Query psy12447
Match_columns 551
No_of_seqs 212 out of 1678
Neff 7.5
Searched_HMMs 13730
Date Fri Aug 16 19:32:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12447.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12447hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s5ja1 c.55.3.5 (A:40-449) Ex 100.0 2.8E-50 2.1E-54 426.1 12.5 368 21-550 6-383 (410)
2 d1tgoa1 c.55.3.5 (A:1-347) Exo 100.0 1.2E-47 9.1E-52 397.5 21.6 309 29-551 2-325 (347)
3 d1q8ia1 c.55.3.5 (A:2-389) Exo 100.0 4.3E-44 3.2E-48 375.4 21.2 314 50-551 16-344 (388)
4 d1ih7a1 c.55.3.5 (A:1-375) Exo 100.0 1.9E-30 1.4E-34 270.5 12.2 225 243-551 105-337 (375)
5 d1noya_ c.55.3.5 (A:) Exonucle 100.0 3.3E-30 2.4E-34 268.2 6.8 226 244-551 103-333 (372)
6 d1x9ma1 c.55.3.5 (A:1-210) Exo 98.8 2.5E-11 1.8E-15 113.3 -7.0 42 356-399 37-78 (204)
7 d3b6oa1 c.55.3.5 (A:9-234) Thr 96.7 0.0053 3.9E-07 56.3 11.7 39 361-399 96-135 (226)
8 d2guia1 c.55.3.5 (A:7-180) N-t 95.5 0.026 1.9E-06 48.6 9.2 40 356-399 71-110 (174)
9 d2qxfa1 c.55.3.5 (A:8-474) Exo 94.4 0.038 2.8E-06 56.1 8.4 42 357-399 73-114 (467)
10 d1y97a1 c.55.3.5 (A:1-228) Thr 93.8 0.15 1.1E-05 46.1 10.3 28 373-400 110-137 (228)
11 d1w0ha_ c.55.3.5 (A:) Exonucle 92.7 1.5 0.00011 37.8 15.2 45 355-399 78-126 (200)
12 d1wlja_ c.55.3.5 (A:) Interfer 85.7 0.15 1.1E-05 43.8 2.1 31 356-390 63-93 (173)
13 d2igia1 c.55.3.5 (A:1-180) Oli 81.5 1.1 8.1E-05 37.6 6.2 28 247-279 6-33 (180)
14 d1ih7a1 c.55.3.5 (A:1-375) Exo 55.0 1.8 0.00013 41.7 1.4 55 296-368 179-233 (375)
15 d1s5ja1 c.55.3.5 (A:40-449) Ex 46.1 2.4 0.00017 41.6 0.6 51 296-366 238-288 (410)
16 d1q8ia1 c.55.3.5 (A:2-389) Exo 45.0 4.3 0.00031 39.3 2.3 51 298-366 187-237 (388)
17 d1noya_ c.55.3.5 (A:) Exonucle 38.0 6 0.00044 37.6 2.1 48 302-367 181-228 (372)
18 d2f96a1 c.55.3.5 (A:19-220) Ri 35.9 14 0.001 30.8 4.0 24 249-277 14-37 (202)
19 d1tgoa1 c.55.3.5 (A:1-347) Exo 25.1 12 0.00088 35.1 1.7 46 304-367 180-225 (347)
No 1
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=2.8e-50 Score=426.08 Aligned_cols=368 Identities=19% Similarity=0.195 Sum_probs=248.0
Q ss_pred CCCceEEEEEEEEEEeCCCCCCCCCCCCCCccEEEEEeecCCCcEEEEEEeceeeEEEEeCCCCCChhHHHHHHHHHHHH
Q psy12447 21 KEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRA 100 (551)
Q Consensus 21 ~~~~~~f~~~d~d~~~~~~~~~~~~~~~~~~pvI~lfG~te~G~svcv~V~gf~PYFYv~~~~~~~~~~~~~~~~~l~~~ 100 (551)
..+...|+++|++|... .++|+|++||++.+|.+||+.++||+|||||..|.+ .+..+.
T Consensus 6 ~~~~~~~~ll~~~Y~~~-----------~~~~vi~~~g~~~~~~~v~~~~~gf~PYFyv~~~~~----~~~~~~------ 64 (410)
T d1s5ja1 6 AQENKIYFLLQVDYDGK-----------KGKAVCKLFDKETQKIYALYDNTGHKPYFLVDLEPD----KVGKIP------ 64 (410)
T ss_dssp CCTTCEEEEEEEEEETT-----------TTEEEEEEEETTTTEEEEEECCSCCCCEEEESSCHH----HHTTCH------
T ss_pred cccCCcEEEEEeEEeee-----------CCEEEEEEEeecCCcEEEEEeCCCccceEEEECCcc----hHHHHH------
Confidence 45678999999998862 378999999999999999999999999999987632 111111
Q ss_pred HHHHhccCcccccceEEEEEEEEeeeeeeecCCCcccEEEEEccc---CCCcCCCcccccccCcchhhhhhhhCCCCcce
Q psy12447 101 IIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKITESV---FPTFPTHTYKAFESNIDFDIRFMVDNDIVGCN 177 (551)
Q Consensus 101 l~~~~~~~~~~~~~~i~~ie~V~k~~lygy~~~~~~~flKI~~~~---~~~l~~~~~~vyEa~I~~~~rFliD~~I~g~~ 177 (551)
...+ ...+..++.|+|..++++ ++.+|+||+... .+.++....++|||||+|+.|||+|++|.||+
T Consensus 65 --~~~~------~~~~~~~e~v~k~~~~~~---~~~~~~ki~~~~p~~v~~~r~~~~~~~EadI~~~~RfliD~~l~~~~ 133 (410)
T d1s5ja1 65 --KIVR------DPSFDHIETVSKIDPYTW---NKFKLTKIVVRDPLAVRRLRNDVPKAYEAHIKYFNNYMYDIGLIPGM 133 (410)
T ss_dssp --HHHT------CTTEEEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHTTSSSCEESCSSCHHHHHHHHHTCCTTS
T ss_pred --HHhh------hcccceEEEEEEEeccCC---cceeEEEEEEcCHHHHHHHHHHhhhhcccccCchhcEEEEcCCccce
Confidence 1111 135678999999998775 467999999543 33444555589999999999999999999999
Q ss_pred EEEeCCCeeEecCCCCCCCCCCCccccceeEEEEEcCcccCCCCcccccCCCcccccCCCCCcccccCceeEEEEEEecc
Q psy12447 178 WIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAG 257 (551)
Q Consensus 178 Wi~i~~~~~~~~~~~~~~~~~~~r~S~c~iEi~v~~~~I~n~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ils~DIE~~~ 257 (551)
|+++.+.......... .....+.++..+...++. ... . .....+ ....++|++++|||||||.+
T Consensus 134 w~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-----~~~-~---~~~~~~-~~~~~~p~l~~lsfDIE~~~ 197 (410)
T d1s5ja1 134 PYVVKNGKLESVYLSL------DEKDVEEIKKAFADSDEM-----TRQ-M---AVDWLP-IFETEIPKIKRVAIDIEVYT 197 (410)
T ss_dssp EEEEETTEEEECCCCC------CHHHHHHHHHHTTTSCHH-----HHH-H---HHHHTH-HHHSCCCCCCEEEEEEEECC
T ss_pred EEEecCCccccccccc------Ccchhhhhccccccccch-----hhc-c---cccccc-ccccCCCCceEEEEEEEECC
Confidence 9999887654332110 011111111000000000 000 0 000000 01235799999999999987
Q ss_pred C-CCCCCCCCCC--cEEEEEEEeeccCCCcccccccccccCCcccccCceeeeecchhhHHHHHHHHHHHhCCCCccCce
Q psy12447 258 R-KGIFPDPNHD--PIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIF 334 (551)
Q Consensus 258 ~-~~~fP~~~~d--~I~~Is~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~p~ 334 (551)
. ++.||+|+.+ +|+||++.- .++.. .++.++.+
T Consensus 198 ~~~~~fP~p~~~~~~ii~I~~~~-~~~~~------~v~~~~~~------------------------------------- 233 (410)
T d1s5ja1 198 PVKGRIPDSQKAEFPIISIALAG-SDGLK------KVLVLNRN------------------------------------- 233 (410)
T ss_dssp SSSSCCCCTTTCCSCEEEEEEEE-TTSCE------EEEEECSS-------------------------------------
T ss_pred CCCCCCCCccccCceEEEEEEEc-ccCCE------EEEEEccC-------------------------------------
Confidence 6 4579999865 777777642 22221 12222110
Q ss_pred eeeeeecCCCCCccCcEEeEcCCHHHHHHHHHHHHHhcCCceEEeecccCCChHHHHHHHHHcCCCccc-cccccccccc
Q psy12447 335 VKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFT-FLGRVKDIRS 413 (551)
Q Consensus 335 ~~~~f~~~~~~~~~g~~V~~~~~E~~LL~~f~~~i~~~dPDii~GyNi~~fdl~yL~~R~~~l~i~~~~-~l~R~~~~~~ 413 (551)
.....|..+.++.|+.|++|++||.+|++++. |||||+|||+.+||||||.+||+.+|+.... .++|....
T Consensus 234 ----~~~~~~~~~~~~~v~~~~sE~eLL~~F~~~i~--dpDii~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~-- 305 (410)
T d1s5ja1 234 ----DVNEGSVKLDGISVERFNTEYELLGRFFDILL--EYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKD-- 305 (410)
T ss_dssp ----CCCCCCEEETTEEEEEESSHHHHHHHHHHHHT--TCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTT--
T ss_pred ----CCccccccCCCeEEEEECCHHHHHHHHHhhhc--ccceEEEecccCCcHHHHHHHHHHhCCccccccccccCcc--
Confidence 01122445678899999999999999999995 8999999999999999999999999985321 12221110
Q ss_pred ccchhhhhhhcccccccccccccCCCccccccccccccccccccccccccccccccccccCcccceeeeeeceeeeeHHH
Q psy12447 414 VIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLF 493 (551)
Q Consensus 414 ~~~~~f~~s~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~k~~~~~i~~~~~~s~~~g~~~~~~~~i~GR~~lDl~~ 493 (551)
..+......+.+.||+++|+|.
T Consensus 306 ----------------------------------------------------------~~~~~~~~~~~~~g~~~~d~~~ 327 (410)
T d1s5ja1 306 ----------------------------------------------------------EAKYLAGLHIDLYKFFFNKAVR 327 (410)
T ss_dssp ----------------------------------------------------------CCEETTSEEEEHHHHHTSHHHH
T ss_pred ----------------------------------------------------------ceeEecceEEEecceeeehHHH
Confidence 0011112357889999999999
Q ss_pred HHHHHccCCCCCHHHHHHHhhccCCCCCChhhHHHHHhcCCCCCcc---cccccccccCC
Q psy12447 494 VLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQIALLQPSDP---KSNAAPLRYSP 550 (551)
Q Consensus 494 ~~~~~~kl~sYsL~~V~~~~Lg~~k~~~~~~~i~~~~~~~~~~~~~---~D~~l~~rl~~ 550 (551)
.++...+|+||+|++||+++||++|.+++... .. .+....+. +||.|+++|+.
T Consensus 328 ~~~~~~~l~sy~Ld~Va~~~Lg~~K~d~~~~~-~~---~~~~~l~~Y~~~D~~L~~~L~~ 383 (410)
T d1s5ja1 328 NYAFEGKYNEYNLDAVAKALLGTSKVKVDTLI-SF---LDVEKLIEYNFRDAEITLQLTT 383 (410)
T ss_dssp HHTSTTCCSSCSHHHHHHHHHCCCCC--SSCT-TT---CCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhccCCCCCCHHHHHHHHhCcCcccCCCcc-cc---CCHHHHHHhhHHHHHHHHHHHh
Confidence 99999999999999999999999999886421 00 11111122 99999999985
No 2
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}
Probab=100.00 E-value=1.2e-47 Score=397.52 Aligned_cols=309 Identities=26% Similarity=0.378 Sum_probs=229.6
Q ss_pred EEEEEEEeCCCCCCCCCCCCCCccEEEEEeecCCCcEEEEEEeceeeEEEEeCCCCCChhHHHHHHHHHHHHHHHHhccC
Q psy12447 29 QISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGN 108 (551)
Q Consensus 29 ~~d~d~~~~~~~~~~~~~~~~~~pvI~lfG~te~G~svcv~V~gf~PYFYv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 108 (551)
++|+||... .+.|+|+|||++ +|+++|++|+||+|||||+.++.... ..+. + ....
T Consensus 2 ild~~y~~~-----------~~~~vI~lfg~~-~G~~v~~~v~~f~PyfYv~~~~~~~~---~~~~----~----~~~~- 57 (347)
T d1tgoa1 2 ILDTDYITE-----------DGKPVIRIFKKE-NGEFKIDYDRNFEPYIYALLKDDSAI---EDVK----K----ITAE- 57 (347)
T ss_dssp EEEEEEEEE-----------TTEEEEEEEEEE-TTEEEEEEESCCCCEEEEEESSGGGH---HHHT----T----CEEE-
T ss_pred eEEEEEEcc-----------CCcEEEEEEEEc-CCcEEEEEEeCccEEEEEEeCCCccH---HHHH----H----HHhh-
Confidence 799998863 378999999985 79999999999999999998765321 1110 0 0000
Q ss_pred cccccceEEEEEEEEeeeeeeecCCCcccEEEEEcccCCCc-------C--CCcccccccCcchhhhhhhhCCCCcceEE
Q psy12447 109 KDEIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTF-------P--THTYKAFESNIDFDIRFMVDNDIVGCNWI 179 (551)
Q Consensus 109 ~~~~~~~i~~ie~V~k~~lygy~~~~~~~flKI~~~~~~~l-------~--~~~~~vyEa~I~~~~rFliD~~I~g~~Wi 179 (551)
.......+..++.++++ |.+ ++.+|+||++.....+ . ...+++||+||+|.+|||+|++|.++.|
T Consensus 58 ~~~~~~~~~~~e~~~k~----~~g-~~~~~~KI~~~~p~~v~~lr~~l~~~~~~~~~yE~dI~~~~rfl~d~~l~p~~~- 131 (347)
T d1tgoa1 58 RHGTTVRVVRAEKVKKK----FLG-RPIEVWKLYFTHPQDVPAIRDKIKEHPAVVDIYEYDIPFAKRYLIDKGLIPMEG- 131 (347)
T ss_dssp ETTEEEECCEEEEEEEE----ETT-EEEEEEEEECSCTTHHHHHHHHHHHSTTEEEEESCSSCHHHHHHHHTTCCSSCS-
T ss_pred hccCcceEEEEEEeeec----cCC-ceeeEEEEEEecHHHHHHHHHHHHhCCCccceEEcCCChHHhhhhhcccccccc-
Confidence 00111234455556554 333 5789999996432221 1 2337899999999999999999865421
Q ss_pred EeCCCeeEecCCCCCCCCCCCccccceeEEEEEcCcccCCCCcccccCCCcccccCCCCCcccccCceeEEEEEEeccCC
Q psy12447 180 EIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRK 259 (551)
Q Consensus 180 ~i~~~~~~~~~~~~~~~~~~~r~S~c~iEi~v~~~~I~n~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ils~DIE~~~~~ 259 (551)
.|++++|||||||.+..
T Consensus 132 ---------------------------------------------------------------~~~~r~~s~DIE~~~~~ 148 (347)
T d1tgoa1 132 ---------------------------------------------------------------DEELKMLAFDIETLYHE 148 (347)
T ss_dssp ---------------------------------------------------------------CCCCCEEEEEEEECCCS
T ss_pred ---------------------------------------------------------------CCCceEEEEEEEeccCC
Confidence 36789999999999876
Q ss_pred CCCCCCCCCcEEEEEEEeeccCCCcccccccccccCCcccccCceeeeecchhhHHHHHHHHHHHhCCCCccCceeeeee
Q psy12447 260 GIFPDPNHDPIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVF 339 (551)
Q Consensus 260 ~~fP~~~~d~I~~Is~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~f 339 (551)
+ +.+..|+|++||+... .+. .+ +
T Consensus 149 g--~~~~~~~I~~Is~~~~-~~~---------------------~~---------------------------------~ 171 (347)
T d1tgoa1 149 G--EEFAEGPILMISYADE-EGA---------------------RV---------------------------------I 171 (347)
T ss_dssp S--SSTTCSCEEEEEEEET-TEE---------------------EE---------------------------------E
T ss_pred C--CCcccCcEEEEEEecC-CCc---------------------EE---------------------------------E
Confidence 5 3445789999997631 111 01 1
Q ss_pred ecCCCCCccCcEEeEcCCHHHHHHHHHHHHHhcCCceEEeecccCCChHHHHHHHHHcCCCcccccccccccccccchhh
Q psy12447 340 TLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSF 419 (551)
Q Consensus 340 ~~~~~~~~~g~~V~~~~~E~~LL~~f~~~i~~~dPDii~GyNi~~fdl~yL~~R~~~l~i~~~~~l~R~~~~~~~~~~~f 419 (551)
+. ....+..|..|++|++||.+|+++|+.+|||||+|||+.+||||||.+||+.+|++. .+||.....
T Consensus 172 ~~---~~~~~~~v~~~~~E~~lL~~f~~~i~~~dPDii~g~N~~~FD~pyL~~R~~~~~i~~--~~~r~~~~~------- 239 (347)
T d1tgoa1 172 TW---KNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKF--ILGREGSEP------- 239 (347)
T ss_dssp ES---SCCCCTTEEECSSHHHHHHHHHHHHHHHCCSEEEESSGGGTHHHHHHHHHHHTTCCC--CCSTTSCCC-------
T ss_pred Ee---cCccCccceeeCCHHHHHHHHHHHHhhcCccceeeccccCCchHHHHHHHHHhCCCC--ccccccCcc-------
Confidence 11 112344688999999999999999999999999999999999999999999999974 466643321
Q ss_pred hhhhcccccccccccccCCCccccccccccccccccccccccccccccccccccCcccceeeeeeceeeeeHHHHHHHHc
Q psy12447 420 IQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499 (551)
Q Consensus 420 ~~s~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~k~~~~~i~~~~~~s~~~g~~~~~~~~i~GR~~lDl~~~~~~~~ 499 (551)
...++|. ...+.++||+++|+|..+++.+
T Consensus 240 -------------------------------------------------~~~~~~~--~~~~~i~Gr~~~D~~~~~~~~~ 268 (347)
T d1tgoa1 240 -------------------------------------------------KIQRMGD--RFAVEVKGRIHFDLYPVIRRTI 268 (347)
T ss_dssp -------------------------------------------------EEEECSS--SEEEECTTSEEEEHHHHHHHHC
T ss_pred -------------------------------------------------ceeccCc--eeEEecCCeEEeeHHHHHHHhc
Confidence 0011222 2457899999999999999999
Q ss_pred cCCCCCHHHHHHHhhccCCCCCChhhHHHHHhcCCCCCcc------cccccccccCCC
Q psy12447 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQIALLQPSDP------KSNAAPLRYSPK 551 (551)
Q Consensus 500 kl~sYsL~~V~~~~Lg~~k~~~~~~~i~~~~~~~~~~~~~------~D~~l~~rl~~~ 551 (551)
+++||+|++||+++||++|+++++++|.++|.++. .+.+ +||.|+++|+.|
T Consensus 269 ~l~sy~L~~va~~~l~~~K~~~~~~~i~~~~~~~~-~~~~~~~Y~~~D~~l~~~L~~k 325 (347)
T d1tgoa1 269 NLPTYTLEAVYEAIFGQPKEKVYAEEIAQAWETGE-GLERVARYSMEDAKVTYELGKE 325 (347)
T ss_dssp CCSCCCHHHHHHHHHSSCCCCCCHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHhcCCCCCCCCHHHHHHHHHCcc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998753 3333 999999999754
No 3
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=4.3e-44 Score=375.41 Aligned_cols=314 Identities=17% Similarity=0.198 Sum_probs=213.5
Q ss_pred CccEEEEEeecCCCcEEEEEEeceeeEEEEeCCCCCChhHHHHHHHHHHHHHHHHhccCcccccceEEEEEEEEeeeeee
Q psy12447 50 PVPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFG 129 (551)
Q Consensus 50 ~~pvI~lfG~te~G~svcv~V~gf~PYFYv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~ie~V~k~~lyg 129 (551)
.+.+|++||+|++| +|||.|+|++|||||+.++. .. +... +.. ...+.++.+..+ .
T Consensus 16 ~g~~i~~~~~t~~G-~~~v~v~~q~~~f~~~~~~~------~~----~~~~----~~~------~~~~~~~~~~l~---~ 71 (388)
T d1q8ia1 16 QGTEVSFWLATDNG-PLQVTLAPQESVAFIPADQV------PR----AQHI----LQG------EQGFRLTPLALK---D 71 (388)
T ss_dssp TCBEEEEEEEETTE-EEEEECSCBCEEEEEEGGGH------HH----HHHH----TTT------CCSEEEEEEEEE---C
T ss_pred CCEEEEEEEEcCCC-CEEEEECCCcEEEEEEcchh------HH----HHHH----Hhh------CCCceecceeee---c
Confidence 67999999999999 89999999999999985431 11 1111 111 112344444444 4
Q ss_pred ecCCCcccEEEEEcccC-------CCcCCCcccccccCcchhhhhhhhCCCCcceEEEeCCCeeEecCCCCCCCCCCCcc
Q psy12447 130 FWGEELENFLKITESVF-------PTFPTHTYKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCV 202 (551)
Q Consensus 130 y~~~~~~~flKI~~~~~-------~~l~~~~~~vyEa~I~~~~rFliD~~I~g~~Wi~i~~~~~~~~~~~~~~~~~~~r~ 202 (551)
|+ .+++.+|+.... ..+...++++|||||+|+.|||+|++|.|++|+..... ..
T Consensus 72 f~---~~~V~~vy~~~~~~~r~l~~~l~~~g~~vyEaDI~~~~RfliD~~i~~~~w~~~~~~----------------~~ 132 (388)
T d1q8ia1 72 FH---RQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMH----------------NG 132 (388)
T ss_dssp TT---SCEEEEEEESCHHHHHHHHHHHHHTTCCCBSTTCCHHHHHHHHTTCSSEEEEEEEEE----------------TT
T ss_pred CC---CCEEEEEEeCCHHHHHHHHHHHhhcCCeEEEcCCChHHeEEEECCCCCCeEEEEecc----------------cc
Confidence 43 368899995332 22335679999999999999999999999999987421 11
Q ss_pred ccceeEEEEEcCcccCCCCcccccCCCcccccCCCCCcccccCceeEEEEEEeccCCCCCCCCCCCcEEEEEEEeeccCC
Q psy12447 203 SRCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGA 282 (551)
Q Consensus 203 S~c~iEi~v~~~~I~n~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ils~DIE~~~~~~~fP~~~~d~I~~Is~~~~~~~~ 282 (551)
+.++.++. . +. ...||++++||||||.+. +++.+|++. ..+.
T Consensus 133 ~~~~~~~~--~-----------------------~~--~~~P~lkilsfDIE~~~~---------~~~~si~l~--~~~~ 174 (388)
T d1q8ia1 133 TIVNARLK--P-----------------------HP--DYRPPLKWVSIDIETTRH---------GELYCIGLE--GCGQ 174 (388)
T ss_dssp EEEEEEEE--E-----------------------CT--TCCCCCCEEEEEEEECTT---------SCEEEEEEE--ETTE
T ss_pred eeecceEe--e-----------------------cC--CCCCCceEEEEEEEEcCC---------CceEEEEec--CCCC
Confidence 22233321 1 00 125899999999999764 357777754 1111
Q ss_pred CcccccccccccCCcccccCceeeeecchhhHHHHHHHHHHHhCCCCccCceeeeeeecCCCCCccCcEEeEcCCHHHHH
Q psy12447 283 SENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELL 362 (551)
Q Consensus 283 ~~~~~~~~~~~l~~~~~i~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~~~~~g~~V~~~~~E~~LL 362 (551)
. .++.+..+ ..+....+.+|..|++|++||
T Consensus 175 ~------~v~~~~~~--------------------------------------------~~~~~~~~~~v~~~~~E~~LL 204 (388)
T d1q8ia1 175 R------IVYMLGPE--------------------------------------------NGDASSLDFELEYVASRPQLL 204 (388)
T ss_dssp E------EEEEESSC--------------------------------------------CSCCTTCSSEEEEESSHHHHH
T ss_pred C------EEEEEecC--------------------------------------------CCCCCCCceEEEEeCCHHHHH
Confidence 1 11111100 011234567899999999999
Q ss_pred HHHHHHHHhcCCceEEeecccCCChHHHHHHHHHcCCCcccccccccccccccchhhhhhhcccccccccccccCCCccc
Q psy12447 363 DKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRR 442 (551)
Q Consensus 363 ~~f~~~i~~~dPDii~GyNi~~fdl~yL~~R~~~l~i~~~~~l~R~~~~~~~~~~~f~~s~~~g~~~~~~~~~~~~~~~~ 442 (551)
.+|+++++++|||||+|||+.+||||||.+||+.+|++. .+||.....
T Consensus 205 ~~F~~~i~~~dPDii~GyNi~~FDlpyL~~Ra~~~~i~~--~lgr~~~~~------------------------------ 252 (388)
T d1q8ia1 205 EKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPL--RLGRDNSEL------------------------------ 252 (388)
T ss_dssp HHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCC--CCSSSSCCC------------------------------
T ss_pred HHHHHHHHHcCCCEEEecCCCCCCHHHHHHHHHHhCCCc--hhhhcCCcc------------------------------
Confidence 999999999999999999999999999999999999975 467653321
Q ss_pred cccccccccccccccccccccccccccccccCcccceeeeeeceeeeeHHHHHHHH-ccCCCCCHHHHHHHhhccCCCCC
Q psy12447 443 ETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLRE-YKLRSYTLNSVSYHFLQEQKEDV 521 (551)
Q Consensus 443 ~~l~~~~~~~lg~~k~~~~~i~~~~~~s~~~g~~~~~~~~i~GR~~lDl~~~~~~~-~kl~sYsL~~V~~~~Lg~~k~~~ 521 (551)
.+....+ ........++||+++|+|.++++. ++++||+|++||+++||++|.+.
T Consensus 253 ------------------------~~~~~~~-~~~~~~~~i~Gr~~lD~~~~~k~~~~~~~sy~L~~Va~~~Lg~~K~~~ 307 (388)
T d1q8ia1 253 ------------------------EWREHGF-KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSID 307 (388)
T ss_dssp ------------------------EEEEECS-SSCEEEEEBTTBEEEEHHHHHHHSCCCCSCCCHHHHHHTTC-------
T ss_pred ------------------------eeEEccc-cccceeeecceEEEeehhHHHHhhhccccccCHhHhhhhhhccccccc
Confidence 0000001 112345789999999999999987 59999999999999999999743
Q ss_pred -Ch---hhHHHHHhcCCCCCcc---cccccccccCCC
Q psy12447 522 -QH---SIISDLQIALLQPSDP---KSNAAPLRYSPK 551 (551)
Q Consensus 522 -~~---~~i~~~~~~~~~~~~~---~D~~l~~rl~~~ 551 (551)
++ .++..+|.++....+. +||.|+++|+.|
T Consensus 308 ~~~~~~~~~~~~~~~d~~~l~~Y~~~D~~Lv~~L~~k 344 (388)
T d1q8ia1 308 NPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHK 344 (388)
T ss_dssp -----CTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33 4566666666544444 999999999754
No 4
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]}
Probab=99.96 E-value=1.9e-30 Score=270.48 Aligned_cols=225 Identities=22% Similarity=0.226 Sum_probs=151.4
Q ss_pred ccCceeEEEEEEeccCCCCCCCCC--CCcEEEEEEEeeccCCCcccccccccccCCcccccCceeeeecchhhHHHHHHH
Q psy12447 243 VAPLRILSFDIECAGRKGIFPDPN--HDPIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSA 320 (551)
Q Consensus 243 ~p~l~ils~DIE~~~~~~~fP~~~--~d~I~~Is~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~v~~~~~e~~~~~~~~~ 320 (551)
.|++++++|||||.+.++ ||.|. .++|.+|++.....+.. .++.+..+..-... .... . .
T Consensus 105 ~~~~~~~~~DIE~~~~~~-~p~~~~~~~~i~~I~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~-----~---~ 166 (375)
T d1ih7a1 105 HTKIRVANFDIEVTSPDG-FPEPSQAKHPIDAITHYDSIDDRF------YVFDLLNSPYGNVE---EWSI-----E---I 166 (375)
T ss_dssp GGGSCEEEEEEEECCSSS-CCCTTTCCSCEEEEEEEETTTTEE------EEEEECCCTTCCCC---CCCH-----H---H
T ss_pred cccceeeeEEEEEecCcc-ccCcccccccccceeeeeccCCeE------EEEEecCCCccccc---cccc-----c---c
Confidence 578899999999988766 88886 68999999875332221 12333222110000 0000 0 0
Q ss_pred HHHHhCCCCccCceeeeeeecCCCCCccCcEEeEcCCHHHHHHHHHHHHHhcCCceEEeecccCCChHHHHHHHHHcCCC
Q psy12447 321 FIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVK 400 (551)
Q Consensus 321 ~~~~~~~~~~~~p~~~~~f~~~~~~~~~g~~V~~~~~E~~LL~~f~~~i~~~dPDii~GyNi~~fdl~yL~~R~~~l~i~ 400 (551)
...... .......+....++.++.|++|++||.+|++++...|||||+|||+.+||||||++||+.++..
T Consensus 167 ~~~~~~----------~~~~~~~~~~~d~v~~~~~~sE~eLL~~F~~~~~~~dPDiitGwN~~~FD~pYL~~R~~~~~~~ 236 (375)
T d1ih7a1 167 AAKLQE----------QGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGE 236 (375)
T ss_dssp HHSCTT----------TTCCCCCHHHHTTEEEEEESSHHHHHHHHHHHHHHSCCSEEEETTTTTTHHHHHHHHHHHHHCH
T ss_pred cccccc----------ccccccccccCCCeEEEEcCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCcHHHHHHHHhhhch
Confidence 000000 0011112233467889999999999999999999999999999999999999999999876442
Q ss_pred -cccccccccccccccchhhhhhhcccccccccccccCCCccccccccccccccccccccccccccccccccccCcccce
Q psy12447 401 -NFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENK 479 (551)
Q Consensus 401 -~~~~l~R~~~~~~~~~~~f~~s~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~k~~~~~i~~~~~~s~~~g~~~~~ 479 (551)
....+++..... ......+.+...
T Consensus 237 ~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~~~ 261 (375)
T d1ih7a1 237 STAKRLSPHRKTR-------------------------------------------------------VKVIENMYGSRE 261 (375)
T ss_dssp HHHGGGSTTSCEE-------------------------------------------------------EEEEECSSCEEE
T ss_pred hhhhhhhhcCCcc-------------------------------------------------------EEEEEeeccccc
Confidence 111222211100 000011122234
Q ss_pred eeeeeceeeeeHHHHHHHHc--cCCCCCHHHHHHHhhccCCCCCChhhHHHHHhcCCCCCcc---cccccccccCCC
Q psy12447 480 TINFEGRVCFDLLFVLLREY--KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQIALLQPSDP---KSNAAPLRYSPK 551 (551)
Q Consensus 480 ~~~i~GR~~lDl~~~~~~~~--kl~sYsL~~V~~~~Lg~~k~~~~~~~i~~~~~~~~~~~~~---~D~~l~~rl~~~ 551 (551)
...+.||.++|++.++++.. ++.||+|++||.++||++|.+++ ..+.++|.++.+..+. +||.|+++|++|
T Consensus 262 ~~~~~g~~~~D~~~~~~~~~~~~~~s~~l~~v~~~~l~~~K~~~~-~~~~~~~~~d~~~~~~Y~~~D~~L~~~L~~k 337 (375)
T d1ih7a1 262 IITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYD-GPISKLRESNHQRYISYNIIDVYRVLQIDAK 337 (375)
T ss_dssp EEEETTCEEEEHHHHHHHHSSCCCSCCSHHHHHHHHTCCCCCCCS-SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccceeeeHHHHHHHhhhccccchhhhHHHHHHhccccccCc-ccHHHHHHhChhHhhhhhHHHHHHHHHHHHH
Confidence 67899999999999998864 78999999999999999998875 5788899987765555 999999999864
No 5
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]}
Probab=99.96 E-value=3.3e-30 Score=268.24 Aligned_cols=226 Identities=19% Similarity=0.133 Sum_probs=150.9
Q ss_pred cCceeEEEEEEeccCCCCCCCCCCCcEEEEEEEeeccCCCcccccccccccCCcccccCceeeeecchhhHHHHHHHHHH
Q psy12447 244 APLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIR 323 (551)
Q Consensus 244 p~l~ils~DIE~~~~~~~fP~~~~d~I~~Is~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~v~~~~~e~~~~~~~~~~~~ 323 (551)
..++++++||||.+....+|++..++|.+|++.....+.. .+|.+..... .+ +..... .....
T Consensus 103 ~~~~~~~~die~~~~~~~~~~~~~~~i~~I~~~~~~~~~~------~~f~~~~~~~-~~--~~~~~~--------~~~~~ 165 (372)
T d1noya_ 103 KFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRF------YVFDLLNSMY-GS--VSKWDA--------KLAAK 165 (372)
T ss_dssp GGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEE------EEEEECCCSS-CC--CCCCCH--------HHHHS
T ss_pred ccceEEeecccccccccCCcccchhhhhhhheeeccCCEE------EEEEeccccc-cc--cccccc--------ccccc
Confidence 4578999999999987777888889999999874322211 1233311110 00 000000 00000
Q ss_pred HhCCCCccCceeeeeeecCCCCCccCcEEeEcCCHHHHHHHHHHHHHhcCCceEEeecccCCChHHHHHHHHHcCCCccc
Q psy12447 324 TMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFT 403 (551)
Q Consensus 324 ~~~~~~~~~p~~~~~f~~~~~~~~~g~~V~~~~~E~~LL~~f~~~i~~~dPDii~GyNi~~fdl~yL~~R~~~l~i~~~~ 403 (551)
....+ ..........++.++.|++|++||.+|++++++.|||||+|||+.+||||||++||+.+++....
T Consensus 166 ~~~~~----------~~~~~~~~~~~v~~~~~~~E~~lL~~F~~~~~~~dPDii~G~N~~~FD~pYL~~R~~~~~~~~~~ 235 (372)
T d1noya_ 166 LDCEG----------GDEVPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSM 235 (372)
T ss_dssp CGGGT----------CCCCCHHHHTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccc----------cccccccccCCeEEEEcCCHHHHHHHHHHHHHHcCCCEEEEEccCCcchHHHHHHHHHhccccch
Confidence 00000 00000112346789999999999999999999999999999999999999999999998764322
Q ss_pred ccccccccccccchhhhhhhcccccccccccccCCCccccccccccccccccccccccccccccccccccCcccceeeee
Q psy12447 404 FLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINF 483 (551)
Q Consensus 404 ~l~R~~~~~~~~~~~f~~s~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~k~~~~~i~~~~~~s~~~g~~~~~~~~i 483 (551)
...+...... . .... .+.+......+
T Consensus 236 ~~~~~~~~~~-------------~--------------------------------------~~~~---~~~~~~~~~~~ 261 (372)
T d1noya_ 236 KRFSPIGRVK-------------S--------------------------------------KLLQ---NMYGSKEIYSI 261 (372)
T ss_dssp GGGSTTSCEE-------------E--------------------------------------EECC---GGGCSCEEEEE
T ss_pred hhhhhccccc-------------c--------------------------------------eeee---cccccceeeee
Confidence 2111100000 0 0000 11123446789
Q ss_pred eceeeeeHHHHHHHH--ccCCCCCHHHHHHHhhccCCCCCChhhHHHHHhcCCCCCcc---cccccccccCCC
Q psy12447 484 EGRVCFDLLFVLLRE--YKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQIALLQPSDP---KSNAAPLRYSPK 551 (551)
Q Consensus 484 ~GR~~lDl~~~~~~~--~kl~sYsL~~V~~~~Lg~~k~~~~~~~i~~~~~~~~~~~~~---~D~~l~~rl~~~ 551 (551)
.|+.++|++.+.+.. .++.||+|++||+++||++|.+++ .+|.+||.++.+..+. +||.|+++|++|
T Consensus 262 ~~~~~~d~~~~~~~~~~~~~~sy~L~~v~~~~l~~~K~~~~-~~l~~~~~~d~~~l~~Yni~D~~L~~~L~~k 333 (372)
T d1noya_ 262 DGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYD-GPINKLRETNHQRYISYNIIDVESVQAIDKI 333 (372)
T ss_dssp TTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCS-SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEeehhheecccccchhhhhhhheeeccccCCCCcc-hhHHHHHHhChhHhheecHHHHHHHHHHHHH
Confidence 999999999999874 589999999999999999999885 5799999987765555 999999999864
No 6
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}
Probab=98.80 E-value=2.5e-11 Score=113.33 Aligned_cols=42 Identities=21% Similarity=0.102 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEeecccCCChHHHHHHHHHcCC
Q psy12447 356 KTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGV 399 (551)
Q Consensus 356 ~~E~~LL~~f~~~i~~~dPDii~GyNi~~fdl~yL~~R~~~l~i 399 (551)
.+|.++|.+|.+++. +||+|+|||+.+||+|||.+|+...+.
T Consensus 37 ~~~~~~l~~~~~~l~--~~D~ivghN~~~FD~P~L~~~~~~~~~ 78 (204)
T d1x9ma1 37 SDFGAYLDALEAEVA--RGGLIVFHNGHKYDVPALTKLAKLQLN 78 (204)
T ss_dssp GGHHHHHHHHHHHHH--TTCCEEESSTTTTHHHHHHHHHHHHHC
T ss_pred CCchhHHHHHHHHHh--cCCEEEEEccccccHHHHHHHHHHhcc
Confidence 468889999999884 899999999999999999999977544
No 7
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.71 E-value=0.0053 Score=56.33 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhc-CCceEEeecccCCChHHHHHHHHHcCC
Q psy12447 361 LLDKWSAFIREL-DPDIFTGYNIQNFDFPYLINRAKHLGV 399 (551)
Q Consensus 361 LL~~f~~~i~~~-dPDii~GyNi~~fdl~yL~~R~~~l~i 399 (551)
+...+..++... .+.+++|||+..||+++|..=+.++|+
T Consensus 96 ~~~~~~~f~~~~~~~~~lVahN~~~FD~~~l~~~~~r~~~ 135 (226)
T d3b6oa1 96 LAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLST 135 (226)
T ss_dssp HHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhccCCceEEEechhHHHHHHHHHHHHHcCC
Confidence 334444444444 467799999999999999655555544
No 8
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=95.48 E-value=0.026 Score=48.62 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEeecccCCChHHHHHHHHHcCC
Q psy12447 356 KTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGV 399 (551)
Q Consensus 356 ~~E~~LL~~f~~~i~~~dPDii~GyNi~~fdl~yL~~R~~~l~i 399 (551)
.+..+.+..|.+++.. ..++|||. .||+.++..-++.++.
T Consensus 71 ~~~~~~~~~~~~~~~~---~~~v~~~~-~~d~~~~~~~~~~~~~ 110 (174)
T d2guia1 71 PTFAEVADEFMDYIRG---AELVIHNA-AFDIGFMDYEFSLLKR 110 (174)
T ss_dssp CCHHHHHHHHHHHHTT---SEEEETTH-HHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHhcCC---CeEEEeec-chhhHHHHHHHHHhCC
Confidence 4556677777777764 35788886 5688888777666654
No 9
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}
Probab=94.45 E-value=0.038 Score=56.10 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHhcCCceEEeecccCCChHHHHHHHHHcCC
Q psy12447 357 TETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGV 399 (551)
Q Consensus 357 ~E~~LL~~f~~~i~~~dPDii~GyNi~~fdl~yL~~R~~~l~i 399 (551)
+|++++..+..++.. .|.+++|||...||..+|..=+.+.++
T Consensus 73 ~~~e~~~~i~~~~~~-~~~~~v~~n~~~FD~~fl~~~~~r~~~ 114 (467)
T d2qxfa1 73 NEAAFAARIHSLFTV-PKTCILGYNNVRFDDEVTRNIFYRNFY 114 (467)
T ss_dssp CHHHHHHHHHHHHTS-TTEEEEESSTTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhc-CCCcEEEEecchhhHHHHHHHHHHhcc
Confidence 788899999888864 578899999999999999655555444
No 10
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.77 E-value=0.15 Score=46.07 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=23.4
Q ss_pred CCceEEeecccCCChHHHHHHHHHcCCC
Q psy12447 373 DPDIFTGYNIQNFDFPYLINRAKHLGVK 400 (551)
Q Consensus 373 dPDii~GyNi~~fdl~yL~~R~~~l~i~ 400 (551)
.+.+++|||...||+.+|..-+.++|+.
T Consensus 110 ~~~~~v~~n~~~fD~~~l~~~l~r~~~~ 137 (228)
T d1y97a1 110 GPICLVAHNGFDYDFPLLCAELRRLGAR 137 (228)
T ss_dssp SSEEEEETTTTTTHHHHHHHHHHHHTCC
T ss_pred CCceEEeechHHHhHHHHHHHHHHcCCC
Confidence 5668899999999999998777777663
No 11
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.68 E-value=1.5 Score=37.84 Aligned_cols=45 Identities=9% Similarity=-0.099 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHHHhcC----CceEEeecccCCChHHHHHHHHHcCC
Q psy12447 355 CKTETELLDKWSAFIRELD----PDIFTGYNIQNFDFPYLINRAKHLGV 399 (551)
Q Consensus 355 ~~~E~~LL~~f~~~i~~~d----PDii~GyNi~~fdl~yL~~R~~~l~i 399 (551)
-....+++.+|.+++.... .-++.++|+..+|..+|..-++..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~~~~~~~~ 126 (200)
T d1w0ha_ 78 ADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 126 (200)
T ss_dssp SBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTC
T ss_pred hhhhHhHHHHHHHHhcCCcEEeeeeeeeccchhhhHHHHHHHHHHhccC
Confidence 3577788999999888753 24566777877777777655555554
No 12
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.72 E-value=0.15 Score=43.76 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEeecccCCChHHH
Q psy12447 356 KTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYL 390 (551)
Q Consensus 356 ~~E~~LL~~f~~~i~~~dPDii~GyNi~~fdl~yL 390 (551)
.+..+.+..|.+++ +..+++|||+ .||+.+|
T Consensus 63 ~~~~~~~~~~~~~~---~~~~lv~hn~-~fD~~~L 93 (173)
T d1wlja_ 63 TPFAVARLEILQLL---KGKLVVGHDL-KHDFQAL 93 (173)
T ss_dssp EEHHHHHHHHHHHH---TTSEEEESSH-HHHHHHT
T ss_pred CcHHHHHHHHHhhc---ccceEEeech-HhHHHHH
Confidence 34556777777664 4569999995 7999887
No 13
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]}
Probab=81.49 E-value=1.1 Score=37.61 Aligned_cols=28 Identities=36% Similarity=0.663 Sum_probs=22.7
Q ss_pred eeEEEEEEeccCCCCCCCCCCCcEEEEEEEeec
Q psy12447 247 RILSFDIECAGRKGIFPDPNHDPIIQIANMCIS 279 (551)
Q Consensus 247 ~ils~DIE~~~~~~~fP~~~~d~I~~Is~~~~~ 279 (551)
.++.+|+||..- +|..|+|++|+++...
T Consensus 6 ~lv~lD~ETTGL-----dp~~d~IIeIaaV~~d 33 (180)
T d2igia1 6 NLIWIDLEMTGL-----DPERDRIIEIATLVTD 33 (180)
T ss_dssp CEEEEEEEESSS-----CTTTCCEEEEEEEEEC
T ss_pred CEEEEEEECCCC-----CCCCCeEEEEEEEEEE
Confidence 678899999872 6688999999987543
No 14
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]}
Probab=54.98 E-value=1.8 Score=41.68 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=44.5
Q ss_pred CcccccCceeeeecchhhHHHHHHHHHHHhCCCCccCceeeeeeecCCCCCccCcEEeEcCCHHHHHHHHHHH
Q psy12447 296 TCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAF 368 (551)
Q Consensus 296 ~~~~i~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~~~~~g~~V~~~~~E~~LL~~f~~~ 368 (551)
.+....+..++.|++|.+||.+|..+++..+ | +.++|+|+..|+-.+ |+.|...+
T Consensus 179 ~~~~~d~v~~~~~~sE~eLL~~F~~~~~~~d------P-----------DiitGwN~~~FD~pY-L~~R~~~~ 233 (375)
T d1ih7a1 179 PSEIIDKIIYMPFDNEKELLMEYLNFWQQKT------P-----------VILTGWNVESFDIPY-VYNRIKNI 233 (375)
T ss_dssp CHHHHTTEEEEEESSHHHHHHHHHHHHHHSC------C-----------SEEEETTTTTTHHHH-HHHHHHHH
T ss_pred ccccCCCeEEEEcCCHHHHHHHHHHHHHhcC------C-----------CEEEEcCCCCCCcHH-HHHHHHhh
Confidence 3444556778999999999999999988754 3 457899999999999 99987643
No 15
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Probab=46.12 E-value=2.4 Score=41.58 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=42.4
Q ss_pred CcccccCceeeeecchhhHHHHHHHHHHHhCCCCccCceeeeeeecCCCCCccCcEEeEcCCHHHHHHHHH
Q psy12447 296 TCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWS 366 (551)
Q Consensus 296 ~~~~i~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~~~~~g~~V~~~~~E~~LL~~f~ 366 (551)
.|.++.+..|+.+++|.+||.+|..++..+ +.+.|+|+..|+-.+ |+.|..
T Consensus 238 ~~~~~~~~~v~~~~sE~eLL~~F~~~i~dp-------------------Dii~GyN~~~FD~py-L~~Ra~ 288 (410)
T d1s5ja1 238 GSVKLDGISVERFNTEYELLGRFFDILLEY-------------------PIVLTFNGDDFDLPY-IYFRAL 288 (410)
T ss_dssp CCEEETTEEEEEESSHHHHHHHHHHHHTTC-------------------SEEEESSTTTTHHHH-HHHHHH
T ss_pred ccccCCCeEEEEECCHHHHHHHHHhhhccc-------------------ceEEEecccCCcHHH-HHHHHH
Confidence 566778889999999999999999887532 346789999999988 888875
No 16
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}
Probab=45.00 E-value=4.3 Score=39.31 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=41.7
Q ss_pred ccccCceeeeecchhhHHHHHHHHHHHhCCCCccCceeeeeeecCCCCCccCcEEeEcCCHHHHHHHHH
Q psy12447 298 APIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWS 366 (551)
Q Consensus 298 ~~i~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~~~~~g~~V~~~~~E~~LL~~f~ 366 (551)
.+..+..+..+++|.+||.+|..++...+ | +.+.|+|+..|+-.+ |+.+..
T Consensus 187 ~~~~~~~v~~~~~E~~LL~~F~~~i~~~d------P-----------Dii~GyNi~~FDlpy-L~~Ra~ 237 (388)
T d1q8ia1 187 ASSLDFELEYVASRPQLLEKLNAWFANYD------P-----------DVIIGWNVVQFDLRM-LQKHAE 237 (388)
T ss_dssp CTTCSSEEEEESSHHHHHHHHHHHHHHHC------C-----------SEEEESSTTTTHHHH-HHHHHH
T ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHcC------C-----------CEEEecCCCCCCHHH-HHHHHH
Confidence 34455678899999999999999998776 4 457899999999888 888874
No 17
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]}
Probab=38.03 E-value=6 Score=37.64 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=40.5
Q ss_pred CceeeeecchhhHHHHHHHHHHHhCCCCccCceeeeeeecCCCCCccCcEEeEcCCHHHHHHHHHH
Q psy12447 302 GSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSA 367 (551)
Q Consensus 302 ~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~~~~~g~~V~~~~~E~~LL~~f~~ 367 (551)
++.++.|++|.+||.+|..+++..+ | +.++|+|+..|+-.+ |+.|...
T Consensus 181 ~v~~~~~~~E~~lL~~F~~~~~~~d------P-----------Dii~G~N~~~FD~pY-L~~R~~~ 228 (372)
T d1noya_ 181 RVIYMPFDNERDMLMEYINLWEQKR------P-----------AIFTGWNIEGFDVPY-IMNRVKM 228 (372)
T ss_dssp TEEEEEESCHHHHHHHHHHHHHHSC------C-----------SEEECSSTTTTHHHH-HHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHHcC------C-----------CEEEEEccCCcchHH-HHHHHHH
Confidence 4568899999999999999998765 4 457899999999999 8888754
No 18
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.90 E-value=14 Score=30.77 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEe
Q psy12447 249 LSFDIECAGRKGIFPDPNHDPIIQIANMC 277 (551)
Q Consensus 249 ls~DIE~~~~~~~fP~~~~d~I~~Is~~~ 277 (551)
+.||+||..- +|..|+|++||.+.
T Consensus 14 Vv~D~ETTGl-----~~~~~~IIeigav~ 37 (202)
T d2f96a1 14 VVVDVETGGF-----NSATDALLEIAATT 37 (202)
T ss_dssp EEEEEEESSS-----CTTTBCEEEEEEEE
T ss_pred EEEEEeCCCC-----CCCCCceEEEEEEE
Confidence 6789999872 56778999999874
No 19
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}
Probab=25.12 E-value=12 Score=35.11 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=37.7
Q ss_pred eeeeecchhhHHHHHHHHHHHhCCCCccCceeeeeeecCCCCCccCcEEeEcCCHHHHHHHHHH
Q psy12447 304 QVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSA 367 (551)
Q Consensus 304 ~v~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~~~~~g~~V~~~~~E~~LL~~f~~ 367 (551)
.+..+++|.+||.+|..++...+ | +.+.|+|+..|+-.+ |+.|...
T Consensus 180 ~v~~~~~E~~lL~~f~~~i~~~d------P-----------Dii~g~N~~~FD~py-L~~R~~~ 225 (347)
T d1tgoa1 180 YVDVVSTEKEMIKRFLKVVKEKD------P-----------DVLITYNGDNFDFAY-LKKRSEK 225 (347)
T ss_dssp TEEECSSHHHHHHHHHHHHHHHC------C-----------SEEEESSGGGTHHHH-HHHHHHH
T ss_pred cceeeCCHHHHHHHHHHHHhhcC------c-----------cceeeccccCCchHH-HHHHHHH
Confidence 36678999999999999998765 4 446789999999888 8888753
Done!