BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12448
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta
Length = 919
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDK 41
+AEDP++VLENN+ +DS YYL NQL P+I I +PI+GDK
Sbjct: 872 RAEDPLFVLENNIQVDSRYYLTNQLQNPIISIVAPIIGDK 911
>pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
pdb|2GV9|B Chain B, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
Length = 1193
Score = 30.4 bits (67), Expect = 0.47, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKA---ESILLR 48
AEDP Y + + V ++++YY + L + F + G+ A ES+L R
Sbjct: 1101 AEDPAYAIAHGVALNTDYYFSHLLGAACV-TFKALFGNNAKITESLLKR 1148
>pdb|4FE3|A Chain A, Structure Of Murine Cytosolic 5'-Nucleotidase Iii
Complexed With Uridinine Monophosphate
Length = 297
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 25 QLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKVVLHD 84
+ K +RI +P ++ L++G + +I++ + LS F + C C ++ +
Sbjct: 15 EFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFNM-TLSRFSYNGKRCPTCHNIIDN 73
Query: 85 TSLSNALCNFCLAKEK-QYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSR 140
L C L + K QYY E D +E+KF + G L EQ I ++
Sbjct: 74 CKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPKAK 130
>pdb|2BDU|A Chain A, X-Ray Structure Of A Cytosolic 5'-Nucleotidase Iii From
Mus Musculus Mm.158936
pdb|2BDU|B Chain B, X-Ray Structure Of A Cytosolic 5'-Nucleotidase Iii From
Mus Musculus Mm.158936
pdb|2G06|A Chain A, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, With Bound Magnesium(ii)
pdb|2G06|B Chain B, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, With Bound Magnesium(ii)
pdb|2G08|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Product- Transition Complex Analog With Aluminum
Fluoride
pdb|2G08|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Product- Transition Complex Analog With Aluminum
Fluoride
pdb|2G09|A Chain A, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, Product Complex
pdb|2G09|B Chain B, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, Product Complex
pdb|2G0A|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type 1
With Lead(Ii) Bound In Active Site
pdb|2G0A|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type 1
With Lead(Ii) Bound In Active Site
pdb|2Q4T|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Cytosolic 5'-Nucleotidase Iii From Mus Musculus
Mm.158936
pdb|2Q4T|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Cytosolic 5'-Nucleotidase Iii From Mus Musculus
Mm.158936
Length = 297
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 25 QLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKVVLHD 84
+ K +RI +P ++ L++G + +I+ T LS F + C C ++ +
Sbjct: 15 EFQKSSVRIKNPTRVEEIICGLIKGGAAKLQII-TDFDXTLSRFSYNGKRCPTCHNIIDN 73
Query: 85 TSLSNALCNFCLAKEK-QYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSR 140
L C L + K QYY E D +E+KF G L EQ I ++
Sbjct: 74 CKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYXVEWYTKSHGLLIEQGIPKAK 130
>pdb|2G07|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Phospho- Enzyme Intermediate Analog With Beryllium
Fluoride
pdb|2G07|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Phospho- Enzyme Intermediate Analog With Beryllium
Fluoride
Length = 297
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 25 QLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKVVLHD 84
+ K +RI +P ++ L++G + +I+ T LS F + C C ++ +
Sbjct: 15 EFQKSSVRIKNPTRVEEIICGLIKGGAAKLQII-TXFDXTLSRFSYNGKRCPTCHNIIDN 73
Query: 85 TSLSNALCNFCLAKEK-QYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSR 140
L C L + K QYY E D +E+KF G L EQ I ++
Sbjct: 74 CKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYXVEWYTKSHGLLIEQGIPKAK 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,606,822
Number of Sequences: 62578
Number of extensions: 160853
Number of successful extensions: 406
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 23
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)