Query psy12448
Match_columns 168
No_of_seqs 135 out of 583
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 19:33:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qht_A Protein (DNA polymerase 98.6 2.1E-09 7E-14 98.4 -1.4 59 1-70 712-770 (775)
2 2gv9_A DNA polymerase; polymer 98.3 2.4E-07 8.3E-12 88.1 2.8 39 1-40 1099-1137(1193)
3 3flo_B DNA polymerase alpha ca 96.4 0.0029 9.9E-08 49.1 4.1 72 71-142 21-110 (206)
4 1s5j_A DNA polymerase I; repli 81.5 0.15 5.3E-06 47.0 -1.8 26 14-40 800-825 (847)
5 1twf_L ABC10-alpha, DNA-direct 56.2 7.1 0.00024 24.7 2.3 27 72-98 28-54 (70)
6 3h0g_L DNA-directed RNA polyme 51.3 12 0.0004 23.2 2.7 27 72-98 21-47 (63)
7 2lcq_A Putative toxin VAPC6; P 36.6 14 0.00049 26.5 1.6 26 72-98 132-157 (165)
8 2apo_B Ribosome biogenesis pro 32.8 20 0.00068 22.0 1.5 21 72-97 6-26 (60)
9 3d00_A Tungsten formylmethanof 32.0 11 0.00036 28.4 0.2 26 71-98 162-187 (191)
10 1pft_A TFIIB, PFTFIIBN; N-term 31.2 11 0.00039 21.6 0.2 26 72-97 5-32 (50)
11 2zjr_Z 50S ribosomal protein L 30.4 22 0.00074 21.7 1.4 22 72-97 30-51 (60)
12 3v2d_5 50S ribosomal protein L 28.9 24 0.00083 21.5 1.5 22 72-97 30-51 (60)
13 1qxf_A GR2, 30S ribosomal prot 27.8 28 0.00097 21.7 1.6 26 72-97 7-34 (66)
14 2aus_D NOP10, ribosome biogene 27.8 27 0.00093 21.4 1.5 21 72-97 5-25 (60)
15 1l8d_A DNA double-strand break 26.6 66 0.0022 21.3 3.6 12 72-83 47-58 (112)
16 1dl6_A Transcription factor II 26.4 33 0.0011 20.5 1.8 26 72-97 11-38 (58)
17 2pk7_A Uncharacterized protein 26.0 18 0.00061 22.7 0.5 26 72-97 8-34 (69)
18 2eqg_A Tumor necrosis factor, 25.7 29 0.001 19.9 1.3 14 133-146 10-23 (49)
19 2hf1_A Tetraacyldisaccharide-1 25.5 17 0.00057 22.7 0.3 26 72-97 8-34 (68)
20 2jr6_A UPF0434 protein NMA0874 25.5 17 0.00059 22.7 0.3 26 72-97 8-34 (68)
21 2jny_A Uncharacterized BCR; st 25.5 23 0.00079 22.1 0.9 26 72-97 10-36 (67)
22 2jrp_A Putative cytoplasmic pr 25.3 19 0.00066 23.4 0.5 23 73-99 19-41 (81)
23 2kdx_A HYPA, hydrogenase/ureas 24.5 41 0.0014 22.8 2.2 27 71-98 72-99 (119)
24 2js4_A UPF0434 protein BB2007; 24.1 18 0.00061 22.8 0.2 26 72-97 8-34 (70)
25 2csz_A Synaptotagmin-like prot 23.7 33 0.0011 22.0 1.4 26 72-97 25-50 (76)
26 2gmg_A Hypothetical protein PF 23.0 58 0.002 22.1 2.6 28 71-98 66-93 (105)
27 4g1a_A AQ-C16C19 peptide; heli 22.4 48 0.0016 17.0 1.6 20 110-129 2-21 (32)
28 4ap4_A E3 ubiquitin ligase RNF 22.3 56 0.0019 21.6 2.5 29 71-99 47-82 (133)
29 1svf_A Protein (fusion glycopr 22.2 26 0.00089 21.7 0.7 17 17-33 46-62 (64)
30 2akl_A PHNA-like protein PA012 20.5 28 0.00096 24.8 0.6 28 72-99 27-54 (138)
31 2hu9_A MERP, mercuric transpor 20.4 29 0.00099 24.5 0.7 15 133-147 34-49 (130)
32 2ct0_A Non-SMC element 1 homol 20.1 66 0.0023 20.1 2.3 34 64-101 7-40 (74)
No 1
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.64 E-value=2.1e-09 Score=98.43 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=28.6
Q ss_pred CCCCChHHHhhcCCCCChhHHhhcccchHHHHHhcccccchhHHHhhhcCCcceeeeecCcccccccccc
Q psy12448 1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQ 70 (168)
Q Consensus 1 ~~a~~P~~~l~~~l~lD~~YYI~kqiipPL~Rif~~i~~d~~~~w~~~~~~~r~~~~~~~~~~~i~~f~~ 70 (168)
+||++|+++.+++++||++|||+|||+|||+|||+++|.++ .++.. ..+++.+|..||.
T Consensus 712 ~ra~~~~~~~~~~~~iD~~yYi~~qi~ppl~ri~~~~g~~~-~~l~~----------~~~~q~~L~~ff~ 770 (775)
T 1qht_A 712 DRAIPADEFDPTKHRYDAEYYIENQVLPAVERILKAFGYRK-EDLRY----------QKTKQVGLGAWLK 770 (775)
T ss_dssp CSEEETTCC---------CHHHHTTHHHHSHHHHHTTTC-------------------------------
T ss_pred hcccCHHHhccCCCCCCHHHHHHhcCHHHHHHHHHHhCCCH-HHhhh----------cCCccccHHHHhh
Confidence 58999999988889999999999999999999999999873 54331 1123457888885
No 2
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=98.28 E-value=2.4e-07 Score=88.13 Aligned_cols=39 Identities=28% Similarity=0.635 Sum_probs=36.9
Q ss_pred CCCCChHHHhhcCCCCChhHHhhcccchHHHHHhcccccc
Q psy12448 1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD 40 (168)
Q Consensus 1 ~~a~~P~~~l~~~l~lD~~YYI~kqiipPL~Rif~~i~~d 40 (168)
++||||.+|++|+++||++|||++ +++||.|+|++|.++
T Consensus 1099 ~~aedp~yv~~~~~~i~~~yY~~~-~~~~~~~~~~~~~~~ 1137 (1193)
T 2gv9_A 1099 ELAEDPAYAIAHGVALNTDYYFSH-LLGAACVTFKALFGN 1137 (1193)
T ss_dssp CCEECHHHHHHTTCCBCHHHHHHH-HHHHHHHHSGGGGTT
T ss_pred hhccCcHHHhhcCCcccHHHHHHH-hhhHHHHHHHHhcCc
Confidence 589999999999999999999999 889999999999984
No 3
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0029 Score=49.13 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=54.0
Q ss_pred ccccccccCcccccC----------CCCCcCCccccCC--hHHHHHHHHHHHHHHHHHHHHHHHHcc--cccCC----CC
Q psy12448 71 KKQTCIGCKVVLHDT----------SLSNALCNFCLAK--EKQYYEAENDKYQQLEKKFCQLWTQCQ--TCQGS----LH 132 (168)
Q Consensus 71 ~s~~C~~C~~~~~~~----------~~~~~lC~~C~~~--~~~~~~~l~~~~~~~e~~~~~~~~~C~--~C~~~----~~ 132 (168)
...+|+.|++..... ..++..|++|... +..+..+|...+|...++|++.|.+|. +|... ..
T Consensus 21 l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~~~~~i~nQl~l~iR~~i~~YY~gwlvCdD~~C~~rTR~lsv 100 (206)
T 3flo_B 21 LELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV 100 (206)
T ss_dssp EEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCHHHHHHHHHHHHHHHHHHHHHCCEEESCTTTCCEESCCCS
T ss_pred eEEECCCCCCccCCCCcccCCCcccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHhcCCcccCCcCCCcccceeec
Confidence 367999998654432 1246789999875 446778888999999999999999998 59872 12
Q ss_pred CcccCcCCCC
Q psy12448 133 EQVICTSRDC 142 (168)
Q Consensus 133 ~~~~C~s~dC 142 (168)
....|....|
T Consensus 101 ~g~rC~~p~C 110 (206)
T 3flo_B 101 FGKRCLNDGC 110 (206)
T ss_dssp STTBCSSTTC
T ss_pred cCCCCCCCCC
Confidence 3457888788
No 4
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=81.50 E-value=0.15 Score=46.96 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCChhHHhhcccchHHHHHhcccccc
Q psy12448 14 VPIDSNYYLENQLSKPLIRIFSPILGD 40 (168)
Q Consensus 14 l~lD~~YYI~kqiipPL~Rif~~i~~d 40 (168)
.+||++|||++ |.||++||++++|.+
T Consensus 800 ~~iD~~~Yl~~-l~~~~~~il~~~g~~ 825 (847)
T 1s5j_A 800 TEIDAEKYLEA-LRSTFEQILRAFGVS 825 (847)
T ss_dssp --CCSSTTHHH-HHTTSTTHHHHHSCC
T ss_pred cCCCHHHHHHh-hhhHHHHHHHHhCCC
Confidence 58999999998 999999999999877
No 5
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=56.25 E-value=7.1 Score=24.71 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=19.8
Q ss_pred cccccccCcccccCCCCCcCCccccCC
Q psy12448 72 KQTCIGCKVVLHDTSLSNALCNFCLAK 98 (168)
Q Consensus 72 s~~C~~C~~~~~~~~~~~~lC~~C~~~ 98 (168)
.-.|..||..+.....+...|+.|..+
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~R 54 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHR 54 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCce
Confidence 458999999854433367889999874
No 6
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=51.27 E-value=12 Score=23.24 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=21.0
Q ss_pred cccccccCcccccCCCCCcCCccccCC
Q psy12448 72 KQTCIGCKVVLHDTSLSNALCNFCLAK 98 (168)
Q Consensus 72 s~~C~~C~~~~~~~~~~~~lC~~C~~~ 98 (168)
.-.|..||........+..-|+.|..+
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~R 47 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGHR 47 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCcE
Confidence 568999999887644467899999764
No 7
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=36.58 E-value=14 Score=26.54 Aligned_cols=26 Identities=27% Similarity=0.623 Sum_probs=19.4
Q ss_pred cccccccCcccccCCCCCcCCccccCC
Q psy12448 72 KQTCIGCKVVLHDTSLSNALCNFCLAK 98 (168)
Q Consensus 72 s~~C~~C~~~~~~~~~~~~lC~~C~~~ 98 (168)
...|..||+..... .....|+.|++.
T Consensus 132 ~y~C~~Cg~~~~~~-~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL-PPGGVCPDCGSK 157 (165)
T ss_dssp CEEESSSCCEESSC-CGGGBCTTTCCB
T ss_pred EEECCCCCCcccCC-CCCCcCCCCCCc
Confidence 57999999988742 123589999875
No 8
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=32.82 E-value=20 Score=21.95 Aligned_cols=21 Identities=19% Similarity=0.534 Sum_probs=12.2
Q ss_pred cccccccCcccccCCCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHDTSLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~~~~~~~lC~~C~~ 97 (168)
-..|..||..+-. .+|+.|+.
T Consensus 6 mr~C~~CgvYTLk-----~~CP~CG~ 26 (60)
T 2apo_B 6 MKKCPKCGLYTLK-----EICPKCGE 26 (60)
T ss_dssp CEECTTTCCEESS-----SBCSSSCS
T ss_pred ceeCCCCCCEecc-----ccCcCCCC
Confidence 3466667665543 45666654
No 9
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=32.03 E-value=11 Score=28.45 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=21.4
Q ss_pred ccccccccCcccccCCCCCcCCccccCC
Q psy12448 71 KKQTCIGCKVVLHDTSLSNALCNFCLAK 98 (168)
Q Consensus 71 ~s~~C~~C~~~~~~~~~~~~lC~~C~~~ 98 (168)
.+..|..||+.+... ...+|..|..+
T Consensus 162 ~~~~C~~CGE~~~~~--g~~~C~~C~~~ 187 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ--DGELCLSCQGG 187 (191)
T ss_dssp CEEECTTTCCEEEGG--GCSSCHHHHTT
T ss_pred CCEECCcCCCChhhC--CCcCCccccCC
Confidence 488999999998874 57999999754
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=31.22 E-value=11 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=16.0
Q ss_pred cccccccCc-ccccC-CCCCcCCccccC
Q psy12448 72 KQTCIGCKV-VLHDT-SLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~-~~~~~-~~~~~lC~~C~~ 97 (168)
...|+.|+. .+... .....+|..|..
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCC
Confidence 457888877 54321 113578888865
No 11
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=30.35 E-value=22 Score=21.67 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=17.3
Q ss_pred cccccccCcccccCCCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHDTSLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~~~~~~~lC~~C~~ 97 (168)
...|..||+.... .-+|++|..
T Consensus 30 l~~c~~cG~~~~p----H~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGKKLS----HHICPNCGY 51 (60)
T ss_dssp CEECTTTCCEECT----TBCCTTTCB
T ss_pred ceECCCCCCEeCC----ceEcCCCCc
Confidence 5689999998543 589999974
No 12
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=28.90 E-value=24 Score=21.47 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=17.2
Q ss_pred cccccccCcccccCCCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHDTSLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~~~~~~~lC~~C~~ 97 (168)
...|..||+.... .-+|++|..
T Consensus 30 l~~c~~cGe~~~~----H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAMKPP----HTVCPECGY 51 (60)
T ss_dssp CEECTTTCCEECT----TSCCTTTCE
T ss_pred eeECCCCCCeecc----eEEcCCCCc
Confidence 5789999997554 578999974
No 13
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=27.81 E-value=28 Score=21.70 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=13.4
Q ss_pred cccccccCccccc--CCCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHD--TSLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~--~~~~~~lC~~C~~ 97 (168)
...|+.|++...- .......|..|..
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~ 34 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGR 34 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCC
T ss_pred EEECCCCCCceEEEecCceEEEcccCCC
Confidence 5677777665431 1113456666653
No 14
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=27.78 E-value=27 Score=21.35 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=12.9
Q ss_pred cccccccCcccccCCCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHDTSLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~~~~~~~lC~~C~~ 97 (168)
-..|..||..+-. .+|+.|..
T Consensus 5 mr~C~~Cg~YTLk-----~~CP~CG~ 25 (60)
T 2aus_D 5 IRKCPKCGRYTLK-----ETCPVCGE 25 (60)
T ss_dssp CEECTTTCCEESS-----SBCTTTCS
T ss_pred ceECCCCCCEEcc-----ccCcCCCC
Confidence 3567777766543 45766655
No 15
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.61 E-value=66 Score=21.27 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=8.2
Q ss_pred cccccccCcccc
Q psy12448 72 KQTCIGCKVVLH 83 (168)
Q Consensus 72 s~~C~~C~~~~~ 83 (168)
...|++||..++
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 446888877765
No 16
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=26.37 E-value=33 Score=20.48 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=16.4
Q ss_pred cccccccCc-ccccC-CCCCcCCccccC
Q psy12448 72 KQTCIGCKV-VLHDT-SLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~-~~~~~-~~~~~lC~~C~~ 97 (168)
...|+.|+. .+... .....+|..|..
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 568999976 33321 123588999964
No 17
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.03 E-value=18 Score=22.71 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=17.5
Q ss_pred cccccccCcccccC-CCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHDT-SLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~~-~~~~~lC~~C~~ 97 (168)
...|+.|+..+... .....+|+.|+.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGL 34 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCc
Confidence 56899998877642 123577888865
No 18
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=25.69 E-value=29 Score=19.91 Aligned_cols=14 Identities=36% Similarity=0.982 Sum_probs=11.7
Q ss_pred CcccCcCCCCCccc
Q psy12448 133 EQVICTSRDCPIFY 146 (168)
Q Consensus 133 ~~~~C~s~dCpv~Y 146 (168)
.+|+|....||.|-
T Consensus 10 m~vkCeTPnCpF~m 23 (49)
T 2eqg_A 10 MDVKCETPNCPFFM 23 (49)
T ss_dssp CSSBCSSTTCCSBC
T ss_pred EEEeecCCCCCeEE
Confidence 47899999999764
No 19
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.53 E-value=17 Score=22.74 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=17.4
Q ss_pred cccccccCcccccC-CCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHDT-SLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~~-~~~~~lC~~C~~ 97 (168)
...|+.|+..+... .....+|+.|+.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRL 34 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCc
Confidence 56899998877642 123567888865
No 20
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.52 E-value=17 Score=22.69 Aligned_cols=26 Identities=12% Similarity=-0.084 Sum_probs=17.3
Q ss_pred cccccccCcccccC-CCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHDT-SLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~~-~~~~~lC~~C~~ 97 (168)
...|+.|+.++... .....+|+.|+.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKL 34 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCc
Confidence 56899998877642 123567888865
No 21
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.49 E-value=23 Score=22.06 Aligned_cols=26 Identities=15% Similarity=-0.152 Sum_probs=17.5
Q ss_pred cccccccCcccccC-CCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHDT-SLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~~-~~~~~lC~~C~~ 97 (168)
...|+.|+.++... .....+|+.|+.
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~ 36 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNL 36 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCc
Confidence 56899998877642 113567888864
No 22
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.29 E-value=19 Score=23.41 Aligned_cols=23 Identities=26% Similarity=0.441 Sum_probs=14.6
Q ss_pred ccccccCcccccCCCCCcCCccccCCh
Q psy12448 73 QTCIGCKVVLHDTSLSNALCNFCLAKE 99 (168)
Q Consensus 73 ~~C~~C~~~~~~~~~~~~lC~~C~~~~ 99 (168)
..|..|++.++. .+.|++|.+.-
T Consensus 19 ~~C~~C~~~~~~----~afCPeCgq~L 41 (81)
T 2jrp_A 19 AHCETCAKDFSL----QALCPDCRQPL 41 (81)
T ss_dssp EECTTTCCEEEE----EEECSSSCSCC
T ss_pred eECccccccCCC----cccCcchhhHH
Confidence 357777776665 35777776543
No 23
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.52 E-value=41 Score=22.83 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=19.4
Q ss_pred ccccccccCcccccCCCCCc-CCccccCC
Q psy12448 71 KKQTCIGCKVVLHDTSLSNA-LCNFCLAK 98 (168)
Q Consensus 71 ~s~~C~~C~~~~~~~~~~~~-lC~~C~~~ 98 (168)
....|..||...... .... .|+.|.+.
T Consensus 72 ~~~~C~~CG~~~e~~-~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN-ALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC-CSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCC-CCCCCcCccccCC
Confidence 467899999887652 1245 79999765
No 24
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.08 E-value=18 Score=22.76 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=17.1
Q ss_pred cccccccCcccccC-CCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHDT-SLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~~-~~~~~lC~~C~~ 97 (168)
...|+.|+..+... .....+|+.|+.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRL 34 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCc
Confidence 56889998877642 113467887764
No 25
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.70 E-value=33 Score=22.03 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=16.1
Q ss_pred cccccccCcccccCCCCCcCCccccC
Q psy12448 72 KQTCIGCKVVLHDTSLSNALCNFCLA 97 (168)
Q Consensus 72 s~~C~~C~~~~~~~~~~~~lC~~C~~ 97 (168)
...|+.|++.+-.-...+.+|..|..
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~ 50 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNH 50 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTE
T ss_pred ccchhhhCccccccccCCCcCcccCh
Confidence 67888888877642223556666643
No 26
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.04 E-value=58 Score=22.13 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=19.8
Q ss_pred ccccccccCcccccCCCCCcCCccccCC
Q psy12448 71 KKQTCIGCKVVLHDTSLSNALCNFCLAK 98 (168)
Q Consensus 71 ~s~~C~~C~~~~~~~~~~~~lC~~C~~~ 98 (168)
.-..|..||..+........-|+.|.+.
T Consensus 66 ~p~~C~~CG~~F~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAEINIPSRCPKCKSE 93 (105)
T ss_dssp CCCBBTTTCCBCCCCSSCCSSCSSSCCC
T ss_pred ECcChhhCcCeecccCCCCCCCcCCCCC
Confidence 4679999999983221235789999875
No 27
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=22.37 E-value=48 Score=17.05 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHcccccC
Q psy12448 110 YQQLEKKFCQLWTQCQTCQG 129 (168)
Q Consensus 110 ~~~~e~~~~~~~~~C~~C~~ 129 (168)
+..+|.+...+...|..|-.
T Consensus 2 iaaleqkiaaleqkcaaceq 21 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQ 21 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888854
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=22.28 E-value=56 Score=21.64 Aligned_cols=29 Identities=17% Similarity=0.526 Sum_probs=17.0
Q ss_pred ccccccccCcccccC-------CCCCcCCccccCCh
Q psy12448 71 KKQTCIGCKVVLHDT-------SLSNALCNFCLAKE 99 (168)
Q Consensus 71 ~s~~C~~C~~~~~~~-------~~~~~lC~~C~~~~ 99 (168)
....|+.|+..+... +.+...|.-|....
T Consensus 47 ~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~ 82 (133)
T 4ap4_A 47 NANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGY 82 (133)
T ss_dssp TCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBH
T ss_pred hCCCCCCCCCcCccccccccccCCCCCCCCCCCCcc
Confidence 345777777766642 12456677776553
No 29
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=22.22 E-value=26 Score=21.72 Aligned_cols=17 Identities=6% Similarity=0.042 Sum_probs=13.9
Q ss_pred ChhHHhhcccchHHHHH
Q psy12448 17 DSNYYLENQLSKPLIRI 33 (168)
Q Consensus 17 D~~YYI~kqiipPL~Ri 33 (168)
+..-||.++|+|.|.++
T Consensus 46 ~lQd~IN~~i~Pain~l 62 (64)
T 1svf_A 46 AVQDHINSVVSPAITAA 62 (64)
T ss_dssp HHHHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34569999999999875
No 30
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.53 E-value=28 Score=24.78 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=21.7
Q ss_pred cccccccCcccccCCCCCcCCccccCCh
Q psy12448 72 KQTCIGCKVVLHDTSLSNALCNFCLAKE 99 (168)
Q Consensus 72 s~~C~~C~~~~~~~~~~~~lC~~C~~~~ 99 (168)
...|+.|+.+.+-......+|+.|....
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCCcceEecCCeEECCcccccc
Confidence 4689999888775444679999998654
No 31
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=20.35 E-value=29 Score=24.52 Aligned_cols=15 Identities=13% Similarity=0.753 Sum_probs=11.6
Q ss_pred CcccCcCCCCCc-cce
Q psy12448 133 EQVICTSRDCPI-FYM 147 (168)
Q Consensus 133 ~~~~C~s~dCpv-~Y~ 147 (168)
+--.|.|.|||| ||.
T Consensus 34 ~y~~C~~~~C~VvYf~ 49 (130)
T 2hu9_A 34 DFYFCSLESCEVVYFN 49 (130)
T ss_dssp CEEECCCTTCSEEEEC
T ss_pred CEEeECCCCCCEEEEC
Confidence 345899999999 553
No 32
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.08 E-value=66 Score=20.12 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=24.1
Q ss_pred cccccccccccccccCcccccCCCCCcCCccccCChHH
Q psy12448 64 ALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQ 101 (168)
Q Consensus 64 ~i~~f~~~s~~C~~C~~~~~~~~~~~~lC~~C~~~~~~ 101 (168)
+.+.|......|.+|...+.. +..|..|......
T Consensus 7 ~~~~y~~~i~~C~IC~~~i~~----g~~C~~C~h~fH~ 40 (74)
T 2ct0_A 7 GRETYPDAVKICNICHSLLIQ----GQSCETCGIRMHL 40 (74)
T ss_dssp CCCCCSSSSCBCSSSCCBCSS----SEECSSSCCEECH
T ss_pred chhhccCCCCcCcchhhHccc----CCccCCCCchhhH
Confidence 445566567899999998864 4678888766543
Done!