query: 408 VKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSF 467
+ + SV K++ SK G RE+KT + G
Sbjct: 408 IHNFFSVAKETTFSSKAYGTRESKTTSIPG------------------------------ 437
Query: 468 IQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIIS 527
R+ D+L V+ R++KLRSY+LN+V FL EQKEDV +SII+
Sbjct: 438 ------------------RLQLDMLQVMQRDFKLRSYSLNAVCSQFLGEQKEDVHYSIIT 479
Query: 528 DLQ 530
DLQ
Sbjct: 480 DLQ 482
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 288 bits (738), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 186/533 (34%), Positives = 250/533 (46%), Gaps = 149/533 (27%)
Query: 15 PPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSVCCHVHGFS 74
P + +P I FQQI E I S +VR FGVT EG+SV C+V GF
Sbjct: 103 PTDFDPSLYDISFQQIDAEQSVLNGIKDENTST-----VVRFFGVTSEGHSVLCNVTGFK 157
Query: 75 PYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEE 134
YLYV AP ++ +E +N+ + + A+ +E+V KQ+++G+ G+
Sbjct: 158 NYLYVPAPNSSDAND----QEQINKFV----HYLNETFDHAIDSIEVVSKQSIWGYSGDT 209
Query: 135 LENFLKITESVFPTFPTHTYKAFE-----------------SNIDFDIRFMVDNDIVGCN 177
F KI + +P AFE NI + +R MVD IVG +
Sbjct: 210 KLPFWKIYVT-YPHMVNKLRTAFERGHLSFNSWFSNGTTTYDNIAYTLRLMVDCGIVGMS 268
Query: 178 WIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPE 237
WI +P GK+ + NR VS CQLE+ ++ ++++H E
Sbjct: 269 WITLPKGKYSM-----IEPNNR--VSSCQLEVSINYRNLIAHPAE--------------- 306
Query: 238 GEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNVFTLNTC 297
G+WS APLRI+SFDIECAGR G+FP+P +DP+IQIAN+ GA +
Sbjct: 307 GDWSHTAPLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKP------------ 354
Query: 298 APIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKT 357
F++NVFTLNTC+PI GS + T
Sbjct: 355 ------------------------------------FIRNVFTLNTCSPITGSMIFSHAT 378
Query: 358 ETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKD 417
E E+L W FI ++DPD+ GYN NFD PYL+NRAK L V +F + GR+K ++ IK+
Sbjct: 379 EEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKE 438
Query: 418 SFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRE 477
S SK G RE K +N +G
Sbjct: 439 SVFSSKAYGTRETKNVNIDG---------------------------------------- 458
Query: 478 NKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
R+ DLL + REYKLRSYTLN+VS HFL EQKEDV +SIISDLQ
Sbjct: 459 --------RLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQ 503
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 285 bits (729), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 175/501 (34%), Positives = 246/501 (49%), Gaps = 142/501 (28%)
Query: 54 VRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEAL-NRAIIADMRGNKDEI 112
V+++GVT GNS+C V + P+ Y AP+ F H + A+ N A RG +
Sbjct: 86 VKLYGVTKSGNSICVIVTDYFPHFYFQAPQGFGVEHIGTAQSAICNMVAAAKRRGGSGQA 145
Query: 113 Q------EAVLMVEIVQKQTVFGFWGEELE-NFLKITES----------------VFPTF 149
Q + ++ VEIV + ++ F G + + F+K++ S +
Sbjct: 146 QLPGKVVDNLVHVEIVHGENLYYFRGADTKVPFVKVSGSTEALHKARMELKNGVNLMGKG 205
Query: 150 PTHTYKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEI 209
P + +ESNI+ + F+ +IVGC WIEIP GK ++ SN+ + SRCQ+E+
Sbjct: 206 PVNVGNLYESNINVIVMFLAKTNIVGCGWIEIPAGKCRI-----LSNSEKS--SRCQIEV 258
Query: 210 DVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDP 269
V +++ H + GEW+ +AP+R LS DIEC GR+G+FP+ DP
Sbjct: 259 TVPVKNLIVHESD---------------GEWAGIAPIRTLSLDIECIGRRGVFPEAIKDP 303
Query: 270 IIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGA 329
IIQIAN+ +G +E FV+N F L TCAP+VGS +I C E LL+KW+ F+
Sbjct: 304 IIQIANLVKIEGEAEP-FVRNCFVLGTCAPVVGSNIIQCVNEKVLLEKWAEFV------- 355
Query: 330 SENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPY 389
RE+DPDI TGYNI NFD PY
Sbjct: 356 ----------------------------------------REVDPDIITGYNILNFDLPY 375
Query: 390 LINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKN 449
+++RAK L + + LGR K+ SV++D+ I SKQMG R NK+I+ G
Sbjct: 376 ILDRAKVLSLPQVSHLGRQKEKGSVVRDAAISSKQMGSRVNKSIDIHG------------ 423
Query: 450 FTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSV 509
R+ FD+L V+LR+YKLRSYTLNSV
Sbjct: 424 ------------------------------------RIIFDVLQVVLRDYKLRSYTLNSV 447
Query: 510 SYHFLQEQKEDVQHSIISDLQ 530
SY FL EQKEDV+H+II DLQ
Sbjct: 448 SYQFLSEQKEDVEHNIIPDLQ 468
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 188/539 (34%), Positives = 247/539 (45%), Gaps = 165/539 (30%)
Query: 6 TSDKWSRAPPPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGNS 65
T W R P P + ED I FQQ+ E Y + R FG+T EG+S
Sbjct: 45 TDQTWDRPPLP--SSFED-ISFQQLDAEEYHD-----------RGNTYARFFGITQEGHS 90
Query: 66 VCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQ 125
V C+V GF Y Y PK F+E L ++ D I+ VEI K+
Sbjct: 91 VLCNVTGFIHYFYCPVPK--------GFEENLTE-FTNYLKATFDGIER----VEITSKE 137
Query: 126 TVFGFWGEELENFLKI--------TESVFPTFPTH------TYKAFESNIDFDIRFMVDN 171
+++G+ F KI S F H TY NI++ +R M+D
Sbjct: 138 SIWGYSNNIKTPFFKIFAKNNISKIRSAFQNGQVHNIDPCITY----DNINYLLRLMIDC 193
Query: 172 DIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDI 231
I G +WI +P R ++K N +S CQ+E + D++SH PE
Sbjct: 194 KITGMSWITLP------RDKYKIVNNK---ISTCQIECSIDYRDLISHPPE--------- 235
Query: 232 VSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNV 291
GEW K+APLRILSFDIECAGRKG+FP+ HDP+IQIAN+ G S+
Sbjct: 236 ------GEWLKMAPLRILSFDIECAGRKGVFPEAEHDPVIQIANVVQKSGESKP------ 283
Query: 292 FTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQ 351
FV+NVFT+NTC+ I+GSQ
Sbjct: 284 ------------------------------------------FVRNVFTVNTCSSIIGSQ 301
Query: 352 VICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDI 411
+ + E ++L W FI ++DPD+ GYN NFD PY++NRAK LG+ +F F GR+K +
Sbjct: 302 IFEHQREEDMLMHWKEFITKVDPDVIIGYNTANFDIPYVLNRAKALGLNDFPFFGRLKRV 361
Query: 412 RSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQSK 471
+ IKD+ S+ G RENK +N +G
Sbjct: 362 KQEIKDAVFSSRAYGTRENKVVNIDG---------------------------------- 387
Query: 472 QMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
R+ DLL + REYKLRSYTLNSVS HFL EQKEDVQHSII+DLQ
Sbjct: 388 --------------RMQLDLLQFIQREYKLRSYTLNSVSAHFLGEQKEDVQHSIITDLQ 432
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 225 bits (573), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 229/496 (46%), Gaps = 135/496 (27%)
Query: 51 VPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKD 110
VPI+R++ + +G SV +VH F PY YV P +F++ + +N + ++
Sbjct: 116 VPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPDDFDNEDLIKLEMLMNENL--NLNSQYK 173
Query: 111 EIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPT---------HTYK------ 155
++ +L +EIV+ +++ F ++FLKIT + P+ H
Sbjct: 174 IYEKKILKIEIVKTESLMYFKKNGKKDFLKITVLLPKMVPSLKKYFEGIVHVNNKSIGGI 233
Query: 156 AFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDD 215
+E+N+ F +R+++D+ I G +WI G + +R ++K +S C EID+S +
Sbjct: 234 VYEANLPFILRYIIDHKITGSSWINCKKGHYYIRNKNK-------KISNCTFEIDISYEH 286
Query: 216 IVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGI-FPDPNHDPIIQIA 274
+ E I + E E+ ++ LRILSFDIEC G FP+ +DPIIQI+
Sbjct: 287 V-----EPITL----------ENEYQQIPKLRILSFDIECIKLDGKGFPEAKNDPIIQIS 331
Query: 275 NMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIF 334
++ QG E +D + FI
Sbjct: 332 SILYFQG-------------------------------EPIDNCTKFI------------ 348
Query: 335 VKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRA 394
FTL CA I GS VI E LL+ W+ FI +DPD TGYNI NFD PY++NR
Sbjct: 349 ----FTLLECASIPGSNVIWFNDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRG 404
Query: 395 KHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLG 454
L +K FLGR+K++ S +KDS SKQ G E K IN G
Sbjct: 405 TALNLKKLKFLGRIKNVASTVKDSSFSSKQFGTHETKEINIFG----------------- 447
Query: 455 RVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFL 514
R+ FD+ ++ R+YKL+SYTLN VS+ FL
Sbjct: 448 -------------------------------RIQFDVYDLIKRDYKLKSYTLNYVSFEFL 476
Query: 515 QEQKEDVQHSIISDLQ 530
+EQKEDV +SI++DLQ
Sbjct: 477 KEQKEDVHYSIMNDLQ 492
>sp|Q5UQR0|DPOL_MIMIV DNA polymerase OS=Acanthamoeba polyphaga mimivirus GN=POLB PE=3
SV=1
Length = 1740
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 118/524 (22%), Positives = 204/524 (38%), Gaps = 141/524 (26%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDE- 111
++++FG T + + VC V G++P+ YV PK++ F E L + + N DE
Sbjct: 34 VIQLFGRTEDDHDVCLKVTGYTPFFYVEIPKQWKQRQVDKFVEILKNKVQYHCKKNLDED 93
Query: 112 --IQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHT---------------- 153
+ ++++ +V+K + F ++L NFL + F +HT
Sbjct: 94 FDLSKSLIKYAMVKKHKFYNFRNKQLYNFLLL------VFKSHTAMKEFSSILARPLEAK 147
Query: 154 --------YKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRC 205
Y+ +ESNI+ IRFM N++ C W I K + P S C
Sbjct: 148 GLTNKPMLYQRYESNIEPHIRFMHINNLSSCGWASIDKDKLK----------KIPEYSNC 197
Query: 206 QLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDP 265
V+ D+ P ++AP +I+ +DIEC FP
Sbjct: 198 DYSFSVNWKDV------------------KPSNNDDRMAPFKIMGYDIECVSCDQNFPQA 239
Query: 266 NH--DPIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIR 323
D IIQI + + + S + +++ TL CAPI G V C K E LL
Sbjct: 240 ERPSDKIIQIG-ITMYRYGSMKCYEQHILTLKKCAPIEGVNVECYKKEKGLL-------- 290
Query: 324 TMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQ 383
+G ++ I EL PD TGYN
Sbjct: 291 ---RG------------------------------------FAKKIAELRPDFKTGYNNF 311
Query: 384 NFDFPYLINRAKHLGVKNFTFLGRVKDIR-SVIKDSFIQS--KQMGK-RENKTINFEG-- 437
FD Y+ +R + + G+ + + + +K+ F+ + +GK N I EG
Sbjct: 312 GFDDKYIYDRILRIDKRE----GKKQGVNINALKNKFMDEILRTIGKVNNNYLIENEGLD 367
Query: 438 -------------NSDRRETLGVKNFTFLGRVKDIRSVIKDSF-------IQSKQMGKRE 477
+S + ++ T++ +++ V + S +G E
Sbjct: 368 RIPIYTTVKDKKISSKASRFIQIRGGTYVENGNNLKYVQSPGITYFEVKNLSSSALGDNE 427
Query: 478 NKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDV 521
K I G + D++ V+ R+++L Y L++VS +F+ E+ + +
Sbjct: 428 LKFIQIPGVLSIDMMKVIQRDHRLIGYKLDNVSANFITEKADKI 471
>sp|P24907|DPOL_SHV21 DNA polymerase OS=Saimiriine herpesvirus 2 (strain 11) GN=9 PE=3
SV=1
Length = 1009
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 148/360 (41%), Gaps = 87/360 (24%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEI 112
++++ G T+EG SVC +V G Y YV P+ N T+ K+ALN + +
Sbjct: 122 VLKLLGRTLEGASVCVNVFGQRNYFYVKVPEGGNITY--LIKQALNEKFSPSCAYQTEAV 179
Query: 113 QEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFESNIDFDIRFMVDND 172
++ +L ++ VF + KI++S+ ++ + FE+N+D RF++DND
Sbjct: 180 KKKILSRYDPEEHDVFKVTVSSSLSVYKISDSLV----SNGCEVFETNVDAIRRFVIDND 235
Query: 173 IVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIV 232
W C S C ++ D SH E D D+
Sbjct: 236 FSTFGWYT--------------------CKSACP---RITNRD--SHTDIEFDCGYYDLE 270
Query: 233 SHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNH--DPIIQIANMCISQGASENIFVKN 290
HA EW P I+SFDIEC G KG FP + D IIQI+ + GA + +N
Sbjct: 271 FHADRTEW---PPYNIMSFDIECIGEKG-FPCAKNEGDLIIQISCVFWHAGALDT--TRN 324
Query: 291 -VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVG 349
+ +L TC+ + ++V +E ++L + + I
Sbjct: 325 MLLSLGTCSAVENTEVYEFPSEIDMLHGFFSLI--------------------------- 357
Query: 350 SQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVK 409
R+ + +I TGYNI NFD PYLI+RA + + RVK
Sbjct: 358 --------------------RDFNVEIITGYNISNFDLPYLIDRATQIYNIKLSDYSRVK 397
>sp|P03198|DPOL_EBVB9 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain
B95-8) GN=BALF5 PE=1 SV=1
Length = 1015
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 114/493 (23%), Positives = 184/493 (37%), Gaps = 155/493 (31%)
Query: 53 IVRMFGV-TMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNK-D 110
++++ G +G SVC +V G Y Y SAP+ + + A+++ ++ + D
Sbjct: 126 VIKLLGRRKADGASVCVNVFGQQAYFYASAPQGLD----------VEFAVLSALKASTFD 175
Query: 111 EIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTY---------KAFESNI 161
+ VE V ++++ G+ G ++ KIT S P H + FE+N+
Sbjct: 176 RRTPCRVSVEKVTRRSIMGY-GNHAGDYHKITLS-HPNSVCHVATWLQDKHGCRIFEANV 233
Query: 162 DFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAP 221
D RF++DND V W + R + R Q S+A
Sbjct: 234 DATRRFVLDNDFVTFGWY-----------------SCRRAIPRLQHRD--------SYAE 268
Query: 222 EEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNH--DPIIQIANMCIS 279
E D D+ + W + L+FDIEC G +G FP + D I+QI+ + S
Sbjct: 269 LEYDCEVGDLSVRREDSSWPS---YQALAFDIECLGEEG-FPTATNEADLILQISCVLWS 324
Query: 280 QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVF 339
G + + + TL TC I G +V +E LD AF +
Sbjct: 325 TGEEAGRYRRILLTLGTCEDIEGVEVYEFPSE---LDMLYAFFQ---------------- 365
Query: 340 TLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGV 399
IR+L +I TGYN+ NFD+PY+++RA+H+
Sbjct: 366 ----------------------------LIRDLSVEIVTGYNVANFDWPYILDRARHIYS 397
Query: 400 KNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDI 459
N LG+++ G V ++
Sbjct: 398 INPASLGKIR-------------------------------------------AGGVCEV 414
Query: 460 RSVIKDSFIQSKQMGK---RENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQE 516
R + GK R N + G + D+ V + L Y L++V+ H L
Sbjct: 415 R--------RPHDAGKGFLRANTKVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGA 466
Query: 517 QKEDVQHSIISDL 529
+KEDV + I L
Sbjct: 467 KKEDVHYKEIPRL 479
>sp|Q1HVC1|DPOL_EBVA8 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain
AG876) GN=BALF5 PE=3 SV=1
Length = 1015
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 114/493 (23%), Positives = 184/493 (37%), Gaps = 155/493 (31%)
Query: 53 IVRMFGV-TMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNK-D 110
++++ G +G SVC +V G Y Y SAP+ + + A+++ ++ + D
Sbjct: 126 VIKLLGRRKADGASVCVNVFGQQAYFYASAPQGLD----------VEFAVLSALKASTFD 175
Query: 111 EIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTY---------KAFESNI 161
+ VE V ++++ G+ G ++ KIT S P H + FE+N+
Sbjct: 176 RRTPCRVSVEKVTRRSIMGY-GNHAGDYHKITLS-HPNSVCHVATWLQDKHGCRIFEANV 233
Query: 162 DFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAP 221
D RF++DND V W + R + R Q S+A
Sbjct: 234 DATRRFVLDNDFVTFGWY-----------------SCRRAIPRLQHRD--------SYAE 268
Query: 222 EEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNH--DPIIQIANMCIS 279
E D D+ + W + L+FDIEC G +G FP + D I+QI+ + S
Sbjct: 269 LEYDCEVGDLSVRREDSSWPS---YQALAFDIECLGEEG-FPTATNEADLILQISCVLWS 324
Query: 280 QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVF 339
G + + + TL TC I G +V +E LD AF +
Sbjct: 325 TGEEAGRYRRILLTLGTCEDIEGVEVYEFPSE---LDMLYAFFQ---------------- 365
Query: 340 TLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGV 399
IR+L +I TGYN+ NFD+PY+++RA+H+
Sbjct: 366 ----------------------------LIRDLSVEIVTGYNVANFDWPYILDRARHIYS 397
Query: 400 KNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDI 459
N LG+++ G V ++
Sbjct: 398 INPASLGKIR-------------------------------------------AGGVCEV 414
Query: 460 RSVIKDSFIQSKQMGK---RENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQE 516
R + GK R N + G + D+ V + L Y L++V+ H L
Sbjct: 415 R--------RPHDAGKGFLRANTKVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGA 466
Query: 517 QKEDVQHSIISDL 529
+KEDV + I L
Sbjct: 467 KKEDVHYKEIPRL 479
>sp|Q3KSP1|DPOL_EBVG DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain GD1)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 114/493 (23%), Positives = 184/493 (37%), Gaps = 155/493 (31%)
Query: 53 IVRMFGV-TMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNK-D 110
++++ G +G SVC +V G Y Y SAP+ + + A+++ ++ + D
Sbjct: 126 VIKLLGRRKADGASVCVNVFGQQAYFYASAPQGLD----------VEFAVLSALKASTFD 175
Query: 111 EIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTY---------KAFESNI 161
+ VE V ++++ G+ G ++ KIT S P H + FE+N+
Sbjct: 176 RRTPCRVSVEKVTRRSIMGY-GNHAGDYHKITLS-HPNSVCHVATWLQDKHGCRIFEANV 233
Query: 162 DFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAP 221
D RF++DND V W + R + R Q S+A
Sbjct: 234 DATRRFVLDNDFVTFGWY-----------------SCRRAIPRLQHRD--------SYAE 268
Query: 222 EEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNH--DPIIQIANMCIS 279
E D D+ + W + L+FDIEC G +G FP + D I+QI+ + S
Sbjct: 269 LEYDCEVGDLSVRREDSSWPS---YQALAFDIECLGEEG-FPTATNEADLILQISCVLWS 324
Query: 280 QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVF 339
G + + + TL TC I G +V +E LD AF +
Sbjct: 325 TGEEAGRYRRILLTLGTCEDIEGVEVYEFPSE---LDMLYAFFQ---------------- 365
Query: 340 TLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGV 399
IR+L +I TGYN+ NFD+PY+++RA+H+
Sbjct: 366 ----------------------------LIRDLSVEIVTGYNVANFDWPYILDRARHIYS 397
Query: 400 KNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDI 459
N LG+++ G V ++
Sbjct: 398 INPASLGKIR-------------------------------------------AGGVCEV 414
Query: 460 RSVIKDSFIQSKQMGK---RENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQE 516
R + GK R N + G + D+ V + L Y L++V+ H L
Sbjct: 415 R--------RPHDAGKGFLRANTKVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGA 466
Query: 517 QKEDVQHSIISDL 529
+KEDV + I L
Sbjct: 467 KKEDVHYKEIPRL 479
>sp|A7U6F2|DPOL_POV01 DNA polymerase OS=Pyramimonas orientalis virus GN=dpo PE=3 SV=1
Length = 1206
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 84/192 (43%), Gaps = 49/192 (25%)
Query: 324 TMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQ 383
T+ Q S KNV TL+TC I G VI CKTET L+ +W I +DPDI TGYNI
Sbjct: 375 TIHQYGSTKCSYKNVITLDTCNDIPGVDVITCKTETALIKEWCKLIHRVDPDIMTGYNIF 434
Query: 384 NFDFPYLINRAKHLGVKNFTF-LGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRR 442
FDF Y+ RA LG + + R++ +S K+ + S +G+ K + EG
Sbjct: 435 GFDFDYIYKRALELGCEKYVLGCSRLEGHKSKFKEKMLASSALGENLLKYVEMEG----- 489
Query: 443 ETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLR 502
RV DL+ V+ REY L
Sbjct: 490 -------------------------------------------RVFVDLMKVVQREYNLD 506
Query: 503 SYTLNSVSYHFL 514
SY L++V+ HF+
Sbjct: 507 SYKLDNVASHFI 518
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 53/230 (23%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKE--FNSTHCRAFKEALNRAIIADMRGNKD 110
I++MFGVT EG S+C +V F P+ Y+S+ + F T +E + + + + +
Sbjct: 39 IIKMFGVTEEGYSLCVNVTDFQPHFYISSKTKDKFTQTELDDLEEYIINKLPYNFKNS-- 96
Query: 111 EIQEAVLMVEIVQKQTVFGFWGEELENFLKIT-ESVFPTFPTHTYKAF------------ 157
L V+ V+K++++GF + ++K++ +++ + T +
Sbjct: 97 ------LSVKQVRKKSIWGFTNNVYKQYIKLSFQNIMSMYITRKMLQYRIKVGRVQVQFD 150
Query: 158 --ESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDD 215
ESNID +RF+ + I PG W ++ ++ + S+CQ+ I S ++
Sbjct: 151 LNESNIDPFLRFI--------HIQNIKPGGWISIDEYT-TDVDDELESKCQINITTSCEN 201
Query: 216 IVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDP 265
+ + +D + KVAP+ I+SFDIEC G FP P
Sbjct: 202 V-----QPLDCN--------------KVAPVNIMSFDIECTSSSGDFPVP 232
>sp|Q69025|DPOL_GPCMV DNA polymerase OS=Guinea pig cytomegalovirus (strain 22122) PE=3
SV=2
Length = 1117
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 148/379 (39%), Gaps = 111/379 (29%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEI 112
++RMFG T +G+SVC +V G Y Y E++ + E ++ + +++
Sbjct: 136 VIRMFGRTCDGSSVCVNVFGQPSYFYC----EYDGS------EGYLDNYLSTVLKETEDV 185
Query: 113 QEAVLMVEI--VQKQTVFGFWGEELENFLKITESVFPT-------FPTHTYKAFESNIDF 163
+ V ++ V K ++FG+ + +EN ++T + +P + + +E+ +D
Sbjct: 186 TKIVFTLDAQRVHKYSLFGYNTKYIENLYRVTLNNWPVCKRLAQNLQSRGLRVYEAGVDP 245
Query: 164 DIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEE 223
RF VD I W I +F + S C +EID E
Sbjct: 246 VARFCVDRKIPSFGWCVI----------KRFYARSSGLASFCDIEIDC----------EI 285
Query: 224 IDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPN--HDPIIQIANMCISQG 281
DV DD PE R SFDIEC FPD + D +IQI+ +C + G
Sbjct: 286 GDVEADDSDMSWPE--------YRCASFDIECMSGGDRFPDSSMVDDIVIQISVICYAVG 337
Query: 282 AS--ENIFV----------KNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGA 329
S E+ V +++FTL CAPI G+ V +E ELL + FI
Sbjct: 338 RSGAESDGVSGAEAAVREHQHLFTLGPCAPIPGTHVYEFPSEYELLLGF--FI------- 388
Query: 330 SENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPY 389
F + PDI TGYNI FD Y
Sbjct: 389 --------------------------------------FFKAYPPDILTGYNINLFDIKY 410
Query: 390 LINRAK---HLGVKNFTFL 405
L+ R + H V FT L
Sbjct: 411 LLQRMEKIYHANVSEFTKL 429
>sp|Q9DKT8|DPOL_ELHVK DNA polymerase catalytic subunit OS=Elephantid herpesvirus 1
(isolate Asian elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1041
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 140/362 (38%), Gaps = 97/362 (26%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEI 112
I+ + G T +G VC +VHG + Y YV+ E A ++A+++ M + E
Sbjct: 153 IISLIGKTEDGTDVCVNVHGQAYYFYVAMKDE------AATRDAVSKV----MSNLEKES 202
Query: 113 QEAVLMVEIVQKQTVFGFWGEELENFLKITESVF------PTFPTHTYKAFESNIDFDIR 166
+++ V K ++ GF + I + F ++ FE ++ + R
Sbjct: 203 SSCSYVMKSVNKMSLMGFNTNTSSYLMMIFSNHFVGKEAARNLKDLDFEIFEHLVEPNTR 262
Query: 167 FMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDV 226
F+VDN+ W + +R K SN C+LE+D D+ V
Sbjct: 263 FLVDNEFCSFGWYSLKTP--YVRQTSKDSN--------CELELDCCVGDL--------QV 304
Query: 227 STDDIVSHAPEGEWSKVAPLRILSFDIEC--AGRKGIFPDPNH--DPIIQIANMCISQGA 282
D + +W + ++FDIEC FPD + D IIQI+ C+
Sbjct: 305 LRDRV-------DWPN---YKCMAFDIECLSGSVDDAFPDATNPDDIIIQIS--CVCFDI 352
Query: 283 SENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLN 342
I +++FTL +CA I G + C +E EL++ + F+R G
Sbjct: 353 KNTIETQHLFTLGSCAEIPGVYIYECASEYELIESFLTFVRVYG---------------- 396
Query: 343 TCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNF 402
P+ TGYNI FD PY+I R ++ ++
Sbjct: 397 -------------------------------PNFITGYNINAFDIPYVIGRCRYYNIQCG 425
Query: 403 TF 404
F
Sbjct: 426 AF 427
>sp|P52367|DPOL_EHV2 DNA polymerase OS=Equine herpesvirus 2 (strain 86/87) GN=9 PE=3
SV=1
Length = 1008
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 135/358 (37%), Gaps = 89/358 (24%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPK----EFNSTHCRAFKEALNRAIIADMRGN 108
++++ G T + SVC +V Y YV P+ +F C +E N + R
Sbjct: 127 VLKLLGRTSDDRSVCVNVFRQELYFYVRVPEGLKLDFLIQQCS--RENFN---FSQGRYR 181
Query: 109 KDEIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFESNIDFDIRFM 168
++ + VL V+ + V+ + + F+ + + FE+N+D RF+
Sbjct: 182 YEKTSKRVLREYCVEAREVYRVFASS-QGFVDLLAG---GLTAAGCEVFETNVDAARRFI 237
Query: 169 VDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVST 228
+DN W + G + S T E D +
Sbjct: 238 IDNGFSTFGWYSCAAAVPRQGGAARDSWTEL-----------------------EYDCAA 274
Query: 229 DDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFV 288
D+ HA +W +LSFDIEC G G FP+ + D + + C+
Sbjct: 275 GDLEFHAGRADWPG---YNVLSFDIECLGENG-FPNASRDEDMILQISCVI--------- 321
Query: 289 KNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIV 348
W A G G + + N L TC I
Sbjct: 322 -----------------------------WKA-----GSGEAPRSVLLN---LGTCEEIE 344
Query: 349 GSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAK---HLGVKNFT 403
G +V C +E +LL + IR+ D + TGYNI NFDFPY+I+RA +L +K FT
Sbjct: 345 GVEVYQCPSELDLLYLFFTMIRDADVEFVTGYNISNFDFPYVIDRATQVYNLNLKEFT 402
>sp|Q9YUS2|DPOL_TUHV2 DNA polymerase OS=Tupaiid herpesvirus (strain 2) GN=DPOL PE=3 SV=1
Length = 1171
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 141/375 (37%), Gaps = 110/375 (29%)
Query: 44 PGSQLKPVP---IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFK--EALN 98
PG + + P ++R+FG T +G S+C +V G Y Y + S H R ++ + L
Sbjct: 132 PGYRHRITPCGVVLRLFGRTADGASLCVNVFGQDAYFYCRY-GDAQSLHDRLYRLSDTLE 190
Query: 99 RAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFL-------KITESVFPTFPT 151
A + +R V VQ+ +++G+ + + + +
Sbjct: 191 LAPVFHVR------------VRRVQRCSIYGYGTRPFADLYLVACGNWHVLKKMGQCLLD 238
Query: 152 HTYKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDV 211
+ FE + RF++D I W + +W R H +T +LE+D
Sbjct: 239 EGVEVFEVGVSPLTRFLLDKKIPSFGWCRL--RRWHARPAHGRLST-------AELEVDC 289
Query: 212 STDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPL-RILSFDIECAGRKGIFPDPNH--D 268
D+ DD+ W PL R LSFDIEC G FP + D
Sbjct: 290 EVADV---------RGVDDVA-------W----PLYRCLSFDIECLSGGGAFPVAENLDD 329
Query: 269 PIIQIANMCISQGASEN------IFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFI 322
+IQI+ +C G +E + +++FTL CAPI G V +E ELL F
Sbjct: 330 VVIQISCVCYPVGGTEEQRAAFPVAERHLFTLGPCAPIPGVLVYEFPSEFELL---CGFF 386
Query: 323 RTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNI 382
G+ A P+ TGYNI
Sbjct: 387 TFFGRYA--------------------------------------------PEFVTGYNI 402
Query: 383 QNFDFPYLINRAKHL 397
NFD+ YL+ RA+ +
Sbjct: 403 NNFDWRYLLTRAERV 417
>sp|Q9YUS3|DPOL_TUHV1 DNA polymerase OS=Tupaiid herpesvirus 1 (strain 1) GN=DPOL PE=3
SV=1
Length = 1171
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 141/375 (37%), Gaps = 110/375 (29%)
Query: 44 PGSQLKPVP---IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFK--EALN 98
PG + + P ++R+FG T +G S+C +V G Y Y + S H R ++ + L
Sbjct: 132 PGYRHRITPCGVVLRLFGRTADGASLCVNVFGQDAYFYCRY-GDAQSLHDRLYRLSDTLE 190
Query: 99 RAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFL-------KITESVFPTFPT 151
A + +R V VQ+ +++G+ + + + +
Sbjct: 191 LAPVFHVR------------VRRVQRCSIYGYGTRPFADLYLVACGNWHVLKKMGQCLLD 238
Query: 152 HTYKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDV 211
+ FE + RF++D I W + +W R H +T +LE+D
Sbjct: 239 EGVEVFEVGVSPLTRFLLDKKIPSFGWCRL--RRWHARPAHGRLST-------AELEVDC 289
Query: 212 STDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPL-RILSFDIECAGRKGIFPDPNH--D 268
D+ DD+ W PL R LSFDIEC G FP + D
Sbjct: 290 EVADV---------RGVDDVA-------W----PLYRCLSFDIECLSGGGAFPVAENLDD 329
Query: 269 PIIQIANMCISQGASEN------IFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFI 322
+IQI+ +C G +E + +++FTL CAPI G V +E ELL F
Sbjct: 330 VVIQISCVCYPVGGTEEQRAAFPVAERHLFTLGPCAPIPGVLVYEFPSEFELL---CGFF 386
Query: 323 RTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNI 382
G+ A P+ TGYNI
Sbjct: 387 TFFGRYA--------------------------------------------PEFVTGYNI 402
Query: 383 QNFDFPYLINRAKHL 397
NFD+ YL+ RA+ +
Sbjct: 403 NNFDWRYLLTRAERV 417
>sp|O71121|DPOL_RHCM6 DNA polymerase OS=Rhesus cytomegalovirus (strain 68-1) GN=UL54 PE=3
SV=1
Length = 1035
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 135/358 (37%), Gaps = 104/358 (29%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEI 112
++R FG T +G+S+C +V G Y Y C L R ++A + E
Sbjct: 124 VLRFFGATEQGHSICVNVFGQRSYFY-----------CEYADGDLLRDLLASVSDLVSEP 172
Query: 113 QEA-VLMVEIVQKQTVFGFWGEELENFLKITES-------VFPTFPTHTYKAFESNIDFD 164
+ A L + VQK +++G+ + N +++ S + + +E +D
Sbjct: 173 RMAYALTITPVQKMSIYGYGTSPIPNLFRVSISNWSMAKKIGEYLLENGIPVYEIRVDPL 232
Query: 165 IRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEI 224
R ++D + W + +W+ HK S C EID DI++
Sbjct: 233 TRLVIDKKMTTFGWCCVHRYEWR---THKSST--------CDFEIDCDVADIMA------ 275
Query: 225 DVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFP--DPNHDPIIQIANMCISQGA 282
VS D W R LSFDIEC G FP + D +IQI+ +C + G
Sbjct: 276 -VSDDT--------SWPV---YRCLSFDIECMSASGGFPAAEQTDDIVIQISCVCYNTGG 323
Query: 283 S---ENIFVK----NVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFV 335
+ EN ++FT+ +CAP+ G V +E E+L +G
Sbjct: 324 TGCEENTVFGTSGLHLFTIGSCAPLAGVDVYEFPSEYEML---------LG--------- 365
Query: 336 KNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
+ F + P TGYNI +FDF Y++ R
Sbjct: 366 -----------------------------FLIFFQRYSPCFVTGYNINSFDFKYILTR 394
>sp|Q85428|DPOL_RCMVM DNA polymerase OS=Rat cytomegalovirus (strain Maastricht) GN=UL54
PE=3 SV=2
Length = 1173
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 127/348 (36%), Gaps = 87/348 (25%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYV-SAPKEFNSTHCRAFKEALNRAIIADMRGNKDE 111
++R+FG T G VC +V G Y Y + P E R L A + +
Sbjct: 124 VIRLFGATALGTPVCVNVFGQKSYFYCENRPGE----DLRDVIHDLADASRSPGPLSASP 179
Query: 112 IQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFESNIDFDIRFMVDN 171
+ A L+ ++ + + N+ + V +A+E +D RF++D
Sbjct: 180 SRRAPLVAVRLRPGDIPHLYRVSFNNW-SMARKVGALMVQEGRRAYEIGVDPLARFLIDR 238
Query: 172 DIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDI 231
I W+ + +FS RC + S A E+D D+
Sbjct: 239 KIPSFGWLRV----------GRFSR-------RCNGQ--------TSTAVIELDCQVGDV 273
Query: 232 VSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPN--HDPIIQIANMCI---SQGASENI 286
V+ P W P R LSFDIEC G FP D +IQI+ +C GA
Sbjct: 274 VAGQPLPNWP---PYRCLSFDIECMSASGAFPQAEVLDDIVIQISCVCFVVGGSGAHRFT 330
Query: 287 FV-KNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCA 345
F K++FT+ +CAP+ D W V+T
Sbjct: 331 FAEKHLFTIGSCAPVE--------------DVW-------------------VYTF---- 353
Query: 346 PIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
+E E+L + F PD TGYNI FD YL++R
Sbjct: 354 ----------PSEYEMLLGFFIFFNRFSPDFLTGYNINGFDIKYLLHR 391
>sp|P09854|DPOL_HHV1S DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
SC16) GN=UL30 PE=3 SV=1
Length = 1235
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 110/495 (22%), Positives = 193/495 (38%), Gaps = 136/495 (27%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKE-------ALNRAIIADM 105
++ + G+T EG+ V HV+G Y Y++ + CRA ++ AL + A
Sbjct: 181 VITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCERMAAALRESPGASF 240
Query: 106 RGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKI---TESVFPTFPTH---TYKAFES 159
RG + EA E+V++ V+ ++ F ++ + V + K +E
Sbjct: 241 RGISADHFEA----EVVERTDVY-YYETRPALFYRVYVRSGRVLSYLCDNFCPAIKKYEG 295
Query: 160 NIDFDIRFMVDN-DIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVS 218
+D RF++DN V W + PG+ N R + S+D
Sbjct: 296 GVDATTRFILDNPGFVTFGWYRLKPGR-----------NNTLAQPRAPMAFGTSSD---- 340
Query: 219 HAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIEC-AGRKG--IFPDPNH--DPIIQI 273
E + + D++ A EG S + +++ FDIEC AG + FP H D +IQI
Sbjct: 341 ---VEFNCTADNL---AIEGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQI 394
Query: 274 ANMC--ISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASE 331
+ + +S A E++ +F+L +C + +
Sbjct: 395 SCLLYDLSTTALEHVL---LFSLGSC--------------------------DLPESHLN 425
Query: 332 NIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLI 391
+ + + T P+ V+ +E E+L + +++ P+ TGYNI NFD+P+L
Sbjct: 426 ELAARGLPT-----PV----VLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFL- 475
Query: 392 NRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFT 451
L ++ DI V D +
Sbjct: 476 -------------LAKLTDIYKVPLDGY-------------------------------- 490
Query: 452 FLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSY 511
GR+ R V + I KR +N G V D+ ++ + KL SY LN+V+
Sbjct: 491 --GRMNG-RGVFRVWDIGQSHFQKRSKIKVN--GMVSIDMYGIITDKIKLSSYKLNAVAE 545
Query: 512 HFLQEQKEDVQHSII 526
L+++K+D+ + I
Sbjct: 546 AVLKDKKKDLSYRDI 560
>sp|O36363|DPOL_ALHV1 DNA polymerase catalytic subunit OS=Alcelaphine herpesvirus 1
(strain C500) GN=9 PE=3 SV=1
Length = 1026
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 143/366 (39%), Gaps = 101/366 (27%)
Query: 44 PGSQLKPVP---IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRA 100
P Q VP +++++G T SVC +V G Y YV +N ++ ++ +
Sbjct: 139 PHLQADIVPSGIVLKLYGRTETNQSVCVNVFGQKVYFYV-----YNDSYSNLQRDVQH-- 191
Query: 101 IIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKIT-------ESVFPTFPTHT 153
I G++ L + QK+ + G+ E + +IT S+
Sbjct: 192 -ILQETGHR----STGLHLCSTQKKFLSGYSTSSHEVY-QITLGSSSAMRSLASGLEQIG 245
Query: 154 YKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVST 213
Y+ FE+N+D RF+VDN W T ++R ++ D
Sbjct: 246 YRVFEANVDASTRFIVDNKFSTFGWY-----------------TCTSPLARPRVHQD--- 285
Query: 214 DDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFP--DPNHDPII 271
+H E D S DI HA +W + ILSFDIEC G G FP D + D II
Sbjct: 286 ----AHTHLEYDCSVGDIQYHAERLDWPQ---YNILSFDIECLGESG-FPSADKDEDMII 337
Query: 272 QIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASE 331
QI S I T+G +
Sbjct: 338 QI---------------------------------------------SCVIWTVGGDKKQ 352
Query: 332 NIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLI 391
+ +V TC I +V +E +LL + +R+ ++ TGYNI NFDFPY++
Sbjct: 353 ECILLSV---GTCDLIENVKVYEFPSEMDLLYGFFTLLRDYGIEMITGYNICNFDFPYIL 409
Query: 392 NRAKHL 397
NRA+++
Sbjct: 410 NRAQNV 415
>sp|P07917|DPOL_HHV1A DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
Angelotti) GN=UL30 PE=1 SV=1
Length = 1235
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 112/495 (22%), Positives = 194/495 (39%), Gaps = 136/495 (27%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKE-------ALNRAIIADM 105
++ + G+T EG+ V HV+G Y Y++ + CRA ++ AL + A
Sbjct: 181 VITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCERMAAALRESPGASF 240
Query: 106 RGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKI---TESVFPTFPTH---TYKAFES 159
RG + EA E+V++ V+ ++ F ++ + V + K +E
Sbjct: 241 RGISADHFEA----EVVERTDVY-YYETRPALFYRVYVRSGRVLSYLCDNFCPAIKKYEG 295
Query: 160 NIDFDIRFMVDN-DIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVS 218
+D RF++DN V W + PG+ N R + S+D
Sbjct: 296 GVDATTRFILDNPGFVTFGWYRLKPGR-----------NNTLAQPRVPMAFGTSSD---- 340
Query: 219 HAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIEC-AGRKG--IFPDPNH--DPIIQI 273
E + + D++ A EG S + +++ FDIEC AG + FP H D +IQI
Sbjct: 341 ---VEFNCTADNL---AIEGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQI 394
Query: 274 ANMC--ISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASE 331
+ + +S A E++ +F+L +C E+ L + + + T
Sbjct: 395 SCLLYDLSTTALEHVL---LFSLGSCD----------LPESHLTELAARGLPT------- 434
Query: 332 NIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLI 391
P+ V+ +E E+L + +++ P+ TGYNI NFD+P+L
Sbjct: 435 --------------PV----VLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFL- 475
Query: 392 NRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFT 451
L ++ DI V D +
Sbjct: 476 -------------LAKLTDIYKVPLDGY-------------------------------- 490
Query: 452 FLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSY 511
GR+ R V + I KR +N G V D+ ++ + KL SY LN+V+
Sbjct: 491 --GRMNG-RGVFRVWDIGQSHFQKRSKIKVN--GMVNIDMYGIITDKIKLSSYKLNAVAE 545
Query: 512 HFLQEQKEDVQHSII 526
L+++K+D+ + I
Sbjct: 546 AVLKDKKKDLSYRDI 560
>sp|P27172|DPOL_MUHVS DNA polymerase OS=Murid herpesvirus 1 (strain Smith) GN=UL54 PE=3
SV=1
Length = 1097
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 139/384 (36%), Gaps = 118/384 (30%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEI 112
++RMFG T EG SVC +V G Y Y C + + + D+ D++
Sbjct: 124 VIRMFGATDEGVSVCVNVFGQKAYFY-----------CERMQSEDLKNTVYDI---ADKV 169
Query: 113 QEAV----LMVEIVQKQTVFGFWGEELENFLKIT-------ESVFPTFPTHTYKAFESNI 161
E + + V K + +G+ + N +++ + K +E +
Sbjct: 170 PEPCSPFSVSISPVTKSSFYGYGLGHIPNLYRLSFNNWNMCRKIGKRMLEEGRKVYELGV 229
Query: 162 DFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAP 221
D RF++D +IP W L ++S VSR QLEID DI+
Sbjct: 230 DPLARFLIDR--------KIPSFGWCL--ARRYSVRAAGYVSRAQLEIDCDVADIL---- 275
Query: 222 EEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNH--DPIIQIANMCIS 279
P E S R LSFDIEC G FP + D IIQI+ +C
Sbjct: 276 --------------PIEEQSNWPFYRCLSFDIECMSGTGAFPAAENVDDIIIQISCVCFG 321
Query: 280 QG-------------ASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMG 326
G ++ + ++FT+ CAPI ++ +E E+L + F+
Sbjct: 322 VGEMVHHAYDVHADLSTPAVPENHLFTIGPCAPIPDVKIYTFPSEYEMLRGFFIFL---- 377
Query: 327 QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFD 386
W + P+ TGYNI FD
Sbjct: 378 -------------------------------------SWYS------PEFITGYNINGFD 394
Query: 387 FPYLINRAKHL---GVKNFTFLGR 407
Y++ RA+ L V FT L R
Sbjct: 395 IKYILTRAEKLYKMDVGQFTKLRR 418
>sp|P04292|DPOL_HHV1K DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
KOS) GN=UL30 PE=1 SV=1
Length = 1235
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 110/495 (22%), Positives = 193/495 (38%), Gaps = 136/495 (27%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKE-------ALNRAIIADM 105
++ + G+T EG+ V HV+G Y Y++ + CRA ++ AL + A
Sbjct: 181 VITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCERMAAALRESPGASF 240
Query: 106 RGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKI---TESVFPTFPTH---TYKAFES 159
RG + EA E+V++ V+ ++ F ++ + V + K +E
Sbjct: 241 RGISADHFEA----EVVERTDVY-YYETRPALFYRVYVRSGRVLSYLCDNFCPAIKKYEG 295
Query: 160 NIDFDIRFMVDN-DIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVS 218
+D RF++DN V W + PG+ N R + S+D
Sbjct: 296 GVDATTRFILDNPGFVTFGWYRLKPGR-----------NNTLAQPRAPMAFGTSSD---- 340
Query: 219 HAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIEC-AGRKG--IFPDPNH--DPIIQI 273
E + + D++ A EG S + +++ FDIEC AG + FP H D +IQI
Sbjct: 341 ---VEFNCTADNL---AIEGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQI 394
Query: 274 ANMC--ISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASE 331
+ + +S A E++ +F+L +C + +
Sbjct: 395 SCLLYDLSTTALEHVL---LFSLGSC--------------------------DLPESHLN 425
Query: 332 NIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLI 391
+ + + T P+ V+ +E E+L + +++ P+ TGYNI NFD+P+L
Sbjct: 426 ELAARGLPT-----PV----VLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFL- 475
Query: 392 NRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFT 451
L ++ DI V D +
Sbjct: 476 -------------LAKLTDIYKVPLDGY-------------------------------- 490
Query: 452 FLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSY 511
GR+ R V + I KR +N G V D+ ++ + KL SY LN+V+
Sbjct: 491 --GRMNG-RGVFRVWDIGQSHFQKRSKIKVN--GMVNIDMYGIITDKIKLSSYKLNAVAE 545
Query: 512 HFLQEQKEDVQHSII 526
L+++K+D+ + I
Sbjct: 546 AVLKDKKKDLSYRDI 560
>sp|Q9QSK2|DPOL_IIV6 DNA polymerase 037L OS=Invertebrate iridescent virus 6 GN=DPOL PE=3
SV=1
Length = 1273
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 116/502 (23%), Positives = 185/502 (36%), Gaps = 144/502 (28%)
Query: 54 VRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTH------------------CRAFKE 95
+R++G+T +G ++C V+ F P+++V P N K
Sbjct: 27 LRIYGITDDGKTICLIVNDFKPFVHVELPSSINWRQKIGGQPKVQKIMDYLNFILGDLKP 86
Query: 96 ALNRAIIAD----MRGNKDEIQEAVLMVEIVQKQTVFGFWGEELENF---LKITESVFPT 148
NR I D N + V + +F + ++N LK T V P
Sbjct: 87 VKNRTIFIDKYKLYGSNYVQTSPGVFQRKKFPYLVLFFESRKHIKNLEYKLKNTVDV-PG 145
Query: 149 FPTHTYKAFESNIDFDIRFMVDNDIVGCNWIEIP-PGKWQLRGQHKFSNTNRPCVSRCQL 207
F E+N+ ++ V+ ++ WI G+ L G + + + C
Sbjct: 146 FGKIKLNVRETNVSPILQLCVERNLPSAGWIGFKVEGRGALAGYGELVEEKKK-FTDCDE 204
Query: 208 EIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNH 267
E +S + I S I H P +++++DIE G FPD
Sbjct: 205 EYVISKNYIYS------------IDKHVP-------VKAKVMAWDIEVYSEDGNFPDA-- 243
Query: 268 DPIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQ 327
++ N+ VF ++ IVG+ ++ T+G
Sbjct: 244 ---MKPGNV--------------VFQISCIFFIVGTSY------------KQKYLLTLGD 274
Query: 328 GASENIFVKNVFTLNTCAPI----VGSQVICCK--TETELLDKWSAFIRELDPDIFTGYN 381
T PI G I CK TE +L+ +S+ + P I TG+N
Sbjct: 275 PLE-----------YTTTPINEEGCGKDTIVCKFKTEEDLIIAFSSLQKREKPHITTGWN 323
Query: 382 IQNFDFPYLINRAK-HLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSD 440
I NFD +L+ RAK H + NF G KD
Sbjct: 324 IFNFDTTFLLKRAKLHRCLPNFLLQGFPKDQ----------------------------- 354
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
LG+ K+I+ QSK G + K I+ EG +C DL+ V+ +E+K
Sbjct: 355 ------------LGKEKEIK-------WQSKAYGTTDLKFIDCEGILCIDLMDVVQKEHK 395
Query: 501 LRSYTLNSVSYHFLQEQKEDVQ 522
L SY+LN V+ HFL +K+D++
Sbjct: 396 LDSYSLNFVAKHFLGSKKDDLK 417
>sp|P04293|DPOL_HHV11 DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain 17)
GN=UL30 PE=1 SV=2
Length = 1235
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 109/495 (22%), Positives = 192/495 (38%), Gaps = 136/495 (27%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKE-------ALNRAIIADM 105
++ + G+T EG+ V HV+G Y Y++ + CRA ++ AL + A
Sbjct: 181 VITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCERMAAALRESPGASF 240
Query: 106 RGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKI---TESVFPTFPTH---TYKAFES 159
RG + EA E+V++ V+ ++ F ++ + V + K +E
Sbjct: 241 RGISADHFEA----EVVERTDVY-YYETRPALFYRVYVRSGRVLSYLCDNFCPAIKKYEG 295
Query: 160 NIDFDIRFMVDN-DIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVS 218
+D RF++DN V W + PG+ N + S+D
Sbjct: 296 GVDATTRFILDNPGFVTFGWYRLKPGR-----------NNTLAQPAAPMAFGTSSD---- 340
Query: 219 HAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIEC-AGRKG--IFPDPNH--DPIIQI 273
E + + D++ A EG S + +++ FDIEC AG + FP H D +IQI
Sbjct: 341 ---VEFNCTADNL---AIEGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQI 394
Query: 274 ANMC--ISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASE 331
+ + +S A E++ +F+L +C + +
Sbjct: 395 SCLLYDLSTTALEHVL---LFSLGSC--------------------------DLPESHLN 425
Query: 332 NIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLI 391
+ + + T P+ V+ +E E+L + +++ P+ TGYNI NFD+P+L
Sbjct: 426 ELAARGLPT-----PV----VLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFL- 475
Query: 392 NRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFT 451
L ++ DI V D +
Sbjct: 476 -------------LAKLTDIYKVPLDGY-------------------------------- 490
Query: 452 FLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSY 511
GR+ R V + I KR +N G V D+ ++ + KL SY LN+V+
Sbjct: 491 --GRMNG-RGVFRVWDIGQSHFQKRSKIKVN--GMVNIDMYGIITDKIKLSSYKLNAVAE 545
Query: 512 HFLQEQKEDVQHSII 526
L+++K+D+ + I
Sbjct: 546 AVLKDKKKDLSYRDI 560
>sp|P07918|DPOL_HHV21 DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain
186) GN=UL30 PE=3 SV=1
Length = 1240
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 113/510 (22%), Positives = 189/510 (37%), Gaps = 166/510 (32%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRA-------FKEALNRAIIADM 105
++ + G+T EG+ V HV+G Y Y++ + CRA AL + A
Sbjct: 182 VITLLGLTPEGHRVAVHVYGTRQYFYMNKAEVDRHLQCRAPRDLCERLAAALRESPGASF 241
Query: 106 RGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAF-------- 157
RG + EA E+V++ V+ + T PT Y+ F
Sbjct: 242 RGISADHFEA----EVVERADVY----------------YYETRPTLYYRVFVRSGRALA 281
Query: 158 -------------ESNIDFDIRFMVDN-DIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVS 203
E +D RF++DN V W + PG+ N P
Sbjct: 282 YLCDNFCPAIRKYEGGVDATTRFILDNPGFVTFGWYRLKPGR-----------GNAPAQP 330
Query: 204 RCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIEC-AGRKG-- 260
R S+D E + + D++ A EG + +++ FDIEC AG +
Sbjct: 331 RPPTAFGTSSD-------VEFNCTADNL---AVEGAMCDLPAYKLMCFDIECKAGGEDEL 380
Query: 261 IFP--DPNHDPIIQIANMC--ISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLD 316
FP + D +IQI+ + +S A E+I +F+L +C E+ L D
Sbjct: 381 AFPVAERPEDLVIQISCLLYDLSTTALEHIL---LFSLGSCD----------LPESHLSD 427
Query: 317 KWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDI 376
+ + AP+ V+ +E E+L + F+++ P+
Sbjct: 428 ---------------------LASRGLPAPV----VLEFDSEFEMLLAFMTFVKQYGPEF 462
Query: 377 FTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFE 436
TGYNI NFD+P+++ ++ +I V D +
Sbjct: 463 VTGYNIINFDWPFVLT--------------KLTEIYKVPLDGY----------------- 491
Query: 437 GNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLL 496
GR+ R V + I KR +N G V D+ ++
Sbjct: 492 -----------------GRMNG-RGVFRVWDIGQSHFQKRSKIKVN--GMVNIDMYGIIT 531
Query: 497 REYKLRSYTLNSVSYHFLQEQKEDVQHSII 526
+ KL SY LN+V+ L+++K+D+ + I
Sbjct: 532 DKVKLSSYKLNAVAEAVLKDKKKDLSYRDI 561
>sp|P28857|DPOL_HHV6U DNA polymerase OS=Human herpesvirus 6A (strain Uganda-1102) GN=U38
PE=3 SV=1
Length = 1012
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 133/352 (37%), Gaps = 102/352 (28%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEI 112
++RMFG T +G +C +V G Y Y R+ K +N ++ E+
Sbjct: 116 VIRMFGRTEDGEKICVNVFGQEQYFYCEC------VDGRSLKATINNLMLTG------EV 163
Query: 113 QEAV-LMVEIVQKQTVFGFWGEELENFLKIT-------ESVFPTFPTHTYKAFESNIDFD 164
+ + ++E K +++G+ + N K++ + + + +E ++D
Sbjct: 164 KMSCSFVIEPADKLSLYGYNANTVVNLFKVSFGNFYVSQRIGKILQNEGFVVYEIDVDVL 223
Query: 165 IRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEI 224
RF VDN + W + Q G+ S ++EI+ D+VS
Sbjct: 224 TRFFVDNGFLSFGWYNVKKYIPQDMGKG----------SNLEVEINCHVSDLVS------ 267
Query: 225 DVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNH--DPIIQIANMCI-SQG 281
+D V+ G WS FDIEC G+ G FPD + D +IQI+ + ++G
Sbjct: 268 ---LED-VNWPLYGCWS---------FDIECLGQNGNFPDAENLGDIVIQISVISFDTEG 314
Query: 282 ASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTL 341
+ +++FTL TC I G + +E ELL + F+R
Sbjct: 315 DRDE---RHLFTLGTCEKIDGVHIYEFASEFELLLGFFIFLRIES--------------- 356
Query: 342 NTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
P+ TGYNI NFD YL R
Sbjct: 357 --------------------------------PEFITGYNINNFDLKYLCIR 376
>sp|P89453|DPOL_HHV2H DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain
HG52) GN=UL30 PE=3 SV=1
Length = 1240
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 114/510 (22%), Positives = 188/510 (36%), Gaps = 166/510 (32%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRA-------FKEALNRAIIADM 105
++ + G+T EG+ V HV+G Y Y++ + CRA AL + A
Sbjct: 182 VITLLGLTPEGHRVAVHVYGTRQYFYMNKAEVDRHLQCRAPRDLCERLAAALRESPGASF 241
Query: 106 RGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAF-------- 157
RG + EA E+V++ V+ + T PT Y+ F
Sbjct: 242 RGISADHFEA----EVVERADVY----------------YYETRPTLYYRVFVRSGRALA 281
Query: 158 -------------ESNIDFDIRFMVDN-DIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVS 203
E +D RF++DN V W + PG+ N P
Sbjct: 282 YLCDNFCPAIRKYEGGVDATTRFILDNPGFVTFGWYRLKPGR-----------GNAPAQP 330
Query: 204 RCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIEC-AGRKG-- 260
R S+D E + + D++ A EG + +++ FDIEC AG +
Sbjct: 331 RPPTAFGTSSD-------VEFNCTADNL---AVEGAMCDLPAYKLMCFDIECKAGGEDEL 380
Query: 261 IFP--DPNHDPIIQIANMC--ISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLD 316
FP + D +IQI+ + +S A E+I +F+L +C E+ L D
Sbjct: 381 AFPVAERPEDLVIQISCLLYDLSTTALEHIL---LFSLGSCD----------LPESHLSD 427
Query: 317 KWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDI 376
S AP+ V+ +E E+L + F+++ P+
Sbjct: 428 LASR---------------------GLPAPV----VLEFDSEFEMLLAFMTFVKQYGPEF 462
Query: 377 FTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFE 436
TGYNI NFD+P+++ ++ +I V D +
Sbjct: 463 VTGYNIINFDWPFVLT--------------KLTEIYKVPLDGY----------------- 491
Query: 437 GNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLL 496
GR+ R V + I KR +N G V D+ ++
Sbjct: 492 -----------------GRMNG-RGVFRVWDIGQSHFQKRSKIKVN--GMVNIDMYGIIT 531
Query: 497 REYKLRSYTLNSVSYHFLQEQKEDVQHSII 526
+ KL SY LN+V+ L+++K+D+ + I
Sbjct: 532 DKVKLSSYKLNAVAEAVLKDKKKDLSYRDI 561
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 121/536 (22%), Positives = 194/536 (36%), Gaps = 160/536 (29%)
Query: 1 PECQQTSDKWSRAPPP-ELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVP-IVRMFG 58
P Q ++K RAP + + ++F SIE+ IP + P ++++FG
Sbjct: 67 PSLSQVAEKELRAPLKFHIYDASESLLFTD-SIEN-----IPFQYRHFVIPSGNVIKLFG 120
Query: 59 VTMEGNSVCCHVHGFSPYLY--VSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAV 116
T G VC +V G + Y Y KE NS C N EI+ +
Sbjct: 121 KTECGKKVCINVFGQNSYFYCEYQCKKELNSRICSLL--------------NSSEIKMSC 166
Query: 117 -LMVEIVQKQTVFGFWGEELENFLKITESVF-------PTFPTHTYKAFESNIDFDIRFM 168
+E V K +G+ E ++N K++ S F +E+ ++ RF
Sbjct: 167 SFSIESVTKYNFYGYNTEPIKNLFKLSFSNFYISNRIGKILLNEGVSVYEAEVEILNRFF 226
Query: 169 VDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVST 228
+DN++ W +I Q +F+ + S ++E++ D+
Sbjct: 227 IDNNLKSFGWYQINYLSIQ-----EFAKS-----SNVEIELNCHVSDLFL---------- 266
Query: 229 DDIVSHAPEGEWSKVAPLR-ILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIF 287
E W PL SFDIEC + G FPD
Sbjct: 267 ------LKEDSW----PLYDCCSFDIECLSQNGNFPD----------------------- 293
Query: 288 VKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPI 347
Q++ S+ I + + N K++FTL TC I
Sbjct: 294 --------------AEQMVT-----------SSLISVIDFDSEGNYQSKHLFTLGTCEQI 328
Query: 348 VGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGR 407
G + +E ELL + F++ P+I TGYNI NFD YL R +
Sbjct: 329 EGVFIYEFASEFELLYAFFLFLKCKSPEILTGYNIINFDLKYLCTRME------------ 376
Query: 408 VKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSF 467
K NFE + F+ L R K SVI +
Sbjct: 377 -----------------------KIYNFE----------IGGFSKLKRGK--FSVIV-PY 400
Query: 468 IQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQH 523
Q K+ K +N G +CFD+ V + ++Y L++++ L ++KE++ +
Sbjct: 401 EQHKKFLNSLTK-VNMSGILCFDMYNVYSSKISAQNYKLDTIAKLCLNQEKENLSY 455
>sp|Q6SW77|DPOL_HCMVM DNA polymerase catalytic subunit OS=Human cytomegalovirus (strain
Merlin) GN=UL54 PE=3 SV=1
Length = 1242
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 138/358 (38%), Gaps = 79/358 (22%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEI 112
++R FG T G S+C +V G Y Y E++ T + L I + +
Sbjct: 133 VLRFFGATEHGYSICVNVFGQRSYFYC----EYSDT------DRLREVIASVGELVPEPR 182
Query: 113 QEAVLMVEIVQKQTVFGFWGEELENFLKITES-------VFPTFPTHTYKAFESNIDFDI 165
+ V K +++G+ + + ++ S + + +E +D
Sbjct: 183 TPYAVSVTPATKTSIYGYGTRPVPDLQCVSISNWTMARKIGEYLLEQGFPVYEVRVDPLT 242
Query: 166 RFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEID 225
R ++D I W + W+ +G+ S C +E+D D+V+ P++
Sbjct: 243 RLVIDRRITTFGWCSVNRYDWRQQGR----------ASTCDIEVDCDVSDLVA-VPDD-- 289
Query: 226 VSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFP--DPNHDPIIQIANMCISQGAS 283
W + R LSFDIEC +G FP + + D +IQI+ +C G +
Sbjct: 290 ------------SSWPR---YRCLSFDIECMSGEGGFPCAEKSDDIVIQISCVCYETGGN 334
Query: 284 ENI--FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTL 341
+ + N G+ C +E + ++FT+
Sbjct: 335 TAVDQGIPN-----------GNDGRGCTSEGVIFGHSGL----------------HLFTI 367
Query: 342 NTCAPIVGSQVICCK--TETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHL 397
TC VG V + +E ELL + F + P TGYNI +FD Y++ R ++L
Sbjct: 368 GTCGQ-VGPDVDVYEFPSEYELLLGFMLFFQRYAPAFVTGYNINSFDLKYILTRLEYL 424
>sp|P08546|DPOL_HCMVA DNA polymerase OS=Human cytomegalovirus (strain AD169) GN=UL54 PE=1
SV=2
Length = 1242
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 138/358 (38%), Gaps = 79/358 (22%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEI 112
++R FG T G S+C +V G Y Y E++ T + L I + +
Sbjct: 133 VLRFFGATEHGYSICVNVFGQRSYFYC----EYSDT------DRLREVIASVGELVPEPR 182
Query: 113 QEAVLMVEIVQKQTVFGFWGEELENFLKITES-------VFPTFPTHTYKAFESNIDFDI 165
+ V K +++G+ + + ++ S + + +E +D
Sbjct: 183 TPYAVSVTPATKTSIYGYGTRPVPDLQCVSISNWTMARKIGEYLLEQGFPVYEVRVDPLT 242
Query: 166 RFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEID 225
R ++D I W + W+ +G+ S C +E+D D+V+ P++
Sbjct: 243 RLVIDRRITTFGWCSVNRYDWRQQGR----------ASTCDIEVDCDVSDLVA-VPDD-- 289
Query: 226 VSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFP--DPNHDPIIQIANMCISQGAS 283
W + R LSFDIEC +G FP + + D +IQI+ +C G +
Sbjct: 290 ------------SSWPR---YRCLSFDIECMSGEGGFPCAEKSDDIVIQISCVCYETGGN 334
Query: 284 ENI--FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTL 341
+ + N G+ C +E + ++FT+
Sbjct: 335 TAVDQGIPN-----------GNDGRGCTSEGVIFGHSGL----------------HLFTI 367
Query: 342 NTCAPIVGSQVICCK--TETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHL 397
TC VG V + +E ELL + F + P TGYNI +FD Y++ R ++L
Sbjct: 368 GTCGQ-VGPDVDVYEFPSEYELLLGFMLFFQRYAPAFVTGYNINSFDLKYILTRLEYL 424
>sp|Q9QJ32|DPOL_HHV6Z DNA polymerase catalytic subunit OS=Human herpesvirus 6B (strain
Z29) GN=U38 PE=3 SV=1
Length = 1012
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 128/351 (36%), Gaps = 100/351 (28%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEI 112
++RMFG + +G +C +V G Y Y C +A I ++ +
Sbjct: 116 VIRMFGRSEDGEKICVNVFGQEQYFY-----------CECVDGKSLKATINNLMLTGEVK 164
Query: 113 QEAVLMVEIVQKQTVFGFWGEELENFLKIT-------ESVFPTFPTHTYKAFESNIDFDI 165
++E K +++G+ + N K++ + + + +E ++D
Sbjct: 165 MSCSFVIEPADKLSLYGYNANTVVNLFKVSFGNFYVSQRIGKILQNEGFVVYEIDVDVLT 224
Query: 166 RFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEID 225
RF VDN + W + Q G+ S ++EI+ D+VS
Sbjct: 225 RFFVDNGFLSFGWYNVKKYIPQDMGKG----------SNLEVEINCHVSDLVSL------ 268
Query: 226 VSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNH--DPIIQIANMCI-SQGA 282
+ V+ G WS FDIEC G+ G FPD + D +IQI+ + ++G
Sbjct: 269 ----ENVNWPLYGCWS---------FDIECLGQNGNFPDAENLGDIVIQISVVSFDTEGD 315
Query: 283 SENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLN 342
+ +++FTL TC I G + +E ELL + F+R
Sbjct: 316 RDE---RHLFTLGTCEQIDGVHIYEFASEFELLLGFFIFLRIES---------------- 356
Query: 343 TCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
P+ TGYNI NFD YL R
Sbjct: 357 -------------------------------PEFITGYNINNFDLKYLCIR 376
>sp|Q6UDK1|DPOL_PSHV1 DNA polymerase catalytic subunit OS=Psittacid herpesvirus 1
(isolate Amazon parrot/-/97-0001/1997) GN=UL30 PE=3 SV=1
Length = 1081
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 107/499 (21%), Positives = 184/499 (36%), Gaps = 159/499 (31%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLY-----------VSAPKEFNSTHCRAFKEALNRAI 101
+V + G++ G V HV+G PY Y +S P E + + A +R
Sbjct: 137 VVTLLGMSACGKRVAVHVYGQQPYFYAKKSEIDASIGISTPGELAHAMAASLRSAASR-- 194
Query: 102 IADMRGNKDEIQEAVLMVEIVQKQTV-FGFWGEELENFLKITESVFPTFPTHTY----KA 156
R E ++++VQ++ + + EE +K + + +F + K
Sbjct: 195 ----RSTFVEATAESFVIDVVQRRDIYYYESREEEYYRVKSCSAKYISFLCDNFCRGVKK 250
Query: 157 FESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDI 216
+E ID RF VDN++ W ++F +PC Q+ D+
Sbjct: 251 YEGGIDATTRFAVDNELFTFGW-------------YRF----KPCAGAIQIR------DV 287
Query: 217 VSHAPE---EIDVSTDDIVSHAPEGEWSKVAPLRILSFDIEC-AGRKGIFPDPN----HD 268
H+ E++ + +++ +W ++LSFDIEC AG P D
Sbjct: 288 TRHSTSANVEVNCTVENLEVIRGRADWPD---YKLLSFDIECKAGGANDLAFPTAERIED 344
Query: 269 PIIQIANMCISQGASENIFVKNVFTLNTCA---PIVGSQVIC-CKTETELLDKWSAFIRT 324
+IQI+ + +S + + + +F+L TC I +C C +E ELL
Sbjct: 345 VVIQISAV-VSSLLTRRVEHEILFSLGTCQLPEDIADHVKVCECGSEFELL--------- 394
Query: 325 MGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQN 384
+C T F+++ P+ TGYNI
Sbjct: 395 ----------------------------LCFMT----------FLKQFSPEFVTGYNILG 416
Query: 385 FDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRET 444
FD+ ++ N ++ +I + D + ++ G T
Sbjct: 417 FDWGFMYN--------------KMVNIYGMRLDGYGKANAWG-----------------T 445
Query: 445 LGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSY 504
V++ GR GK N IN G V FD+ ++ ++ KL SY
Sbjct: 446 FKVQDMPHSGR------------------GKFRNVKIN--GIVNFDMFSIIYQKIKLCSY 485
Query: 505 TLNSVSYHFLQEQKEDVQH 523
LNSV+ L E+K D+ +
Sbjct: 486 KLNSVAETVLGEKKHDLSY 504
>sp|Q196U0|DPOL_IIV3 DNA polymerase 120R OS=Invertebrate iridescent virus 3 GN=IIV3-120R
PE=3 SV=1
Length = 1141
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 48/195 (24%)
Query: 328 GASENIFVKNVFTL-NTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFD 386
G EN + + +L N IVG+ ++ TE +LL + + E +P++ TGYNI NFD
Sbjct: 260 GGVENEVERYLLSLGNPTEQIVGATILRYSTEKKLLMGFRDLVNEKNPNVITGYNIFNFD 319
Query: 387 FPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLG 446
PYL++ R+V K F++ Q G +N+
Sbjct: 320 IPYLMD-------------------RTVYKSIFVEWAQQGFAKNRP-------------- 346
Query: 447 VKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTL 506
G ++IR S +E K ++ EGR+ DLL V+ R++KL Y L
Sbjct: 347 -------GIPREIR-------WSSSAYKNQEFKYLDCEGRLYIDLLPVVQRDFKLNDYKL 392
Query: 507 NSVSYHFLQEQKEDV 521
+VS F+ E K+D+
Sbjct: 393 KTVSTFFIGETKDDL 407
>sp|P30321|DPOL_PBCV1 DNA polymerase OS=Paramecium bursaria Chlorella virus 1 GN=DPO PE=3
SV=2
Length = 913
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 95/479 (19%), Positives = 165/479 (34%), Gaps = 145/479 (30%)
Query: 54 VRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQ 113
+ +FG T EG +VC F+PY + P+ ++ F I + D ++
Sbjct: 27 INIFGKTAEGKTVCVQTK-FTPYFLLEVPESWSPARTNLF--------ITETAMKYDAVR 77
Query: 114 EAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFP---------THTYKAFESNIDFD 164
L +++ ++GF G ++ N ++ VF T Y+ +ES++D
Sbjct: 78 PMCLST---KRKNMWGFDGGKMRNMVQF---VFKTQAQLRKAKYRLKDQYQIYESSVDPI 131
Query: 165 IRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEI 224
IR +I +WI + Q + SN+
Sbjct: 132 IRVFHLRNINPADWIRVSKA---YPAQTRISNS--------------------------- 161
Query: 225 DVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNH--DPIIQIANMCISQGA 282
D+ + H E V PL I S+DIE + FP + D IQIA G
Sbjct: 162 DIEVETSFQHLGPVEDKTVPPLVIASWDIETYSKDRKFPLAENPTDYCIQIATTFQKYGE 221
Query: 283 SENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLN 342
E +V+ C +T
Sbjct: 222 PEPY----------------RRVVVCYKQT------------------------------ 235
Query: 343 TCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNF 402
AP+ G ++I C E+++++ W +++ D+ GYN +D Y+ R + V +
Sbjct: 236 --APVEGVEIISCLEESDVMNTWMKILQDEKTDVSIGYNTWQYDLRYVHGRT-QMCVDDM 292
Query: 403 TFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSV 462
T +VK + LGR+
Sbjct: 293 TGEDKVK----------------------------------------LSNLGRLLSGGGE 312
Query: 463 IKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDV 521
+ + + S G+ + ++ G + DLL + L SY+LN+VS +L +QK D+
Sbjct: 313 VVERDLSSNAFGQNKFFLLDMPGVMQIDLLQWFRKNRNLESYSLNNVSKLYLGDQKNDL 371
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 33/221 (14%)
Query: 35 YTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNST------ 88
+ G+ +P +L VP++R+FG+ E +VCC +H PY+YV F T
Sbjct: 21 FVGKDLPTA-NEELTTVPVIRVFGLNEEAETVCCFIHNVFPYIYVEY-SSFAETLDLEVP 78
Query: 89 -HCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKIT----- 142
+ ++N A+ R N + + AV V++V+ +G+ + FLKI
Sbjct: 79 DFLSQLQTSINYALALAARANPETYKPAVQSVQLVKGIPFYGY-SFCFQKFLKICLFSPK 137
Query: 143 --ESVFPTFP-----THTYKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFS 195
+ + F + +ES++ + ++FMVD+++ GC I++ + F
Sbjct: 138 NRDRLVDLFRQGAILNKVIQVYESHLPYLLQFMVDHNLYGCAPIDLDDSIIKRDDLLSF- 196
Query: 196 NTNRPCVSRCQLEIDVSTDDIVSHA-PEEIDVSTDDIVSHA 235
C +E+ VS + I++ E ++ TD +HA
Sbjct: 197 ---------CNVEVHVSPNAILNACWLSERNIHTDLYETHA 228
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 40/151 (26%)
Query: 246 LRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQV 305
+RIL+ ++ C G+ PDP D I C E++
Sbjct: 651 VRILALELFCCSHGGLTPDPTKDSI-----ECCFWAYQEDV------------------- 686
Query: 306 ICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKW 365
+ ++D+ FI + + AS + F + + +C V+ +E EL+++
Sbjct: 687 -----NSSMIDR-VGFI-VVDKSASNSSFGR---SFPSCT------VLVVNSELELINEV 730
Query: 366 SAFIRELDPDIFTGYNIQNFDFPYLINRAKH 396
R+LDP I GY + N + YLI RA +
Sbjct: 731 IGLNRQLDPTIVCGYEVHNSSWGYLIERASY 761
>sp|Q4JQU7|DPOL_VZVO DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Oka vaccine) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 106/507 (20%), Positives = 192/507 (37%), Gaps = 144/507 (28%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRA-------FKEALNRAII--- 102
++ + G++ G V HV+G Y Y++ + + R+ E L ++I
Sbjct: 146 VITLLGMSRCGKRVAVHVYGICQYFYINKAEVDTACGIRSCSELSVLLAECLRSSMITQN 205
Query: 103 -ADMRGNKDEIQEA--------VLMVEIVQKQTVFGFWGEELENFLKIT--ESVFPTFPT 151
A + G+K+ VE++++ V+ ++ + F ++ S F +
Sbjct: 206 DATLNGDKNAFHGTSFKSASPESFRVEVIERTDVY-YYDTQPCAFYRVYSPSSKFTNYLC 264
Query: 152 HTY----KAFESNIDFDIRFMVDN-DIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQ 206
+ K +E +D RF++DN V W ++ PG R + RP +
Sbjct: 265 DNFHPELKKYEGRVDATTRFLMDNPGFVSFGWYQLKPGVDGERVR------VRPASRQLT 318
Query: 207 LEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIEC---AGRKGIFP 263
L DV EID +D++ + + W ++L FDIEC + FP
Sbjct: 319 LS-DV-----------EIDCMSDNLQAIPNDDSWPD---YKLLCFDIECKSGGSNELAFP 363
Query: 264 DPNH--DPIIQIANMCIS--QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWS 319
D H D +IQI+ + S + + E+I +F+L +C D
Sbjct: 364 DATHLEDLVIQISCLLYSIPRQSLEHIL---LFSLGSC------------------DLPQ 402
Query: 320 AFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTG 379
+++ M A + V+ +E ELL + +++ P+ TG
Sbjct: 403 RYVQEMKD-----------------AGLPEPTVLEFDSEFELLIAFMTLVKQYAPEFATG 445
Query: 380 YNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNS 439
YNI NFD+ +++ ++ I S+ D + G+
Sbjct: 446 YNIVNFDWAFIME--------------KLNSIYSLKLDGY-----------------GSI 474
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
+R G + I V K F +R +K + G + D+ + +
Sbjct: 475 NR------------GGLFKIWDVGKSGF-------QRRSK-VKINGLISLDMYAIATEKL 514
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSII 526
KL SY L+SV+ L E K D+ + I
Sbjct: 515 KLSSYKLDSVAREALNESKRDLPYKDI 541
>sp|P09252|DPOL_VZVD DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Dumas) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 106/507 (20%), Positives = 192/507 (37%), Gaps = 144/507 (28%)
Query: 53 IVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRA-------FKEALNRAII--- 102
++ + G++ G V HV+G Y Y++ + + R+ E L ++I
Sbjct: 146 VITLLGMSRCGKRVAVHVYGICQYFYINKAEVDTACGIRSGSELSVLLAECLRSSMITQN 205
Query: 103 -ADMRGNKDEIQEA--------VLMVEIVQKQTVFGFWGEELENFLKIT--ESVFPTFPT 151
A + G+K+ VE++++ V+ ++ + F ++ S F +
Sbjct: 206 DATLNGDKNAFHGTSFKSASPESFRVEVIERTDVY-YYDTQPCAFYRVYSPSSKFTNYLC 264
Query: 152 HTY----KAFESNIDFDIRFMVDN-DIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQ 206
+ K +E +D RF++DN V W ++ PG R + RP +
Sbjct: 265 DNFHPELKKYEGRVDATTRFLMDNPGFVSFGWYQLKPGVDGERVR------VRPASRQLT 318
Query: 207 LEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIEC---AGRKGIFP 263
L DV EID +D++ + + W ++L FDIEC + FP
Sbjct: 319 LS-DV-----------EIDCMSDNLQAIPNDDSWPD---YKLLCFDIECKSGGSNELAFP 363
Query: 264 DPNH--DPIIQIANMCIS--QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWS 319
D H D +IQI+ + S + + E+I +F+L +C D
Sbjct: 364 DATHLEDLVIQISCLLYSIPRQSLEHIL---LFSLGSC------------------DLPQ 402
Query: 320 AFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTG 379
+++ M A + V+ +E ELL + +++ P+ TG
Sbjct: 403 RYVQEMKD-----------------AGLPEPTVLEFDSEFELLIAFMTLVKQYAPEFATG 445
Query: 380 YNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNS 439
YNI NFD+ +++ ++ I S+ D + G+
Sbjct: 446 YNIVNFDWAFIME--------------KLNSIYSLKLDGY-----------------GSI 474
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
+R G + I V K F +R +K + G + D+ + +
Sbjct: 475 NR------------GGLFKIWDVGKSGF-------QRRSK-VKINGLISLDMYAIATEKL 514
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSII 526
KL SY L+SV+ L E K D+ + I
Sbjct: 515 KLSSYKLDSVAREALNESKRDLPYKDI 541
>sp|Q9E6N9|DPOL_GAHVM DNA polymerase catalytic subunit OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV043 PE=3 SV=1
Length = 1220
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 151/380 (39%), Gaps = 100/380 (26%)
Query: 48 LKPV-PIVRMFGVTMEGNSVCCHVHGFSPYLYV-----------SAPKEFNSTHCRAFKE 95
L+P+ IV M G+T G V HV+G PY Y+ P+E +
Sbjct: 155 LRPMGTIVTMMGITECGKRVAVHVYGIKPYFYMRKVDTDTICGSRCPRELAEKLANVVRS 214
Query: 96 ALNRAIIADMRGNKDEIQEAV----LMVEIVQKQTVFGFWGEELENFLKITESV--FPTF 149
++N +A+ + + V V++VQ++ ++ ++G + F ++ F T
Sbjct: 215 SVNE--VANAKRFCTPVTRTVSADCFEVDVVQRKDIY-YYGTGHDEFYRVKSQSGKFITL 271
Query: 150 PTHTYK----AFESNIDFDIRFMVDNDIVGC-NWIEIPPG----KWQLRGQHKFSNTNRP 200
+ +E NID R ++DN+ W G K Q+R P
Sbjct: 272 LCDNFYPSIIKYEGNIDAITRMVLDNNGFSTFGWYSFKVGNNGEKVQVRA---------P 322
Query: 201 C--VSRCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAG- 257
C + C +EI+ + D+++ + PE DD W ++L FDIEC
Sbjct: 323 CHHCTSCDIEINCTVDNLIGY-PE------DD--------AWPD---YKLLCFDIECKSG 364
Query: 258 --RKGIFPDPNH--DPIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETE 313
+ FP + D +IQI+ + S ++ + +F L C
Sbjct: 365 GVNECAFPCATNEEDVVIQISCLLYSIN-TKQLEHALLFALGAC---------------- 407
Query: 314 LLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELD 373
D F T +S NI PI V+ +E ELL + FI++
Sbjct: 408 --DLPQTFKETF--QSSYNIL-----------PI----VLEFDSEFELLLAFMTFIKQYA 448
Query: 374 PDIFTGYNIQNFDFPYLINR 393
P+ TGYNI NFD+ +++ +
Sbjct: 449 PEFVTGYNIVNFDWAFIVTK 468
>sp|P30320|DPOL_PBCVN DNA polymerase OS=Paramecium bursaria Chlorella virus NY2A GN=DPO
PE=3 SV=1
Length = 913
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/479 (19%), Positives = 172/479 (35%), Gaps = 145/479 (30%)
Query: 54 VRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQ 113
+ +FG TM+G +VC F+P+ + P+ +++ F I + D I+
Sbjct: 27 INIFGKTMDGKTVCVRAK-FTPFFLLETPESWSAARTNLF--------ITETAMKYDAIR 77
Query: 114 EAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFP---------THTYKAFESNIDFD 164
+ L +++ ++G+ G ++ ++ VF T + Y+ +ES++D
Sbjct: 78 PSCLPT---KRKNMWGYDGGKMRPMVQF---VFKTLSQMRKAKYRLKNEYQIYESSVDPI 131
Query: 165 IRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEI 224
IR +I +W+ + +E +S DI E+
Sbjct: 132 IRIFHLRNINPADWMHVSKA--------------------FPVETRISNSDI------EV 165
Query: 225 DVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNH--DPIIQIANMCISQGA 282
+ S H + +V PL I S+DIE + FP + D IQIA G
Sbjct: 166 ETS----FQHLGPSDLKEVPPLIIASWDIETYSKDRKFPLAENPADYCIQIATTFQKYGE 221
Query: 283 SENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLN 342
E +V+ C +T
Sbjct: 222 PEPY----------------RRVVVCYKQT------------------------------ 235
Query: 343 TCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNF 402
A + G ++I C E ++++ W +++ D+ GYN+ +D Y+ R+
Sbjct: 236 --ASVEGVEIISCAEEADVMNTWMTILQDEITDVSIGYNLWQYDLRYIHGRS-------- 285
Query: 403 TFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSV 462
+ V DI + + +KN LGR+
Sbjct: 286 --MMCVDDITG----------------------------EDNVRLKN---LGRLLVGGGE 312
Query: 463 IKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDV 521
+ + + S G+ + ++ G + DLL + L SY+LN+VS +L +QK D+
Sbjct: 313 VIERDLSSNAFGQNKFFLLDMPGVMQIDLLQWFRKNRNLESYSLNNVSKLYLGDQKNDL 371
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,595,466
Number of Sequences: 539616
Number of extensions: 9024033
Number of successful extensions: 18379
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 17940
Number of HSP's gapped (non-prelim): 315
length of query: 551
length of database: 191,569,459
effective HSP length: 123
effective length of query: 428
effective length of database: 125,196,691
effective search space: 53584183748
effective search space used: 53584183748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)