BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12448
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1
PE=2 SV=1
Length = 1103
Score = 206 bits (524), Expect = 5e-53, Method: Composition-based stats.
Identities = 91/153 (59%), Positives = 118/153 (77%), Gaps = 4/153 (2%)
Query: 1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AES+LLRGDHTR K V T
Sbjct: 933 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLT 992
Query: 60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
S+VG L F +++ +CIGC+ V+ A+C FC +E + Y+ E LE++F +
Sbjct: 993 SKVGGLLAFTKRRNSCIGCRSVIDH---QGAVCKFCQPRESELYQKEVSHLNALEERFSR 1049
Query: 120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct: 1050 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1082
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 206 bits (523), Expect = 7e-53, Method: Composition-based stats.
Identities = 91/153 (59%), Positives = 117/153 (76%), Gaps = 4/153 (2%)
Query: 1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AE++LLRGDHTR K V T
Sbjct: 936 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLT 995
Query: 60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
+VG L F +++ CIGC+ VL S A+C FC +E + Y+ E LE++F +
Sbjct: 996 GKVGGLLAFAKRRNCCIGCRTVL---SHQGAVCKFCQPRESELYQKEVSHLSALEERFSR 1052
Query: 120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct: 1053 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1085
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1
SV=2
Length = 1107
Score = 205 bits (522), Expect = 9e-53, Method: Composition-based stats.
Identities = 91/153 (59%), Positives = 117/153 (76%), Gaps = 4/153 (2%)
Query: 1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AE++LLRGDHTR K V T
Sbjct: 937 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLT 996
Query: 60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
+VG L F +++ CIGC+ VL S A+C FC +E + Y+ E LE++F +
Sbjct: 997 GKVGGLLAFAKRRNCCIGCRTVL---SHQGAVCEFCQPRESELYQKEVSHLNALEERFSR 1053
Query: 120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct: 1054 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1086
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1
SV=2
Length = 1105
Score = 204 bits (520), Expect = 1e-52, Method: Composition-based stats.
Identities = 91/153 (59%), Positives = 117/153 (76%), Gaps = 4/153 (2%)
Query: 1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AES+LLRGDHTR K V T
Sbjct: 935 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLT 994
Query: 60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
S+VG L F +++ CIGC+ V+ A+C FC +E + Y+ E LE++F +
Sbjct: 995 SKVGGLLAFTKRRNCCIGCRSVIDH---QGAVCKFCQPRESELYQKEVSHLNALEERFSR 1051
Query: 120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct: 1052 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1084
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 202 bits (515), Expect = 6e-52, Method: Composition-based stats.
Identities = 90/153 (58%), Positives = 117/153 (76%), Gaps = 4/153 (2%)
Query: 1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
MK+EDP++VLE+++PID+ YYL QL+KPL+RIF PILG+ +AES+LLRGDHTR K V T
Sbjct: 933 MKSEDPLFVLEHSLPIDTQYYLGQQLAKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLT 992
Query: 60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
S+VG L F +++ CIGC+ V++ A+C FC +E + Y+ E LE++F +
Sbjct: 993 SKVGGLLAFTKRRNCCIGCRSVINH---QGAVCEFCQPRESELYQKEVSHLNALEERFSR 1049
Query: 120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct: 1050 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1082
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 196 bits (497), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 116/151 (76%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
KAEDP+YVLEN+VPID+ YYLE QLSKPL+RIF PILGD AESILL+G+HTRT+ V TS+
Sbjct: 924 KAEDPLYVLENSVPIDATYYLEQQLSKPLLRIFEPILGDNAESILLKGEHTRTRTVVTSK 983
Query: 62 VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
VG L+ F+ KK +C+GCK ++ LC C + + Y+ E ++LE+ F +LW
Sbjct: 984 VGGLAGFMTKKTSCLGCKSLMPKGYEQACLCPHCEPRMSELYQKEVGAKRELEETFSRLW 1043
Query: 122 TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
T+CQ CQ SLHE+VIC++RDCPIFYMR+KV+
Sbjct: 1044 TECQRCQESLHEEVICSNRDCPIFYMRQKVR 1074
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/164 (55%), Positives = 114/164 (69%), Gaps = 7/164 (4%)
Query: 1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTS 60
M++EDPIYVLENN+PID+ YYLENQLSKPL+RIF PILG+KA S LL GDHTRT ++
Sbjct: 920 MRSEDPIYVLENNIPIDAKYYLENQLSKPLLRIFEPILGEKASS-LLHGDHTRTISMAAP 978
Query: 61 RVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQL 120
VG + F K +TC+GCK + ALC CL + + Y+ + + LE +F +L
Sbjct: 979 SVGGIMKFAVKVETCLGCKAPIKKGK--TALCENCLNRSAELYQRQVAQVNDLEVRFARL 1036
Query: 121 WTQCQTCQGSLHEQVICTSRDCPIFYMR----KKVQSCGHNVKR 160
WTQCQ CQGS+H+ VICTSRDCPIFYMR KK+Q +KR
Sbjct: 1037 WTQCQRCQGSMHQDVICTSRDCPIFYMRIAEHKKLQQSVDLLKR 1080
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 106/152 (69%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
+AEDP +VL+NN+P+D+ +YL NQL+KPL RIF PILGD+AE IL+ G+HTR + V S+
Sbjct: 908 RAEDPTFVLQNNIPLDTKHYLTNQLAKPLARIFEPILGDRAEKILVEGEHTRVRTVVQSK 967
Query: 62 VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
VG L+ F K TC+GCK VL NA+C C K + + + +LE F +LW
Sbjct: 968 VGGLAAFTTKSATCLGCKSVLPRAESENAVCKHCEPKLPTIFASRMNTMHELENHFGRLW 1027
Query: 122 TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQS 153
T+CQ C ++ ++V C++RDCPI+YMR+KV++
Sbjct: 1028 TECQNCAKTMQDKVNCSARDCPIYYMREKVRN 1059
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 101/151 (66%), Gaps = 3/151 (1%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
++EDPIYVL+NN+PID YYLENQ+SKPL+RIF PIL + + LL G HTR +ST
Sbjct: 943 RSEDPIYVLDNNIPIDPQYYLENQISKPLLRIFEPILKNASRE-LLHGSHTRAVSISTPS 1001
Query: 62 VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
+ F +K+ TC+GCK V+ ++ LC C +E + Y +LE F +LW
Sbjct: 1002 NSGIMKFAKKQLTCLGCKAVISGSN--QTLCFHCKGREAELYCKTVGNVSELEMLFGRLW 1059
Query: 122 TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
TQCQ CQGSLH+ V+CTSRDCPIFY R+K Q
Sbjct: 1060 TQCQECQGSLHQDVLCTSRDCPIFYRRRKAQ 1090
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 104/151 (68%), Gaps = 5/151 (3%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
++EDPIYVL+NN+PID NYYLENQ+SKPL+RIF P+L + ++ LL G HTR+ ++T
Sbjct: 935 RSEDPIYVLQNNIPIDPNYYLENQISKPLLRIFEPVLKNASKE-LLHGSHTRSISITTPS 993
Query: 62 VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
+ F +K+ +C+GCKV + + LC C +E + Y + +LE+ F +LW
Sbjct: 994 NSGIMKFAKKQLSCVGCKVPISN----GTLCASCKGREAELYCKNVSQVAELEEVFGRLW 1049
Query: 122 TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
TQCQ CQGSLH+ V+CTSRDCPIFY R K Q
Sbjct: 1050 TQCQECQGSLHQDVLCTSRDCPIFYRRMKAQ 1080
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 101/157 (64%), Gaps = 3/157 (1%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
K+EDP+YVLEN++PID YYL+ QL+KPL RIF PILG+ LL G HTRT V+ +
Sbjct: 869 KSEDPLYVLENSLPIDVKYYLDQQLTKPLERIFIPILGETKTKELLTGSHTRTIKVAAPK 928
Query: 62 VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCL--AKEKQYYEAENDKYQQLEKKFCQ 119
G L F +K + C+ C+ L +L ALC C+ K Y + LE KF +
Sbjct: 929 TGGLLRFAKKSEVCVSCRTPLKKDNLG-ALCPNCIKDGKGPDLYGNALSQMNYLENKFSR 987
Query: 120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQSCGH 156
LWT+CQ CQGSLH++V+C+++DCPIFYMR K Q H
Sbjct: 988 LWTECQRCQGSLHQEVLCSNKDCPIFYMRTKAQKDVH 1024
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 140 bits (352), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 94/153 (61%), Gaps = 6/153 (3%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
KAEDP+Y LE+N+ +D YYL+ QL PLIRIF PI+ + ++ G+HTRT ST
Sbjct: 939 KAEDPLYALEHNILLDCQYYLDKQLKAPLIRIFKPIMSN--PDLIFHGEHTRTIAQSTLS 996
Query: 62 VGALSMF--VQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
F ++KK+ C+ C L DT + C C KE Y+ +K LE KF +
Sbjct: 997 DNNKGFFGTLKKKKVCMNCPKELTDTE--STTCINCQHKEASLYQTSLEKVTSLETKFSE 1054
Query: 120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
WTQCQ C GSLH+ V+C++RDCPIFYMR KVQ
Sbjct: 1055 AWTQCQRCSGSLHQPVLCSNRDCPIFYMRTKVQ 1087
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 129 bits (325), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
+AEDP++VLENN+ +DS YYL NQL P+I I +PI+GDK + + KI + S+
Sbjct: 938 RAEDPLFVLENNIQVDSRYYLTNQLQNPIISIVAPIIGDKQANGMFV--VKSIKINTGSQ 995
Query: 62 VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
G L F++K + C CK L LC+ CLA+ + Y + LE+K+ +LW
Sbjct: 996 KGGLMSFIKKVEACKSCKGPLRKGE--GPLCSNCLARSGELYIKALYDVRDLEEKYSRLW 1053
Query: 122 TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
TQCQ C G+LH +V+C++++C IFYMR KV+
Sbjct: 1054 TQCQRCAGNLHSEVLCSNKNCDIFYMRVKVK 1084
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 92/152 (60%), Gaps = 8/152 (5%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
+AEDP+YVL+NN+ ID N+YL+ + PL RIF I+ + L GDHTR K + TS
Sbjct: 933 RAEDPLYVLDNNLAIDYNHYLD-AIKSPLSRIFEVIMQNSDS--LFSGDHTRHKTILTSS 989
Query: 62 VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLA-KEKQYYEAENDKYQQLEKKFCQL 120
ALS F++K CIGC + LCN C KE Y + ++ + +F QL
Sbjct: 990 QTALSKFLKKSVRCIGCNSSIKKP----PLCNHCKENKEFSIYMQKIKDFKNKQNEFFQL 1045
Query: 121 WTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
WT+CQ CQG+LH VIC +RDCPIFY R K++
Sbjct: 1046 WTECQRCQGNLHVDVICMNRDCPIFYRRAKIK 1077
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
++EDPIYVLENN+PID +YYLENQ+SKP++RIF PIL + ++ LL G HTR+ +ST
Sbjct: 900 RSEDPIYVLENNIPIDPHYYLENQISKPILRIFEPILKNASKE-LLHGSHTRSISISTPS 958
Query: 62 VGALSMFVQKKQTCIGCKVVL 82
+ F +K+ + K+ L
Sbjct: 959 NSGILRFAKKQLPALVVKLYL 979
>sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1
Length = 1504
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 24/155 (15%)
Query: 13 NVPIDSNYYLENQLSKPLIRIFSPI---LGDKAESILL--RGDHTRTKIVSTSRVGALSM 67
N+ +DS YY+ L PL R+F+ I +G+ A+ I+ R T TK+ + +RVG
Sbjct: 1338 NLELDSEYYINKILIPPLDRLFNLIGINVGNWAQEIVKSKRASTTTTKVENITRVGT--- 1394
Query: 68 FVQKKQTCIGCKVVLHDTSL-SNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQT 126
TC C L T + S LC+ CL K + K + +K++ L T C+T
Sbjct: 1395 ----SATCCNCGEEL--TKICSLQLCDDCLEKRSTTTLSFLIKKLKRQKEYQTLKTVCRT 1448
Query: 127 CQ-------GSLHEQVI--CTSRDCPIFYMRKKVQ 152
C G ++ + C S DCP+FY R K +
Sbjct: 1449 CSYRYTSDAGIENDHIASKCNSYDCPVFYSRVKAE 1483
>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1
SV=3
Length = 3122
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 6 PIYVLEN-NVPIDSNYYLENQLSKPLIRIFSPILGD------KAESILLRGDHTRTKIVS 58
P VL++ + +++ YY+ Q+ PL RIFS I D + I +R+++
Sbjct: 2961 PAEVLQDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYQELPRIQKATSSSRSEL-- 3018
Query: 59 TSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFC 118
R G +S + T + C V D + +C+ C ++ + N + ++LE+K
Sbjct: 3019 EGRKGTISQYF----TTLHCPVC--DDLTQHGICSKCRSQPQHVAIILNQEIRELERKQE 3072
Query: 119 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKV 151
QL C+ C GS + C S +CP+ + +V
Sbjct: 3073 QLIKICRNCTGSFDRHIPCVSLNCPVLFKLSRV 3105
>sp|P30320|DPOL_PBCVN DNA polymerase OS=Paramecium bursaria Chlorella virus NY2A GN=DPO
PE=3 SV=1
Length = 913
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESIL 46
+AEDP + EN++ +D +Y+E+QL KP+ +F P+L D I
Sbjct: 825 RAEDPTFAQENDLIVDRLFYIEHQLMKPICSLFEPLLDDPETEIF 869
>sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1
SV=2
Length = 3130
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 11/151 (7%)
Query: 6 PIYVLEN-NVPIDSNYYLENQLSKPLIRIFSPILGD----KAESILLRGDHTRTKIVSTS 60
P+ VL++ + +++ YY+ Q+ PL RIFS I D E + + ++
Sbjct: 2969 PVEVLQDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYHELPRIHKATSSSRSEPEG 3028
Query: 61 RVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQL 120
R G +S + T + C V D + +C+ C ++ + N + ++LE++ QL
Sbjct: 3029 RKGTISQYF----TTLHCPVC--DDLTQHGICSKCRSQPQHVAVILNQEIRELERQQEQL 3082
Query: 121 WTQCQTCQGSLHEQVICTSRDCPIFYMRKKV 151
C+ C G + C S +CP+ + +V
Sbjct: 3083 VKICKNCTGCFDRHIPCVSLNCPVLFKLSRV 3113
>sp|A7U6F1|DPOL_CEV01 DNA polymerase OS=Chrysochromulina ericina virus GN=dpo PE=3 SV=1
Length = 1623
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRG 49
+ E P+++ ENN+ ID +Y+ NQ+ KPL ++F+ +L D + + RG
Sbjct: 1528 RIETPLFINENNIEIDYGFYITNQIMKPLQQLFALVLEDMEDFVTKRG 1575
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 16 IDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRT--KIVSTSRVG----ALSMFV 69
+D NYY+ N L PL R + +LG A+S RT K+ T + G L F+
Sbjct: 1318 LDINYYINNSLIPPLDRFLN-LLGASAQSWYHEMPKPRTSLKLTETVKGGIQKKTLDTFL 1376
Query: 70 QKK--QTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTC 127
+K +C+ + + + N+LC+ CL ++ KK L+ C+ C
Sbjct: 1377 MEKLCSSCLKNNIEIIPDKI-NSLCSDCLKNPCATISKAVTQHNAYNKKLSLLFDICRGC 1435
Query: 128 QG-SLHEQVICTSRDCPIFYMRKKVQS 153
S + V+C S C ++Y R K ++
Sbjct: 1436 SKLSSSDPVLCKSNSCKVYYDRAKTEN 1462
>sp|P30321|DPOL_PBCV1 DNA polymerase OS=Paramecium bursaria Chlorella virus 1 GN=DPO PE=3
SV=2
Length = 913
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESIL 46
KAEDP + +N + +D +Y+E+QL KP+ +F P+L D + I
Sbjct: 824 FKAEDPTFAQDNGLIVDRLFYIEHQLLKPICSLFEPLLDDPEKEIF 869
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPIL---GDKAESILL 47
AEDP Y +ENN+ I+++ Y E Q+ K + SPI G K E LL
Sbjct: 946 AEDPAYAIENNLKINADKYFE-QIMKAVTNAISPIFPKTGIKKEKFLL 992
>sp|Q9E6N9|DPOL_GAHVM DNA polymerase catalytic subunit OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV043 PE=3 SV=1
Length = 1220
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDK---AESILLR 48
AEDP Y+L NN+P++++YYL + L L F + G+ E++L R
Sbjct: 1117 AEDPKYLLANNIPLNTDYYLSHLLGT-LCVTFKALFGNDVKITETVLRR 1164
>sp|A7U6F2|DPOL_POV01 DNA polymerase OS=Pyramimonas orientalis virus GN=dpo PE=3 SV=1
Length = 1206
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 2 KAEDPIYVLENNVPIDSNYYLENQLSKPL 30
K E P Y+ ENNV ID +Y+ NQL KP+
Sbjct: 1097 KIEHPSYIKENNVKIDYIFYITNQLMKPI 1125
>sp|Q6S6P1|DPOL_EHV1V DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
V592) GN=30 PE=3 SV=1
Length = 1220
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQL 26
AEDP YV EN+VP++++YY + L
Sbjct: 1121 AEDPTYVSENDVPLNTDYYFSHLL 1144
>sp|P28858|DPOL_EHV1B DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
Ab4p) GN=30 PE=3 SV=1
Length = 1220
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQL 26
AEDP YV EN+VP++++YY + L
Sbjct: 1121 AEDPTYVSENDVPLNTDYYFSHLL 1144
>sp|Q6SW77|DPOL_HCMVM DNA polymerase catalytic subunit OS=Human cytomegalovirus (strain
Merlin) GN=UL54 PE=3 SV=1
Length = 1242
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPIL 38
AEDP YV E+ VPI ++ Y E Q+ K + + SP+
Sbjct: 1171 AEDPSYVREHGVPIHADKYFE-QVLKAVTNVLSPVF 1205
>sp|P08546|DPOL_HCMVA DNA polymerase OS=Human cytomegalovirus (strain AD169) GN=UL54 PE=1
SV=2
Length = 1242
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPIL 38
AEDP YV E+ VPI ++ Y E Q+ K + + SP+
Sbjct: 1171 AEDPSYVREHGVPIHADKYFE-QVLKAVTNVLSPVF 1205
>sp|O71121|DPOL_RHCM6 DNA polymerase OS=Rhesus cytomegalovirus (strain 68-1) GN=UL54 PE=3
SV=1
Length = 1035
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPIL 38
AEDP YV E+ VPI ++ Y +Q+ K + + SP+
Sbjct: 965 AEDPTYVREHGVPIHADKYF-DQVIKSVTNVLSPVF 999
>sp|Q9QJ32|DPOL_HHV6Z DNA polymerase catalytic subunit OS=Human herpesvirus 6B (strain
Z29) GN=U38 PE=3 SV=1
Length = 1012
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPIL 38
AEDP YVLE+ +PI + Y + Q+ K + SPI
Sbjct: 946 AEDPNYVLEHKIPIHAEKYFD-QIIKAVTNAISPIF 980
>sp|Q5UQR0|DPOL_MIMIV DNA polymerase OS=Acanthamoeba polyphaga mimivirus GN=POLB PE=3 SV=1
Length = 1740
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 4 EDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDK 41
E P YV+ NN+ ID YYLE+Q+ P +I ++ K
Sbjct: 1603 EHPEYVIANNLKIDYLYYLEHQIINPASQILELMMDTK 1640
>sp|P89453|DPOL_HHV2H DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain HG52)
GN=UL30 PE=3 SV=1
Length = 1240
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKA---ESILLR 48
AEDP Y + VP++++YY + L + F + G+ A ES+L R
Sbjct: 1148 AEDPGYAIARGVPLNTDYYFSHLLGAACV-TFKALFGNNAKITESLLKR 1195
>sp|P07918|DPOL_HHV21 DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain 186)
GN=UL30 PE=3 SV=1
Length = 1240
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKA---ESILLR 48
AEDP Y + VP++++YY + L + F + G+ A ES+L R
Sbjct: 1148 AEDPGYAIARGVPLNTDYYFSHLLGAACV-TFKALFGNNAKITESLLKR 1195
>sp|P28857|DPOL_HHV6U DNA polymerase OS=Human herpesvirus 6A (strain Uganda-1102) GN=U38
PE=3 SV=1
Length = 1012
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 3 AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPIL 38
AEDP YV+E+ +PI + Y +Q+ K + SPI
Sbjct: 946 AEDPNYVIEHKIPIHAEKYF-DQIIKAVTNAISPIF 980
>sp|C5FUK3|ADMB_ARTOC Disintegrin and metalloproteinase domain-containing protein B
OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480)
GN=ADM-B PE=3 SV=1
Length = 796
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 116 KFCQLWTQCQTCQGSLHEQVICT--SRDCPIFYMRKKVQSCGHNVKRARGVCMSK 168
KF T C+ G + CT S DCP K ++CG N++ A G C S+
Sbjct: 572 KFASSSTICRLSSGPCDPEEKCTGNSGDCPRDTHSKNGETCGTNLQCASGQCTSR 626
>sp|P04932|MSP1_PLAFK Merozoite surface protein 1 OS=Plasmodium falciparum (isolate K1 /
Thailand) GN=MSP-1 PE=3 SV=2
Length = 1630
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 5 DPIYVLENNVPIDSNYY--LENQLSKPLIRIFSPIL---------GDKAESILLRGDHTR 53
D ++ ++NN+P+ + + L N LS+ + I+ + DK +++L
Sbjct: 815 DLLFNIQNNIPVMYSMFDSLNNSLSQLFMEIYEKEMVCNLYKLKDNDKIKNLLEEAKKVS 874
Query: 54 T--KIVSTSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNF----CLAKEKQYYE 104
T K +S+S + LS+ Q K H T+L+N+L F L K K Y+
Sbjct: 875 TSVKTLSSSSMQPLSLTPQDKPEVSANDDTSHSTNLNNSLKLFENILSLGKNKNIYQ 931
>sp|P28040|DPOA_SCHPO DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol1 PE=1 SV=1
Length = 1405
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 2 KAEDPIYVLENN--VPIDSNYYLENQLSKPLIRIFSPILG 39
+A P ++ N + ID NYYL +Q+ P+ R+ +PI G
Sbjct: 1166 RAYSPQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIEG 1205
>sp|P04933|MSP1_PLAFW Merozoite surface protein 1 OS=Plasmodium falciparum (isolate
Wellcome) GN=MSP-1 PE=1 SV=2
Length = 1639
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 5 DPIYVLENNVPIDSNYY--LENQLSKPLIRIFSPIL---------GDKAESILLRGDHTR 53
D ++ ++NN+P+ + + L N LS+ + I+ + DK +++L
Sbjct: 824 DLLFNIQNNIPVMYSMFDSLNNSLSQLFMEIYEKEMVCNLYKLKDNDKIKNLLEEAKKVS 883
Query: 54 T--KIVSTSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNF----CLAKEKQYYE 104
T K +S+S + LS+ Q K H T+L+N+L F L K K Y+
Sbjct: 884 TSVKTLSSSSMQPLSLTPQDKPEVSANDDTSHSTNLNNSLKLFENILSLGKNKNIYQ 940
>sp|D4B1G0|ADMB_ARTBC Disintegrin and metalloproteinase domain-containing protein B
OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS
112371) GN=ADM-B PE=3 SV=2
Length = 799
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 116 KFCQLWTQCQTCQGSLHEQVICT--SRDCPIFYMRKKVQSCGHNVKRARGVCMSK 168
KF T C+T G + C+ S DCP K ++CG +++ A G C S+
Sbjct: 573 KFASSSTICRTSSGPCDPEEKCSGNSGDCPHDIHSKDGETCGTDLQCASGQCTSR 627
>sp|P14995|OTC_PACTA Ornithine carbamoyltransferase, mitochondrial OS=Pachysolen
tannophilus GN=OTC PE=3 SV=1
Length = 347
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 21 YLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVS---TSRVGALSMFVQKKQTCIG 77
Y + Q+ L+ P+ G K S++ TRT++ S + +G MF+ K +G
Sbjct: 55 YHKQQIRSGLVNTTQPLSG-KTVSLIFNKRSTRTRVSSEGAAAYLGGCPMFLGKDDIQLG 113
Query: 78 CKVVLHDTS 86
LHDT+
Sbjct: 114 VNESLHDTT 122
>sp|Q7VRN5|SYW_BLOFL Tryptophan--tRNA ligase OS=Blochmannia floridanus GN=trpS PE=3
SV=1
Length = 334
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 43 ESILLRGDHTRTKIVSTSRVGALSMFV--QKKQTCIGCKVVLHDTSLSNALCNF 94
+SI+ G K+ + +G++ +V QK CI C V LH ++ N LC+
Sbjct: 3 KSIVFSGAQPTGKLTIGNYIGSIRHWVEMQKHYQCIYCIVDLHSITVRNNLCSL 56
>sp|B7GSB6|XPT_BIFLS Xanthine phosphoribosyltransferase OS=Bifidobacterium longum subsp.
infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 /
NCTC 11817 / S12) GN=xpt PE=3 SV=1
Length = 193
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 37 ILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKVVLHDTSLSN-----AL 91
+ KA+SI L GD T + S ++ + V KK G V+L D L+N L
Sbjct: 78 VFAKKAQSINLDGDQYTTTVYSFTKQKEFPVIVAKKYLNAGDHVLLIDDFLANGKALRGL 137
Query: 92 CNFCLA 97
N C A
Sbjct: 138 INLCEA 143
>sp|Q817G5|FPG_BACCR Formamidopyrimidine-DNA glycosylase OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=mutM PE=3 SV=3
Length = 276
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 32 RIFSPILGDKAESILLRGDHTRTKIVSTSRVGA----LSMFVQKKQTCIGCKVVLHDTSL 87
RI+ + E++ G RT I S ++G+ L+++ +K + C+ C +L T +
Sbjct: 202 RIYEATVTTLGEAVKRGGSTIRTYINSQGQIGSFQELLNVYGKKGEPCVTCGTILEKTVV 261
Query: 88 SNALCNFC 95
++C
Sbjct: 262 GGRGTHYC 269
>sp|Q72ZF1|FPG_BACC1 Formamidopyrimidine-DNA glycosylase OS=Bacillus cereus (strain ATCC
10987) GN=mutM PE=3 SV=3
Length = 276
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 32 RIFSPILGDKAESILLRGDHTRTKIVSTSRVGA----LSMFVQKKQTCIGCKVVLHDTSL 87
RI+ + E++ G RT I S ++G+ L+++ +K + C+ C +L T +
Sbjct: 202 RIYEATVTTLGEAVKRGGSTIRTYINSQGQIGSFQELLNVYGKKGEPCVTCGTILEKTVV 261
Query: 88 SNALCNFC 95
++C
Sbjct: 262 GGRGTHYC 269
>sp|Q6HCU5|FPG_BACHK Formamidopyrimidine-DNA glycosylase OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=mutM PE=3 SV=3
Length = 276
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 32 RIFSPILGDKAESILLRGDHTRTKIVSTSRVGA----LSMFVQKKQTCIGCKVVLHDTSL 87
RI+ + E++ G RT I S ++G+ L+++ +K + C+ C +L T +
Sbjct: 202 RIYEATVTTLGEAVKRGGSTIRTYINSQGQIGSFQELLNVYGKKGEPCVTCGTILEKTVV 261
Query: 88 SNALCNFC 95
++C
Sbjct: 262 GGRGTHYC 269
>sp|Q633L1|FPG_BACCZ Formamidopyrimidine-DNA glycosylase OS=Bacillus cereus (strain ZK /
E33L) GN=mutM PE=3 SV=3
Length = 276
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 32 RIFSPILGDKAESILLRGDHTRTKIVSTSRVGA----LSMFVQKKQTCIGCKVVLHDTSL 87
RI+ + E++ G RT I S ++G+ L+++ +K + C+ C +L T +
Sbjct: 202 RIYEATVTTLGEAVKRGGSTIRTYINSQGQIGSFQELLNVYGKKGEPCVTCGTILEKTVV 261
Query: 88 SNALCNFC 95
++C
Sbjct: 262 GGRGTHYC 269
>sp|Q81L04|FPG_BACAN Formamidopyrimidine-DNA glycosylase OS=Bacillus anthracis GN=mutM
PE=3 SV=3
Length = 276
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 32 RIFSPILGDKAESILLRGDHTRTKIVSTSRVGA----LSMFVQKKQTCIGCKVVLHDTSL 87
RI+ + E++ G RT I S ++G+ L+++ +K + C+ C +L T +
Sbjct: 202 RIYEATVTTLGEAVKRGGSTIRTYINSQGQIGSFQELLNVYGKKGEPCVTCGTILEKTVV 261
Query: 88 SNALCNFC 95
++C
Sbjct: 262 GGRGTHYC 269
>sp|Q06GQ1|ACCD_PIPCE Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta,
chloroplastic OS=Piper cenocladum GN=accD PE=3 SV=2
Length = 496
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 104 EAENDKYQQLEKKFCQLWTQCQTCQG 129
E ND + KK+ LW QC+ C G
Sbjct: 213 EKSNDNDFDINKKYRHLWVQCENCYG 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,597,529
Number of Sequences: 539616
Number of extensions: 2107029
Number of successful extensions: 4752
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4691
Number of HSP's gapped (non-prelim): 61
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)