RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12448
         (168 letters)



>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon
           Thermococcus gorgonarius [TaxId: 71997]}
          Length = 426

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 2   KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
           +A             D+ YY+ENQ+   + RI     G + E   LR   TR        
Sbjct: 366 RAIPFDEFDPAKHKYDAEYYIENQVLPAVERILRAF-GYRKED--LRYQKTRQV------ 416

Query: 62  VGALSMFVQKK 72
              L  +++ K
Sbjct: 417 --GLGAWLKPK 425


>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia
           coli [TaxId: 562]}
          Length = 394

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 3   AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESIL 46
              P  +     P+D  +YL  QL      I   I  D   +++
Sbjct: 345 TNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFI-EDNFATLM 387


>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 415

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 6   PIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESI 45
               L     ID+  YLE  L     +I     G   + I
Sbjct: 378 KPVQLAKVTEIDAEKYLE-ALRSTFEQILRAF-GVSWDEI 415


>d1d3ya_ e.12.1.1 (A:) DNA topoisomerase IV, alpha subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 298

 Score = 27.7 bits (61), Expect = 0.76
 Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%)

Query: 115 KKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYM 147
           K F Q     +  +  L      T R+   +Y+
Sbjct: 3   KIFAQTTKMLEFAKQLLETDDFSTLRE--AYYV 33


>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 149

 Score = 26.3 bits (58), Expect = 1.6
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 9   VLENNVPIDSNYYLENQL 26
           VL  NV I++ ++ ++ L
Sbjct: 121 VLTGNVIIETKFFDDDLL 138


>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage
           RB69 [TaxId: 12353]}
          Length = 528

 Score = 24.6 bits (52), Expect = 8.5
 Identities = 7/22 (31%), Positives = 8/22 (36%)

Query: 16  IDSNYYLENQLSKPLIRIFSPI 37
           +D    LE    KPL    S  
Sbjct: 491 MDYTVLLEKTFIKPLEGFTSAA 512


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 597,032
Number of extensions: 25916
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 28
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.1 bits)