Your job contains 1 sequence.
>psy12447
PECQQTSDKWSRAPPPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVT
MEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVE
IVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFESNIDFDIRFMVDNDIVGCNWIE
IPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEW
SKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNVFTLNTCAPI
VGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETE
LLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFI
QSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKT
INFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQIALLQPSDPK
SNAAPLRYSPK
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12447
(551 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0263600 - symbol:DNApol-delta "DNA-polymerase-delt... 976 1.4e-133 2
ZFIN|ZDB-GENE-060429-1 - symbol:pold1 "polymerase (DNA di... 800 7.0e-113 2
UNIPROTKB|E2R5W5 - symbol:POLD1 "DNA polymerase" species:... 712 2.8e-99 2
UNIPROTKB|J9NS34 - symbol:POLD1 "DNA polymerase" species:... 712 3.8e-99 2
UNIPROTKB|F1RH32 - symbol:POLD1 "DNA polymerase" species:... 687 4.9e-96 2
UNIPROTKB|P28340 - symbol:POLD1 "DNA polymerase delta cat... 694 7.1e-96 2
UNIPROTKB|P28339 - symbol:POLD1 "DNA polymerase delta cat... 688 2.3e-94 2
RGD|621839 - symbol:Pold1 "polymerase (DNA directed), del... 674 5.7e-94 2
UNIPROTKB|O54747 - symbol:Pold1 "DNA polymerase delta cat... 674 5.7e-94 2
MGI|MGI:97741 - symbol:Pold1 "polymerase (DNA directed), ... 655 2.6e-91 2
UNIPROTKB|E1BNZ6 - symbol:E1BNZ6 "DNA polymerase" species... 564 9.3e-81 2
DICTYBASE|DDB_G0285381 - symbol:polD1 "DNA polymerase del... 542 3.4e-76 2
UNIPROTKB|Q9LRE6 - symbol:POLD1 "DNA polymerase delta cat... 541 1.0e-74 2
ASPGD|ASPL0000065466 - symbol:AN7325 species:162425 "Emer... 503 2.9e-73 2
UNIPROTKB|Q5AWK5 - symbol:AN7325.2 "DNA polymerase" speci... 503 2.9e-73 2
SGD|S000002260 - symbol:POL3 "Catalytic subunit of DNA po... 464 1.8e-71 2
UNIPROTKB|Q755K6 - symbol:AGOS_AFL189W "DNA polymerase" s... 432 1.7e-67 2
UNIPROTKB|A8HPJ0 - symbol:POLD1 "DNA polymerase" species:... 445 2.0e-61 2
POMBASE|SPBC336.04 - symbol:cdc6 "DNA polymerase delta ca... 398 1.6e-54 2
WB|WBGene00008645 - symbol:F10C2.4 species:6239 "Caenorha... 320 1.3e-53 3
UNIPROTKB|P90829 - symbol:F10C2.4 "DNA polymerase delta c... 320 1.3e-53 3
UNIPROTKB|Q8X0N7 - symbol:B10H4.020 "DNA polymerase" spec... 383 1.3e-52 2
UNIPROTKB|Q7RSZ8 - symbol:PY00203 "DNA polymerase" specie... 309 2.1e-44 2
GENEDB_PFALCIPARUM|PF10_0165 - symbol:PF10_0165 "DNA poly... 287 9.9e-43 2
UNIPROTKB|Q7KQL4 - symbol:PF10_0165 "DNA polymerase" spec... 287 9.9e-43 2
UNIPROTKB|Q22HL1 - symbol:TTHERM_00636920 "DNA polymerase... 282 5.1e-40 2
FB|FBgn0002891 - symbol:mus205 "mutagen-sensitive 205" sp... 179 2.0e-14 4
MGI|MGI:1337131 - symbol:Rev3l "REV3-like, catalytic subu... 158 1.1e-12 4
UNIPROTKB|E1BPY8 - symbol:REV3L "DNA polymerase" species:... 157 1.2e-12 4
UNIPROTKB|Q8TSB3 - symbol:MA_0885 "DNA polymerase" specie... 133 4.6e-12 2
UNIPROTKB|F1LMP6 - symbol:Rev3l "DNA polymerase" species:... 155 5.8e-12 4
UNIPROTKB|F1M8G6 - symbol:Rev3l "DNA polymerase" species:... 155 5.9e-12 4
UNIPROTKB|O60673 - symbol:REV3L "DNA polymerase zeta cata... 152 6.1e-12 4
UNIPROTKB|F1P7D5 - symbol:REV3L "DNA polymerase" species:... 150 8.1e-12 4
ZFIN|ZDB-GENE-050302-55 - symbol:rev3l "REV3-like, cataly... 135 1.0e-10 4
UNIPROTKB|Q233J3 - symbol:TTHERM_00391570 "DNA polymerase... 116 1.5e-09 4
POMBASE|SPAC688.10 - symbol:rev3 "DNA polymerase zeta cat... 127 2.0e-09 3
ASPGD|ASPL0000070569 - symbol:uvsI species:162425 "Emeric... 124 1.1e-08 4
UNIPROTKB|G4NL37 - symbol:MGG_02986 "DNA polymerase" spec... 111 1.7e-08 5
UNIPROTKB|Q8X1U8 - symbol:UPR1 "DNA polymerase" species:5... 129 2.8e-08 4
SGD|S000006088 - symbol:REV3 "Catalytic subunit of DNA po... 108 4.4e-08 4
DICTYBASE|DDB_G0271608 - symbol:rev3 "DNA polymerase zeta... 104 1.8e-06 4
UNIPROTKB|A8IZI7 - symbol:CHLREDRAFT_117850 "Predicted pr... 116 4.4e-06 1
UNIPROTKB|F1NQT0 - symbol:REV3L "DNA polymerase" species:... 91 0.00016 4
UNIPROTKB|Q75F27 - symbol:AGOS_AAL099C "DNA polymerase" s... 99 0.00021 4
TAIR|locus:2028496 - symbol:AT1G49180 species:3702 "Arabi... 119 0.00052 1
>FB|FBgn0263600 [details] [associations]
symbol:DNApol-delta "DNA-polymerase-delta" species:7227
"Drosophila melanogaster" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;NAS;IDA] [GO:0043625 "delta DNA polymerase
complex" evidence=ISS;IDA] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=IDA] [GO:0006273 "lagging strand elongation"
evidence=NAS] [GO:0006272 "leading strand elongation" evidence=NAS]
[GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=NAS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005875 EMBL:AE014296
GO:GO:0022008 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006974 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0008296 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0043625 EMBL:X88928
EMBL:AY113526 RefSeq:NP_524099.2 UniGene:Dm.2838
ProteinModelPortal:P54358 SMR:P54358 DIP:DIP-22360N IntAct:P54358
MINT:MINT-877114 STRING:P54358 PaxDb:P54358
EnsemblMetazoa:FBtr0075522 GeneID:39746 KEGG:dme:Dmel_CG5949
CTD:39746 FlyBase:FBgn0263600 InParanoid:P54358 OMA:RSFRPYF
OrthoDB:EOG4RFJ7F PhylomeDB:P54358 GenomeRNAi:39746 NextBio:815171
Bgee:P54358 GermOnline:CG5949 Uniprot:P54358
Length = 1092
Score = 976 (348.6 bits), Expect = 1.4e-133, Sum P(2) = 1.4e-133
Identities = 185/340 (54%), Positives = 239/340 (70%)
Query: 1 PECQQTSDKWSRAPPPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVT 60
PE Q TS++WSR PPPEL+P + + FQQ+ +E+Y G+P+PGMPG+Q+ PVP+VRMFGVT
Sbjct: 52 PENQTTSERWSRPPPPELDPSKHNLEFQQLDVENYLGQPLPGMPGAQIGPVPVVRMFGVT 111
Query: 61 MEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVE 120
MEGNSVCCHVHGF PY Y+ AP +F HC ++AL++ +IAD+R NKD +QEAVLMVE
Sbjct: 112 MEGNSVCCHVHGFCPYFYIEAPSQFEEHHCEKLQKALDQKVIADIRNNKDNVQEAVLMVE 171
Query: 121 IVQKQTVFGFWGEELENFLKIT----------------ESVFPTFPTHTYKAFESNIDFD 164
+V+K + G+ G++ + ++KI+ E + +AFE+NIDFD
Sbjct: 172 LVEKLNIHGYNGDKKQRYIKISVTLPRFVAAASRLLKKEVIMSEIDFQDCRAFENNIDFD 231
Query: 165 IRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCV-SRCQLEIDVSTDDIVSHAPEE 223
IRFMVD D+VGCNWIE+P G W++R H ++P SRCQ+E+DV+ D +SH PE
Sbjct: 232 IRFMVDTDVVGCNWIELPMGHWRIRNSH-----SKPLPESRCQIEVDVAFDRFISHEPE- 285
Query: 224 IDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGAS 283
GEWSKVAP RILSFDIECAGRKGIFP+ DP+IQIANM I QG
Sbjct: 286 --------------GEWSKVAPFRILSFDIECAGRKGIFPEAKIDPVIQIANMVIRQGER 331
Query: 284 ENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIR 323
E F++NVFTLN CAPI+GSQV+C ET++LDKWSAF+R
Sbjct: 332 EP-FIRNVFTLNECAPIIGSQVLCHDKETQMLDKWSAFVR 370
Score = 430 (156.4 bits), Expect = 3.1e-39, P = 3.1e-39
Identities = 77/111 (69%), Positives = 95/111 (85%)
Query: 327 QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFD 386
QG E F++NVFTLN CAPI+GSQV+C ET++LDKWSAF+RE+DPDI TGYNI NFD
Sbjct: 328 QGEREP-FIRNVFTLNECAPIIGSQVLCHDKETQMLDKWSAFVREVDPDILTGYNINNFD 386
Query: 387 FPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
FPYL+NRA HL V+NF +LGR+K+IRSVIK+ +QSKQMG+REN+ +NFEG
Sbjct: 387 FPYLLNRAAHLKVRNFEYLGRIKNIRSVIKEQMLQSKQMGRRENQYVNFEG 437
Score = 354 (129.7 bits), Expect = 1.4e-133, Sum P(2) = 1.4e-133
Identities = 68/91 (74%), Positives = 81/91 (89%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
+R L V+NF +LGR+K+IRSVIK+ +QSKQMG+REN+ +NFEGRV FDLLFVLLR+Y
Sbjct: 392 NRAAHLKVRNFEYLGRIKNIRSVIKEQMLQSKQMGRRENQYVNFEGRVPFDLLFVLLRDY 451
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
KLRSYTLN+VSYHFLQEQKEDV HSII+DLQ
Sbjct: 452 KLRSYTLNAVSYHFLQEQKEDVHHSIITDLQ 482
>ZFIN|ZDB-GENE-060429-1 [details] [associations]
symbol:pold1 "polymerase (DNA directed), delta 1,
catalytic subunit" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IBA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA]
[GO:0045004 "DNA replication proofreading" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IBA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 ZFIN:ZDB-GENE-060429-1
GO:GO:0007346 GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
EMBL:AY883095 IPI:IPI00631610 RefSeq:NP_001034899.1
UniGene:Dr.49022 ProteinModelPortal:Q2KNE0 STRING:Q2KNE0
GeneID:556456 KEGG:dre:556456 InParanoid:Q2KNE0 NextBio:20881495
ArrayExpress:Q2KNE0 Uniprot:Q2KNE0
Length = 1105
Score = 800 (286.7 bits), Expect = 7.0e-113, Sum P(2) = 7.0e-113
Identities = 158/358 (44%), Positives = 221/358 (61%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSVCC 68
+W R L+PK D ++FQQI +++Y G + GMPG VPIVRMFGVT GNSVCC
Sbjct: 73 RWKRPHASPLHPKSDTLIFQQIDLDYYLGAAVAGMPGQVQGKVPIVRMFGVTDNGNSVCC 132
Query: 69 HVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVF 128
H+HGF+PY YV AP F + H F+ LN ++ DMR NKD I VL V+I +K++++
Sbjct: 133 HIHGFAPYFYVPAPNGFTNAHLAGFQRELNSVVLKDMRSNKDNIAVTVLAVDITKKESMY 192
Query: 129 GFWGEELENFLKITESV----------------FPTFPTHTYKAFESNIDFDIRFMVDND 172
+ G + +FL+IT ++ F F T +Y+AFE+NIDF+IRFMVD++
Sbjct: 193 NYHGNKPHDFLRITMAMPRLVAPAKRLLEQGFKFANFATQSYQAFEANIDFEIRFMVDSN 252
Query: 173 IVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIV 232
+VGC WIE+P GK+QLR + + T+ + VS E+DV+ D ++
Sbjct: 253 VVGCCWIELPKGKYQLREERREGQTDSKYPGK------------VSLCQYEVDVAWDSLI 300
Query: 233 SHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNVF 292
SH EGEW ++APLR+LSFDIECAGRKG+FP+P DP+IQIA+M QG E F++ VF
Sbjct: 301 SHPAEGEWQRIAPLRVLSFDIECAGRKGVFPEPEVDPVIQIASMVQRQGEKEP-FIRTVF 359
Query: 293 TLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGASENIFVKNV---FTLNTCAPI 347
TL +CA IVGSQ++C E +L W+ F+RT+ ++N + LN A +
Sbjct: 360 TLQSCASIVGSQILCFTQEKLMLQSWAEFMRTVDPDIITGYNIQNFDLPYLLNRAATL 417
Score = 346 (126.9 bits), Expect = 2.5e-28, P = 2.5e-28
Identities = 67/111 (60%), Positives = 81/111 (72%)
Query: 327 QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFD 386
QG E F++ VFTL +CA IVGSQ++C E +L W+ F+R +DPDI TGYNIQNFD
Sbjct: 348 QGEKEP-FIRTVFTLQSCASIVGSQILCFTQEKLMLQSWAEFMRTVDPDIITGYNIQNFD 406
Query: 387 FPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
PYL+NRA L V F +LGRV +SV+KDS QSKQMG+RENKTIN EG
Sbjct: 407 LPYLLNRAATLKVNMFPYLGRVWGCKSVLKDSSFQSKQMGRRENKTINMEG 457
Score = 334 (122.6 bits), Expect = 7.0e-113, Sum P(2) = 7.0e-113
Identities = 68/91 (74%), Positives = 77/91 (84%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
+R TL V F +LGRV +SV+KDS QSKQMG+RENKTIN EGRV FDLL VLLR+Y
Sbjct: 412 NRAATLKVNMFPYLGRVWGCKSVLKDSSFQSKQMGRRENKTINMEGRVQFDLLQVLLRDY 471
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
KLRSYTLN+VS+HFLQEQKEDVQHSII+DLQ
Sbjct: 472 KLRSYTLNAVSFHFLQEQKEDVQHSIITDLQ 502
>UNIPROTKB|E2R5W5 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0045004 "DNA replication proofreading"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0003682 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0000731 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 CTD:5424 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0000109
EMBL:AAEX03000791 RefSeq:XP_851285.1 Ensembl:ENSCAFT00000004726
GeneID:610047 KEGG:cfa:610047 Uniprot:E2R5W5
Length = 1107
Score = 712 (255.7 bits), Expect = 2.8e-99, Sum P(2) = 2.8e-99
Identities = 152/335 (45%), Positives = 202/335 (60%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTG--EPIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R PP L+P+++ ++FQQ+ I+HY G +P+PG P VPI+R FGVT EG SV
Sbjct: 78 RWLRPTPPPLDPQKEPLIFQQLEIDHYVGPAQPLPGAPTPSRDSVPILRAFGVTDEGVSV 137
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F S H + LN AI D RG K+ AVL VE+ +++
Sbjct: 138 CCHIHGFAPYFYTPAPSGFGSEHLGDLQRELNAAISRDQRGGKELTGPAVLSVELCSRES 197
Query: 127 VFGFWGEELENFLKITES----VFPT------------FPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT + V P T ++ +E+N+DF+IRFMVD
Sbjct: 198 MFGYHGHGPSPFLRITLALPRLVAPARRLLEQGIRVAGLGTPSFAPYEANVDFEIRFMVD 257
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P K+ LR Q K + CQLE DV D+VSH P
Sbjct: 258 TDIVGCNWLELPAEKYILRPQGK--------ATLCQLEADVLWSDVVSH-P--------- 299
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG+W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E F++
Sbjct: 300 -----PEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP-FLRL 353
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTM 325
TL CAPI+G++V + E ELL WS FIRTM
Sbjct: 354 ALTLRPCAPILGAKVQSYEREEELLQAWSTFIRTM 388
Score = 305 (112.4 bits), Expect = 2.8e-99, Sum P(2) = 2.8e-99
Identities = 70/147 (47%), Positives = 91/147 (61%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++ TL CAPI+G++V + E ELL WS FIR +DPD+ TGYNIQNFD PYLI+R
Sbjct: 350 FLRLALTLRPCAPILGAKVQSYEREEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISR 409
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDR-------RE--- 443
A+ L V F FLGRV +RS I+DS QSKQ G+R++K ++ G RE
Sbjct: 410 AQTLKVHTFPFLGRVSGLRSNIRDSSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYKL 469
Query: 444 ---TLGVKNFTFLGRVK-DIR-SVIKD 465
TL +F FLG K D++ S+I D
Sbjct: 470 RSYTLNAVSFHFLGEQKEDVQHSIITD 496
Score = 297 (109.6 bits), Expect = 1.9e-98, Sum P(2) = 1.9e-98
Identities = 60/90 (66%), Positives = 72/90 (80%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
R +TL V F FLGRV +RS I+DS QSKQ G+R++K ++ GRV D+L VLLREYK
Sbjct: 409 RAQTLKVHTFPFLGRVSGLRSNIRDSSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYK 468
Query: 501 LRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 469 LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 498
Score = 37 (18.1 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 10 WSRAPPPELNPKEDKI-VFQQISIEHYTGE--------PIPGMPGSQLKPVPI 53
W P + + E+++ + +++ EH E P+ G P Q P I
Sbjct: 23 WDEDEPFQPSQFEEELALMEEMEAEHRLQEQEEELLQPPLEGAPDGQFSPTAI 75
>UNIPROTKB|J9NS34 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 GeneTree:ENSGT00560000077365
OMA:MIEQTKQ EMBL:AAEX03000791 Ensembl:ENSCAFT00000045094
Uniprot:J9NS34
Length = 1131
Score = 712 (255.7 bits), Expect = 3.8e-99, Sum P(2) = 3.8e-99
Identities = 152/335 (45%), Positives = 202/335 (60%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTG--EPIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R PP L+P+++ ++FQQ+ I+HY G +P+PG P VPI+R FGVT EG SV
Sbjct: 78 RWLRPTPPPLDPQKEPLIFQQLEIDHYVGPAQPLPGAPTPSRDSVPILRAFGVTDEGVSV 137
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F S H + LN AI D RG K+ AVL VE+ +++
Sbjct: 138 CCHIHGFAPYFYTPAPSGFGSEHLGDLQRELNAAISRDQRGGKELTGPAVLSVELCSRES 197
Query: 127 VFGFWGEELENFLKITES----VFPT------------FPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT + V P T ++ +E+N+DF+IRFMVD
Sbjct: 198 MFGYHGHGPSPFLRITLALPRLVAPARRLLEQGIRVAGLGTPSFAPYEANVDFEIRFMVD 257
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P K+ LR Q K + CQLE DV D+VSH P
Sbjct: 258 TDIVGCNWLELPAEKYILRPQGK--------ATLCQLEADVLWSDVVSH-P--------- 299
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG+W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E F++
Sbjct: 300 -----PEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP-FLRL 353
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTM 325
TL CAPI+G++V + E ELL WS FIRTM
Sbjct: 354 ALTLRPCAPILGAKVQSYEREEELLQAWSTFIRTM 388
Score = 305 (112.4 bits), Expect = 3.8e-99, Sum P(2) = 3.8e-99
Identities = 70/147 (47%), Positives = 91/147 (61%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++ TL CAPI+G++V + E ELL WS FIR +DPD+ TGYNIQNFD PYLI+R
Sbjct: 350 FLRLALTLRPCAPILGAKVQSYEREEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISR 409
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDR-------RE--- 443
A+ L V F FLGRV +RS I+DS QSKQ G+R++K ++ G RE
Sbjct: 410 AQTLKVHTFPFLGRVSGLRSNIRDSSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYKL 469
Query: 444 ---TLGVKNFTFLGRVK-DIR-SVIKD 465
TL +F FLG K D++ S+I D
Sbjct: 470 RSYTLNAVSFHFLGEQKEDVQHSIITD 496
Score = 297 (109.6 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 60/90 (66%), Positives = 72/90 (80%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
R +TL V F FLGRV +RS I+DS QSKQ G+R++K ++ GRV D+L VLLREYK
Sbjct: 409 RAQTLKVHTFPFLGRVSGLRSNIRDSSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYK 468
Query: 501 LRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 469 LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 498
Score = 37 (18.1 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 10 WSRAPPPELNPKEDKI-VFQQISIEHYTGE--------PIPGMPGSQLKPVPI 53
W P + + E+++ + +++ EH E P+ G P Q P I
Sbjct: 23 WDEDEPFQPSQFEEELALMEEMEAEHRLQEQEEELLQPPLEGAPDGQFSPTAI 75
>UNIPROTKB|F1RH32 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:FP102476 RefSeq:XP_003127412.2 Ensembl:ENSSSCT00000003572
GeneID:100525752 KEGG:ssc:100525752 Uniprot:F1RH32
Length = 1107
Score = 687 (246.9 bits), Expect = 4.9e-96, Sum P(2) = 4.9e-96
Identities = 145/335 (43%), Positives = 198/335 (59%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTG--EPIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R PP L+P+ + ++FQQ+ I+HY G P+PG P VP++R FGVT +G SV
Sbjct: 78 RWLRPTPPTLDPQTEPLIFQQLEIDHYVGPARPLPGAPPPSQSSVPVLRAFGVTDDGVSV 137
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F H + LN AI D RG K+ AVL VE+ +++
Sbjct: 138 CCHIHGFAPYFYTPAPPGFGPEHLSDLQRELNAAISRDQRGGKELTGPAVLAVELCSRES 197
Query: 127 VFGFWGEELENFLKITESV----FPT------------FPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT ++ P T ++ +E+N+DF+IRFMVD
Sbjct: 198 MFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVAGLGTPSFAPYEANVDFEIRFMVD 257
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
D+VGCNW+E+P GK+ LR + K + CQLE DV D+VSH P
Sbjct: 258 ADVVGCNWLELPAGKYLLRPEGK--------ATLCQLEADVLWSDVVSH-P--------- 299
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E F++
Sbjct: 300 -----PEGPWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP-FLRL 353
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTM 325
TL CAPI+G++V + E +LL WS FIR M
Sbjct: 354 ALTLRPCAPILGAKVQSYEREEDLLQAWSNFIRVM 388
Score = 301 (111.0 bits), Expect = 4.9e-96, Sum P(2) = 4.9e-96
Identities = 69/147 (46%), Positives = 92/147 (62%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++ TL CAPI+G++V + E +LL WS FIR +DPD+ TGYNIQNFD PYLI+R
Sbjct: 350 FLRLALTLRPCAPILGAKVQSYEREEDLLQAWSNFIRVMDPDVITGYNIQNFDLPYLISR 409
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDR-------RE--- 443
A+ L V+ F FLGRV +RS I+DS QSKQ G+R++K ++ G RE
Sbjct: 410 AQTLKVQTFPFLGRVSGLRSNIRDSSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYKL 469
Query: 444 ---TLGVKNFTFLGRVK-DIR-SVIKD 465
TL +F FLG K D++ S+I D
Sbjct: 470 RSYTLNAVSFHFLGEQKEDVQHSIITD 496
Score = 299 (110.3 bits), Expect = 7.9e-96, Sum P(2) = 7.9e-96
Identities = 60/90 (66%), Positives = 73/90 (81%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
R +TL V+ F FLGRV +RS I+DS QSKQ G+R++K ++ GRV D+L VLLREYK
Sbjct: 409 RAQTLKVQTFPFLGRVSGLRSNIRDSSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYK 468
Query: 501 LRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 469 LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 498
>UNIPROTKB|P28340 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IDA;IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IDA;TAS] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006287 "base-excision repair, gap-filling" evidence=IDA]
[GO:0000109 "nucleotide-excision repair complex" evidence=IDA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IC;IMP;TAS] [GO:0009411 "response to UV" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 EMBL:AY129569
GO:GO:0007346 GO:GO:0009411 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000722 GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283
GO:GO:0043137 GO:GO:0003887 GO:GO:0032201 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
OMA:MIEQTKQ GO:GO:0043625 EMBL:M80397 EMBL:M81735 EMBL:BC008800
IPI:IPI00002894 PIR:A41618 RefSeq:NP_001243778.1 RefSeq:NP_002682.2
UniGene:Hs.279413 ProteinModelPortal:P28340 SMR:P28340
IntAct:P28340 MINT:MINT-1414678 STRING:P28340 PhosphoSite:P28340
DMDM:50403732 PaxDb:P28340 PRIDE:P28340 DNASU:5424
Ensembl:ENST00000440232 GeneID:5424 KEGG:hsa:5424 UCSC:uc002psb.4
GeneCards:GC19P050889 H-InvDB:HIX0202825 HGNC:HGNC:9175
HPA:CAB004375 MIM:174761 neXtProt:NX_P28340 PharmGKB:PA33496
PhylomeDB:P28340 BindingDB:P28340 ChEMBL:CHEMBL2735 GenomeRNAi:5424
NextBio:20985 PMAP-CutDB:P28340 Bgee:P28340 CleanEx:HS_POLD1
Genevestigator:P28340 GermOnline:ENSG00000062822 GO:GO:0000109
Uniprot:P28340
Length = 1107
Score = 694 (249.4 bits), Expect = 7.1e-96, Sum P(2) = 7.1e-96
Identities = 147/335 (43%), Positives = 200/335 (59%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTG--EPIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R PP L+P+ + ++FQQ+ I+HY G +P+PG P VP++R FGVT EG SV
Sbjct: 78 RWLRPTPPALDPQTEPLIFQQLEIDHYVGPAQPVPGGPPPSRGSVPVLRAFGVTDEGFSV 137
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F H + LN AI D RG ++ AVL VE+ +++
Sbjct: 138 CCHIHGFAPYFYTPAPPGFGPEHMGDLQRELNLAISRDSRGGRELTGPAVLAVELCSRES 197
Query: 127 VFGFWGEELENFLKITES----VFPT------------FPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT + V P T ++ +E+N+DF+IRFMVD
Sbjct: 198 MFGYHGHGPSPFLRITVALPRLVAPARRLLEQGIRVAGLGTPSFAPYEANVDFEIRFMVD 257
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ LR + K ++CQLE DV D+VSH P
Sbjct: 258 TDIVGCNWLELPAGKYALRLKEK--------ATQCQLEADVLWSDVVSH-P--------- 299
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E F++
Sbjct: 300 -----PEGPWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP-FLRL 353
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTM 325
TL CAPI+G++V + E +LL WS FIR M
Sbjct: 354 ALTLRPCAPILGAKVQSYEKEEDLLQAWSTFIRIM 388
Score = 292 (107.8 bits), Expect = 7.1e-96, Sum P(2) = 7.1e-96
Identities = 68/147 (46%), Positives = 90/147 (61%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++ TL CAPI+G++V + E +LL WS FIR +DPD+ TGYNIQNFD PYLI+R
Sbjct: 350 FLRLALTLRPCAPILGAKVQSYEKEEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISR 409
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDR-------RE--- 443
A+ L V+ F FLGRV + S I+DS QSKQ G+R+ K ++ G RE
Sbjct: 410 AQTLKVQTFPFLGRVAGLCSNIRDSSFQSKQTGRRDTKVVSMVGRVQMDMLQVLLREYKL 469
Query: 444 ---TLGVKNFTFLGRVK-DIR-SVIKD 465
TL +F FLG K D++ S+I D
Sbjct: 470 RSYTLNAVSFHFLGEQKEDVQHSIITD 496
Score = 289 (106.8 bits), Expect = 1.5e-95, Sum P(2) = 1.5e-95
Identities = 59/90 (65%), Positives = 71/90 (78%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
R +TL V+ F FLGRV + S I+DS QSKQ G+R+ K ++ GRV D+L VLLREYK
Sbjct: 409 RAQTLKVQTFPFLGRVAGLCSNIRDSSFQSKQTGRRDTKVVSMVGRVQMDMLQVLLREYK 468
Query: 501 LRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 469 LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 498
>UNIPROTKB|P28339 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IC] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=TAS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 EMBL:M80395 IPI:IPI00706072 PIR:A39299
RefSeq:NP_776852.1 UniGene:Bt.4749 ProteinModelPortal:P28339
IntAct:P28339 STRING:P28339 PRIDE:P28339 GeneID:281990
KEGG:bta:281990 CTD:5424 HOVERGEN:HBG051395 KO:K02327
BindingDB:P28339 ChEMBL:CHEMBL4057 NextBio:20805858
InterPro:IPR025687 Pfam:PF14260 Uniprot:P28339
Length = 1106
Score = 688 (247.2 bits), Expect = 2.3e-94, Sum P(2) = 2.3e-94
Identities = 146/335 (43%), Positives = 198/335 (59%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTG--EPIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R PP L+P+ + ++FQQ+ I+HY P+PG P VPI+R FGVT EG SV
Sbjct: 77 RWLRPAPPALDPQMEPLIFQQLEIDHYVAPARPLPGAPPPSQDSVPILRAFGVTNEGVSV 136
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F H + L+ AI D RG K+ AVL VE+ +++
Sbjct: 137 CCHIHGFAPYFYTPAPPGFGPEHLSELQRELSAAISRDQRGGKELTGPAVLAVELCSRES 196
Query: 127 VFGFWGEELENFLKITESV----FPT------------FPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT ++ P T ++ +E+N+DF+IRFMVD
Sbjct: 197 MFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRLAGLGTPSFAPYEANVDFEIRFMVD 256
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ LR + K + CQLE DV D++SH P
Sbjct: 257 TDIVGCNWLELPAGKYILRPEGK--------ATLCQLEADVLWSDVISH-P--------- 298
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEGEW ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E F++
Sbjct: 299 -----PEGEWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP-FLRL 352
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTM 325
TL CAPI+G++V + E +LL WS FIR M
Sbjct: 353 ALTLRPCAPILGAKVQSYEREEDLLQAWSTFIRIM 387
Score = 284 (105.0 bits), Expect = 2.3e-94, Sum P(2) = 2.3e-94
Identities = 66/147 (44%), Positives = 90/147 (61%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++ TL CAPI+G++V + E +LL WS FIR +DPD+ TGYNIQNFD PYLI+R
Sbjct: 349 FLRLALTLRPCAPILGAKVQSYEREEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISR 408
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDR-------RE--- 443
A+ L V F LGRV +RS I++S QS+Q G+R++K ++ G RE
Sbjct: 409 AQTLKVPGFPLLGRVIGLRSNIRESSFQSRQTGRRDSKVVSMVGRVQMDMLQVLLREYKL 468
Query: 444 ---TLGVKNFTFLGRVK-DIR-SVIKD 465
TL +F FLG K D++ S+I D
Sbjct: 469 RSYTLNAVSFHFLGEQKEDVQHSIITD 495
Score = 281 (104.0 bits), Expect = 4.8e-94, Sum P(2) = 4.8e-94
Identities = 57/90 (63%), Positives = 71/90 (78%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
R +TL V F LGRV +RS I++S QS+Q G+R++K ++ GRV D+L VLLREYK
Sbjct: 408 RAQTLKVPGFPLLGRVIGLRSNIRESSFQSRQTGRRDSKVVSMVGRVQMDMLQVLLREYK 467
Query: 501 LRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 468 LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 497
>RGD|621839 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IEA;ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO;IMP;IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA;ISO;IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IEA;ISO;IBA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA;ISO;IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IC;IBA] [GO:0045004 "DNA replication
proofreading" evidence=IEA;ISO;IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 674 (242.3 bits), Expect = 5.7e-94, Sum P(2) = 5.7e-94
Identities = 141/335 (42%), Positives = 197/335 (58%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTGE--PIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R P L+P + ++FQQ+ I+HY G P+P P + VPI+R FGVT EG SV
Sbjct: 74 RWLRPTPLALDPSTEPLIFQQLEIDHYVGTSPPLPEGPPASRNSVPILRAFGVTDEGFSV 133
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F + H + LN AI D RG K+ AVL +E+ +++
Sbjct: 134 CCHIHGFAPYFYTPAPPGFGAEHLSELQRELNAAISRDQRGGKELSGPAVLAIELCSRES 193
Query: 127 VFGFWGEELENFLKITESV----------------FPTFPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT ++ P T ++ +E+N+DF+IRFMVD
Sbjct: 194 MFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLGTPSFAPYEANVDFEIRFMVD 253
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ R + K + CQLE+DV D++SH P
Sbjct: 254 ADIVGCNWLELPAGKYVRRAEKK--------ATLCQLEVDVLWSDVISH-P--------- 295
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG+W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E F++
Sbjct: 296 -----PEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP-FLRL 349
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTM 325
TL CAPI+G++V + E +LL W+ FI M
Sbjct: 350 ALTLRPCAPILGAKVQSYEREEDLLQAWATFILAM 384
Score = 295 (108.9 bits), Expect = 5.7e-94, Sum P(2) = 5.7e-94
Identities = 59/90 (65%), Positives = 73/90 (81%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
R +TL V F FLGRV +RS I+DS QS+Q+G+R++K ++ GRV D+L VLLREYK
Sbjct: 405 RAQTLKVDRFPFLGRVTGLRSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREYK 464
Query: 501 LRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 465 LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 494
Score = 291 (107.5 bits), Expect = 1.5e-93, Sum P(2) = 1.5e-93
Identities = 68/158 (43%), Positives = 96/158 (60%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++ TL CAPI+G++V + E +LL W+ FI +DPD+ TGYNIQNFD PYLI+R
Sbjct: 346 FLRLALTLRPCAPILGAKVQSYEREEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISR 405
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDR-------RE--- 443
A+ L V F FLGRV +RS I+DS QS+Q+G+R++K ++ G RE
Sbjct: 406 AQTLKVDRFPFLGRVTGLRSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREYKL 465
Query: 444 ---TLGVKNFTFLGRVK-DIR-SVIKDSFIQSKQMGKR 476
TL +F FLG K D++ S+I D ++Q +R
Sbjct: 466 RSYTLNAVSFHFLGEQKEDVQHSIITDLQNGNEQTRRR 503
>UNIPROTKB|O54747 [details] [associations]
symbol:Pold1 "DNA polymerase delta catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 674 (242.3 bits), Expect = 5.7e-94, Sum P(2) = 5.7e-94
Identities = 141/335 (42%), Positives = 197/335 (58%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTGE--PIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R P L+P + ++FQQ+ I+HY G P+P P + VPI+R FGVT EG SV
Sbjct: 74 RWLRPTPLALDPSTEPLIFQQLEIDHYVGTSPPLPEGPPASRNSVPILRAFGVTDEGFSV 133
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F + H + LN AI D RG K+ AVL +E+ +++
Sbjct: 134 CCHIHGFAPYFYTPAPPGFGAEHLSELQRELNAAISRDQRGGKELSGPAVLAIELCSRES 193
Query: 127 VFGFWGEELENFLKITESV----------------FPTFPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT ++ P T ++ +E+N+DF+IRFMVD
Sbjct: 194 MFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLGTPSFAPYEANVDFEIRFMVD 253
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ R + K + CQLE+DV D++SH P
Sbjct: 254 ADIVGCNWLELPAGKYVRRAEKK--------ATLCQLEVDVLWSDVISH-P--------- 295
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG+W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E F++
Sbjct: 296 -----PEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP-FLRL 349
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTM 325
TL CAPI+G++V + E +LL W+ FI M
Sbjct: 350 ALTLRPCAPILGAKVQSYEREEDLLQAWATFILAM 384
Score = 295 (108.9 bits), Expect = 5.7e-94, Sum P(2) = 5.7e-94
Identities = 59/90 (65%), Positives = 73/90 (81%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
R +TL V F FLGRV +RS I+DS QS+Q+G+R++K ++ GRV D+L VLLREYK
Sbjct: 405 RAQTLKVDRFPFLGRVTGLRSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREYK 464
Query: 501 LRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 465 LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 494
Score = 291 (107.5 bits), Expect = 1.5e-93, Sum P(2) = 1.5e-93
Identities = 68/158 (43%), Positives = 96/158 (60%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++ TL CAPI+G++V + E +LL W+ FI +DPD+ TGYNIQNFD PYLI+R
Sbjct: 346 FLRLALTLRPCAPILGAKVQSYEREEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISR 405
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDR-------RE--- 443
A+ L V F FLGRV +RS I+DS QS+Q+G+R++K ++ G RE
Sbjct: 406 AQTLKVDRFPFLGRVTGLRSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREYKL 465
Query: 444 ---TLGVKNFTFLGRVK-DIR-SVIKDSFIQSKQMGKR 476
TL +F FLG K D++ S+I D ++Q +R
Sbjct: 466 RSYTLNAVSFHFLGEQKEDVQHSIITDLQNGNEQTRRR 503
>MGI|MGI:97741 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10090 "Mus musculus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IBA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=ISO] [GO:0006261 "DNA-dependent DNA replication"
evidence=ISO] [GO:0006287 "base-excision repair, gap-filling"
evidence=ISO;IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO;IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 MGI:MGI:97741 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 GO:GO:0000109 EMBL:Z21848 EMBL:AF024570 EMBL:AK167569
EMBL:AK168967 EMBL:AK169040 IPI:IPI00323143 PIR:S40243
RefSeq:NP_035261.3 UniGene:Mm.16549 ProteinModelPortal:P52431
SMR:P52431 IntAct:P52431 STRING:P52431 PhosphoSite:P52431
PaxDb:P52431 PRIDE:P52431 Ensembl:ENSMUST00000049343 GeneID:18971
KEGG:mmu:18971 InParanoid:Q3TFX6 OrthoDB:EOG4KWJS2 ChiTaRS:POLD1
NextBio:295320 PMAP-CutDB:P52431 Bgee:P52431 Genevestigator:P52431
GermOnline:ENSMUSG00000038644 Uniprot:P52431
Length = 1105
Score = 655 (235.6 bits), Expect = 2.6e-91, Sum P(2) = 2.6e-91
Identities = 139/335 (41%), Positives = 195/335 (58%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTGE--PIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R L+P + ++FQQ+ I+HY G P+P P VPI+R FGVT EG SV
Sbjct: 76 RWRRPTLRALDPSTEPLIFQQLEIDHYVGSAPPLPEGPLPSRNSVPILRAFGVTDEGFSV 135
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+ GF+PY Y AP F + H ++ LN AI D RG K+ AVL +E+ +++
Sbjct: 136 CCHIQGFAPYFYTPAPPGFGAEHLSELQQELNAAISRDQRGGKELSGPAVLAIELCSRES 195
Query: 127 VFGFWGEELENFLKITESV----------------FPTFPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT ++ P T ++ +E+N+DF+IRFMVD
Sbjct: 196 MFGYHGHGPSPFLRITLALPRLMAPARRLLEQGVRVPGLGTPSFAPYEANVDFEIRFMVD 255
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ R + K + CQLE+DV D++SH P
Sbjct: 256 ADIVGCNWLELPAGKYVRRAEKK--------ATLCQLEVDVLWSDVISH-P--------- 297
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
PEG+W ++APLR+LSFDIECAGRKGIFP+P DP+IQI ++ + G E F++
Sbjct: 298 -----PEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEP-FLRL 351
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTM 325
TL CAPI+G++V + E +LL W+ FI M
Sbjct: 352 ALTLRPCAPILGAKVQSYEREEDLLQAWADFILAM 386
Score = 290 (107.1 bits), Expect = 2.6e-91, Sum P(2) = 2.6e-91
Identities = 69/158 (43%), Positives = 96/158 (60%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++ TL CAPI+G++V + E +LL W+ FI +DPD+ TGYNIQNFD PYLI+R
Sbjct: 348 FLRLALTLRPCAPILGAKVQSYEREEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISR 407
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDR-------RE--- 443
A+ L V F FLGRV +RS I+DS QS+Q+G+R++K I+ G RE
Sbjct: 408 AQALKVDRFPFLGRVTGLRSNIRDSSFQSRQVGRRDSKVISMVGRVQMDMLQVLLREHKL 467
Query: 444 ---TLGVKNFTFLGRVK-DIR-SVIKDSFIQSKQMGKR 476
TL +F FLG K D++ S+I D ++Q +R
Sbjct: 468 RSYTLNAVSFHFLGEQKEDVQHSIITDLQNGNEQTRRR 505
Score = 286 (105.7 bits), Expect = 6.8e-91, Sum P(2) = 6.8e-91
Identities = 58/90 (64%), Positives = 72/90 (80%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
R + L V F FLGRV +RS I+DS QS+Q+G+R++K I+ GRV D+L VLLRE+K
Sbjct: 407 RAQALKVDRFPFLGRVTGLRSNIRDSSFQSRQVGRRDSKVISMVGRVQMDMLQVLLREHK 466
Query: 501 LRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 467 LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 496
>UNIPROTKB|E1BNZ6 [details] [associations]
symbol:E1BNZ6 "DNA polymerase" species:9913 "Bos taurus"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 IPI:IPI00706072
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:DAAA02047499 EMBL:DAAA02047500 Ensembl:ENSBTAT00000014714
Uniprot:E1BNZ6
Length = 984
Score = 564 (203.6 bits), Expect = 9.3e-81, Sum P(2) = 9.3e-81
Identities = 120/275 (43%), Positives = 161/275 (58%)
Query: 9 KWSRAPPPELNPKEDKIVFQQISIEHYTG--EPIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R PPP L+P+ + ++FQQ+ I+HY P+PG P VPI+R FGVT EG SV
Sbjct: 77 RWLRPPPPALDPQMEPLIFQQLEIDHYVAPARPLPGAPPPSQDSVPILRAFGVTDEGVSV 136
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CCH+HGF+PY Y AP F H + L+ AI D RG K+ AVL VE+ +++
Sbjct: 137 CCHIHGFAPYFYTPAPPGFGPEHLSELQRELSAAISRDQRGGKELTGPAVLAVELCSRES 196
Query: 127 VFGFWGEELENFLKITESV----FPT------------FPTHTYKAFESNIDFDIRFMVD 170
+FG+ G FL+IT ++ P T ++ +E+N+DF+IRFMVD
Sbjct: 197 MFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRLAGLGTPSFAPYEANVDFEIRFMVD 256
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
DIVGCNW+E+P GK+ LR + K + CQLE DV D++SH P
Sbjct: 257 TDIVGCNWLELPAGKYILRPEGK--------ATLCQLEADVLWSDVISH-P--------- 298
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDP 265
PEGEW ++APLR+LSFDIECAGRKG+ P P
Sbjct: 299 -----PEGEWQRIAPLRVLSFDIECAGRKGLSPGP 328
Score = 281 (104.0 bits), Expect = 9.3e-81, Sum P(2) = 9.3e-81
Identities = 57/90 (63%), Positives = 71/90 (78%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
R +TL V F LGRV +RS I++S QS+Q G+R++K ++ GRV D+L VLLREYK
Sbjct: 408 RAQTLKVPGFPLLGRVIGLRSNIRESSFQSRQTGRRDSKVVSMVGRVQMDMLQVLLREYK 467
Query: 501 LRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
LRSYTLN+VS+HFL EQKEDVQHSII+DLQ
Sbjct: 468 LRSYTLNAVSFHFLGEQKEDVQHSIITDLQ 497
Score = 226 (84.6 bits), Expect = 5.8e-75, Sum P(2) = 5.8e-75
Identities = 54/116 (46%), Positives = 71/116 (61%)
Query: 365 WSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQ 424
WS FIR +DPD+ TGYNIQNFD PYLI+RA+ L V F LGRV +RS I++S QS+Q
Sbjct: 380 WSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVPGFPLLGRVIGLRSNIRESSFQSRQ 439
Query: 425 MGKRENKTINFEGNSDR-------RE------TLGVKNFTFLGRVK-DIR-SVIKD 465
G+R++K ++ G RE TL +F FLG K D++ S+I D
Sbjct: 440 TGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITD 495
>DICTYBASE|DDB_G0285381 [details] [associations]
symbol:polD1 "DNA polymerase delta subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;IBA]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0285381 GO:GO:0007346
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000079 GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 OMA:MIEQTKQ GO:GO:0043625 RefSeq:XP_638283.1
HSSP:P26811 STRING:Q54N97 EnsemblProtists:DDB0232268 GeneID:8625091
KEGG:ddi:DDB_G0285381 ProtClustDB:PTZ00166 Uniprot:Q54N97
Length = 1104
Score = 542 (195.9 bits), Expect = 3.4e-76, Sum P(2) = 3.4e-76
Identities = 129/330 (39%), Positives = 195/330 (59%)
Query: 10 WSRAPPPELNPKEDKIVFQQISIEHYTG--EPIPGMPGSQLKPVPIVRMFGVTMEGNSVC 67
WSR P +L P + ++FQQ+ ++ YT EP+PGMPG ++ P+P +R+FGVT EGNSV
Sbjct: 85 WSRKPVQDLVPHKKPLIFQQLEVD-YTEIKEPVPGMPGPKVGPLPAIRLFGVTKEGNSVL 143
Query: 68 CHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAI-IADMRGNKDEIQEAVLMVEIVQKQT 126
C VHGF PY ++S P F C++ K LN ++ ++ + N+ +I+ V+ ++I +K++
Sbjct: 144 CKVHGFLPYFFISCPPGFTEADCKSLKHDLNESMKMSSNQSNEKDIENIVVSIDIEKKKS 203
Query: 127 VFGFWGEELENFLKITESVFPTFPTHTYKAFESNID-FDI------RFMV-DNDIVGCNW 178
+ G+ L +F++IT + P F T + FES F I ++ +++I+
Sbjct: 204 IMGYNPNPLSDFIRIT-LILPKFVTRCREIFESGRHHFTIPGQPFRQYQTYESNILFALR 262
Query: 179 IEIPPG----KW-QLRGQ-HKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIV 232
I G W +L +K S T P VS CQ+E+D S + I+S +S DD
Sbjct: 263 FLIDKGITGCSWIELPANTYKLSET--P-VSTCQIEVDTSLETIIS-------LSDDD-- 310
Query: 233 SHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNVF 292
+P AP RILSFDIECAGRKG+FP+P DP+IQI+N+ + G +E F+KN+F
Sbjct: 311 --SP-------APYRILSFDIECAGRKGVFPEPEKDPVIQISNIVKNNGDAEP-FIKNIF 360
Query: 293 TLNTCAPIVGSQVICCKTETELLDKWSAFI 322
TL C+ IVG+ VI K E +LL +W F+
Sbjct: 361 TLKGCSSIVGAHVIPHKREEDLLREWRKFV 390
Score = 264 (98.0 bits), Expect = 3.4e-76, Sum P(2) = 3.4e-76
Identities = 50/106 (47%), Positives = 69/106 (65%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F+KN+FTL C+ IVG+ VI K E +LL +W F+ ++DPD+ GYNI NFD PYLI+R
Sbjct: 355 FIKNIFTLKGCSSIVGAHVIPHKREEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISR 414
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNS 439
A+ L + F LGR+K S IK + S +G RE+K I+ G +
Sbjct: 415 ARQLKIPEFALLGRIKTTISKIKSTRFSSSNLGTRESKEISMPGRT 460
Score = 218 (81.8 bits), Expect = 2.4e-71, Sum P(2) = 2.4e-71
Identities = 46/90 (51%), Positives = 59/90 (65%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYK 500
R L + F LGR+K S IK + S +G RE+K I+ GR FDL+ + R++K
Sbjct: 414 RARQLKIPEFALLGRIKTTISKIKSTRFSSSNLGTRESKEISMPGRTQFDLMQAIQRDHK 473
Query: 501 LRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
L SY+LN+VS HFL+EQKEDV SIISDLQ
Sbjct: 474 LTSYSLNNVSAHFLKEQKEDVHFSIISDLQ 503
>UNIPROTKB|Q9LRE6 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:39947 "Oryza sativa Japonica Group" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0051539
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 EMBL:AB037899
EMBL:AC128644 EMBL:AC134047 RefSeq:NP_001067405.1 UniGene:Os.3738
ProteinModelPortal:Q9LRE6 STRING:Q9LRE6 PRIDE:Q9LRE6
EnsemblPlants:LOC_Os11g08330.1 GeneID:4349968
KEGG:dosa:Os11t0186400-00 KEGG:osa:4349968 Gramene:Q9LRE6
ProtClustDB:CLSN2698457 Uniprot:Q9LRE6
Length = 1105
Score = 541 (195.5 bits), Expect = 1.0e-74, Sum P(2) = 1.0e-74
Identities = 134/334 (40%), Positives = 185/334 (55%)
Query: 9 KWSR-APPPEL-NPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSV 66
+W R A P +L + + FQQ+ I++ GE + + P I+R+FGVT EG+SV
Sbjct: 85 RWRRPALPADLASGCSRNVAFQQLEIDYVIGESHKVLLPNSSGPAAILRIFGVTREGHSV 144
Query: 67 CCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQT 126
CC VHGF PY Y+S P F + L + D N + + V +E+VQKQT
Sbjct: 145 CCQVHGFEPYFYISCPMGMGPDDISRFHQTLEGRM-KDSNRNSN-VPRFVKRIELVQKQT 202
Query: 127 VFGFWGEELENFLKITESVFPTFP-----------------THTYKAFESNIDFDIRFMV 169
+ + ++ + FLKI ++ PT + ++ +ESNI F +RFM+
Sbjct: 203 IMHYQPQQSQPFLKIVVAL-PTMVASCRGILERGITIEGLGSKSFLTYESNILFALRFMI 261
Query: 170 DNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTD 229
D +IVG NWIE+P GK+ + +S CQLE+D + S
Sbjct: 262 DCNIVGGNWIEVPAGKYMKAAR---------IMSYCQLELDC----LYS----------- 297
Query: 230 DIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVK 289
D+VSHA EGE SK+AP RILSFDIECAGRKG FP+P HDP+IQIAN+ QG + FV+
Sbjct: 298 DLVSHAAEGEHSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQP-FVR 356
Query: 290 NVFTLNTCAPIVGSQVICCKTETELLDKWSAFIR 323
NV TL +C+PIVG V+ TE ++L W FIR
Sbjct: 357 NVMTLKSCSPIVGVDVMSFDTERDVLLAWRDFIR 390
Score = 264 (98.0 bits), Expect = 3.4e-19, P = 3.4e-19
Identities = 53/111 (47%), Positives = 72/111 (64%)
Query: 327 QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFD 386
QG + FV+NV TL +C+PIVG V+ TE ++L W FIRE+DPDI GYNI FD
Sbjct: 348 QGEGQP-FVRNVMTLKSCSPIVGVDVMSFDTERDVLLAWRDFIREVDPDIIIGYNICKFD 406
Query: 387 FPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
PYLI RA+ L + F LGR+++ R ++D+ S+Q G RE+K + EG
Sbjct: 407 LPYLIERAEVLKIVEFPILGRIRNSRVRVRDTTFSSRQYGMRESKDVAVEG 457
Score = 251 (93.4 bits), Expect = 1.0e-74, Sum P(2) = 1.0e-74
Identities = 51/91 (56%), Positives = 65/91 (71%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
+R E L + F LGR+++ R ++D+ S+Q G RE+K + EGRV FDLL + R+Y
Sbjct: 412 ERAEVLKIVEFPILGRIRNSRVRVRDTTFSSRQYGMRESKDVAVEGRVQFDLLQAMQRDY 471
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
KL SY+LNSVS HFL EQKEDV HSIISDLQ
Sbjct: 472 KLSSYSLNSVSAHFLGEQKEDVHHSIISDLQ 502
>ASPGD|ASPL0000065466 [details] [associations]
symbol:AN7325 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 503 (182.1 bits), Expect = 2.9e-73, Sum P(2) = 2.9e-73
Identities = 132/341 (38%), Positives = 180/341 (52%)
Query: 5 QTSDKWSRAPPPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGN 64
+ +W R P E +P +D I FQQI E T + KP +R+FGVT G
Sbjct: 84 EKDQQWERPPLGEFDPTKDNICFQQIDAEEGT---------TMGKPA--IRLFGVTEAGQ 132
Query: 65 SVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQK 124
SV HV GF YLY++AP F C + RA + G + + V+I +
Sbjct: 133 SVLLHVTGFQHYLYIAAPVGFTKEDCDPY-----RAFLESKIG---QFPPVIQSVQITMR 184
Query: 125 QTVFGFWGEELENFLKIT----------ESVFPT-FPTHTYKAFESNID-----FD---- 164
+ ++GF G + +LKIT S T T YK +N D FD
Sbjct: 185 ENIYGFQGNKKSYYLKITVTEPRHISKLRSALETKAQTVNYKGLWTNADGGILTFDNIQY 244
Query: 165 -IRFMVDNDIVGCNWIEIPPGKWQLRG-QHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPE 222
+RFM+D DI G +W+E P GK++L Q K SN CQLE
Sbjct: 245 LLRFMIDTDIQGMSWVEAPAGKYELIAPQDKVSN--------CQLEA------------- 283
Query: 223 EIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGA 282
ID + ++SHAP G+W+K+APLRILSFDIECAGRKGIFP+PNHDP+IQIAN+ G
Sbjct: 284 RIDYRS--LISHAPVGDWAKMAPLRILSFDIECAGRKGIFPEPNHDPVIQIANVVTRYGE 341
Query: 283 SENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIR 323
S+ F++NVF +NTC+ IV +Q++ + E ++L W FI+
Sbjct: 342 SKP-FIRNVFVMNTCSLIVNTQILEFQQEEKMLMAWRDFIQ 381
Score = 275 (101.9 bits), Expect = 2.9e-73, Sum P(2) = 2.9e-73
Identities = 50/104 (48%), Positives = 71/104 (68%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++NVF +NTC+ IV +Q++ + E ++L W FI+++DPD+ GYNI NFDFPYL++R
Sbjct: 345 FIRNVFVMNTCSLIVNTQILEFQQEEKMLMAWRDFIQKVDPDVIIGYNIANFDFPYLLDR 404
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
AKHL NF + R+ +RS KD+ SKQMG R+ K N G
Sbjct: 405 AKHLKCTNFPYWTRLNGMRSEAKDTNFSSKQMGNRDTKATNTNG 448
Score = 222 (83.2 bits), Expect = 1.1e-67, Sum P(2) = 1.1e-67
Identities = 46/90 (51%), Positives = 61/90 (67%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
DR + L NF + R+ +RS KD+ SKQMG R+ K N GR+ DLL ++ R++
Sbjct: 403 DRAKHLKCTNFPYWTRLNGMRSEAKDTNFSSKQMGNRDTKATNTNGRLQLDLLQLVQRDH 462
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDL 529
LRSYTLNSVSY FL EQKEDV H++I++L
Sbjct: 463 NLRSYTLNSVSYEFLGEQKEDVHHTMITEL 492
>UNIPROTKB|Q5AWK5 [details] [associations]
symbol:AN7325.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625
OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 503 (182.1 bits), Expect = 2.9e-73, Sum P(2) = 2.9e-73
Identities = 132/341 (38%), Positives = 180/341 (52%)
Query: 5 QTSDKWSRAPPPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGN 64
+ +W R P E +P +D I FQQI E T + KP +R+FGVT G
Sbjct: 84 EKDQQWERPPLGEFDPTKDNICFQQIDAEEGT---------TMGKPA--IRLFGVTEAGQ 132
Query: 65 SVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQK 124
SV HV GF YLY++AP F C + RA + G + + V+I +
Sbjct: 133 SVLLHVTGFQHYLYIAAPVGFTKEDCDPY-----RAFLESKIG---QFPPVIQSVQITMR 184
Query: 125 QTVFGFWGEELENFLKIT----------ESVFPT-FPTHTYKAFESNID-----FD---- 164
+ ++GF G + +LKIT S T T YK +N D FD
Sbjct: 185 ENIYGFQGNKKSYYLKITVTEPRHISKLRSALETKAQTVNYKGLWTNADGGILTFDNIQY 244
Query: 165 -IRFMVDNDIVGCNWIEIPPGKWQLRG-QHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPE 222
+RFM+D DI G +W+E P GK++L Q K SN CQLE
Sbjct: 245 LLRFMIDTDIQGMSWVEAPAGKYELIAPQDKVSN--------CQLEA------------- 283
Query: 223 EIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGA 282
ID + ++SHAP G+W+K+APLRILSFDIECAGRKGIFP+PNHDP+IQIAN+ G
Sbjct: 284 RIDYRS--LISHAPVGDWAKMAPLRILSFDIECAGRKGIFPEPNHDPVIQIANVVTRYGE 341
Query: 283 SENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIR 323
S+ F++NVF +NTC+ IV +Q++ + E ++L W FI+
Sbjct: 342 SKP-FIRNVFVMNTCSLIVNTQILEFQQEEKMLMAWRDFIQ 381
Score = 275 (101.9 bits), Expect = 2.9e-73, Sum P(2) = 2.9e-73
Identities = 50/104 (48%), Positives = 71/104 (68%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++NVF +NTC+ IV +Q++ + E ++L W FI+++DPD+ GYNI NFDFPYL++R
Sbjct: 345 FIRNVFVMNTCSLIVNTQILEFQQEEKMLMAWRDFIQKVDPDVIIGYNIANFDFPYLLDR 404
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
AKHL NF + R+ +RS KD+ SKQMG R+ K N G
Sbjct: 405 AKHLKCTNFPYWTRLNGMRSEAKDTNFSSKQMGNRDTKATNTNG 448
Score = 222 (83.2 bits), Expect = 1.1e-67, Sum P(2) = 1.1e-67
Identities = 46/90 (51%), Positives = 61/90 (67%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
DR + L NF + R+ +RS KD+ SKQMG R+ K N GR+ DLL ++ R++
Sbjct: 403 DRAKHLKCTNFPYWTRLNGMRSEAKDTNFSSKQMGNRDTKATNTNGRLQLDLLQLVQRDH 462
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDL 529
LRSYTLNSVSY FL EQKEDV H++I++L
Sbjct: 463 NLRSYTLNSVSYEFLGEQKEDVHHTMITEL 492
>SGD|S000002260 [details] [associations]
symbol:POL3 "Catalytic subunit of DNA polymerase delta"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=NAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA;TAS] [GO:0006301 "postreplication
repair" evidence=TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=TAS] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IGI] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IMP;IDA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0008296 "3'-5'-exodeoxyribonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 SGD:S000002260 GO:GO:0007346 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0051539
GO:GO:0006298 SUPFAM:SSF53098 GO:GO:0006278 GO:GO:0000084
GO:GO:0006301 EMBL:X95644 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0006272 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00560000077365
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 OrthoDB:EOG4B01XB
EMBL:X15477 EMBL:X61920 EMBL:Z74150 PIR:S67644 RefSeq:NP_010181.2
PDB:3IAY PDBsum:3IAY ProteinModelPortal:P15436 SMR:P15436
DIP:DIP-2524N IntAct:P15436 MINT:MINT-2781941 STRING:P15436
PaxDb:P15436 PeptideAtlas:P15436 EnsemblFungi:YDL102W GeneID:851456
KEGG:sce:YDL102W CYGD:YDL102w NextBio:968726 Genevestigator:P15436
GermOnline:YDL102W GO:GO:0008310 Uniprot:P15436
Length = 1097
Score = 464 (168.4 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 123/325 (37%), Positives = 171/325 (52%)
Query: 15 PPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSVCCHVHGFS 74
P + +P I FQQI E + G+ V VR FGVT EG+SV C+V GF
Sbjct: 103 PTDFDPSLYDISFQQIDAEQSV---LNGIKDENTSTV--VRFFGVTSEGHSVLCNVTGFK 157
Query: 75 PYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEE 134
YLYV AP NS+ +E +N+ + + A+ +E+V KQ+++G+ G+
Sbjct: 158 NYLYVPAP---NSSDAND-QEQINKFV----HYLNETFDHAIDSIEVVSKQSIWGYSGDT 209
Query: 135 LENFLKITESVFPTFPTHTYKAFE-----------------SNIDFDIRFMVDNDIVGCN 177
F KI + +P AFE NI + +R MVD IVG +
Sbjct: 210 KLPFWKIYVT-YPHMVNKLRTAFERGHLSFNSWFSNGTTTYDNIAYTLRLMVDCGIVGMS 268
Query: 178 WIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPE 237
WI +P GK+ + NR VS CQLE+ ++ ++++H P E
Sbjct: 269 WITLPKGKYSM-----IEPNNR--VSSCQLEVSINYRNLIAH-PAE-------------- 306
Query: 238 GEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNVFTLNTC 297
G+WS APLRI+SFDIECAGR G+FP+P +DP+IQIAN+ GA + F++NVFTLNTC
Sbjct: 307 GDWSHTAPLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKP-FIRNVFTLNTC 365
Query: 298 APIVGSQVICCKTETELLDKWSAFI 322
+PI GS + TE E+L W FI
Sbjct: 366 SPITGSMIFSHATEEEMLSNWRNFI 390
Score = 299 (110.3 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 53/104 (50%), Positives = 70/104 (67%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++NVFTLNTC+PI GS + TE E+L W FI ++DPD+ GYN NFD PYL+NR
Sbjct: 355 FIRNVFTLNTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNR 414
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
AK L V +F + GR+K ++ IK+S SK G RE K +N +G
Sbjct: 415 AKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDG 458
Score = 254 (94.5 bits), Expect = 1.0e-66, Sum P(2) = 1.0e-66
Identities = 51/91 (56%), Positives = 65/91 (71%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
+R + L V +F + GR+K ++ IK+S SK G RE K +N +GR+ DLL + REY
Sbjct: 413 NRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLDLLQFIQREY 472
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
KLRSYTLN+VS HFL EQKEDV +SIISDLQ
Sbjct: 473 KLRSYTLNAVSAHFLGEQKEDVHYSIISDLQ 503
>UNIPROTKB|Q755K6 [details] [associations]
symbol:AGOS_AFL189W "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB EMBL:AE016819
GenomeReviews:AE016819_GR RefSeq:NP_985361.2 STRING:Q755K6
EnsemblFungi:AAS53185 GeneID:4621586 KEGG:ago:AGOS_AFL189W
Uniprot:Q755K6
Length = 1092
Score = 432 (157.1 bits), Expect = 1.7e-67, Sum P(2) = 1.7e-67
Identities = 121/332 (36%), Positives = 172/332 (51%)
Query: 10 WSRAP-PPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSVCC 68
WSR P + I FQQ+ E +PG V VR FGVT +G+SV C
Sbjct: 93 WSRDKLPADFAAATHDITFQQLDAEQAV---LPGYIDGGTSAV--VRFFGVTEQGHSVLC 147
Query: 69 HVHGFSPYLYVSAPKEFNS-THCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTV 127
V GF Y+YV AP F++ T + LN DM D + ++V E+ QKQ++
Sbjct: 148 SVTGFKHYMYVPAPANFDARTDVPVLVDYLN-----DMF---DGVVDSV---EVCQKQSI 196
Query: 128 FGFWGEELENFLKIT-------ESVFPTF------PTHTY----KAFESNIDFDIRFMVD 170
+G+ G++ FLK+ + F P T+ NI + +R M+D
Sbjct: 197 WGYSGDQKLQFLKVLVADPYGLNKIRTAFEKGYITPNDTWFQGGTTTYDNIAYTLRLMID 256
Query: 171 NDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDD 230
IVG +WI +P GK+ + ++K +S CQLE+ ++ D++S P + D
Sbjct: 257 CGIVGMSWITLPKGKYAMIPKNKK-------ISTCQLEVSINYKDLISR-PADSD----- 303
Query: 231 IVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKN 290
WS APLRILSFDIECAGR G+FP+P DP+IQIAN+ G S+ F++N
Sbjct: 304 ---------WSHSAPLRILSFDIECAGRVGVFPEPEVDPVIQIANVVSIAGESKP-FIRN 353
Query: 291 VFTLNTCAPIVGSQVICCKTETELLDKWSAFI 322
VFT++TCAPI GSQ+ +TE +L W F+
Sbjct: 354 VFTVDTCAPITGSQIFEHETEEAMLKHWRDFL 385
Score = 294 (108.6 bits), Expect = 1.7e-67, Sum P(2) = 1.7e-67
Identities = 62/144 (43%), Positives = 91/144 (63%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
F++NVFT++TCAPI GSQ+ +TE +L W F+ E+DPD+ GYN NFD PYLINR
Sbjct: 350 FIRNVFTVDTCAPITGSQIFEHETEEAMLKHWRDFLVEVDPDVIIGYNTTNFDLPYLINR 409
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFL 453
A L V +F + GR+ + + VIK++ SK G RE+K+IN EG R L + F F+
Sbjct: 410 AAALNVSSFPYFGRLVNSKQVIKETVFSSKAHGTRESKSINIEG----RLQLDI--FQFV 463
Query: 454 GRVKDIRSVIKDSFIQSKQMGKRE 477
R +RS +S + + +G+++
Sbjct: 464 RREYQLRSYTLNS-VSAHFLGEQK 486
Score = 236 (88.1 bits), Expect = 2.2e-61, Sum P(2) = 2.2e-61
Identities = 48/90 (53%), Positives = 63/90 (70%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
+R L V +F + GR+ + + VIK++ SK G RE+K+IN EGR+ D+ + REY
Sbjct: 408 NRAAALNVSSFPYFGRLVNSKQVIKETVFSSKAHGTRESKSINIEGRLQLDIFQFVRREY 467
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDL 529
+LRSYTLNSVS HFL EQKEDV HSII+ L
Sbjct: 468 QLRSYTLNSVSAHFLGEQKEDVHHSIIASL 497
Score = 40 (19.1 bits), Expect = 9.0e-41, Sum P(2) = 9.0e-41
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 361 LLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGV 399
LL+K A + + TG FPYLI R + + V
Sbjct: 522 LLEKLMALVNYTEMARVTGV-----PFPYLITRGQQIKV 555
Score = 39 (18.8 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 408 VKDIRSVIKDSFIQSKQMGKRENKTINFEGNSD 440
V I V D + + G R + + +GN D
Sbjct: 34 VSSIEIVPTDRYTKQNVQGYRSTQAADTKGNGD 66
>UNIPROTKB|A8HPJ0 [details] [associations]
symbol:POLD1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 EMBL:DS496108 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GO:GO:0043625 ProtClustDB:CLSN2698457
RefSeq:XP_001689909.1 UniGene:Cre.7835 STRING:A8HPJ0
EnsemblPlants:EDP09647 GeneID:5715105 KEGG:cre:CHLREDRAFT_189721
BioCyc:CHLAMY:CHLREDRAFT_189721-MONOMER Uniprot:A8HPJ0
Length = 1091
Score = 445 (161.7 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 109/321 (33%), Positives = 159/321 (49%)
Query: 2 ECQQTSDKWSRAPPPELNPKEDKIVFQQISIEHYTGEPIPGMPGS--QLKPVPIVRMFGV 59
E + W R P + +P IVFQQ+ +++Y EP G+ ++K VP++R+FGV
Sbjct: 51 ELGEAGRNWVRPPVADFDPASTAIVFQQLEVDYYLAEPRAGVDTVPVEVKQVPVLRLFGV 110
Query: 60 TMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQ-EAVLM 118
GNSVC VHGF PY + + + H +A ALN + ++ G + AV
Sbjct: 111 NAAGNSVCALVHGFEPYFLIERRPHWGADHIQALGLALN--VGQELLGKAKGVGGPAVTR 168
Query: 119 VEIVQKQTVFGFWGEELEN-FLKITESVFPTFPTHTYKAFESNIDFDIRFMVDNDIVGCN 177
+E ++++++ F FLKI SV P E + ND V C
Sbjct: 169 IEPAERRSIWNFQPPGTSTAFLKIVVSV-PNLVAPARGLLEGGMSLS----AVNDFVKCT 223
Query: 178 WIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPE 237
E + LR V + T ++H E + D ++SHAP+
Sbjct: 224 TYESNV-LFTLRFMVDCKVVGGNWVELPAGAYQLETARPMTHCQIEAHIRYDKLISHAPD 282
Query: 238 GEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNVFTLNTC 297
GE+S VAPLRI+S DIEC GRKG FP+ DP+IQIA+M G + VKN+ TL +C
Sbjct: 283 GEYSSVAPLRIMSIDIECCGRKGCFPEAKIDPVIQIASMVSVSGKMDGPVVKNIMTLGSC 342
Query: 298 APIVGSQVICCKTETELLDKW 318
A IVG++V+ E E+L +W
Sbjct: 343 ASIVGAEVMSFNDEAEMLLRW 363
Score = 223 (83.6 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 48/111 (43%), Positives = 62/111 (55%)
Query: 328 GASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDF 387
G + VKN+ TL +CA IVG++V+ E E+L +W + E DPDI GYNI NFD
Sbjct: 326 GKMDGPVVKNIMTLGSCASIVGAEVMSFNDEAEMLLRWRDLLVESDPDIIIGYNILNFDL 385
Query: 388 PYLINRAKHLGV-KNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
PYL RA L + K F GRV+ + ++D SK G E K I EG
Sbjct: 386 PYLYERADALKIGKKFQVWGRVRGSHTRMRDGQFSSKAYGTHEYKDITIEG 436
Score = 213 (80.0 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 47/92 (51%), Positives = 59/92 (64%)
Query: 440 DRRETLGV-KNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLRE 498
+R + L + K F GRV+ + ++D SK G E K I EGRV FDLL + R+
Sbjct: 390 ERADALKIGKKFQVWGRVRGSHTRMRDGQFSSKAYGTHEYKDITIEGRVQFDLLTAIQRD 449
Query: 499 YKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
+KL SY+LNSVS HFL EQKEDV HS I+DLQ
Sbjct: 450 HKLSSYSLNSVSAHFLGEQKEDVHHSAIADLQ 481
Score = 37 (18.1 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 382 IQNFDFPYLINRAKHLGVKNFTFLG 406
+ F+ +LI R H G + LG
Sbjct: 121 VHGFEPYFLIERRPHWGADHIQALG 145
>POMBASE|SPBC336.04 [details] [associations]
symbol:cdc6 "DNA polymerase delta catalytic subunit Cdc6"
species:4896 "Schizosaccharomyces pombe" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 PomBase:SPBC336.04 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000731
GO:GO:0043137 GO:GO:0010972 GO:GO:0003887 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 EMBL:X59278 EMBL:L07734 EMBL:AB027796 PIR:S19661
PIR:T40242 PIR:T43266 RefSeq:NP_596124.1 ProteinModelPortal:P30316
IntAct:P30316 STRING:P30316 EnsemblFungi:SPBC336.04.1
GeneID:2540255 KEGG:spo:SPBC336.04 OrthoDB:EOG4B01XB
NextBio:20801385 Uniprot:P30316
Length = 1086
Score = 398 (145.2 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
Identities = 101/274 (36%), Positives = 145/274 (52%)
Query: 51 VPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKD 110
VP +R+FGVT GNS+ HV GF PY YV AP F F + L D N
Sbjct: 113 VPSIRLFGVTDNGNSILVHVVGFLPYFYVKAPVGFRPEMLERFTQDL------DATCNGG 166
Query: 111 EIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFE-SNIDFDIRFMV 169
I + +E+ K+ ++GF G E F+KI + P + FE +F+ F V
Sbjct: 167 VIDHCI--IEM--KENLYGFQGNEKSPFIKIF-TTNPRILSRARNVFERGEFNFEELFPV 221
Query: 170 DNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTD 229
VG E ++ LR + + + VS+ E ++
Sbjct: 222 G---VGVTTFESNT-QYLLRFMIDCDVVGMNWIHLPASKYQFRYQNRVSNCQIEAWINYK 277
Query: 230 DIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVK 289
D++S EG+WSK+APLRI+SFDIECAGRKG+FPDP+ DP+IQIA++ ++Q FV+
Sbjct: 278 DLISLPAEGQWSKMAPLRIMSFDIECAGRKGVFPDPSIDPVIQIASI-VTQYGDSTPFVR 336
Query: 290 NVFTLNTCAPIVGSQVICCKTETELLDKWSAFIR 323
NVF ++TC+ IVG+QV + + E+L WS F+R
Sbjct: 337 NVFCVDTCSQIVGTQVYEFQNQAEMLSSWSKFVR 370
Score = 279 (103.3 bits), Expect = 9.0e-43, Sum P(2) = 9.0e-43
Identities = 51/104 (49%), Positives = 72/104 (69%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
FV+NVF ++TC+ IVG+QV + + E+L WS F+R++DPD+ GYNI NFD PYL++R
Sbjct: 334 FVRNVFCVDTCSQIVGTQVYEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDR 393
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
AK L + NF LGR+ + SV K++ SK G RE+KT + G
Sbjct: 394 AKSLRIHNFPLLGRIHNFFSVAKETTFSSKAYGTRESKTTSIPG 437
Score = 257 (95.5 bits), Expect = 9.0e-43, Sum P(2) = 9.0e-43
Identities = 80/234 (34%), Positives = 111/234 (47%)
Query: 2 ECQQTSDK-WSRAPPPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGVT 60
E + + D+ W R P +NP++D I FQQI E +T GS VP +R+FGVT
Sbjct: 74 EIKSSKDQQWQRPALPAINPEKDDIYFQQIDSEEFT-------EGS----VPSIRLFGVT 122
Query: 61 MEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEAL----NRAII----ADMRGNKDEI 112
GNS+ HV GF PY YV AP F F + L N +I +M+ N
Sbjct: 123 DNGNSILVHVVGFLPYFYVKAPVGFRPEMLERFTQDLDATCNGGVIDHCIIEMKENLYGF 182
Query: 113 Q--EAVLMVEI-VQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFESNIDFDIRFMV 169
Q E ++I + E E +FP T FESN + +RFM+
Sbjct: 183 QGNEKSPFIKIFTTNPRILSRARNVFERGEFNFEELFPVGVGVT--TFESNTQYLLRFMI 240
Query: 170 DNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEE 223
D D+VG NWI +P K+Q R Q++ SN CQ+E ++ D++S P E
Sbjct: 241 DCDVVGMNWIHLPASKYQFRYQNRVSN--------CQIEAWINYKDLIS-LPAE 285
Score = 225 (84.3 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
Identities = 46/91 (50%), Positives = 64/91 (70%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
DR ++L + NF LGR+ + SV K++ SK G RE+KT + GR+ D+L V+ R++
Sbjct: 392 DRAKSLRIHNFPLLGRIHNFFSVAKETTFSSKAYGTRESKTTSIPGRLQLDMLQVMQRDF 451
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
KLRSY+LN+V FL EQKEDV +SII+DLQ
Sbjct: 452 KLRSYSLNAVCSQFLGEQKEDVHYSIITDLQ 482
Score = 42 (19.8 bits), Expect = 8.6e-18, Sum P(2) = 8.6e-18
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 269 PIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQV-ICCKTET 312
P+++I + + AS + + T++ AP VG + K ET
Sbjct: 948 PLLRIFEPILGEKASSLLHGDHTRTISMAAPSVGGIMKFAVKVET 992
>WB|WBGene00008645 [details] [associations]
symbol:F10C2.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0035188 "hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 320 (117.7 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
Identities = 64/167 (38%), Positives = 101/167 (60%)
Query: 271 IQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGAS 330
+ + N+ + + E + + TL+ +G + + + + + + + ++ G+
Sbjct: 260 VPVKNLIVHESDGEWAGIAPIRTLSLDIECIGRRGVFPEAIKDPIIQIANLVKIEGEAEP 319
Query: 331 ENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYL 390
FV+N F L TCAP+VGS +I C E LL+KW+ F+RE+DPDI TGYNI NFD PY+
Sbjct: 320 ---FVRNCFVLGTCAPVVGSNIIQCVNEKVLLEKWAEFVREVDPDIITGYNILNFDLPYI 376
Query: 391 INRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
++RAK L + + LGR K+ SV++D+ I SKQMG R NK+I+ G
Sbjct: 377 LDRAKVLSLPQVSHLGRQKEKGSVVRDAAISSKQMGSRVNKSIDIHG 423
Score = 288 (106.4 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 54/120 (45%), Positives = 79/120 (65%)
Query: 204 RCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFP 263
+C++ +S + S E+ V +++ H +GEW+ +AP+R LS DIEC GR+G+FP
Sbjct: 241 KCRI---LSNSEKSSRCQIEVTVPVKNLIVHESDGEWAGIAPIRTLSLDIECIGRRGVFP 297
Query: 264 DPNHDPIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIR 323
+ DPIIQIAN+ +G +E FV+N F L TCAP+VGS +I C E LL+KW+ F+R
Sbjct: 298 EAIKDPIIQIANLVKIEGEAEP-FVRNCFVLGTCAPVVGSNIIQCVNEKVLLEKWAEFVR 356
Score = 278 (102.9 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 55/91 (60%), Positives = 70/91 (76%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
DR + L + + LGR K+ SV++D+ I SKQMG R NK+I+ GR+ FD+L V+LR+Y
Sbjct: 378 DRAKVLSLPQVSHLGRQKEKGSVVRDAAISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDY 437
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
KLRSYTLNSVSY FL EQKEDV+H+II DLQ
Sbjct: 438 KLRSYTLNSVSYQFLSEQKEDVEHNIIPDLQ 468
Score = 128 (50.1 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 150 PTHTYKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEI 209
P + +ESNI+ + F+ +IVGC WIEIP GK ++ SN+ + SRCQ+E+
Sbjct: 206 PVNVGNLYESNINVIVMFLAKTNIVGCGWIEIPAGKCRI-----LSNSEKS--SRCQIEV 258
Query: 210 DVSTDDIVSH 219
V +++ H
Sbjct: 259 TVPVKNLIVH 268
Score = 117 (46.2 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 54 VRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEAL-NRAIIADMRGNKDEI 112
V+++GVT GNS+C V + P+ Y AP+ F H + A+ N A RG +
Sbjct: 86 VKLYGVTKSGNSICVIVTDYFPHFYFQAPQGFGVEHIGTAQSAICNMVAAAKRRGGSGQA 145
Query: 113 Q------EAVLMVEIVQKQTVFGFWGEELE-NFLKITES 144
Q + ++ VEIV + ++ F G + + F+K++ S
Sbjct: 146 QLPGKVVDNLVHVEIVHGENLYYFRGADTKVPFVKVSGS 184
>UNIPROTKB|P90829 [details] [associations]
symbol:F10C2.4 "DNA polymerase delta catalytic subunit"
species:6239 "Caenorhabditis elegans" [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 320 (117.7 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
Identities = 64/167 (38%), Positives = 101/167 (60%)
Query: 271 IQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTMGQGAS 330
+ + N+ + + E + + TL+ +G + + + + + + + ++ G+
Sbjct: 260 VPVKNLIVHESDGEWAGIAPIRTLSLDIECIGRRGVFPEAIKDPIIQIANLVKIEGEAEP 319
Query: 331 ENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYL 390
FV+N F L TCAP+VGS +I C E LL+KW+ F+RE+DPDI TGYNI NFD PY+
Sbjct: 320 ---FVRNCFVLGTCAPVVGSNIIQCVNEKVLLEKWAEFVREVDPDIITGYNILNFDLPYI 376
Query: 391 INRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
++RAK L + + LGR K+ SV++D+ I SKQMG R NK+I+ G
Sbjct: 377 LDRAKVLSLPQVSHLGRQKEKGSVVRDAAISSKQMGSRVNKSIDIHG 423
Score = 288 (106.4 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 54/120 (45%), Positives = 79/120 (65%)
Query: 204 RCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFP 263
+C++ +S + S E+ V +++ H +GEW+ +AP+R LS DIEC GR+G+FP
Sbjct: 241 KCRI---LSNSEKSSRCQIEVTVPVKNLIVHESDGEWAGIAPIRTLSLDIECIGRRGVFP 297
Query: 264 DPNHDPIIQIANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIR 323
+ DPIIQIAN+ +G +E FV+N F L TCAP+VGS +I C E LL+KW+ F+R
Sbjct: 298 EAIKDPIIQIANLVKIEGEAEP-FVRNCFVLGTCAPVVGSNIIQCVNEKVLLEKWAEFVR 356
Score = 278 (102.9 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 55/91 (60%), Positives = 70/91 (76%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
DR + L + + LGR K+ SV++D+ I SKQMG R NK+I+ GR+ FD+L V+LR+Y
Sbjct: 378 DRAKVLSLPQVSHLGRQKEKGSVVRDAAISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDY 437
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
KLRSYTLNSVSY FL EQKEDV+H+II DLQ
Sbjct: 438 KLRSYTLNSVSYQFLSEQKEDVEHNIIPDLQ 468
Score = 128 (50.1 bits), Expect = 8.7e-42, Sum P(3) = 8.7e-42
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 150 PTHTYKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEI 209
P + +ESNI+ + F+ +IVGC WIEIP GK ++ SN+ + SRCQ+E+
Sbjct: 206 PVNVGNLYESNINVIVMFLAKTNIVGCGWIEIPAGKCRI-----LSNSEKS--SRCQIEV 258
Query: 210 DVSTDDIVSH 219
V +++ H
Sbjct: 259 TVPVKNLIVH 268
Score = 117 (46.2 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 54 VRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEAL-NRAIIADMRGNKDEI 112
V+++GVT GNS+C V + P+ Y AP+ F H + A+ N A RG +
Sbjct: 86 VKLYGVTKSGNSICVIVTDYFPHFYFQAPQGFGVEHIGTAQSAICNMVAAAKRRGGSGQA 145
Query: 113 Q------EAVLMVEIVQKQTVFGFWGEELE-NFLKITES 144
Q + ++ VEIV + ++ F G + + F+K++ S
Sbjct: 146 QLPGKVVDNLVHVEIVHGENLYYFRGADTKVPFVKVSGS 184
>UNIPROTKB|Q8X0N7 [details] [associations]
symbol:B10H4.020 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006287 "base-excision
repair, gap-filling" evidence=IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IBA] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB HSSP:Q56366
EMBL:AL670010 ProteinModelPortal:Q8X0N7 STRING:Q8X0N7
Uniprot:Q8X0N7
Length = 1104
Score = 383 (139.9 bits), Expect = 1.3e-52, Sum P(2) = 1.3e-52
Identities = 94/270 (34%), Positives = 142/270 (52%)
Query: 54 VRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQ 113
+++FGVT GNSV HV F YLYV AP F C ++ L +
Sbjct: 128 IKLFGVTENGNSVLLHVKDFKHYLYVQAPVSFGPDDCPKYRAFLETQLAMPT-------- 179
Query: 114 EAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFESN-IDFDIRFMVDND 172
A+ V + ++ ++GF G ++K+T + P F + E+N ++ + D
Sbjct: 180 PAIHSVTLTMRENMYGFQGNTQNPYIKVTVND-PKFLPRVRRLIETNKANWKGMWKSDGS 238
Query: 173 IVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIV 232
I+ + I+ + LR S V + +D S+ E ++S D++
Sbjct: 239 IMTFDDIQ-----YLLRFMVDCSIAGMSWVEAPAGSYQL-VNDKHSNCQIEAEMSYRDLI 292
Query: 233 SHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNVF 292
+H P GEWSK+APLRILSFDIECAGRKGIFP+P HD +IQIAN+ G + FV+NVF
Sbjct: 293 AHKPVGEWSKMAPLRILSFDIECAGRKGIFPEPQHDSVIQIANIVTKYGEKKP-FVRNVF 351
Query: 293 TLNTCAPIVGSQVICCKTETELLDKWSAFI 322
L+T +PIV +Q++ E ++L +W F+
Sbjct: 352 CLDTTSPIVATQILSFDREEDMLREWRNFL 381
Score = 284 (105.0 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 53/104 (50%), Positives = 73/104 (70%)
Query: 334 FVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINR 393
FV+NVF L+T +PIV +Q++ E ++L +W F+ ++DPDI GYNI NFDFPYL++R
Sbjct: 346 FVRNVFCLDTTSPIVATQILSFDREEDMLREWRNFLEQVDPDIIIGYNIANFDFPYLLDR 405
Query: 394 AKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
AKHL VK+F F R + +RSV K++ SKQMG R+ K N G
Sbjct: 406 AKHLKVKDFDFWSRTR-VRSVAKETNFSSKQMGNRDTKATNTNG 448
Score = 231 (86.4 bits), Expect = 1.3e-52, Sum P(2) = 1.3e-52
Identities = 48/90 (53%), Positives = 64/90 (71%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
DR + L VK+F F R + +RSV K++ SKQMG R+ K N GR+ D+L ++ R+Y
Sbjct: 404 DRAKHLKVKDFDFWSRTR-VRSVAKETNFSSKQMGNRDTKATNTNGRLQLDMLQLVQRDY 462
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDL 529
+LRSYTLNSV HFL EQKEDV HS+I++L
Sbjct: 463 QLRSYTLNSVCSHFLGEQKEDVHHSMITEL 492
Score = 134 (52.2 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 40/99 (40%), Positives = 46/99 (46%)
Query: 4 QQTSDK---WSRAP-PPELNPKEDKIVFQQISIEHYTGEPIPGMPGSQLKPVPIVRMFGV 59
Q S+K W R P P NP D + FQ I E G + G Q +++FGV
Sbjct: 84 QNNSEKDQAWERPPLPATYNPATDSLCFQSIEAEE--GF----LHGGQAT----IKLFGV 133
Query: 60 TMEGNSVCCHVHGFSPYLYVSAPKEFNSTHC---RAFKE 95
T GNSV HV F YLYV AP F C RAF E
Sbjct: 134 TENGNSVLLHVKDFKHYLYVQAPVSFGPDDCPKYRAFLE 172
>UNIPROTKB|Q7RSZ8 [details] [associations]
symbol:PY00203 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
GO:GO:0043625 EMBL:AABL01000054 RefSeq:XP_729844.1
ProteinModelPortal:Q7RSZ8 STRING:Q7RSZ8 PRIDE:Q7RSZ8 GeneID:3807142
KEGG:pyo:PY00203 EuPathDB:PlasmoDB:PY00203 Uniprot:Q7RSZ8
Length = 1097
Score = 309 (113.8 bits), Expect = 2.1e-44, Sum P(2) = 2.1e-44
Identities = 94/290 (32%), Positives = 140/290 (48%)
Query: 51 VPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKD 110
VPI+R++ +T G SV +VH F PY YV P FN+ + LN + + N+
Sbjct: 119 VPIIRIYSITNCGYSVVVNVHNFFPYFYVEKPNGFNNDDMIKLESMLNETLSLN---NQF 175
Query: 111 EIQE-AVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFES---------- 159
++ E +L +E V+ +++ F +FLKIT + P K FES
Sbjct: 176 KMYENKILKIETVKTESIMYFKKSGKTDFLKITV-LLPKMVPSLKKFFESGINVNSKHFG 234
Query: 160 ------NIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVST 213
N+ F +R+++D I G +WI+ + +R ++K S S C EID+
Sbjct: 235 GIVYEANLPFILRYIIDKKITGSSWIKCEKNSYIIRSKNKQS-------SNCTFEIDIHY 287
Query: 214 DDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGI-FPDPNHDPIIQ 272
++I E + A E E+ K+ LRILSFDIEC G FP+ DPIIQ
Sbjct: 288 ENI-----EPM----------ALENEYQKIPKLRILSFDIECIKLDGKGFPEAKTDPIIQ 332
Query: 273 IANMCISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFI 322
I+++ QG K +FTL CA I GS VI E +L+ W+ F+
Sbjct: 333 ISSILYLQGDPIENCAKFIFTLLECASIPGSNVIWFNDEKTMLEAWNEFV 382
Score = 259 (96.2 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 53/129 (41%), Positives = 76/129 (58%)
Query: 309 KTETELLDKWSAFIRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAF 368
+ +T+ + + S+ + G EN K +FTL CA I GS VI E +L+ W+ F
Sbjct: 324 EAKTDPIIQISSILYLQGDPI-ENC-AKFIFTLLECASIPGSNVIWFNDEKTMLEAWNEF 381
Query: 369 IRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKR 428
+ +DPD TGYNI NFD PY++NR L +K ++GR+K+I S++KD+ SKQ G
Sbjct: 382 VIRIDPDFLTGYNIINFDIPYILNRGTALNLKKLKYIGRIKNIPSLVKDANFSSKQFGTH 441
Query: 429 ENKTINFEG 437
E K IN G
Sbjct: 442 ETKEINING 450
Score = 240 (89.5 bits), Expect = 2.1e-44, Sum P(2) = 2.1e-44
Identities = 45/91 (49%), Positives = 66/91 (72%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
+R L +K ++GR+K+I S++KD+ SKQ G E K IN GR+ FD+ ++ R+Y
Sbjct: 405 NRGTALNLKKLKYIGRIKNIPSLVKDANFSSKQFGTHETKEININGRIQFDVYDLIKRDY 464
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
+L+SYTLN VS+ FL+EQKEDV +SI++DLQ
Sbjct: 465 RLKSYTLNYVSFEFLKEQKEDVHYSIMNDLQ 495
>GENEDB_PFALCIPARUM|PF10_0165 [details] [associations]
symbol:PF10_0165 "DNA polymerase delta
catalytic subunit" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 ProtClustDB:PTZ00166 GO:GO:0008310
RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 287 (106.1 bits), Expect = 9.9e-43, Sum P(2) = 9.9e-43
Identities = 84/274 (30%), Positives = 136/274 (49%)
Query: 51 VPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKD 110
VPI+R++ + +G SV +VH F PY YV P +F++ + +N + ++
Sbjct: 116 VPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPDDFDNEDLIKLEMLMNENL--NLNSQYK 173
Query: 111 EIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFESNIDFDIRFMVD 170
++ +L +EIV+ +++ F ++FLKIT + P K FE + V+
Sbjct: 174 IYEKKILKIEIVKTESLMYFKKNGKKDFLKITV-LLPKMVPSLKKYFEGIVH------VN 226
Query: 171 NDIVGCNWIEIP-PGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTD 229
N +G E P + HK + ++ + I + + +S+ EID+S +
Sbjct: 227 NKSIGGIVYEANLPFILRYIIDHKITGSSWINCKKGHYYIR-NKNKKISNCTFEIDISYE 285
Query: 230 DIVSHAPEGEWSKVAPLRILSFDIECAGRKGI-FPDPNHDPIIQIANMCISQGASENIFV 288
+ E E+ ++ LRILSFDIEC G FP+ +DPIIQI+++ QG +
Sbjct: 286 HVEPITLENEYQQIPKLRILSFDIECIKLDGKGFPEAKNDPIIQISSILYFQGEPIDNCT 345
Query: 289 KNVFTLNTCAPIVGSQVICCKTETELLDKWSAFI 322
K +FTL CA I GS VI E LL+ W+ FI
Sbjct: 346 KFIFTLLECASIPGSNVIWFNDEKTLLEAWNEFI 379
Score = 268 (99.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 67/165 (40%), Positives = 87/165 (52%)
Query: 327 QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFD 386
QG + K +FTL CA I GS VI E LL+ W+ FI +DPD TGYNI NFD
Sbjct: 337 QGEPIDNCTKFIFTLLECASIPGSNVIWFNDEKTLLEAWNEFIIRIDPDFLTGYNIINFD 396
Query: 387 FPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSD------ 440
PY++NR L +K FLGR+K++ S +KDS SKQ G E K IN G
Sbjct: 397 LPYILNRGTALNLKKLKFLGRIKNVASTVKDSSFSSKQFGTHETKEINIFGRIQFDVYDL 456
Query: 441 -RRE------TLGVKNFTFLGRVK-DIR-SVIKDSFIQSKQMGKR 476
+R+ TL +F FL K D+ S++ D +S + KR
Sbjct: 457 IKRDYKLKSYTLNYVSFEFLKEQKEDVHYSIMNDLQNESPESRKR 501
Score = 248 (92.4 bits), Expect = 9.9e-43, Sum P(2) = 9.9e-43
Identities = 48/91 (52%), Positives = 65/91 (71%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
+R L +K FLGR+K++ S +KDS SKQ G E K IN GR+ FD+ ++ R+Y
Sbjct: 402 NRGTALNLKKLKFLGRIKNVASTVKDSSFSSKQFGTHETKEINIFGRIQFDVYDLIKRDY 461
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
KL+SYTLN VS+ FL+EQKEDV +SI++DLQ
Sbjct: 462 KLKSYTLNYVSFEFLKEQKEDVHYSIMNDLQ 492
Score = 39 (18.8 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 21 KEDKIVFQQISIEHYTGEPI 40
K D I+ Q SI ++ GEPI
Sbjct: 323 KNDPII-QISSILYFQGEPI 341
>UNIPROTKB|Q7KQL4 [details] [associations]
symbol:PF10_0165 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=ISS] [GO:0043625 "delta DNA
polymerase complex" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 ProtClustDB:PTZ00166
GO:GO:0008310 RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 287 (106.1 bits), Expect = 9.9e-43, Sum P(2) = 9.9e-43
Identities = 84/274 (30%), Positives = 136/274 (49%)
Query: 51 VPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKD 110
VPI+R++ + +G SV +VH F PY YV P +F++ + +N + ++
Sbjct: 116 VPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPDDFDNEDLIKLEMLMNENL--NLNSQYK 173
Query: 111 EIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFESNIDFDIRFMVD 170
++ +L +EIV+ +++ F ++FLKIT + P K FE + V+
Sbjct: 174 IYEKKILKIEIVKTESLMYFKKNGKKDFLKITV-LLPKMVPSLKKYFEGIVH------VN 226
Query: 171 NDIVGCNWIEIP-PGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTD 229
N +G E P + HK + ++ + I + + +S+ EID+S +
Sbjct: 227 NKSIGGIVYEANLPFILRYIIDHKITGSSWINCKKGHYYIR-NKNKKISNCTFEIDISYE 285
Query: 230 DIVSHAPEGEWSKVAPLRILSFDIECAGRKGI-FPDPNHDPIIQIANMCISQGASENIFV 288
+ E E+ ++ LRILSFDIEC G FP+ +DPIIQI+++ QG +
Sbjct: 286 HVEPITLENEYQQIPKLRILSFDIECIKLDGKGFPEAKNDPIIQISSILYFQGEPIDNCT 345
Query: 289 KNVFTLNTCAPIVGSQVICCKTETELLDKWSAFI 322
K +FTL CA I GS VI E LL+ W+ FI
Sbjct: 346 KFIFTLLECASIPGSNVIWFNDEKTLLEAWNEFI 379
Score = 268 (99.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 67/165 (40%), Positives = 87/165 (52%)
Query: 327 QGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFD 386
QG + K +FTL CA I GS VI E LL+ W+ FI +DPD TGYNI NFD
Sbjct: 337 QGEPIDNCTKFIFTLLECASIPGSNVIWFNDEKTLLEAWNEFIIRIDPDFLTGYNIINFD 396
Query: 387 FPYLINRAKHLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGNSD------ 440
PY++NR L +K FLGR+K++ S +KDS SKQ G E K IN G
Sbjct: 397 LPYILNRGTALNLKKLKFLGRIKNVASTVKDSSFSSKQFGTHETKEINIFGRIQFDVYDL 456
Query: 441 -RRE------TLGVKNFTFLGRVK-DIR-SVIKDSFIQSKQMGKR 476
+R+ TL +F FL K D+ S++ D +S + KR
Sbjct: 457 IKRDYKLKSYTLNYVSFEFLKEQKEDVHYSIMNDLQNESPESRKR 501
Score = 248 (92.4 bits), Expect = 9.9e-43, Sum P(2) = 9.9e-43
Identities = 48/91 (52%), Positives = 65/91 (71%)
Query: 440 DRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREY 499
+R L +K FLGR+K++ S +KDS SKQ G E K IN GR+ FD+ ++ R+Y
Sbjct: 402 NRGTALNLKKLKFLGRIKNVASTVKDSSFSSKQFGTHETKEINIFGRIQFDVYDLIKRDY 461
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
KL+SYTLN VS+ FL+EQKEDV +SI++DLQ
Sbjct: 462 KLKSYTLNYVSFEFLKEQKEDVHYSIMNDLQ 492
Score = 39 (18.8 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 21 KEDKIVFQQISIEHYTGEPI 40
K D I+ Q SI ++ GEPI
Sbjct: 323 KNDPII-QISSILYFQGEPI 341
>UNIPROTKB|Q22HL1 [details] [associations]
symbol:TTHERM_00636920 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0007346
GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
ProtClustDB:PTZ00166 EMBL:GG662588 RefSeq:XP_001032353.1
EnsemblProtists:EAR84690 GeneID:7846549 KEGG:tet:TTHERM_00636920
Uniprot:Q22HL1
Length = 1124
Score = 282 (104.3 bits), Expect = 5.1e-40, Sum P(2) = 5.1e-40
Identities = 89/288 (30%), Positives = 145/288 (50%)
Query: 52 PIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEF--NSTHCRAFKEALNRAIIADMRGNK 109
PI+RM+GVT + +SV + G PYL+V P + N+ ++ + LN+ + N
Sbjct: 111 PIIRMYGVTKDQHSVLVSIRGVVPYLFVRLPPQIQPNAQTLKSIMDDLNKQ--GKFQRNV 168
Query: 110 DEIQEAVLMVEIVQKQTVFGFWGEEL--ENFLKITESVFPTFPTHTYKAFESNIDFD-IR 166
+ + +E+V+ +++ + G++ + +LKI + P P E D IR
Sbjct: 169 -KTTNFIRKIEVVKGESIKYYKGKDYAQDTYLKIYTFIPPFIPA-LRGMIEKGYTIDGIR 226
Query: 167 FMV---DNDI-VGCNWI---EIPPGKWQLRGQHKFS-NTNRPCVSRCQLEIDVSTDDIVS 218
F +++I ++ +I W + KF + SRCQ+EIDV ++
Sbjct: 227 FPAVTFESNIPFALRYMIDADIVGMGWIKLDKEKFKIRSLDKHKSRCQIEIDVDCQNV-- 284
Query: 219 HAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPNHD-PIIQIANMC 277
H + A + +W+ +APLRI SFDIEC + G FP+ + D PIIQIA +
Sbjct: 285 HGMD------------AQDPQWADIAPLRIFSFDIECLAKSGGFPNASKDDPIIQIATVL 332
Query: 278 ISQGASENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRTM 325
E+I V+ VFT++TC+ I G V KTETELL +W F++ +
Sbjct: 333 KIHDQQEDI-VRTVFTMDTCSNIPGCIVKSFKTETELLLEWEKFLQNV 379
Score = 277 (102.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 56/109 (51%), Positives = 75/109 (68%)
Query: 331 ENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYL 390
E+I V+ VFT++TC+ I G V KTETELL +W F++ +DPDIF GYNI NFDFPY+
Sbjct: 339 EDI-VRTVFTMDTCSNIPGCIVKSFKTETELLLEWEKFLQNVDPDIFLGYNITNFDFPYI 397
Query: 391 INRAKHLGVKN--FTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEG 437
+ R K L + N + F+GR+K+ + IKD SK MG R+ K +NFEG
Sbjct: 398 LERGKQLKINNGKYGFMGRIKNTITRIKDGKYLSKAMGMRDTKEMNFEG 446
Score = 228 (85.3 bits), Expect = 5.1e-40, Sum P(2) = 5.1e-40
Identities = 48/93 (51%), Positives = 64/93 (68%)
Query: 440 DRRETLGVKN--FTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLR 497
+R + L + N + F+GR+K+ + IKD SK MG R+ K +NFEGR+ D++ + R
Sbjct: 399 ERGKQLKINNGKYGFMGRIKNTITRIKDGKYLSKAMGMRDTKEMNFEGRIQLDMMMHMHR 458
Query: 498 EYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQ 530
E KL SY+LNSVSYHFL EQKEDV H+ IS LQ
Sbjct: 459 ETKLSSYSLNSVSYHFLNEQKEDVHHTQISGLQ 491
>FB|FBgn0002891 [details] [associations]
symbol:mus205 "mutagen-sensitive 205" species:7227
"Drosophila melanogaster" [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS;IBA;NAS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;IDA;NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0019985 "translesion synthesis"
evidence=IBA;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AE013599 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0000724 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
FlyBase:FBgn0002891 EMBL:AF298216 RefSeq:NP_524881.2
UniGene:Dm.10622 SMR:Q9GSR1 MINT:MINT-864058 STRING:Q9GSR1
EnsemblMetazoa:FBtr0088831 GeneID:47186 KEGG:dme:Dmel_CG1925
UCSC:CG1925-RA CTD:47186 InParanoid:Q9GSR1 OMA:IPPLNRC
GenomeRNAi:47186 NextBio:838931 Uniprot:Q9GSR1
Length = 2130
Score = 179 (68.1 bits), Expect = 2.0e-14, Sum P(4) = 2.0e-14
Identities = 56/206 (27%), Positives = 100/206 (48%)
Query: 45 GSQLKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPK-EFNSTHCRAFKEA--LNRAI 101
G ++K VP++R+FG G C HVHG PYLY+ K +F S + A L++AI
Sbjct: 39 GKEIKRVPVIRVFGGNSRGQKTCMHVHGVFPYLYIPYDKKDFESLERGILQMAMHLDKAI 98
Query: 102 IADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKITESVF-PTFP---------- 150
+ Q V +++V+ +G+ E FLKI +F P F
Sbjct: 99 NISLGQGSSNAQH-VFKIQLVKGIPFYGYHRVE-HQFLKIY--MFNPRFVRRAANLLQSG 154
Query: 151 ---THTYKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSNTNRPCVSRCQL 207
+ + ES++ + ++FM+D ++ G +++ +P + R H V + QL
Sbjct: 155 AILSKNFSPHESHVPYILQFMIDYNLYGMSYVHVPLEVLKFRRNHDDDVIPYANVKQAQL 214
Query: 208 EIDVSTDDIVSHAPEEIDVSTDDIVS 233
+D++T V+ + E+DVS++ I++
Sbjct: 215 -LDITTAKKVACSALEVDVSSNFILN 239
Score = 82 (33.9 bits), Expect = 2.0e-14, Sum P(4) = 2.0e-14
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 357 TETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRV 408
+E E + A D DI+ GY I+ + Y+I+RAKHL L RV
Sbjct: 1376 SEAEAFEALLALCERWDADIYAGYEIEMSSWGYVIDRAKHLCFNIAPLLSRV 1427
Score = 62 (26.9 bits), Expect = 2.0e-14, Sum P(4) = 2.0e-14
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 485 GRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQ 517
GR+ D+ ++ E L SYT +V YH L ++
Sbjct: 1454 GRILLDVWRLMRSEIALTSYTFENVMYHILHKR 1486
Score = 46 (21.3 bits), Expect = 2.0e-14, Sum P(4) = 2.0e-14
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 246 LRILSFDIECAGRKGIFPDPNHDPI 270
L I++ ++ + R + PDP HD I
Sbjct: 1300 LTIITLEVFVSTRGDLQPDPMHDEI 1324
Score = 37 (18.1 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 370 RELDPDIFTGYNIQNFDFPYLINRAKHLG 398
+ L P + YN + F + R +HLG
Sbjct: 1608 QSLYPSMIIAYN---YCFSTCLGRVEHLG 1633
>MGI|MGI:1337131 [details] [associations]
symbol:Rev3l "REV3-like, catalytic subunit of DNA polymerase
zeta RAD54 like (S. cerevisiae)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO;IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AF083464 MGI:MGI:1337131
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
HOGENOM:HOG000112263 HOVERGEN:HBG000426 KO:K02350 OMA:DGTADEN
ChiTaRS:REV3L GO:GO:0016035 EMBL:AB031049 EMBL:AC118733
EMBL:AC119943 EMBL:D78644 IPI:IPI00378205 PIR:T17202
RefSeq:NP_035394.2 UniGene:Mm.439723 PDB:4FJO PDBsum:4FJO
ProteinModelPortal:Q61493 SMR:Q61493 STRING:Q61493
PhosphoSite:Q61493 PaxDb:Q61493 PRIDE:Q61493
Ensembl:ENSMUST00000019986 Ensembl:ENSMUST00000164763 GeneID:19714
KEGG:mmu:19714 UCSC:uc007ewc.1 GeneTree:ENSGT00550000074640
InParanoid:Q61493 NextBio:297104 Bgee:Q61493 Genevestigator:Q61493
GermOnline:ENSMUSG00000019841 Uniprot:Q61493
Length = 3122
Score = 158 (60.7 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 49/183 (26%), Positives = 85/183 (46%)
Query: 30 ISIEHYTGEPIPGM-----PGSQL--KPVPIVRMFGVTMEGNSVCCHVHGFSPYLYV--- 79
++ ++Y P+PG+ P +QL K VP+VR+FG T G C H+HG PYLYV
Sbjct: 7 VTADYYMASPLPGLDTCQSPLTQLPVKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPYD 66
Query: 80 ---SAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELE 136
P+ + S + ALN A+ GN + V V +V +G+ +E
Sbjct: 67 GYGQQPESYLSQMAFSIDRALNVAL-----GNPSSTAQHVFKVSLVSGMPFYGYHEKE-R 120
Query: 137 NFLKI-------TESVFPTFPTHT-----YKAFESNIDFDIRFMVDNDIVGCNWIEIPPG 184
+F+KI + + + Y+ E++I + ++ +D ++ G N I +
Sbjct: 121 HFMKIYLYNPAMVKRICELLQSGAIMNKCYQPHEAHIPYLLQLFIDYNLYGMNLINLAAV 180
Query: 185 KWQ 187
K++
Sbjct: 181 KFR 183
Score = 101 (40.6 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 35/113 (30%), Positives = 49/113 (43%)
Query: 347 IVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLG 406
I G +V E L + + I+ DPDI GY IQ + YL+ RA L V +
Sbjct: 2363 ITGLEVTYAADEKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMIS 2422
Query: 407 RVKDIRSVIKDSFIQSKQ-MGKRENKTINFEG----NSDR--RETLGVKNFTF 452
RV D + I++ F + G IN G N R R + + N+TF
Sbjct: 2423 RVPDDK--IENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTF 2473
Score = 81 (33.6 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQ-MGKRENKTINFEGRVCFDLLFVLLREY 499
R L V + RV D + I++ F + G IN GR+ +L ++ E
Sbjct: 2409 RAAALSVDLCQMISRVPDDK--IENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEV 2466
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISD 528
L +YT +VS+H L ++ ++SD
Sbjct: 2467 ALTNYTFENVSFHVLHQRFPLFTFRVLSD 2495
Score = 58 (25.5 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 242 KVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCIS 279
++ L ++S ++ R+ + PDP DPI + CIS
Sbjct: 2285 EIQNLTLISVELHARTRRDLQPDPEFDPICALF-YCIS 2321
Score = 43 (20.2 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 202 VSRCQLEIDVSTDDIVSHAPEEIDV 226
+S C+LE+D DI++ E +
Sbjct: 231 LSTCELEVDAVAADILNRLDIEAQI 255
>UNIPROTKB|E1BPY8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9913 "Bos taurus"
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:DAAA02025892 EMBL:DAAA02025893
EMBL:DAAA02025894 EMBL:DAAA02025895 IPI:IPI00923965
Ensembl:ENSBTAT00000060948 Uniprot:E1BPY8
Length = 3133
Score = 157 (60.3 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 52/201 (25%), Positives = 91/201 (45%)
Query: 30 ISIEHYTGEPIPGM-----PGSQ--LKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYV--- 79
++ ++Y P+ G+ P +Q +K VP+VR+FG T G C H+HG PYLYV
Sbjct: 7 VTADYYMASPLQGLDICQSPLTQAPVKKVPVVRIFGATPAGQKTCLHLHGIFPYLYVPYD 66
Query: 80 ---SAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELE 136
P+ + S + ALN A+ GN + V V +V +G+ +E
Sbjct: 67 GYGQQPESYLSQMAFSIDRALNVAL-----GNPSSTAQHVFKVSVVSGMPFYGYHEKE-R 120
Query: 137 NFLKI-------TESVFPTFPTHT-----YKAFESNIDFDIRFMVDNDIVGCNWIEIPPG 184
+F+KI + + + Y+ E++I + ++ +D ++ G N I +
Sbjct: 121 HFMKIYLYNPAMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAV 180
Query: 185 KWQ-LRGQHKFSNTNRPCVSR 204
K++ R + K + T C R
Sbjct: 181 KFRKARRKSKVNFTTGSCKDR 201
Score = 103 (41.3 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 35/113 (30%), Positives = 50/113 (44%)
Query: 347 IVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLG 406
I G QV E L + + I+ DPDI GY IQ + YL+ RA L V +
Sbjct: 2374 ITGLQVTYAADEKTLFQEIANIIKRYDPDILIGYEIQMHSWGYLLQRAAALSVDLCQMIS 2433
Query: 407 RVKDIRSVIKDSFIQSK-QMGKRENKTINFEG----NSDR--RETLGVKNFTF 452
RV D ++ ++ F + + G IN G N R R + + N+TF
Sbjct: 2434 RVPDDKT--ENRFAAERDEYGSDVMSEINIVGRITLNLWRIMRNEVALNNYTF 2484
Score = 80 (33.2 bits), Expect = 2.2e-10, Sum P(4) = 2.2e-10
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSK-QMGKRENKTINFEGRVCFDLLFVLLREY 499
R L V + RV D ++ ++ F + + G IN GR+ +L ++ E
Sbjct: 2420 RAAALSVDLCQMISRVPDDKT--ENRFAAERDEYGSDVMSEINIVGRITLNLWRIMRNEV 2477
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISD 528
L +YT +VS+H L ++ ++SD
Sbjct: 2478 ALNNYTFENVSFHVLHQRFPLFTFRVLSD 2506
Score = 58 (25.5 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 242 KVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCIS 279
++ L ++S ++ R+ + PDP DPI + CIS
Sbjct: 2296 EIQNLTLISVELHARTRRDLEPDPEFDPICALF-YCIS 2332
Score = 42 (19.8 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 203 SRCQLEIDVSTDDIVSHAPEEIDV 226
S C+LE+D DI++ E +
Sbjct: 233 STCELEVDAVAADILNRLDIEAQI 256
>UNIPROTKB|Q8TSB3 [details] [associations]
symbol:MA_0885 "DNA polymerase" species:188937
"Methanosarcina acetivorans C2A" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 EMBL:AE010299
GenomeReviews:AE010299_GR eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 OMA:RSFRPYF HSSP:Q56366
KO:K02319 RefSeq:NP_615844.1 ProteinModelPortal:Q8TSB3
GeneID:1472777 KEGG:mac:MA0885 ProtClustDB:CLSK568782
BioCyc:MACE188937:GI2O-954-MONOMER Uniprot:Q8TSB3
Length = 937
Score = 133 (51.9 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 58/203 (28%), Positives = 87/203 (42%)
Query: 336 KNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAK 395
K + L A + V+ C ETE+L+K+ I E DPDI GYN Q+FD PY+ R K
Sbjct: 231 KTLILLAKPAAGMDGDVLSCMDETEMLNKFFEIICEYDPDIVAGYNHQDFDIPYITERVK 290
Query: 396 HLGVKNFTF---LGRVKDIRSVIKDSFIQSKQMGKR---ENKTINFEGNSDRRETLGVKN 449
L K T +GR K I +M R + + S ++ TL +
Sbjct: 291 ALVAKGETINSVVGRDGSPIGYRKFGLITRTEMKGRVVVDALPLVRRAFSLKQYTLRAVS 350
Query: 450 FTFLGRVK-DIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKL--RSYTL 506
L R K D+ + + G + K +++ R +L L+ E +L + L
Sbjct: 351 KELLSREKLDVPPLEMEEHWNDS--GDKFRKFVDYARRDS-ELALELVLELRLLDKYIAL 407
Query: 507 NSVSYHFLQEQKEDVQHSIISDL 529
VS LQE + Q S++ L
Sbjct: 408 AQVSGSLLQEIVDGGQTSMVETL 430
Score = 116 (45.9 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 32/129 (24%), Positives = 61/129 (47%)
Query: 52 PIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKDE 111
P++R+FG +G SVCC V F PY Y+ A + ++ R K+ + ++ +
Sbjct: 20 PVIRLFGRGADGKSVCCFVPDFEPYFYLKASGDLHAV-ARLIKDTFEQVKKVEIVEKFEP 78
Query: 112 IQEAVLMVEIVQKQTVFGFWGEEL-ENFLKITESVFPTFPTHTYKAFESNIDFDIRFMVD 170
+ E+++ T E+ + LKI + + ++ +ES+I F RF++D
Sbjct: 79 VGYQKTKKEMLRVTTRLPKDVPEIRDEILKIRDVLRAE---GDWQVYESDILFRNRFLID 135
Query: 171 NDIVGCNWI 179
+ G W+
Sbjct: 136 RALGGMVWV 144
Score = 98 (39.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 243 VAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENIFVKNVFTLNTCAPIVG 302
+APL+ L+FDIEC G P P+ PII I+ + K + L A +
Sbjct: 189 IAPLKYLAFDIECLPLDGGMPSPDVSPIIMISFSFEPEYKGH----KTLILLAKPAAGMD 244
Query: 303 SQVICCKTETELLDKWSAFI 322
V+ C ETE+L+K+ I
Sbjct: 245 GDVLSCMDETEMLNKFFEII 264
>UNIPROTKB|F1LMP6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 IPI:IPI00361212
Ensembl:ENSRNOT00000000725 ArrayExpress:F1LMP6 Uniprot:F1LMP6
Length = 3118
Score = 155 (59.6 bits), Expect = 5.8e-12, Sum P(4) = 5.8e-12
Identities = 48/183 (26%), Positives = 85/183 (46%)
Query: 30 ISIEHYTGEPIPGM-----PGSQ--LKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYV--- 79
++ ++Y P+PG+ P +Q +K VP+VR+FG T G C H+HG PYLYV
Sbjct: 7 VTADYYMASPLPGLDICQSPLTQHPVKKVPVVRVFGATPAGQKTCLHLHGVFPYLYVPYD 66
Query: 80 ---SAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELE 136
P+ + S + ALN A+ GN + V V +V +G+ +E
Sbjct: 67 GYGQQPERYLSQMALSIDRALNVAL-----GNPSSTAQHVFKVSLVSGMPFYGYHEKE-R 120
Query: 137 NFLKI-------TESVFPTFPTHT-----YKAFESNIDFDIRFMVDNDIVGCNWIEIPPG 184
+F+KI + + + Y+ E++I + ++ +D ++ G N I +
Sbjct: 121 HFMKIYLYNPAMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAV 180
Query: 185 KWQ 187
K++
Sbjct: 181 KFR 183
Score = 97 (39.2 bits), Expect = 5.8e-12, Sum P(4) = 5.8e-12
Identities = 33/113 (29%), Positives = 49/113 (43%)
Query: 347 IVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLG 406
+ G +V E L + + ++ DPDI GY IQ + YL+ RA L V +
Sbjct: 2359 VTGLEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMIS 2418
Query: 407 RVKDIRSVIKDSFIQSKQ-MGKRENKTINFEG----NSDR--RETLGVKNFTF 452
RV D + I++ F + G IN G N R R + + N+TF
Sbjct: 2419 RVPDDK--IENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTF 2469
Score = 81 (33.6 bits), Expect = 2.2e-10, Sum P(4) = 2.2e-10
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQ-MGKRENKTINFEGRVCFDLLFVLLREY 499
R L V + RV D + I++ F + G IN GR+ +L ++ E
Sbjct: 2405 RAAALSVDLCQMISRVPDDK--IENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEV 2462
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISD 528
L +YT +VS+H L ++ ++SD
Sbjct: 2463 ALTNYTFENVSFHVLHQRFPLFTFRVLSD 2491
Score = 58 (25.5 bits), Expect = 5.8e-12, Sum P(4) = 5.8e-12
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 242 KVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCIS 279
++ L ++S ++ R+ + PDP DPI + CIS
Sbjct: 2281 EIQNLTLISVELHARTRRDLQPDPEFDPICALF-YCIS 2317
Score = 43 (20.2 bits), Expect = 5.8e-12, Sum P(4) = 5.8e-12
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 202 VSRCQLEIDVSTDDIVSHAPEEIDV 226
+S C+LE+D DI++ E +
Sbjct: 231 LSTCELEVDAVAADILNRLDIEAQI 255
>UNIPROTKB|F1M8G6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
IPI:IPI00778278 RefSeq:NP_001077435.1 UniGene:Rn.8189
Ensembl:ENSRNOT00000057227 GeneID:309812 KEGG:rno:309812
NextBio:661358 ArrayExpress:F1M8G6 Uniprot:F1M8G6
Length = 3132
Score = 155 (59.6 bits), Expect = 5.9e-12, Sum P(4) = 5.9e-12
Identities = 48/183 (26%), Positives = 85/183 (46%)
Query: 30 ISIEHYTGEPIPGM-----PGSQ--LKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYV--- 79
++ ++Y P+PG+ P +Q +K VP+VR+FG T G C H+HG PYLYV
Sbjct: 7 VTADYYMASPLPGLDICQSPLTQHPVKKVPVVRVFGATPAGQKTCLHLHGVFPYLYVPYD 66
Query: 80 ---SAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELE 136
P+ + S + ALN A+ GN + V V +V +G+ +E
Sbjct: 67 GYGQQPERYLSQMALSIDRALNVAL-----GNPSSTAQHVFKVSLVSGMPFYGYHEKE-R 120
Query: 137 NFLKI-------TESVFPTFPTHT-----YKAFESNIDFDIRFMVDNDIVGCNWIEIPPG 184
+F+KI + + + Y+ E++I + ++ +D ++ G N I +
Sbjct: 121 HFMKIYLYNPAMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAV 180
Query: 185 KWQ 187
K++
Sbjct: 181 KFR 183
Score = 97 (39.2 bits), Expect = 5.9e-12, Sum P(4) = 5.9e-12
Identities = 33/113 (29%), Positives = 49/113 (43%)
Query: 347 IVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLG 406
+ G +V E L + + ++ DPDI GY IQ + YL+ RA L V +
Sbjct: 2373 VTGLEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMIS 2432
Query: 407 RVKDIRSVIKDSFIQSKQ-MGKRENKTINFEG----NSDR--RETLGVKNFTF 452
RV D + I++ F + G IN G N R R + + N+TF
Sbjct: 2433 RVPDDK--IENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTF 2483
Score = 81 (33.6 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQ-MGKRENKTINFEGRVCFDLLFVLLREY 499
R L V + RV D + I++ F + G IN GR+ +L ++ E
Sbjct: 2419 RAAALSVDLCQMISRVPDDK--IENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEV 2476
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISD 528
L +YT +VS+H L ++ ++SD
Sbjct: 2477 ALTNYTFENVSFHVLHQRFPLFTFRVLSD 2505
Score = 58 (25.5 bits), Expect = 5.9e-12, Sum P(4) = 5.9e-12
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 242 KVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCIS 279
++ L ++S ++ R+ + PDP DPI + CIS
Sbjct: 2295 EIQNLTLISVELHARTRRDLQPDPEFDPICALF-YCIS 2331
Score = 43 (20.2 bits), Expect = 5.9e-12, Sum P(4) = 5.9e-12
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 202 VSRCQLEIDVSTDDIVSHAPEEIDV 226
+S C+LE+D DI++ E +
Sbjct: 231 LSTCELEVDAVAADILNRLDIEAQI 255
>UNIPROTKB|O60673 [details] [associations]
symbol:REV3L "DNA polymerase zeta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006261 "DNA-dependent DNA
replication" evidence=TAS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0051539 GO:GO:0006261
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 EMBL:AF058701 EMBL:AF071798 EMBL:AF157476
EMBL:AF179428 EMBL:AF179429 EMBL:AF078695 EMBL:AY684169
EMBL:AL080317 EMBL:AL136310 EMBL:AL512325 EMBL:AF035537
IPI:IPI00248651 IPI:IPI00745230 RefSeq:NP_002903.3
UniGene:Hs.232021 PDB:3ABD PDB:3ABE PDB:3VU7 PDBsum:3ABD
PDBsum:3ABE PDBsum:3VU7 ProteinModelPortal:O60673 SMR:O60673
IntAct:O60673 STRING:O60673 PhosphoSite:O60673 PaxDb:O60673
PRIDE:O60673 Ensembl:ENST00000358835 Ensembl:ENST00000368802
Ensembl:ENST00000368805 Ensembl:ENST00000435970 GeneID:5980
KEGG:hsa:5980 UCSC:uc003pux.4 CTD:5980 GeneCards:GC06M111665
H-InvDB:HIX0017582 HGNC:HGNC:9968 MIM:602776 neXtProt:NX_O60673
PharmGKB:PA34337 HOGENOM:HOG000112263 HOVERGEN:HBG000426
InParanoid:O60673 KO:K02350 OMA:DGTADEN OrthoDB:EOG4NVZJD
PhylomeDB:O60673 ChiTaRS:REV3L EvolutionaryTrace:O60673
GenomeRNAi:5980 NextBio:23277 ArrayExpress:O60673 Bgee:O60673
CleanEx:HS_REV3L Genevestigator:O60673 GermOnline:ENSG00000009413
GO:GO:0016035 Uniprot:O60673
Length = 3130
Score = 152 (58.6 bits), Expect = 6.1e-12, Sum P(4) = 6.1e-12
Identities = 51/193 (26%), Positives = 90/193 (46%)
Query: 30 ISIEHYTGEPIPGM-----PGSQ--LKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYV--- 79
++ ++Y P+ G+ P +Q +K VP+VR+FG T G C H+HG PYLYV
Sbjct: 7 VTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPYD 66
Query: 80 ---SAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELE 136
P+ + S + ALN A+ GN + V V +V +G+ +E
Sbjct: 67 GYGQQPESYLSQMAFSIDRALNVAL-----GNPSSTAQHVFKVSLVSGMPFYGYHEKE-R 120
Query: 137 NFLKI-------TESVFPTFPTHT-----YKAFESNIDFDIRFMVDNDIVGCNWIEIPPG 184
+F+KI + + + Y+ E++I + ++ +D ++ G N I +
Sbjct: 121 HFMKIYLYNPTMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAV 180
Query: 185 KWQLRGQHKFSNT 197
K++ + + K SNT
Sbjct: 181 KFR-KARRK-SNT 191
Score = 101 (40.6 bits), Expect = 6.1e-12, Sum P(4) = 6.1e-12
Identities = 34/113 (30%), Positives = 50/113 (44%)
Query: 347 IVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLG 406
I G +V E L + + I+ DPDI GY IQ + YL+ RA L + +
Sbjct: 2371 ITGLEVTYAADEKALFHEIANIIKRYDPDILLGYEIQMHSWGYLLQRAAALSIDLCRMIS 2430
Query: 407 RVKDIRSVIKDSFIQSK-QMGKRENKTINFEG----NSDR--RETLGVKNFTF 452
RV D + I++ F + + G IN G N R R + + N+TF
Sbjct: 2431 RVPDDK--IENRFAAERDEYGSYTMSEINIVGRITLNLWRIMRNEVALTNYTF 2481
Score = 82 (33.9 bits), Expect = 4.7e-10, Sum P(4) = 4.7e-10
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSK-QMGKRENKTINFEGRVCFDLLFVLLREY 499
R L + + RV D + I++ F + + G IN GR+ +L ++ E
Sbjct: 2417 RAAALSIDLCRMISRVPDDK--IENRFAAERDEYGSYTMSEINIVGRITLNLWRIMRNEV 2474
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISD 528
L +YT +VS+H L ++ ++SD
Sbjct: 2475 ALTNYTFENVSFHVLHQRFPLFTFRVLSD 2503
Score = 58 (25.5 bits), Expect = 6.1e-12, Sum P(4) = 6.1e-12
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 242 KVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCIS 279
++ L ++S ++ R+ + PDP DPI + CIS
Sbjct: 2293 EIQNLTLISVELHARTRRDLEPDPEFDPICALF-YCIS 2329
Score = 42 (19.8 bits), Expect = 6.1e-12, Sum P(4) = 6.1e-12
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 203 SRCQLEIDVSTDDIVSHAPEEIDV 226
S C+LE+D DI++ E +
Sbjct: 232 STCELEVDAVAADILNRLDIEAQI 255
>UNIPROTKB|F1P7D5 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 CTD:5980 KO:K02350 OMA:DGTADEN GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
RefSeq:XP_539084.3 Ensembl:ENSCAFT00000006350 GeneID:481963
KEGG:cfa:481963 Uniprot:F1P7D5
Length = 3136
Score = 150 (57.9 bits), Expect = 8.1e-12, Sum P(4) = 8.1e-12
Identities = 51/201 (25%), Positives = 91/201 (45%)
Query: 30 ISIEHYTGEPIPGM-----PGSQ--LKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYV--- 79
++ ++Y P+ G+ P +Q +K VP+VR+FG T G C H+HG PYLYV
Sbjct: 7 VTADYYMASPLRGLDTCLCPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPYD 66
Query: 80 ---SAPKEFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELE 136
P+ + S + ALN A+ GN + V V +V +G+ +E +
Sbjct: 67 GYGQQPESYLSQMAFSIDRALNVAL-----GNPSSTAQHVFKVSLVSGMPFYGYHEKE-K 120
Query: 137 NFLKI-------TESVFPTFPTHT-----YKAFESNIDFDIRFMVDNDIVGCNWIEIPPG 184
+F+KI + + + Y+ E++I + ++ +D ++ G N I +
Sbjct: 121 HFMKIYLYNPAMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAV 180
Query: 185 KWQ-LRGQHKFSNTNRPCVSR 204
K++ R + +T C R
Sbjct: 181 KFRKARRKSNQLHTTGSCKDR 201
Score = 102 (41.0 bits), Expect = 8.1e-12, Sum P(4) = 8.1e-12
Identities = 35/113 (30%), Positives = 49/113 (43%)
Query: 347 IVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLG 406
I G +V E L + + I+ DPDI GY IQ + YL+ RA L V +
Sbjct: 2377 ITGLEVTYAPDEKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLGQMIS 2436
Query: 407 RVKDIRSVIKDSFIQSKQ-MGKRENKTINFEG----NSDR--RETLGVKNFTF 452
RV D + I++ F + G IN G N R R + + N+TF
Sbjct: 2437 RVPDDK--IENRFAPERDDYGSETMSEINIVGRITLNLWRIMRNEVALTNYTF 2487
Score = 82 (33.9 bits), Expect = 7.7e-10, Sum P(4) = 7.7e-10
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQ-MGKRENKTINFEGRVCFDLLFVLLREY 499
R L V + RV D + I++ F + G IN GR+ +L ++ E
Sbjct: 2423 RAAALSVDLGQMISRVPDDK--IENRFAPERDDYGSETMSEINIVGRITLNLWRIMRNEV 2480
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISD 528
L +YT +VS+H L ++ ++SD
Sbjct: 2481 ALTNYTFENVSFHVLHQRFPLFTFRVLSD 2509
Score = 58 (25.5 bits), Expect = 8.1e-12, Sum P(4) = 8.1e-12
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 242 KVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCIS 279
++ L ++S ++ R+ + PDP DPI + CIS
Sbjct: 2299 EIQNLTLISVELHARTRRDLEPDPEFDPICALF-YCIS 2335
Score = 42 (19.8 bits), Expect = 8.1e-12, Sum P(4) = 8.1e-12
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 203 SRCQLEIDVSTDDIVSHAPEEIDV 226
S C+LE+D DI++ E +
Sbjct: 232 STCELEVDAVAADILNRLDIEAQI 255
>ZFIN|ZDB-GENE-050302-55 [details] [associations]
symbol:rev3l "REV3-like, catalytic subunit of DNA
polymerase zeta (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 ZFIN:ZDB-GENE-050302-55 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:CABZ01061477 EMBL:CABZ01061476
EMBL:CU570797 IPI:IPI00996886 Ensembl:ENSDART00000092264
ArrayExpress:E7FDC5 Bgee:E7FDC5 Uniprot:E7FDC5
Length = 2953
Score = 135 (52.6 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 44/158 (27%), Positives = 76/158 (48%)
Query: 46 SQLKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKE-FNSTHCRAFKE---ALNRAI 101
S +K VP+VR+FG T G C H+HG PY+YV P + F R ++ +++RA+
Sbjct: 30 SDVKKVPVVRIFGATPAGQKTCLHLHGIFPYIYV--PYDGFGQEADRYLRQVAYSIDRAL 87
Query: 102 IADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKI-------TESVFPTFPTHTY 154
M GN + + V +V +G+ E ++F+KI + V
Sbjct: 88 NISM-GNPSSNVQHIFKVVLVTGMPFYGYHMRE-KSFMKIFLYNPQMVKRVSELLQAGAV 145
Query: 155 --KAF---ESNIDFDIRFMVDNDIVGCNWIEIPPGKWQ 187
K+F E++I F ++ +D ++ G N I + K++
Sbjct: 146 MNKSFQPHEAHIPFLLQLFIDYNLYGMNMISLAAVKFR 183
Score = 104 (41.7 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 347 IVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLG 406
+ G V E EL ++ S IR+ DPDI GY +Q + YL+ RA LGV L
Sbjct: 2192 VTGLPVTYTCDEKELFEEVSNIIRKYDPDILVGYEVQMHSWGYLLQRASTLGVNLCQQLS 2251
Query: 407 RV 408
RV
Sbjct: 2252 RV 2253
Score = 87 (35.7 bits), Expect = 4.7e-09, Sum P(4) = 4.7e-09
Identities = 26/89 (29%), Positives = 41/89 (46%)
Query: 441 RRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKT-INFEGRVCFDLLFVLLREY 499
R TLGV L RV ++ FI K E T I+ GR+ ++ ++ E
Sbjct: 2238 RASTLGVNLCQQLSRVPGDSQ--QNHFIPEKDEYGAETMTEIHITGRIILNIWRIMKTEA 2295
Query: 500 KLRSYTLNSVSYHFLQEQKEDVQHSIISD 528
L +YT +V++H L ++ H +SD
Sbjct: 2296 ALNNYTFENVAFHLLHQRYPLYSHRTLSD 2324
Score = 59 (25.8 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 242 KVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCIS 279
+V L ++S ++ R+ + PDP DPI + C+S
Sbjct: 2114 EVQHLTLMSMELHARTRRNLEPDPEFDPICALF-YCLS 2150
Score = 43 (20.2 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 195 SNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVST 228
S+ + P +C +ID + D ++ P ++ST
Sbjct: 1921 SSDSSPSSVKCVQDIDKTKDCRITSPPNSPEIST 1954
Score = 42 (19.8 bits), Expect = 7.5e-09, Sum P(4) = 7.5e-09
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 307 CCKTET----ELLDKWSAFIRTMGQGASENIFVKNVFTL 341
CC E EL D + I +GQ +++ N F L
Sbjct: 1512 CCSVEDSLSPELPDNYRFDINVIGQTEFSSLYSGNQFVL 1550
Score = 41 (19.5 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 202 VSRCQLEIDVSTDDIVS 218
VS C+LE+D D+++
Sbjct: 240 VSVCELEVDAVAADVLN 256
>UNIPROTKB|Q233J3 [details] [associations]
symbol:TTHERM_00391570 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR001440 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR011990 InterPro:IPR012337
InterPro:IPR013026 InterPro:IPR017964 InterPro:IPR019734
Pfam:PF00136 Pfam:PF00515 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 Gene3D:1.25.40.10 InterPro:IPR006597
SMART:SM00671 SUPFAM:SSF53098 InterPro:IPR013105 Pfam:PF07719
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:GG662770 RefSeq:XP_001011832.1 ProteinModelPortal:Q233J3
EnsemblProtists:EAR91587 GeneID:7847176 KEGG:tet:TTHERM_00391570
ProtClustDB:CLSZ2498360 Uniprot:Q233J3
Length = 2315
Score = 116 (45.9 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 46/169 (27%), Positives = 82/169 (48%)
Query: 352 VICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRV-KD 410
+I K E ELL + I + DI TG++I+ Y +R LG+ L R K+
Sbjct: 932 IIVTKNEEELLLTFIKQIHIFNVDIITGWDIEKKSLFYFSHRCWQLGIDVMDILSRCPKN 991
Query: 411 IRSVIKDSFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQS 470
++++ +F + + + + + + +G S + + N +F + ++S IK S +
Sbjct: 992 SFNILR-AFKLADCLIEEQFQNDSAKGYSQQSMSFD-SNQSFKLQNVAMQS-IKQSHRSA 1048
Query: 471 KQMGKRENKTINFE--GRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQ 517
KQ G N +NFE GR+ + ++ +YKL Y L SV + QE+
Sbjct: 1049 KQTGFFANFKLNFEIAGRMIINTWRLVKHDYKLFCYELESVVNYVFQER 1097
Score = 106 (42.4 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 32/121 (26%), Positives = 52/121 (42%)
Query: 52 PIVRMFGVTMEGNSVCCHVHGFSPYLY-VSAPKEFNSTHCRAFKEALNRAIIADMRGNKD 110
P+ RM+G +GNSVC H+HG + + + K F +E + K
Sbjct: 89 PVARMYGNDKQGNSVCLHIHGVNQISHLIQNDKTFLDKFIDLIEECYYTLYSVSEKQKKF 148
Query: 111 EIQEA--VLMVEIVQKQTVFGFWGEELENFLKITESVFPTFPTHTYKAFESNIDFDIRFM 168
+ +L EI+ K+ ++G+ E E FLKI P ES + +I F+
Sbjct: 149 LMSTTPIILNYEIIYKKDIYGYHSTE-EPFLKIY-FYNPKMIKKLVGILESGVVMNIEFV 206
Query: 169 V 169
+
Sbjct: 207 I 207
Score = 59 (25.8 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 185 KWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSK 242
K+ L ++KF++ + VS C +EIDV +I+++ + + S ++ + + E +K
Sbjct: 256 KYYLNSKNKFNSMTK--VSTCDVEIDVYYKNILNYIFLQEEKSEENFIEMCSDLELAK 311
Score = 45 (20.9 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 246 LRILSFDIECAGRKGIFPDPNHDPI 270
+ + +F+I + PDP+ DPI
Sbjct: 863 ITMYTFEIFAKSTPDMLPDPSSDPI 887
>POMBASE|SPAC688.10 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit Rev3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0016035 "zeta DNA
polymerase complex" evidence=ISO] [GO:0042276 "error-prone
translesion synthesis" evidence=ISO] [GO:0043504 "mitochondrial DNA
repair" evidence=IC] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=ISO]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 PomBase:SPAC688.10
GO:GO:0005829 GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0043596 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0070987 GO:GO:0043504 GO:GO:0042276 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 RefSeq:NP_594068.1 HSSP:P21189
ProteinModelPortal:Q9P6L6 STRING:Q9P6L6 EnsemblFungi:SPAC688.10.1
GeneID:2543358 KEGG:spo:SPAC688.10 HOGENOM:HOG000194392 OMA:RVPYLII
OrthoDB:EOG4FN7RT NextBio:20804373 Uniprot:Q9P6L6
Length = 1480
Score = 127 (49.8 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 33/113 (29%), Positives = 57/113 (50%)
Query: 35 YTGEPIPGMPGSQLKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYV--SAPKEFNSTHCRA 92
+ G+ +P +L VP++R+FG+ E +VCC +H PY+YV S+ E
Sbjct: 21 FVGKDLP-TANEELTTVPVIRVFGLNEEAETVCCFIHNVFPYIYVEYSSFAETLDLEVPD 79
Query: 93 F----KEALNRAIIADMRGNKDEIQEAVLMVEIVQKQTVFGFWGEELENFLKI 141
F + ++N A+ R N + + AV V++V+ +G+ + FLKI
Sbjct: 80 FLSQLQTSINYALALAARANPETYKPAVQSVQLVKGIPFYGY-SFCFQKFLKI 131
Score = 89 (36.4 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 352 VICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDI 411
V+ +E EL+++ R+LDP I GY + N + YLI RA + N+ ++ +
Sbjct: 717 VLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASYRF--NYDLPEQLSRL 774
Query: 412 RSVIKDSFIQSKQMGK-RENKTINFEG 437
+ K +F + + K +IN G
Sbjct: 775 KCTSKANFAKKENAWKYTTTSSINIVG 801
Score = 58 (25.5 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 207 LEIDVSTDDIVSHAPEEIDVSTDDIVSHAPEGEWSKVAPLRILSFDIECAGRKGIFPDPN 266
L +D+S + EEI + +S + + +RIL+ ++ C G+ PDP
Sbjct: 614 LAVDLSNLESKEAVSEEIQ--SPQRLSRSKVFRKDPYSCVRILALELFCCSHGGLTPDPT 671
Query: 267 HDPI 270
D I
Sbjct: 672 KDSI 675
Score = 52 (23.4 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 449 NFTFLGRVKDIRSVIKDSFIQSKQMGK-RENKTINFEGRVCFDLLFVLLREYKLRSYTLN 507
N+ ++ ++ K +F + + K +IN GR ++ +L E L +Y+L
Sbjct: 764 NYDLPEQLSRLKCTSKANFAKKENAWKYTTTSSINIVGRHVLNIWRILRGEVNLLNYSLE 823
Query: 508 SVSYHFLQEQ 517
+V + ++Q
Sbjct: 824 NVVLNIFKKQ 833
>ASPGD|ASPL0000070569 [details] [associations]
symbol:uvsI species:162425 "Emericella nidulans"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISA] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=ISA;IMP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0070987 "error-free
translesion synthesis" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0003887
EMBL:AACD01000081 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 HOGENOM:HOG000194392
RefSeq:XP_662393.1 ProteinModelPortal:G5EB69
EnsemblFungi:CADANIAT00005633 GeneID:2872590 KEGG:ani:AN4789.2
OMA:INIWRAM Uniprot:G5EB69
Length = 1681
Score = 124 (48.7 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 48/183 (26%), Positives = 82/183 (44%)
Query: 32 IEHYTGEPI---PGMP---GSQLK---P-VPIVRMFGVTMEGNSVCCHVHGFSPYLYVS- 80
++HY P P +P G+ K P VP++R+FG T G +C HVHG PYLYV
Sbjct: 11 VDHYQANPSEFDPPLPYRDGNNEKGYMPKVPVIRIFGTTETGQKICVHVHGAFPYLYVQY 70
Query: 81 ----APKEFNSTHCRAFKEALNRAIIADMRGNK-DEIQEAVLMVEIVQKQTVFG------ 129
+P S R+ +++ A+ R N D+ V + +V+ +G
Sbjct: 71 DGDLSPDSVRSA-ARSLHLSIDHALAVSYRRNAHDKKTVFVAHITLVKGVPFYGYHVGYR 129
Query: 130 -FWGEELENFLKITESVFPTFPTHTYKA----FESNIDFDIRFMVDNDIVGCNWIEIPPG 184
F+ L N + IT K +ES++ + ++M D ++ GC +++
Sbjct: 130 FFFKIYLLNPIYITRLADLLLQGAVMKRPIQPYESHLQYVPQWMCDYNLFGCAFMKCGKA 189
Query: 185 KWQ 187
K++
Sbjct: 190 KFR 192
Score = 83 (34.3 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 357 TETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAK 395
TE +L+++ +R DPDI TGY + N + ++I RA+
Sbjct: 915 TELDLINRLVDIVRLHDPDIITGYEVHNSSWGFIIERAR 953
Score = 57 (25.1 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 469 QSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISD 528
++ + G +I GR ++ + E L YT+ +V +H L + + H D
Sbjct: 978 EADKWGFDHTSSIRITGRHIINIWRAMRSEMNLLQYTMENVVFHLLHRR---IPHYSFRD 1034
Query: 529 LQIALLQPSDPKSNAAPLRY 548
L A Q P+ + Y
Sbjct: 1035 LT-AWYQSDKPRDFMKVINY 1053
Score = 47 (21.6 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 181 IPPGKWQLRGQHKFSNTNRPCVSRCQLEIDVSTDDIVS 218
IPPG W L + P S C LE DV DI++
Sbjct: 213 IPPG-WIL------DESVLPKQSHCPLEADVCVQDILN 243
Score = 42 (19.8 bits), Expect = 3.4e-08, Sum P(4) = 3.4e-08
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 191 QHKFSNT---NRPCVSRCQLEIDVSTDDIVSHAPEEIDVS 227
QHK S + +S LE+ V+T ++ PEE +++
Sbjct: 824 QHKKSTSVEHQTQYMSTMSLEVHVNTRGVLLPNPEEDEIA 863
Score = 37 (18.1 bits), Expect = 9.7e-07, Sum P(4) = 9.7e-07
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 403 TFLGRVKDIRSVIKDSFI 420
TFLGRV+ R K F+
Sbjct: 1166 TFLGRVQSWRGRNKMGFL 1183
Score = 37 (18.1 bits), Expect = 9.7e-07, Sum P(4) = 9.7e-07
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 451 TFLGRVKDIRSVIKDSFI 468
TFLGRV+ R K F+
Sbjct: 1166 TFLGRVQSWRGRNKMGFL 1183
>UNIPROTKB|G4NL37 [details] [associations]
symbol:MGG_02986 "DNA polymerase" species:242507
"Magnaporthe oryzae 70-15" [GO:0009405 "pathogenesis" evidence=IMP]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0009405
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
EMBL:CM001237 GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 RefSeq:XP_003720713.1
EnsemblFungi:MGG_02986T0 GeneID:2682539 KEGG:mgr:MGG_02986
Uniprot:G4NL37
Length = 1782
Score = 111 (44.1 bits), Expect = 1.7e-08, Sum P(5) = 1.7e-08
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 32 IEHYTGEPIPGMP-------GSQL--KP-VPIVRMFGVTMEGNSVCCHVHGFSPYLYVSA 81
I+HY P P SQL +P VP++R+FG T G VC H+HG PYL++
Sbjct: 11 IDHYQATPTQYDPCLRNDVRHSQLFKEPKVPVIRVFGSTQTGQKVCAHIHGAFPYLFIEY 70
Query: 82 PKEFNSTHCRAFKEALNRAI 101
+ + AF L+ +I
Sbjct: 71 NGKLDQEEVGAFSYRLHLSI 90
Score = 78 (32.5 bits), Expect = 1.7e-08, Sum P(5) = 1.7e-08
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 357 TETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAK 395
+E +L+ + +R DPDI TGY + + YLI RA+
Sbjct: 944 SELDLMVRMVEIVRTHDPDILTGYEVHGGSWGYLIERAR 982
Score = 70 (29.7 bits), Expect = 1.7e-08, Sum P(5) = 1.7e-08
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 154 YKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLR----GQHKFSNTNRPCV----SRC 205
++ +E+++ + ++FM D ++ GC +IE K++ + P + S
Sbjct: 160 FQPYEAHLQYILQFMTDYNLYGCGYIEASSVKFRAPVPQIDDDDMDSVMTPHIWHNQSIS 219
Query: 206 QLEI-DVSTDDIVSHAPEEIDVSTDDIVS 233
Q +I D + SH P E+D+ DI++
Sbjct: 220 QKQITDHHSLPRASHCPIEVDICVQDILN 248
Score = 50 (22.7 bits), Expect = 1.7e-08, Sum P(5) = 1.7e-08
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 474 GKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQ 517
G TI GR ++ + E L YT+ +V +H L +
Sbjct: 1012 GFNTTSTIRVTGRHMINIWRAMRGELNLLQYTMENVVWHLLHRR 1055
Score = 43 (20.2 bits), Expect = 7.8e-08, Sum P(5) = 7.8e-08
Identities = 30/136 (22%), Positives = 58/136 (42%)
Query: 403 TFLGRVKDIRSVIKDSFIQ---SKQMGKRENKTINFEGNS------DRRETLGVKNFTFL 453
TFLGR+ D R K F + K++ + + IN N + R++L K T
Sbjct: 1195 TFLGRIVDWRGTNKMGFAEYRRRKRLLELLQEHINIAPNGVMYTKPEIRKSLLAKMLT-- 1252
Query: 454 GRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYT----LNSV 509
+ + R ++K Q K K + +N ++ LL + Y S++ + +
Sbjct: 1253 -EILETRVMVKSGMKQDKD-DKTLQQLLN-NRQLALKLLANVTYGYTSASFSGRLPCSEI 1309
Query: 510 SYHFLQEQKEDVQHSI 525
+ +Q +E ++ +I
Sbjct: 1310 ADSIVQTGRETLERAI 1325
Score = 42 (19.8 bits), Expect = 1.7e-08, Sum P(5) = 1.7e-08
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 242 KVAPLRILSFDIECAGRKGIFPDPNHDPI 270
+VA + +S +I R + PDP D +
Sbjct: 862 EVAYMSTMSIEIHVNTRGKLVPDPEKDEV 890
>UNIPROTKB|Q8X1U8 [details] [associations]
symbol:UPR1 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT EMBL:AB077040 ProteinModelPortal:Q8X1U8
STRING:Q8X1U8 Uniprot:Q8X1U8
Length = 1926
Score = 129 (50.5 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 50/209 (23%), Positives = 93/209 (44%)
Query: 51 VPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNSTHCRAFKEALNRAIIADMRGNKD 110
VP++R+FG T +G VC H+HG PYLYV E++ + + A+ R KD
Sbjct: 40 VPVIRVFGSTDKGQKVCAHIHGAFPYLYV----EYDGN----LEPNKDHALAISYR--KD 89
Query: 111 EIQEAVLMVEIVQKQTVFGFWGEEL--ENFLKI---TESVFP---------TFPTHTYKA 156
I++ V + F+G + +LKI V + ++
Sbjct: 90 PIRDRPKYVARISLTKGIPFYGFHVGYRFYLKIYLFNPVVMSRLVDLLQQGVIMSRKFQP 149
Query: 157 FESNIDFDIRFMVDNDIVGCNWIE---------IPPGKWQLRG---QHKFSNTNRPCVSR 204
+E+++ + ++FM D ++ GCN+++ +P + G +H + +T P
Sbjct: 150 YEAHLQYLLQFMADYNLYGCNYLDAAMATFRAPVPKHDSNIEGREAEHHWDDTTIPS--- 206
Query: 205 CQLEIDVSTDDIVSHAPEEIDVSTDDIVS 233
+L D + SH E+D+ +DI++
Sbjct: 207 -ELITDNYSLPRASHCSLEVDICVEDILN 234
Score = 90 (36.7 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 330 SENIFVKNVFTLNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPY 389
SE+ + + +T P+V TE +++ + +R DPDIFTGY + + Y
Sbjct: 984 SEDSLLADRIRKHTSVPVVQET-----TELDMMVRMVEIVRNHDPDIFTGYEVHGSSWGY 1038
Query: 390 LINRAK 395
LI RA+
Sbjct: 1039 LIERAR 1044
Score = 53 (23.7 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 18/75 (24%), Positives = 29/75 (38%)
Query: 474 GKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIISDLQIAL 533
G +I GR ++ + E L YT+ +V +H L + +SD ++
Sbjct: 1074 GFNTTSSIRITGRHMINIWRAMRGELNLLQYTMENVVWHLLHRRIPHYSWKTLSDWYLS- 1132
Query: 534 LQPSDPKSNAAPLRY 548
PK LRY
Sbjct: 1133 ---DRPKDLDKVLRY 1144
Score = 37 (18.1 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 237 EGEWSKVAPLRILSFDIECAGRKGIFPDPNHDPI 270
E + + + +S ++ R + PDP D +
Sbjct: 920 ESKQDQAQYMSAMSLEVHVNTRGKLVPDPEEDEV 953
>SGD|S000006088 [details] [associations]
symbol:REV3 "Catalytic subunit of DNA polymerase zeta"
species:4932 "Saccharomyces cerevisiae" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0070987 "error-free translesion synthesis"
evidence=IDA] [GO:0042276 "error-prone translesion synthesis"
evidence=IGI;IDA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 SGD:S000006088
GO:GO:0005739 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 EMBL:BK006949
SUPFAM:SSF53098 EMBL:X96770 GO:GO:0003887 GO:GO:0070987
GO:GO:0042276 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 HOGENOM:HOG000194392 OrthoDB:EOG4FN7RT
EMBL:M29683 EMBL:Z73523 PIR:A33602 RefSeq:NP_015158.1
ProteinModelPortal:P14284 SMR:P14284 IntAct:P14284
MINT:MINT-2731570 STRING:P14284 PRIDE:P14284 EnsemblFungi:YPL167C
GeneID:855936 KEGG:sce:YPL167C CYGD:YPL167c OMA:DRWGYTH
NextBio:980687 Genevestigator:P14284 GermOnline:YPL167C
Uniprot:P14284
Length = 1504
Score = 108 (43.1 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 43 MPGSQLKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAPKEFNST----H--CRAFKEA 96
+P +Q VP +R+FG G+ V CHVHG PY+++ + T H C +
Sbjct: 48 LPLNQFSQVPNIRVFGALPTGHQVLCHVHGILPYMFIKYDGQITDTSTLRHQRCAQVHKT 107
Query: 97 LNRAIIADMRGNKDE 111
L I A + KD+
Sbjct: 108 LEVKIRASFKRKKDD 122
Score = 89 (36.4 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 32/122 (26%), Positives = 61/122 (50%)
Query: 303 SQVI-CCKTETELLDKWSAF--IRTMGQGASENIFVKNVFTLNTCAPIVGSQVICCKTET 359
S +I C + ET LD A+ I + + + ++ F + C + V+ ++E
Sbjct: 692 SMIIWCLEEETFPLDLDIAYEGIMIVHKASEDSTFPTKI---QHCINEI--PVMFYESEF 746
Query: 360 ELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTF-LGRVK-DIRSVIKD 417
E+ + + + LDPDI +G+ I NF + Y+I R + + + L RVK I++ + D
Sbjct: 747 EMFEALTDLVLLLDPDILSGFEIHNFSWGYIIERCQKIHQFDIVRELARVKCQIKTKLSD 806
Query: 418 SF 419
++
Sbjct: 807 TW 808
Score = 60 (26.2 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 154 YKAFESNIDFDIRFMVDNDIVGCNWIEI 181
++ +ES+I + +++ D ++ GC+WI +
Sbjct: 186 FEIYESHIPYLLQWTADFNLFGCSWINV 213
Score = 47 (21.6 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 453 LGRVK-DIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDLLFVLLREYKLRSYTLNSVSY 511
L RVK I++ + D++ G + I GR ++ L + L YT+ S ++
Sbjct: 793 LARVKCQIKTKLSDTW------GYAHSSGIMITGRHMINIWRALRSDVNLTQYTIESAAF 846
Query: 512 HFLQEQ 517
+ L ++
Sbjct: 847 NILHKR 852
>DICTYBASE|DDB_G0271608 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016035 "zeta
DNA polymerase complex" evidence=ISS;IBA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0271608 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GenomeReviews:CM000151_GR EMBL:AAFI02000006 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GO:GO:0016035 RefSeq:XP_645553.1 ProteinModelPortal:Q55AZ3
EnsemblProtists:DDB0232271 GeneID:8618010 KEGG:ddi:DDB_G0271608
InParanoid:Q55AZ3 OMA:TTCELEV Uniprot:Q55AZ3
Length = 2701
Score = 104 (41.7 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 31/102 (30%), Positives = 48/102 (47%)
Query: 19 NPKEDKIVF---QQISIEHYTGEPIPGM-----PGSQ------LKPVPIVRMFGVTMEGN 64
N K+ V+ + + I++Y P+ G+ P S ++ VPIVR+FG T G
Sbjct: 9 NTKQQSRVYFSVRIVDIDYYQTRPVQGLDVMVSPLSSSNNNKTIEEVPIVRIFGSTPAGQ 68
Query: 65 SVCCHVHGFSPYLYV-----SAPKEFNSTHCRAFKEALNRAI 101
C H+H PY ++ S E+ ST+ R LN A+
Sbjct: 69 KCCLHLHQLFPYFFIEYTENSLSTEYVSTYIRKLVSTLNLAL 110
Score = 88 (36.0 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 38/148 (25%), Positives = 60/148 (40%)
Query: 358 ETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFLGRVKDIRSVIKD 417
E EL + IR D DI G+ +Q YLI RA LG+ + RV +
Sbjct: 1793 EFELFKSFVELIRSYDIDILVGFEVQMSSIGYLIERANQLGLSLCDEISRVISNTGLTGQ 1852
Query: 418 SFIQSKQMGKRENKTINFEGNSDRRETLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRE 477
+ +K G K N+ S R+ ++FT G +K I ++ + + + +
Sbjct: 1853 NTTTTK--GANRTKRTNYF--SKDRDQYSFEHFT--G-MKIIGRIVLNLWRLLRHEITLD 1905
Query: 478 NKTINFEGRVCFDLLFVLLREYKLRSYT 505
N T +CF +L EY + T
Sbjct: 1906 NYTYQ---NLCFHVLNKRQEEYSFKKLT 1930
Score = 57 (25.1 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 246 LRILSFDIECAGRKGIFPDPNHDPIIQIANMCISQGASENI 286
L ILS +I C R + P+P D I I CI S I
Sbjct: 1716 LTILSVEIHCNSRDNLNPNPEFDSIQSII-YCIRDEQSIEI 1755
Score = 49 (22.3 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 154 YKAFESNIDFDIRFMVDNDIVGCNWIEIPPGKWQLRGQHKFSN--TNRPCVSRCQLEIDV 211
++ FES+I F ++ +D ++ G + IE ++L K T +S+ L ++
Sbjct: 197 FRVFESHIPFILQVFLDYNLSGMSNIEFTNAYFRLPLPEKLKKWGTKEYDLSQLNLNSNI 256
Query: 212 S----TDDIVSH 219
S +DD + +
Sbjct: 257 SESSSSDDCIEN 268
>UNIPROTKB|A8IZI7 [details] [associations]
symbol:CHLREDRAFT_117850 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR012337 GO:GO:0007346 GO:GO:0003676 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 GO:GO:0006287
GO:GO:0043625 KO:K02350 EMBL:DS496129 RefSeq:XP_001694422.1
EnsemblPlants:EDP02417 GeneID:5720007 KEGG:cre:CHLREDRAFT_117850
ProtClustDB:CLSN2696999 Uniprot:A8IZI7
Length = 135
Score = 116 (45.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 30 ISIEHYTGEPIP-------GMPGSQLKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYVSAP 82
+S+++Y PIP + G+ + VP++R+FG T G C HVH PY YV
Sbjct: 14 VSLDYYMAPPIPHLDFCFSSLEGTTVDQVPVIRIFGSTPAGQKACVHVHRAFPYFYVPYD 73
Query: 83 KEFNST 88
+ F +T
Sbjct: 74 ESFPTT 79
>UNIPROTKB|F1NQT0 [details] [associations]
symbol:REV3L "DNA polymerase" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 OMA:DGTADEN
GeneTree:ENSGT00550000074640 EMBL:AADN02002055 EMBL:AADN02002056
IPI:IPI00582758 Ensembl:ENSGALT00000024245 Uniprot:F1NQT0
Length = 3100
Score = 91 (37.1 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 34/119 (28%), Positives = 50/119 (42%)
Query: 341 LNTCAPIVGSQVICCKTETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVK 400
L T + I G +V E L + ++ DPDI GY +Q + YL+ RA L V
Sbjct: 2335 LLTRSGITGLEVSYATDERTLFQEVVNIVKRYDPDILLGYEVQMHSWGYLLQRAAALNVD 2394
Query: 401 NFTFLGRVKDIRSVIKDSFI-QSKQMGKRENKTINFEG----NSDR--RETLGVKNFTF 452
+ RV D ++ F + + G IN G N R R + + N+TF
Sbjct: 2395 LCQMISRVPDDNK--ENRFAAELDEYGSDTMSEINIVGRIILNIWRMMRNEVNLMNYTF 2451
Score = 89 (36.4 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 32/139 (23%), Positives = 61/139 (43%)
Query: 63 GNSVCCHVHGFSPYLYVSAPK--EFNSTHCRAFKEALNRAIIADMRGNKDEIQEAVLMVE 120
G C H+HG PYLYV + + R +++RA+ + GN + V V
Sbjct: 1 GQKTCLHLHGVFPYLYVPYDGFGQHPEHYLRQVAFSIDRALNVAL-GNPSSTIQHVFKVS 59
Query: 121 IVQKQTVFGFWGEELENFLKI-------TESVFPTFP-----THTYKAFESNIDFDIRFM 168
+V +G+ +E + F+KI + V +Y+ E++I + ++
Sbjct: 60 LVSGMPFYGYHEKERQ-FMKIYLYNPAMVKRVCELLQGGAIMNKSYQPHEAHIPYLLQLF 118
Query: 169 VDNDIVGCNWIEIPPGKWQ 187
+D ++ G N I + K++
Sbjct: 119 IDYNLYGMNLINLAAVKFR 137
Score = 59 (25.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 242 KVAPLRILSFDIECAGRKGIFPDPNHDPIIQIANMCIS 279
+V L ++S ++ R+ + PDP DPI + C+S
Sbjct: 2263 EVQHLTLISMELHARTRRDLEPDPEFDPICALF-YCVS 2299
Score = 42 (19.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 203 SRCQLEIDVSTDDIVSHAPEEIDV 226
S C+LE+D DI++ E +
Sbjct: 186 STCELEVDAVAADILNQLDIEAQI 209
>UNIPROTKB|Q75F27 [details] [associations]
symbol:AGOS_AAL099C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE016814
GenomeReviews:AE016814_GR GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT RefSeq:NP_982443.2 STRING:Q75F27
EnsemblFungi:AAS50267 GeneID:4618518 KEGG:ago:AGOS_AAL099C
Uniprot:Q75F27
Length = 1464
Score = 99 (39.9 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 44 PGSQLKPVPIVRMFGVTMEGNSVCCHVHGFSPYLYVS--APKE---FNS-THCRAFKEAL 97
PG VPI+R +G G+++ H+HG PYL++S AP + +NS C L
Sbjct: 62 PGKAFSTVPIIRFYGKLTSGHNILSHLHGALPYLFISCDAPPDELRYNSKATCHRLHVLL 121
Query: 98 NRAII 102
A++
Sbjct: 122 ELALL 126
Score = 69 (29.3 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 357 TETELLDKWSAFIRELDPDIFTGYNIQNFDFPYLINRAKHLGVKNFTFL-GRV-KDIRSV 414
+E EL+ +++ + +DPDI +GY + Y++ RA+ +F L R+ +D RS
Sbjct: 703 SEYELITEFAKLVLIIDPDILSGYETNKSSWGYILARAELSHNIDFGLLISRLSRDDRSG 762
Query: 415 IKDSFIQSKQMG 426
+ + S G
Sbjct: 763 LASEWNYSHSAG 774
Score = 58 (25.5 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 481 INFEGRVCFDLLFVLLREYKLRSYTLNSVSYHFLQEQKEDVQHSIIS 527
I GR ++ + E L Y + +V+YH L E+ H +S
Sbjct: 775 IKIAGRHMLNVWRKMRTEVNLAKYNIENVAYHLLHERLPKFTHETLS 821
Score = 40 (19.1 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 249 LSFDIECAGRKGIFPDPNHDPIIQI 273
LS +I R+ + P+P D I I
Sbjct: 630 LSMEIHVDTRRNMLPNPRTDEIKMI 654
>TAIR|locus:2028496 [details] [associations]
symbol:AT1G49180 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IEA] [GO:0004713
"protein tyrosine kinase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0016301 "kinase activity" evidence=ISS] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] InterPro:IPR000719 InterPro:IPR002290
InterPro:IPR008271 InterPro:IPR011009 InterPro:IPR012337
Pfam:PF00069 PROSITE:PS00108 PROSITE:PS50011 SMART:SM00220
EMBL:CP002684 GO:GO:0005524 SUPFAM:SSF56112 GO:GO:0004674
GO:GO:0003676 SUPFAM:SSF53098 IPI:IPI00535763 RefSeq:NP_175344.2
UniGene:At.38286 ProteinModelPortal:F4I1N8 SMR:F4I1N8 PRIDE:F4I1N8
EnsemblPlants:AT1G49180.1 GeneID:841341 KEGG:ath:AT1G49180
OMA:APEVLQF Uniprot:F4I1N8
Length = 408
Score = 119 (46.9 bits), Expect = 0.00052, P = 0.00052
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 444 TLGVKNFTFLGRVKDIRSVIKDSFIQSKQMGKRENKTINFEGRVCFDL 491
TLG+++F FLGR+K+ R +KD+ S+Q G RE K GR+ FDL
Sbjct: 253 TLGIEDFPFLGRIKNSRVWVKDTTFSSRQHGTRERKVATINGRLQFDL 300
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 551 551 0.00097 119 3 11 22 0.38 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 46
No. of states in DFA: 609 (65 KB)
Total size of DFA: 329 KB (2165 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.05u 0.11s 46.16t Elapsed: 00:00:05
Total cpu time: 46.07u 0.11s 46.18t Elapsed: 00:00:06
Start: Thu Aug 15 16:16:04 2013 End: Thu Aug 15 16:16:10 2013